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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP019325 Achromobacter insolitus strain DSM 23807 chromosome, complete genome 5 crisprs csa3,PD-DExK,DinG,DEDDh,WYL 1 1 2 0

Results visualization

1. NZ_CP019325
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP019325_1 1536889-1536993 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP019325_2 2567764-2567865 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP019325_3 3170197-3170303 Orphan NA
1 spacers
csa3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP019325_4 3817554-3817685 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP019325_5 5818185-5818332 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP019325_4 4.1|3817603|34|NZ_CP019325|CRISPRCasFinder 3817603-3817636 34 NZ_CP019325.1 3779628-3779661 0 1.0
NZ_CP019325_4 4.1|3817603|34|NZ_CP019325|CRISPRCasFinder 3817603-3817636 34 NZ_CP019325.1 3779710-3779743 0 1.0

1. spacer 4.1|3817603|34|NZ_CP019325|CRISPRCasFinder matches to position: 3779628-3779661, mismatch: 0, identity: 1.0

tgggggctcgcgccgccgccaggccgccctaagg	CRISPR spacer
tgggggctcgcgccgccgccaggccgccctaagg	Protospacer
**********************************

2. spacer 4.1|3817603|34|NZ_CP019325|CRISPRCasFinder matches to position: 3779710-3779743, mismatch: 0, identity: 1.0

tgggggctcgcgccgccgccaggccgccctaagg	CRISPR spacer
tgggggctcgcgccgccgccaggccgccctaagg	Protospacer
**********************************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP019325_4 4.1|3817603|34|NZ_CP019325|CRISPRCasFinder 3817603-3817636 34 NZ_CP030772 Streptomyces sp. YIM 121038 plasmid pSSP121038, complete sequence 686206-686239 9 0.735
NZ_CP019325_4 4.1|3817603|34|NZ_CP019325|CRISPRCasFinder 3817603-3817636 34 NZ_CP054032 Rhizobium sp. JKLM13E plasmid pPR13E01, complete sequence 514117-514150 10 0.706
NZ_CP019325_4 4.1|3817603|34|NZ_CP019325|CRISPRCasFinder 3817603-3817636 34 MH588547 Caulobacter phage CcrSC, complete genome 15501-15534 11 0.676
NZ_CP019325_4 4.1|3817603|34|NZ_CP019325|CRISPRCasFinder 3817603-3817636 34 MH588547 Caulobacter phage CcrSC, complete genome 309043-309076 11 0.676

1. spacer 4.1|3817603|34|NZ_CP019325|CRISPRCasFinder matches to NZ_CP030772 (Streptomyces sp. YIM 121038 plasmid pSSP121038, complete sequence) position: , mismatch: 9, identity: 0.735

tgggggctcgcgccgccgccaggccgccctaagg	CRISPR spacer
agggggttcgcgccgccgccgggccgggggcagc	Protospacer
 *****.*************.*****     ** 

2. spacer 4.1|3817603|34|NZ_CP019325|CRISPRCasFinder matches to NZ_CP054032 (Rhizobium sp. JKLM13E plasmid pPR13E01, complete sequence) position: , mismatch: 10, identity: 0.706

tgggggctcgcgccgccgccaggccgccctaagg	CRISPR spacer
ccctggatcgcgccgccgccaggcagccccttgc	Protospacer
.   ** ***************** ****.  * 

3. spacer 4.1|3817603|34|NZ_CP019325|CRISPRCasFinder matches to MH588547 (Caulobacter phage CcrSC, complete genome) position: , mismatch: 11, identity: 0.676

tgggggctcgcgccgccgccaggccgccctaagg	CRISPR spacer
acgactacggcgccgccgccacgccgctctaagt	Protospacer
  *.   . ************ *****.***** 

4. spacer 4.1|3817603|34|NZ_CP019325|CRISPRCasFinder matches to MH588547 (Caulobacter phage CcrSC, complete genome) position: , mismatch: 11, identity: 0.676

tgggggctcgcgccgccgccaggccgccctaagg	CRISPR spacer
acgactacggcgccgccgccacgccgctctaagt	Protospacer
  *.   . ************ *****.***** 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1561894 : 1570119 9 uncultured_Mediterranean_phage(28.57%) tRNA NA
DBSCAN-SWA_2 4858351 : 4920612 63 Burkholderia_phage(26.67%) plate,tail,holin,tRNA,head,capsid,protease,portal,terminase,integrase attL 4857854:4857869|attR 4892532:4892547
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage