CRISPRimmunity

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP019352	Lacinutrix venerupis strain DOK2-8 chromosome, complete genome	3 crisprs	DEDDh,csa3,cas3	0	3	1	0

1. NZ_CP019352

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP019352_1

• CRISPR_ID: NZ_CP019352_1
• CRISPR_location: 80157-80425
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 3 spacers

Consensus repeat of NZ_CP019352_1

Consensus_repeat	Method
AACGGATGTCCTGATACTGATGGTGA	CRISPRCasFinder

spacers of NZ_CP019352_1

>1.1|80183|55|NZ_CP019352|CRISPRCasFinder
CGGTATATTTGATAAAAACGATGCATGTCCAGAAGTTGCTGGTTTAGAAGCTTTC
>1.2|80264|55|NZ_CP019352|CRISPRCasFinder
TGGAATCGAAGATTCTAAAGATTCTTGTCCTAACGAAGCTGGTTTAGCTGAGTTT
>1.3|80345|55|NZ_CP019352|CRISPRCasFinder
CGGTGTTGTAGATGGTAGCGATGATTGTCCTACTGTTAAAGGTCTTAAGAGCTTA

CRISPR arrays and Neighbor proteins around NZ_CP019352_1

CRISPR arrays

The CRISPR arrays of NZ_CP019352_1

>merge|NZ_CP019352|1|80157-80425|CRISPRCasFinder
TTTGGAGGAACTGATACTGATGGTGACGGTATATTTGATAAAAACGATGCATGTCCAGAAGTTGCTGGTTTAGAAGCTTTCAACGGATGTCCTGATACTGATGGTGATGGAATCGAAGATTCTAAAGATTCTTGTCCTAACGAAGCTGGTTTAGCTGAGTTTAACGGATGTCCTGATACTGATGGTGACGGTGTTGTAGATGGTAGCGATGATTGTCCTACTGTTAAAGGTCTTAAGAGCTTAAATGGTTGTCCAGATGCTGATGCTGA

>NZ_CP019352|1|1|80157-80425|CRISPRCasFinder
TTTGGAGGAACTGATACTGATGGTGA	CGGTATATTTGATAAAAACGATGCATGTCCAGAAGTTGCTGGTTTAGAAGCTTTC
AACGGATGTCCTGATACTGATGGTGA	TGGAATCGAAGATTCTAAAGATTCTTGTCCTAACGAAGCTGGTTTAGCTGAGTTT
AACGGATGTCCTGATACTGATGGTGA	CGGTGTTGTAGATGGTAGCGATGATTGTCCTACTGTTAAAGGTCTTAAGAGCTTA
AATGGTTGTCCAGATGCTGATGCTGA

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019352.1|WP_076731456.1|68874_69369_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP019352.1|WP_076731460.1|73172_74138_+|endonuclease	unknown	unknown	gnl|CDD|197338
NZ_CP019352.1|WP_076731468.1|87285_88620_+|MATE-family-efflux-transporter	unknown	unknown	gnl|CDD|240541
NZ_CP019352.1|WP_076731465.1|81027_83769_+|PD-(D/E)XK-nuclease-family-protein	unknown	unknown	gnl|CDD|378929
NZ_CP019352.1|WP_076731474.1|93081_94773_-|single-stranded-DNA-specific-exonuclease-RecJ	unknown	unknown	gnl|CDD|273193
NZ_CP019352.1|WP_076731467.1|84607_86971_-|hybrid-sensor-histidine-kinase/response-regulator	unknown	unknown	gnl|CDD|274362
NZ_CP019352.1|WP_076731473.1|91982_93056_-|OmpA-family-protein	unknown	unknown	gnl|CDD|143586
NZ_CP019352.1|WP_076731453.1|65377_67213_+|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl|CDD|224055
NZ_CP019352.1|WP_076731462.1|75022_78187_+|AAA-family-ATPase	unknown	unknown	gnl|CDD|237554
NZ_CP019352.1|WP_076731471.1|89962_90622_-|peptidoglycan-binding-protein	unknown	unknown	gnl|CDD|366659
NZ_CP019352.1|WP_076731472.1|90669_91929_-|MFS-transporter	unknown	unknown	gnl|CDD|340863
NZ_CP019352.1|WP_076731470.1|89213_89966_+|UDP-2,3-diacylglucosamine-diphosphatase	unknown	unknown	gnl|CDD|277343
NZ_CP019352.1|WP_076731469.1|88758_89208_+|6-carboxytetrahydropterin-synthase	unknown	unknown	gnl|CDD|376501
NZ_CP019352.1|WP_076731461.1|74210_74819_-|superoxide-dismutase	unknown	unknown	gnl|CDD|223678
NZ_CP019352.1|WP_076731459.1|71864_73094_-|GTPase-HflX	unknown	unknown	gnl|CDD|274455
NZ_CP019352.1|WP_076731463.1|78227_79424_+|glycine-C-acetyltransferase	unknown	unknown	gnl|CDD|235893
NZ_CP019352.1|WP_076731457.1|69386_71648_-|penicillin-binding-protein	unknown	unknown	gnl|CDD|227342
NZ_CP019352.1|WP_076731455.1|67845_68790_+|DUF3078-domain-containing-protein	unknown	unknown	gnl|CDD|378621
NZ_CP019352.1|WP_076731454.1|67230_67734_+|DUF2480-family-protein	unknown	unknown	gnl|CDD|313799
NZ_CP019352.1|WP_076731466.1|83768_84611_+|alpha/beta-hydrolase	unknown	unknown	gnl|CDD|334855

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP019352.1|WP_076731455.1|67845_68790_+|DUF3078-domain-containing-protein	gnl|CDD|378621	pfam11276, DUF3078, Protein of unknown function (DUF3078). This bacterial family of proteins has no known function.	4.37187e-16
NZ_CP019352.1|WP_076731460.1|73172_74138_+|endonuclease	gnl|CDD|197338	cd10283, MnuA_DNase1-like, Mycoplasma pulmonis MnuA nuclease-like. This subfamily includes Mycoplasma pulmonis MnuA, a membrane-associated nuclease related to Deoxyribonuclease 1 (DNase1 or DNase I, EC 3.1.21.1). The in vivo role of MnuA is as yet undetermined. This subfamily belongs to the large EEP (exonuclease/endonuclease/phosphatase) superfamily that contains functionally diverse enzymes that share a common catalytic mechanism of cleaving phosphodiester bonds.	1.34544e-17
NZ_CP019352.1|WP_076731468.1|87285_88620_+|MATE-family-efflux-transporter	gnl|CDD|240541	cd13136, MATE_DinF_like, DinF and similar proteins, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins. Escherichia coli DinF is a membrane protein that has been found to protect cells against oxidative stress and bile salts. The expression of DinF is regulated as part of the SOS system. It may act by detoxifying oxidizing molecules that have the potential to damage DNA. Some member of this family have been reported to enhance the virulence of plant pathogenic bacteria by enhancing their ability to grow in the presence of toxic compounds. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR).	1.46181e-98
NZ_CP019352.1|WP_076731465.1|81027_83769_+|PD-(D/E)XK-nuclease-family-protein	gnl|CDD|378929	pfam12705, PDDEXK_1, PD-(D/E)XK nuclease superfamily. Members of this family belong to the PD-(D/E)XK nuclease superfamily.	9.38866e-21
NZ_CP019352.1|WP_076731474.1|93081_94773_-|single-stranded-DNA-specific-exonuclease-RecJ	gnl|CDD|273193	TIGR00644, recJ, single-stranded-DNA-specific exonuclease RecJ. All proteins in this family are 5'-3' single-strand DNA exonucleases. These proteins are used in some aspects of mismatch repair, recombination, and recombinational repair. [DNA metabolism, DNA replication, recombination, and repair].	1.91506e-173
NZ_CP019352.1|WP_076731467.1|84607_86971_-|hybrid-sensor-histidine-kinase/response-regulator	gnl|CDD|274362	TIGR02956, sensor_protein_TorS, TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072). [Signal transduction, Two-component systems].	1.79171e-67
NZ_CP019352.1|WP_076731473.1|91982_93056_-|OmpA-family-protein	gnl|CDD|143586	cd07185, OmpA_C-like, Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA. OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.	3.19302e-38
NZ_CP019352.1|WP_076731453.1|65377_67213_+|ABC-transporter-ATP-binding-protein	gnl|CDD|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	5.93672e-107
NZ_CP019352.1|WP_076731462.1|75022_78187_+|AAA-family-ATPase	gnl|CDD|237554	PRK13909, PRK13909, RecB-like helicase.	3.21388e-79
NZ_CP019352.1|WP_076731471.1|89962_90622_-|peptidoglycan-binding-protein	gnl|CDD|366659	pfam01471, PG_binding_1, Putative peptidoglycan binding domain. This domain is composed of three alpha helices. This domain is found at the N or C-terminus of a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. This family is found N-terminal to the catalytic domain of matrixins. The domain is found to bind peptidoglycan experimentally.	1.35283e-08
NZ_CP019352.1|WP_076731472.1|90669_91929_-|MFS-transporter	gnl|CDD|340863	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of Streptococcus pyogenes macrolide efflux protein A (MefA) and similar transporters, many of which remain uncharacterized. Some members may be multidrug resistance (MDR) transporters, which are drug/H+ antiporters (DHAs) that mediate the efflux of a variety of drugs and toxic compounds, conferring resistance to these compounds. MefA confers resistance to 14-membered macrolides including erythromycin and to 15-membered macrolides. It functions as an efflux pump to regulate intracellular macrolide levels. The MefA-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.0432e-57
NZ_CP019352.1|WP_076731470.1|89213_89966_+|UDP-2,3-diacylglucosamine-diphosphatase	gnl|CDD|277343	cd07398, MPP_YbbF-LpxH, Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain. YbbF/LpxH is an Escherichia coli UDP-2,3-diacylglucosamine hydrolase thought to catalyze the fourth step of lipid A biosynthesis, in which a precursor UDP-2,3-diacylglucosamine is hydrolyzed to yield 2,3-diacylglucosamine 1-phosphate and UMP. YbbF belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	5.73183e-57
NZ_CP019352.1|WP_076731461.1|74210_74819_-|superoxide-dismutase	gnl|CDD|223678	COG0605, SodA, Superoxide dismutase [Inorganic ion transport and metabolism].	1.30032e-104
NZ_CP019352.1|WP_076731459.1|71864_73094_-|GTPase-HflX	gnl|CDD|274455	TIGR03156, GTP_HflX, GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like). [Unknown function, General].	2.00634e-171
NZ_CP019352.1|WP_076731463.1|78227_79424_+|glycine-C-acetyltransferase	gnl|CDD|235893	PRK06939, PRK06939, 2-amino-3-ketobutyrate coenzyme A ligase; Provisional.	0
NZ_CP019352.1|WP_076731457.1|69386_71648_-|penicillin-binding-protein	gnl|CDD|227342	COG5009, MrcA, Membrane carboxypeptidase/penicillin-binding protein [Cell envelope biogenesis, outer membrane].	2.4617e-152
NZ_CP019352.1|WP_076731469.1|88758_89208_+|6-carboxytetrahydropterin-synthase	gnl|CDD|376501	pfam01242, PTPS, 6-pyruvoyl tetrahydropterin synthase. 6-Pyruvoyl tetrahydrobiopterin synthase catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin, the second of three enzymatic steps in the synthesis of tetrahydrobiopterin from GTP. The functional enzyme is a hexamer of identical subunits.	6.10294e-30
NZ_CP019352.1|WP_076731454.1|67230_67734_+|DUF2480-family-protein	gnl|CDD|313799	pfam10652, DUF2480, Protein of unknown function (DUF2480). All the members of this family are uncharacterized proteins, but the environment in which they are found on the bacterial genome suggests a function as a glucose-6-phosphate isomerase (EC 5.3.1.9). This could not, however, be confirmed.	1.98952e-113
NZ_CP019352.1|WP_076731466.1|83768_84611_+|alpha/beta-hydrolase	gnl|CDD|334855	pfam02230, Abhydrolase_2, Phospholipase/Carboxylesterase. This family consists of both phospholipases and carboxylesterases with broad substrate specificity, and is structurally related to alpha/beta hydrolases pfam00561.	9.68123e-08

Protein sequences

>NZ_CP019352.1|WP_076731463.1|78227_79424_+|glycine-C-acetyltransferase
MYGKIQQHLQQEIQDIKDNGLYKEERIITSPQGAEITLNTGETVLNFCANNYLGLSSHPEVIQAAKDAMDTHGFGMSSVRFICGTQDIHKELEQKIADFYGTEDTILYAAAFDANGGVFEPLLGKEDAIISDSLNHASIIDGVRLCKAARYRYQNNDMADLEKQLIAANENGARHKIIVTDGVFSMDGLVAPLDKICDLADKYDALVMIDECHATGFIGETGIGTLEDKDVLGRIDIITGTLGKAMGGAMGGYTTAKKEVIDILRQRSRPYLFSNSLAPAIVGASIKVFDMLKNDTSLRDKLEKNTNYFKEKMKAAGFDIIDGDSAIVPVMLYDAKLSQTMANMLLNEGIYVIGFFFPVVPKEKARIRVQLSAAHEISHLDKAIEAFIKVGKTLEVIK
>NZ_CP019352.1|WP_076731462.1|75022_78187_+|AAA-family-ATPase
MSSNSSFQVYNASAGSGKTFTLVKEYLKILFSASGNYQFRNILSITFTNKAVGEMKARILEMLKHFSEIENLKQPHPMFTDIVNDLKLKPEELQEKSETILNTIMHNYAAFDIATIDGFNHRLIRTFAHDLKLPLNFEVELDTESLLNEAVDRLIAKAGTNKELTKILIDFAIEKADDDKSWDVALDFNKIAKLLTKESDLEFVKTLNDKKLEDFSILKKTLFSEIKITEKKIIESADLVLQLITDNGLEYSDFTRNTLPNHFIKVKTLNFNRIYDNKLETNLAINKGIYNKKLDLSKSSVIDRILPEIEILFHIIKKSVYQHKFLKAFYKNLTPLSVLTFINKELLDIKTEENKMLISEFNAIISKEIKGQPTPFIYERMGEKFKHYFIDEFQDTSQMQWENLTPLIDNTLSGENIKAEKGTAMIVGDAKQAIYRWRGGKAEQFMDLFNKNAKPFHIEQDVKNLDYNYRSLETIVNFNNSLFKHISSQATLSKEDYANLYAQSYQKPSKKEQGYVNLSFIDFKDEDDDKDTVYTQHVLDTVNSCLEKGYTLKDICILVRKKKHGIAIAEFLSSENLKITSSDTMLINISPEVQLINNVLTVLINPNDTECKVNILDFLAEKFNVEDKHEFFKNHLFLELDLFFKSFEAFNIFINPKELIQQGLFDLAETVVRDFNLVETSNAHVQFYLDTVLEYSQKNISDLSSFLEYFNLKKDKLSIVSPQEQDAIQIMTIHKSKGLEFPVVIFPYADINIYEDIEPKEWFALNPENYNGFKYALLNYSKAFEDYGEEGNAIYTRHQAELELDSLNLLYVALTRPVEQLYIIGKKDVNAKGDLNLKSYSGLLIDYLMHINKWNDNETIYSFGSPLKPKTIKKEQDIKTIEQQEFISTAKEDHNIKVIANSGYLWDTKQEDALEKGNLVHDIMEHIKTESDVDSAIKNFENDGIIDNTQAKHLKVSILSIINHPDLKSYFSGNNTVYNERDIISKTGKLYRPDRLVINSKNEVIIIDYKTGLHNPKYQHQLQDYQDVLEEMNFKVTKKILLYINKNITIKSYN
>NZ_CP019352.1|WP_076731461.1|74210_74819_-|superoxide-dismutase
MAFELPKLGYAYDALEPNIDARTMEIHHTKHHNGYTTKLNAAIEGTDLEGKSIENILSNLDMDNKAVRNNGGGFYNHSLFWEIMNPEDKGRLSGELKDAIEAAFDSVDAFKDAFSKAAATQFGSGWAWLCVHKGGKVEVCSTPNQDNPLMPGVTCGGTPILGLDVWEHAYYLNYQNRRPDYIDAFFKVINWNEVERRYALAK
>NZ_CP019352.1|WP_076731460.1|73172_74138_+|endonuclease
MILNFFKSKEKRHTIAFYNIENLFDVYDDELTRDSDMTPSSEKKWSIKRYKNKLRKIGYVISNIGKEDVKRHPAIVGLAEVENEAVLQDLVNSKHLEDYNYKFVHYDSPDERGIDVALLYDDTVFNVAYSKSYKLELIDEFGVEDLTRDILLVSGLFEGLELHLIVNHWPSRRTGDVETKHKRLKAAKKVTEIIDELKLKSPNAKVVIMGDFNDDPESESVKTLEKSHGLFNPMRTLLSLDRGTTSHNHRWNLFDQFLITHNFFERKKNALRYVKANIFDEDYLKEYDGKYKGSPYRTYVGKRYKGGYSDHFPVYLIMSKK
>NZ_CP019352.1|WP_076731459.1|71864_73094_-|GTPase-HflX
MLEKKDIELESAVIIGVVTKIQDEDKSKEYLDELEFLTFTAGGDVKKRFTQKMEMPNPKTYIGTGKMEEVRKYIHDNNIGTAIFDDELSASQERNISKILECKVLDRTNLILDIFAQRAQTSYARTQVELAQCEYLLPRLKGMWTHLERQKGGIGMRGPGETEIETDRRIVRDRISLLKDKIKVIDKQMSVQRGNRGKMVRVALVGYTNVGKSTLMNTISKSKVFAENKLFATLDTTVRKVVIQNLPFLLSDTVGFIRKLPTQLVESFKSTLDEVREADLLLHVVDISHPNFEEHIASVNKVLGEIDSSNKPTIMVFNKIDAYKAKPFDDTDLIAERTEEHYSLAEWKKTWMSRVGEDNALFISALNKKNLEDFKKRVYDEVRDIHVTRFPYNHFLYPDYDYDNMGEEE
>NZ_CP019352.1|WP_076731457.1|69386_71648_-|penicillin-binding-protein
MIKQKIKALLKNKWVKKSLLAGVIVLVLGIIFYLSIYFGAFGKLPNTAELTNLKQAEATQILDKDSTLIGKYYIYDRQPLTYQEFPKHLLNALIATEDVRFYEHDGVDNVSLLRVFFKTILFQDQSSGGGSTITLQLAKNLFGRENHFAFSTVINKIKESIVAKRIEKIYTKKEILTLYLNTVPFPDNTYGIESASRKFFNVSTANLTVSQAATLIGSLKANSYYNPRRNIENSQKRRDVVLQQMFKYNFLKGTELEKAKQDSLKLDYQSFNHDLGLAPYFRAQLKKELSTILANYKKPNGEPYDLYNDGLIVHTTLDQQMQEYAEEAMQSHLAKLQQAYEASYGKNAPWKTNKKLIESALKTLPEYKKHKASGLNHDQIIDSLSVKHEVELFNWDGVTKAQLSTIDSLQHYLKFLNTGMIALDPKTGAVRTYVGGADYRFFKYDHVSQSERQVGSTFKPFVYTAAIENGMKPCTYFSPKAITYTDYKNWTPTNSGNKAEDPHINYNLETALSQSMNTIAVKVLNEVGIDNVLQQAKKLGISKQLPKEPSLALGVAEINIKELAGAYASYVNNSKPVKPYFITKIEDKNGVEIVSFKPEENTTKAYSDDTRQVMLQIMKATVNSGTAARLRSTYNLKNNIAGKTGTTQDNKDGWFVGITPNLVTVNWVGNDNYNIGFKTTGLGQGANSALPIFAKFYQKLNLDSKYNSITKSNFENPSASVIDALNCEDEKRDGFLKRLFGKKKSERKFNKKH
>NZ_CP019352.1|WP_076731456.1|68874_69369_+|hypothetical-protein
MKKVLISCLILTFFSCKKEVKQTEVLKKNYEKIEQLQWLVGNWTNITEKKQSFENWQKANDSTLKAHSYTIVENDTVFAERITLQQIDTTVAFTVVAYNENDNKPVTFILKPTNSNISTFENLKHDFPSKISYSNPVKDSIHAWIEGKMDNEQVKVDFFYKRAE
>NZ_CP019352.1|WP_076731455.1|67845_68790_+|DUF3078-domain-containing-protein
MKKLLLLLALSIGTFSINAQTKEELKTQKAEKQAEADKFQAEANAIQAQIDALPGWRKGLFGTVGGTISNFSNWYSQGTPDNASGNIGVSINGFANLIEDKFFWRNSLTTNLNWVKLDDKNDPTDDDNFNPTTDVFNISSLYGRNLTKNFAVSGLAEYRTTLLDNFNDPGYLDVGVGGTWTPLENLIVVVHPLNYNFVFADNDAIFDSSLGAKIVADYTRQIGAISFKSNLSTFQSYKSGDLSNVTWTNSFSYTLWKMIGVGFDFGLRSNKQEALNYALGQFDPLAIPAQAVPTFDNVDNKLQSYWLLGLSYNL
>NZ_CP019352.1|WP_076731454.1|67230_67734_+|DUF2480-family-protein
MAEEIINRVANSKLVVFDLEDFYPEGKRIVFDIKDWLYEGFVLREKDFRESVKNYNWSQHQDQYVALTCSTDAIVPAWAFMLITLQLQPYTKKTVLGNLEALETEIYQEIIANLDTEIYKDKPVIIKGCSKKPVPDSALIMVSNKLKPVVKSILFGEACSSVPLFKR
>NZ_CP019352.1|WP_076731453.1|65377_67213_+|ABC-transporter-ATP-binding-protein
MPKRKLTSLKDNKKTSLKQSFSALVFIPRFFKEIWKTNKKLFLLSAFCRLIGALLPVIILWIGKIIIDEIILQSKADVSDLTLLWTYVAVEFGLIILSDLVSRAISLTDGLLGDSYSIDSSVRIIKKTNQINISLLEDSEFYDKLERARTQTTGRVGLMSNALGEVQSLISILTLVAGLVYFEPYLIILLVLSIIPSFINEIWFSQQQYSLARGWTAERRELDYLRFIGANDKTAKEIKLFGLTDFVVNRFKNLSQEYYDLNKKLAVKRSALGFLFNVLGTLSYYGAYVFIIYRVISGAITLGELTFLSGSFNRLTKNLQDFFSKFTRITESALYLKDYFDFLDISIEPNHKEDTPLPETIKEGFEFKNVRFAYPGSDNEILKGISFTMKAGEKLAFVGQNGAGKTTLTKLILRFYEPTSGEILLDGININRFNKADYQEYFGVIFQDFFKYEFTVKENIAIGDIDEIDNQTKIENAAALSLANEVVQDLKFGYNQQLGKRFAKGQELSGGQWQKVALARAYMKDAKVMILDEPTSALDAKAESEVFDRFIGLTQGKTSIIISHRFSTVRQADRILVLEEGRVLEIGTHEELMQNKLLYAELFTLQAEGYQ
>NZ_CP019352.1|WP_076731465.1|81027_83769_+|PD-(D/E)XK-nuclease-family-protein
MKSFIFDVLESLKDKGEDLSTLYFILPSKRAGVFLRQELSAVVKKTIFSPTIISIEEFVEELAELTTINNTELLFEFYNTYLALTPKQEQESFEVFSKWAQILLQDFNEIDRYLIPQNQIFDYLAAVKELDHWSVGNDKTEVIKNYLKFWNKLKLYYKHYTQNLIAKKTGYQGLIYREAVENIQNYCTLTKRKHIFLGFNALNTAEETIIQELLKNNLAEIFWDIDETFIENKIHDAGLFTRAHKTKWKHFEKHPFNWVTKHYKNDKNIEVLGVPKNIGQAKAIGSILKKLETKNPNLKSTAVVLGDENLLIPILNSVPESISKLNITMGFPLSSIPLASLFEQLFSVHKKASEKYYYKDIIGLLSHQFINPLFLNGTINTASIVIDTIKKNNLVYLTVSEIRQYAKNNASLIELIFNPWKDDANKAIENCFKIINKVKEYLSTNKEDNLISLEYLFRFNKLFNELFRLNNTYKHIQDISALFSIYTELLSSETLDFKGEPLQGLQVMGMLESRVLDFETVIISSVNEGVLPSGKTNNSFIPFDIKIENKLPTYKEKDAVYTYHFYRLLQRAKNIFILYNTEVDVLTGGEKSRFINQLELENIHKINHKIITPKVPGFNNKLKEIVKTKTVINQLKEVAQRGFSPSSLTNYIRNPLDFYYQSLLGIKNIEEVEETVAANTMGTVVHDTLEALYKPYINMELKIEDIKDMMPKIESNIEMFFKKTYAEGDMSKGKNLIIFEIAKRYVQNFLNLEIEDLKAGNTIKILALEQKTEVPLNIPELNFNVKLKGTVDRVDLYNGITRIIDYKTGKVNNNQVSITNWEDINLDYKKYSKSFQILAYAYMMNALKPLDFPVEAGIISFKNLNSGFIKFTQKGGKKNSLITQENLNSYFNELKKLIIEICNPEINFVEKEV
>NZ_CP019352.1|WP_076731466.1|83768_84611_+|alpha/beta-hydrolase
MIKKNQILNRNNQKPIVFDTFFNKTEKQKPLVVFCHGYKGFKDWGCWNLMAEAFMNANLFFVKFNFSHNGGTIENPIDFPDLNAFAENNYTKELDDLDAILNYFLANDYEYKNEININNIVVIGHSRGGGIAIIKSAEDARIKKLITFASVSDFSKRTSTIGDLEEWKKLGVKYVLNGRTKQQMPHNYQFYKDFKANEERLNIEKSEKSLQIKHLIIHAKNDKSIKYNEAEMLHNWSKHSELFPIENSDHVFSTKHPWLNSTMPKELKQVVDKSINFINN
>NZ_CP019352.1|WP_076731467.1|84607_86971_-|hybrid-sensor-histidine-kinase/response-regulator
MCRVILLIFCLFSSALFAQNTPFNPIESKGKLYEYALFAKAENPNLTIEDIISNQSDIVYNPLTSENQSVGFSSDDYWLTFSLENTTNQENTYYLETARPVTDIANLYQINNNDIKHFSSGDAIPFKDRQVKHRKTIFKIILPKNSEQKFYIHLKSDGETLNLPLTIYSPNEFWKVNYAEQLFLGFFYGLLFLASLIYLFFFTSLSNKTFVYYSIYVFSIALMQTALDGIIFQYLLPFGGYLNDRAVLIAALFSNFFLLKYCEHFLKVKSRTKLIKYAFKVLYVVVIALGLLLFINDKTKELVYPISNVNGLLSLILILVTLFYLRYKNYKIDSFFSIGIFFLVIGLMGFVMNNLSLLPNNFITMNSAKFGISFEVIFLSLSMTNLIRDLRLEKESSQIDALNKSEEISELKSYFMSNISHELRTPINAIMGIAADEMDKKLDNESQKNFEIIKHASLSLLSNINDILDFEKIEKRELQLRPNPFNPKEAIEQISNNWQRMAEQKGLKYNINVSESIPYSVLGDSERFVQVINNVLSNAVKFTSYGTINCSVITTNTPNGNTNFKIEISDTGVGIDVDKKNHLFNSFGQMRLNNKRRFGGVGLGLSIVKHLIGLFEGEINIDSELGRGTKVSISIDFKTLEESQPIKEPVQVKTKGNELKVLIVEDNELNQMIMKKILTKLSITDFKLAANGKEALELLKNNVFDIILMDLQMPVMDGYETTTIIRNNPPFSIIKDIPIIAVTADATETARQKVIAVGMNDYITKPVNRELLFRKINMHKSSVLKIA
>NZ_CP019352.1|WP_076731468.1|87285_88620_+|MATE-family-efflux-transporter
MSSNISIKHINKLAIPALIAGISEPILSLTDAAIVGNIEFNATESLAAVGIVSTFLSMLIWVFGQTRSAISSIVSQYLGANKLNEIKNLPAQAIFIITLLSIIIIITTYPFAEAIFKLYNAENLILEYSIDYYRIRVFGFPFTLFTIAVFGTFRGLQNTFYPMVIAIIGASSNIILDYALVYGVANIVPAMHIHGAAYASVISQLIMAVLSALYLIKKTNIPLIARLPLNKEMNRFLLMIGNLIVRTIALNVTLYFATKYATSYGKEYIAAYTIAINIWFLGAFLIDGYASAGNILSGKLLGAKAYGKLISLSNRLIKYGILIGLFMAVLGALFYYSIGNIFIKEPEVLKQFYSIFWIVLAMQPLCALAFIFDGMFKGLGKMADLRNLLLISTFAVFLPALFILDYYNFKLNGIFIALTLWIIARGFPLIIKFRKEFLPQSQKN
>NZ_CP019352.1|WP_076731469.1|88758_89208_+|6-carboxytetrahydropterin-synthase
MGNIRITKLFTFETGHALYGYDGKCKNVHGHSYKLSVTVFGQPISDNTNVKFGMVIDFSDLKKIVKEEIVDVFDHATVFNKNTPHVDLARELQNRGHNVLLVDYQPTSEMMVIDFAKKIKKRLPENIQLHSLKLQETESSYAEWYASEN
>NZ_CP019352.1|WP_076731470.1|89213_89966_+|UDP-2,3-diacylglucosamine-diphosphatase
MQIPKGKKIYFASDNHLGAPTKEQSLPREQKFVAWLDEIKKDAAVIFLLGDLFDMWMEYKTVIPKGFTRTLGKLAEISDSGIPIYYFVGNHDLWMNGYFEEELNIPVYHKPQEYTFNNTTFFIGHGDGLGPGDKGYKRMKKVFTNPISKWLYRWLHPDFGMRIAQYLSVKNKMISGDDDAIFLGEDKEWLVQYCKRKLETKHRDYFVFGHRHLPLDIALNSKSRYINLGDWISYYTYGVFDGETMELKEY
>NZ_CP019352.1|WP_076731471.1|89962_90622_-|peptidoglycan-binding-protein
MKKILFFIIAIIILMFAYSEYKEYQRFHPENANLKVSETIDVNYYNQEVVYNYYDALEAANNYMQMQWSANGIDVRSPEDDDEETVLAVAEYGKKIAKLNYFKAVLEQSKTLKSKGLSNNDIKFFESEGVSIAEYNKTKAEEDFKKEILSMLPQKPLYSGEKSVFVYEMQKLLVKKGFDISVDGVYKNITSEALKSFEEKQNLFPDGKIDVITLKALLN
>NZ_CP019352.1|WP_076731472.1|90669_91929_-|MFS-transporter
MSKNDPYAALRFKEFNLFLIMRFLLVFAWSMQFIVIEWQVYALTKDPLSLGIIGLMEIIPAFTMALFAGHIVDQREKRNLLAICLAAFSIISFALFWLTSDTVSQSWSKDSLLYSIYALVFFGGFLRSFFGPTIFSLVALIVPKKIYPNAATWNSSTWQMSRVLGVAFAGFSIGWIGVHYSLCIVFALVMAALFMVFQISRKPILNPKIGEPVMQSLKEGVSFVFKTKAILGAITLDMVSVLFGGAVALLAVFAEDILKVGPQGFGILVAAPSVGAFLTMLVTAYIPISKNAGMKLLVAIFGFGVCIVVFGLSSTFWISVVALFFSGVTDGVSMVIRQTILQLKTPDNMRGRVSSVNSMFVGSSNELGAFESGLTAKLMGTATAVVFGGSMTLITVVTTAIVSPSFRKLDLTKDFEANN
>NZ_CP019352.1|WP_076731473.1|91982_93056_-|OmpA-family-protein
MKLKITLLFVLVLGIINAQNLVINPSFEEYKKCPKNYSEFNNNVLSWTTANKGTSDYYNNCNTTFGSFNPRGFQNPQNGDGFAGIVTYYEDRYSAVRHYREYVQGELKTPLLKNKRYSLKIRISLADESNFAINQLSAVFLEHPINIKTKSFIDLKNLKKDSVIYSEVSFKKDTYFTTKKNWVTLEKNFIAKGNEKYICFGNFNSNEATEKIKIGKYFLPIESYYFIDNIKVSPLDTQGFLANNLYAFSNVLFDFDKVVLLSSSLKELDKLYIHLKENKHLNIEIYGHTDNVGTLNRNEELSLQRAQSVSNYLINKGLKKERIQWFGFGSSKPLVENSSEDNRAKNRRVEFKLIEKK
>NZ_CP019352.1|WP_076731474.1|93081_94773_-|single-stranded-DNA-specific-exonuclease-RecJ
MRWTLKPKPNQETVQFLQHALQVEEPVASLLAQRGIETYEQAKDFFRPNLKDLHNPFLMKDMQKAVERIEKAIENNENILVYGDYDVDGTTAVSLMSSYLKSEYPNVATYIPDRYNEGYGISFQGIDFAEDNNFTLIIALDCGIKAIDKIAYAEEKNIDFIICDHHRPGENVPNAVAVLDPKQTDCNYPYKELCGCGVGFKLIQALASKKGKNVEDLKEYLDLVATAIGADIVPITGENRILAYFGLQVINSAPRAGFKAIINQIKKETLTITDVVFVIAPRINAAGRMKHGQYAVDLLTETNVETAQVYAQEIEDFNTDRRAADKQITVEALQQIEDNNEKDRLTSVVYQPDWHKGVIGIVASRLIETYYRPTLVFTKSGDKLAASARSVKGFDVYNALEACAEHIEQFGGHKYAAGLTLKEENYEAFKQKFEQVVQATIDKRLLTPEITIDRQIELNDISDKFYRILSQFAPFGPGNMSPVFMSDNLHDTGYGKCVGEDNKHLRITVKQPNSNPIVCIGFGLGDKLNLIKNNNHFKAVYSIDENEWQGNVSLQLKLRDLQE

Crispr_ID: NZ_CP019352_2

• CRISPR_ID: NZ_CP019352_2
• CRISPR_location: 1619696-1620009
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 5 spacers

Consensus repeat of NZ_CP019352_2

Consensus_repeat	Method
AAATCTCCAGAACCAGTTACACT	CRISPRCasFinder

spacers of NZ_CP019352_2

>2.1|1619719|31|NZ_CP019352|CRISPRCasFinder
AGCATCTAAATGGCCGTTACATACAATTTCT
>2.2|1619773|37|NZ_CP019352|CRISPRCasFinder
GGCCTCTACATCTTTAGCATCTAAATTATAACCATGA
>2.3|1619833|34|NZ_CP019352|CRISPRCasFinder
AGCTTTTAGTTTATTGGTTTTACCGTTTAAAGTT
>2.4|1619890|34|NZ_CP019352|CRISPRCasFinder
GCCTTCAATTTCATCGGCATCAACATCTAAAACA
>2.5|1619947|40|NZ_CP019352|CRISPRCasFinder
TGTTGTAAAATTATTTGCTACAATTTTATTTTTAGAAGAA

CRISPR arrays and Neighbor proteins around NZ_CP019352_2

CRISPR arrays

The CRISPR arrays of NZ_CP019352_2

>merge|NZ_CP019352|2|1619696-1620009|CRISPRCasFinder
ATATCTCCAGAGCCTGTAACTTTAGCATCTAAATGGCCGTTACATACAATTTCTACATCTCCAGATCCTGTTACTTTGGCCTCTACATCTTTAGCATCTAAATTATAACCATGAAAATCTCCAGAACCAGTTACACTAGCTTTTAGTTTATTGGTTTTACCGTTTAAAGTTAAGTCTCCAGAACCAGTTACACTGCCTTCAATTTCATCGGCATCAACATCTAAAACAATATCTCCAGAACCAGATACACGTGTTGTAAAATTATTTGCTACAATTTTATTTTTAGAAGAAACGTCTCCAGAACCAGAAAGACT

>NZ_CP019352|2|2|1619696-1620009|CRISPRCasFinder
ATATCTCCAGAGCCTGTAACTTT	AGCATCTAAATGGCCGTTACATACAATTTCT
ACATCTCCAGATCCTGTTACTTT	GGCCTCTACATCTTTAGCATCTAAATTATAACCATGA
AAATCTCCAGAACCAGTTACACT	AGCTTTTAGTTTATTGGTTTTACCGTTTAAAGTT
AAGTCTCCAGAACCAGTTACACT	GCCTTCAATTTCATCGGCATCAACATCTAAAACA
ATATCTCCAGAACCAGATACACG	TGTTGTAAAATTATTTGCTACAATTTTATTTTTAGAAGAA
ACGTCTCCAGAACCAGAAAGACT

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019352.1|WP_076733005.1|1618372_1619566_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP019352.1|WP_076733000.1|1614576_1615056_-|peptide-methionine-(R)-S-oxide-reductase-MsrB	unknown	unknown	gnl|CDD|376583
NZ_CP019352.1|WP_076733014.1|1622918_1625366_+|endopeptidase-La	unknown	unknown	gnl|CDD|223542
NZ_CP019352.1|WP_076733012.1|1622052_1622622_-|RNA-polymerase-sigma-factor	unknown	unknown	gnl|CDD|224511
NZ_CP019352.1|WP_076732997.1|1612533_1613910_-|dihydrolipoyl-dehydrogenase	unknown	unknown	gnl|CDD|235798
NZ_CP019352.1|WP_076733001.1|1615279_1616116_+|M48-family-metallopeptidase	unknown	unknown	gnl|CDD|320690
NZ_CP019352.1|WP_076733003.1|1616170_1617454_+|MFS-transporter	unknown	unknown	gnl|CDD|341035
NZ_CP019352.1|WP_076733016.1|1625370_1626585_+|LysM-peptidoglycan-binding-domain-containing-protein	unknown	unknown	gnl|CDD|366664
NZ_CP019352.1|WP_076732995.1|1611822_1612461_+|PorT-family-protein	unknown	unknown	gnl|CDD|372635
NZ_CP019352.1|WP_076733020.1|1627205_1628225_+|type-IX-secretion-system-protein-PorQ	unknown	unknown	unknown
NZ_CP019352.1|WP_076733010.1|1621486_1622053_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP019352.1|WP_076733004.1|1617488_1618238_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP019352.1|WP_076733009.1|1620411_1621509_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP019352.1|WP_076733023.1|1629160_1630102_+|hypothetical-protein	unknown	unknown	gnl|CDD|379536
NZ_CP019352.1|WP_076733022.1|1628336_1628984_+|AhpC/TSA-family-protein	unknown	unknown	gnl|CDD|239268
NZ_CP019352.1|WP_083678248.1|1626625_1627156_+|LysM-peptidoglycan-binding-domain-containing-protein	unknown	unknown	gnl|CDD|182727
NZ_CP019352.1|WP_076732998.1|1614175_1614577_-|peptide-methionine-(R)-S-oxide-reductase-MsrB	unknown	unknown	gnl|CDD|376583
NZ_CP019352.1|WP_076732991.1|1610484_1611078_+|porin-family-protein	unknown	unknown	gnl|CDD|379226
NZ_CP019352.1|WP_076733024.1|1630246_1630942_+|(d)CMP-kinase	unknown	unknown	gnl|CDD|234579
NZ_CP019352.1|WP_076732993.1|1611156_1611573_+|type-II-3-dehydroquinate-dehydratase	unknown	unknown	gnl|CDD|376496

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP019352.1|WP_076733012.1|1622052_1622622_-|RNA-polymerase-sigma-factor	gnl|CDD|224511	COG1595, RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription].	9.84905e-34
NZ_CP019352.1|WP_076733014.1|1622918_1625366_+|endopeptidase-La	gnl|CDD|223542	COG0466, Lon, ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones].	0
NZ_CP019352.1|WP_076733022.1|1628336_1628984_+|AhpC/TSA-family-protein	gnl|CDD|239268	cd02970, PRX_like2, Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.	1.61435e-36
NZ_CP019352.1|WP_076732997.1|1612533_1613910_-|dihydrolipoyl-dehydrogenase	gnl|CDD|235798	PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed.	0
NZ_CP019352.1|WP_076733001.1|1615279_1616116_+|M48-family-metallopeptidase	gnl|CDD|320690	cd07331, M48C_Oma1_like, Peptidase M48C, integral membrane endopeptidase. This subfamily contains peptidase M48C Oma1 (also called mitochondrial metalloendopeptidase OMA1) protease homologs that are mostly uncharacterized. Oma1 is part of the quality control system in the inner membrane of mitochondria, with its catalytic site facing the matrix space. It cleaves and thereby promotes the turnover of mistranslated or misfolded membrane proteins. Oma1 can cleave the misfolded multi-pass membrane protein Oxa1, thus exerting a function similar to the ATP-dependent m-AAA protease for quality control of inner membrane proteins; it cleaves a misfolded polytopic membrane protein at multiple sites. It has been proposed that in the absence of m-AAA protease, proteolysis of Oxa1 is mediated by Oma1 in an ATP-independent manner. Oma1 is part of highly conserved mitochondrial metallopeptidases, with homologs present in higher eukaryotes, eubacteria and archaebacteria, all containing the zinc binding motif (HEXXH). It forms a high molecular mass complex in the inner membrane, possibly a homo-hexamer.	8.00817e-84
NZ_CP019352.1|WP_076733016.1|1625370_1626585_+|LysM-peptidoglycan-binding-domain-containing-protein	gnl|CDD|366664	pfam01476, LysM, LysM domain. The LysM (lysin motif) domain is about 40 residues long. It is found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. The structure of this domain is known.	1.52656e-13
NZ_CP019352.1|WP_076732995.1|1611822_1612461_+|PorT-family-protein	gnl|CDD|372635	pfam13568, OMP_b-brl_2, Outer membrane protein beta-barrel domain. This domain is found in a wide range of outer membrane proteins. This domain assumes a membrane bound beta-barrel fold.	3.74709e-23
NZ_CP019352.1|WP_076733023.1|1629160_1630102_+|hypothetical-protein	gnl|CDD|379536	pfam14281, PDDEXK_4, PD-(D/E)XK nuclease superfamily. Members of this family belong to the PD-(D/E)XK nuclease superfamily.	0.00572862
NZ_CP019352.1|WP_083678248.1|1626625_1627156_+|LysM-peptidoglycan-binding-domain-containing-protein	gnl|CDD|182727	PRK10783, mltD, membrane-bound lytic murein transglycosylase D; Provisional.	7.50208e-17
NZ_CP019352.1|WP_076732998.1|1614175_1614577_-|peptide-methionine-(R)-S-oxide-reductase-MsrB	gnl|CDD|376583	pfam01641, SelR, SelR domain. Methionine sulfoxide reduction is an important process, by which cells regulate biological processes and cope with oxidative stress. MsrA, a protein involved in the reduction of methionine sulfoxides in proteins, has been known for four decades and has been extensively characterized with respect to structure and function. However, recent studies revealed that MsrA is only specific for methionine-S-sulfoxides. Because oxidized methionines occur in a mixture of R and S isomers in vivo, it was unclear how stereo-specific MsrA could be responsible for the reduction of all protein methionine sulfoxides. It appears that a second methionine sulfoxide reductase, SelR, evolved that is specific for methionine-R-sulfoxides, the activity that is different but complementary to that of MsrA. Thus, these proteins, working together, could reduce both stereoisomers of methionine sulfoxide. This domain is found both in SelR proteins and fused with the peptide methionine sulfoxide reductase enzymatic domain pfam01625. The domain has two conserved cysteine and histidines. The domain binds both selenium and zinc. The final cysteine is found to be replaced by the rare amino acid selenocysteine in some members of the family. This family has methionine-R-sulfoxide reductase activity.	5.42601e-78
NZ_CP019352.1|WP_076732991.1|1610484_1611078_+|porin-family-protein	gnl|CDD|379226	pfam13505, OMP_b-brl, Outer membrane protein beta-barrel domain. This domain is found in a wide range of outer membrane proteins. This domain assumes a membrane bound beta-barrel fold.	7.81516e-07
NZ_CP019352.1|WP_076733024.1|1630246_1630942_+|(d)CMP-kinase	gnl|CDD|234579	PRK00023, cmk, (d)CMP kinase.	1.54662e-118
NZ_CP019352.1|WP_076732993.1|1611156_1611573_+|type-II-3-dehydroquinate-dehydratase	gnl|CDD|376496	pfam01220, DHquinase_II, Dehydroquinase class II.	4.25396e-80
NZ_CP019352.1|WP_076733000.1|1614576_1615056_-|peptide-methionine-(R)-S-oxide-reductase-MsrB	gnl|CDD|376583	pfam01641, SelR, SelR domain. Methionine sulfoxide reduction is an important process, by which cells regulate biological processes and cope with oxidative stress. MsrA, a protein involved in the reduction of methionine sulfoxides in proteins, has been known for four decades and has been extensively characterized with respect to structure and function. However, recent studies revealed that MsrA is only specific for methionine-S-sulfoxides. Because oxidized methionines occur in a mixture of R and S isomers in vivo, it was unclear how stereo-specific MsrA could be responsible for the reduction of all protein methionine sulfoxides. It appears that a second methionine sulfoxide reductase, SelR, evolved that is specific for methionine-R-sulfoxides, the activity that is different but complementary to that of MsrA. Thus, these proteins, working together, could reduce both stereoisomers of methionine sulfoxide. This domain is found both in SelR proteins and fused with the peptide methionine sulfoxide reductase enzymatic domain pfam01625. The domain has two conserved cysteine and histidines. The domain binds both selenium and zinc. The final cysteine is found to be replaced by the rare amino acid selenocysteine in some members of the family. This family has methionine-R-sulfoxide reductase activity.	4.14884e-76
NZ_CP019352.1|WP_076733003.1|1616170_1617454_+|MFS-transporter	gnl|CDD|341035	cd17482, MFS_YxiO_like, Bacillus subtilis YxiO, Listeria monocytogenes BtlA, and similar transporters of the Major Facilitator Superfamily. This family is composed of Bacillus subtilis MFS-type transporter YxiO, and similar proteins including Listeria monocytogenes BtlA. The function of B. subtilis YxiO is still unknown, and L. monocytogenes BtlA is a putative secondary transporter involved in bile tolerance and general stress resistance. This family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	7.53608e-87

Protein sequences

>NZ_CP019352.1|WP_076733005.1|1618372_1619566_+|hypothetical-protein
MRKIVLPFFALFLTVFLFTCENEPLDPAFETEVPSTGASFECLTASQAYAVATLNFSTWDGVSESQYTTLCTALTNAIQGVIDTCGDPDNNLQTLLGTYGDCSEPIDPSSCEGVTIAVSVAANNYNNATEEFLSQACNVYISVLQDQIDVCGDDDGSIQATIDALGDCSSTSGLVLLKKVVHTYSATDTFTSEFTYEGNKIKTVIFTDVDAGSTQTETETYIYENEILTRVDYEYTNASDSYEEFEYNSSNQLINTVLYNPSLNEAQKWEYTYNTDGTILVKNYTGDLTSQTNLLEEYTLTFENGNLISENFVNSSYTHSYDNMNGFFKNIHQREMLNIHFSGGVDLNNPTSANYTDGAGNSETETTSYTYNSDNYPESSTTSVDGVEDFTSVYTYY
>NZ_CP019352.1|WP_076733004.1|1617488_1618238_+|hypothetical-protein
MKLNTLTSIFSIALFAIFFVSCENEPLEGFDFENNIIVDPISNNDSVTPVEGENIEVEASTGDYWPTQVGYVWNFNTTTYGNTISEISGTTVFGDETYFEYDNFMGQDSFYIRKDGSNYYVAQDISGSNVNGYTVAAPVIKVLLLKDNLEVGETYTQNINYTVSYTPDPGYPDFPDQNVNTTYVTEMIERDIAYEVGGVEYQNVIHIKLETIFSGNVVATSHYYFSKDIGPINFTQTTGNDAFLTSYEF
>NZ_CP019352.1|WP_076733003.1|1616170_1617454_+|MFS-transporter
MKNLQKGSKKLLNAWAFYDWANSVYTLTIASSIFPLFYGYIYPNKDELISVFQLKPTVLVSAVTAFTFLVVAFLSPLLSGIADYVGNKKVFMKLFCYIGGLGCIGLFWFSADAIHLSMLFYFMGLIGYWGSLVFYNSYLPDIAFPEQQDNISAKGFSLGYIGSVILLIINLAMVMSVEGEAALQMMRYSFITVGLWWMLFSQYTFYMLPKGVSTGHKVTKAVVFNGFKELKQVWKALNQNKRLKRYLNAFFVFSMAVQTIMLMAVYFGEKEIKWIDSDQKTMGLIASILVIQVVAILGAVLTSKASAKFGNIKTLIVINAFWMFLCFYAYFMVTPTQFYIAAGLVGFVMGGVQALARSTYSKFLPETDDTTSYFSFYDVAEKIGIVIGMTIFAIVDQISTMRNAILFLFIFFLVGIILLFRVPKENV
>NZ_CP019352.1|WP_076733001.1|1615279_1616116_+|M48-family-metallopeptidase
MKFKSSITLVLTLLIFFSCATNPFTGKSTLALPGTENSSLFPTSFAQYNQFLNENNVITGTTEAQMITRVGQRIAVAAERWLNANGNQGYLNDYQWDYNLVKDDAINAWCMPGGKIVFYTGILPVAENEAAIAAIMGHEVAHALANHGQQRMSAGMLQQIGAVAGNIVLKDDNDRALFNQAYGVGSQVGVMLPFSRSHETEADRIGLILTGIAGYNPDEAANLWRRMGEASGGQAPPEFLSTHPATATRIANLEALAPTAKAEAKKFGVQSFRPVTPY
>NZ_CP019352.1|WP_076733000.1|1614576_1615056_-|peptide-methionine-(R)-S-oxide-reductase-MsrB
MKKIALLVLTIFLFNCNGNAQDSKKEKKDYEITKTEAEWKQILSNEAYQVLRKAGTERPFSSALNKEYGAGVYVCAACETPLFNSEDKFDSGTGWPSFDREIKGNVEYSVDYNLGHARTEEHCATCGGHLGHVFNDGPSKTTGKRHCINGVALKFIPKK
>NZ_CP019352.1|WP_076732998.1|1614175_1614577_-|peptide-methionine-(R)-S-oxide-reductase-MsrB
MSDYNIKKSDKEWKDQLTDEEYRILREKGTERPHTGKYNLHFEEGTYKCAGCNQQLFESSSKFDAHCGWPSFDESIKGTVKYVLDKSHGMIRTEIVCSNCGGHLGHVFNDGPTETGTRYCVNSISVKFDSESK
>NZ_CP019352.1|WP_076732997.1|1612533_1613910_-|dihydrolipoyl-dehydrogenase
MSKYDIIVLGSGPGGYVAAIRASQLGFKTAIVEKENLGGICLNWGCIPTKALLKSAQVFEYLKHAEDYGLSVKEYDKDFNAVVKRSRGVAEGMSNGVKFLMKKNKIDVIDGFGKLKAGKKIDVDGKEYSADHIIIATGARSRELPSLPQDGKKVIGYRQAMSLPKQPKKIIVVGSGAIGVEFAYFYNSMGTEVTIVEYLDRIVPVEDEEVSKQLERSFKKNGIKVMTSAEVTSVDTSGEGVKATVKTKKGEEILEADIVLSAVGIKSNIENIGLEDVGIAVDRDKVLVNDYYQTNIPGYYAIGDITPGQALAHVASAEAILCVEKIAGMHVEAIDYGNVPGCTYCTPEIASVGLTEKQAKEKGFDIKVGKFPFSASGKASAGGNKEGFVKVIFDAKYGEWLGCHMIGAGVTDMIAEAVLGRKLETTGHEVLKAIHPHPTMSEAVMEAVADAYDEVIHL
>NZ_CP019352.1|WP_076732995.1|1611822_1612461_+|PorT-family-protein
MKKLILSTAVFISGLVFLNAQSDSKEVQFGVKGGLNSSTISGDDFGDLESRTSFNVGVLAEVPISERLSFQPEVFYSGQGFDVAENDQDNIFDTNDNIEYQLDYIQVPLLLKAYLVKGLSVEVGPQFGFKIHEELDFQPTNDGGDIEINSEDSYVKDFSTSVALGASYKFDSGLFVNGRYNFGVTDIFDDNTPFQGIDAKNNVLQVGLGFMF
>NZ_CP019352.1|WP_076732993.1|1611156_1611573_+|type-II-3-dehydroquinate-dehydratase
MKKIIIINGPNLNLLGKREPNIYGSLTFTEFFDTVKEKYPNVNLEYYQSNIEGEIIDKIQECGFNYDGIILNAAAYTHTSVGIGDAVKAIETPVVEVHISNTFSREEFRHQSFIAPNAKGVVLGFGLQSYELAIQSFL
>NZ_CP019352.1|WP_076732991.1|1610484_1611078_+|porin-family-protein
MKKLFFTAAIAVLGFTSVNAQEDVTVKGFEKGDVFISGAVGFGTEKTGDLDSNVFNIAPKAGYFVSNNIAVGLQAGFTSLSSDDNGVDTVDSNEYSVGAFGRYYFTPATQFSLFTELGVDYTSGDNKLTDVGYDGFDIAFAPGISYFVSKNFAIEASVGVLGYSTSEADFDGAESTDNFDVGLNLNDINFGVVYKFN
>NZ_CP019352.1|WP_076733009.1|1620411_1621509_-|hypothetical-protein
MKQLIQYKLLSILLLFPLVIFANVTNGKDGKYKKEKTITKSFNVKDNATLKVDNSYGNLDVVTWNGNTIDFEIKITTSGDDEDNVQQKLDGITVDFSNSPDLVTAVTKFSKNKNKSWWSWTNKNNVQMKINYIIKMPITNNVNLSNDYGNINLGTLEGRAELNCDYGKITTKELLADNNIINFDYSNNCYFEFIKSGKIYADYSGFTVSKTNSLEVIADYTKSKIDIAEEVTYNCDYGGITIDKANSIKGNGDYLTVIVGDVFKHLDITADYGSIKISKLHKSVKNVSVDSDYVGIKIGYDRTFAFDFDIELEYGSLKDNDDNFKFIKKRIESSDRYYTGYNISQNSGNLVRINAEYGSVTFYEN
>NZ_CP019352.1|WP_076733010.1|1621486_1622053_-|hypothetical-protein
MKDDKLHQLFEKFQHDFDVETPNHGHKNRFLEKLNAQNNTQTIVAEKTNKNLWKPFLGIAATIVLLITLAFSFNTEPKIQDLASVSPEMANTQNFFTSVIAEELEKINSERTPETEALIKDAMSQMEILEIEYSQLKIDLTESGNDKRVIHAMIDNFWNRINILKSVLENIEGIKTFKLNTDETINTI
>NZ_CP019352.1|WP_076733012.1|1622052_1622622_-|RNA-polymerase-sigma-factor
MTLTNYNIEQLVELCKTNNQFAQLELYNRYYKAMYNTAYRIVKNSFEAEDVMQNAFLQAFSKLESLKDNKTFGAWLKRIVINKSIYHYNKSTKFDEVPLDDVLYKVEDTNGINEDYEFTTIQAKQVIETMKTLKDNYRIALTLHLIEGFDYEEISDIMRISSANCRTTISRAKESLRKKCKPWFAKKQY
>NZ_CP019352.1|WP_076733014.1|1622918_1625366_+|endopeptidase-La
MKKSNFISLDSLSLQDFDENSELIPLMTPEDEEQINNEQLPETLPILSLRNTVLFPGVVIPITAGRDKSIKLIDDANKGSKVIGVVSQKDEAIENPKAGDIHEIGTVARILKVLKMPDGNTTVIIQGKKRFSVAEVITEEPYINATVREVPEAKPAKVNKEFQAITDSIKDLALKIIKDSPNIPSEASFAIKNIESDSFLINFVSSNMNLPVKDKQKLLETNDLKERALETLKFMNIELQKLELKNDIQSKVQSDMNQQQREYFLNQQMKTIQEELGGGNAEEMEDMKKRAKLKKWDDKVGEHFEKELSKMQRMNPQVAEYSIQRNYLDLFLDLPWNEFSKDKFDLKRAKKILDRDHYGLDDVKKRIIEYLAVLKLRNDMKSPILCLYGPPGVGKTSLGKSIAEALGREYVRMSLGGLRDEAEIRGHRKTYIGAMPGRIIQSLKKAGTSNPVFVLDEIDKLSNSNQGDPSSALLEVLDPEQNSEFHDNFLEMGYDLSKVMFIATSNSLANIQPALRDRMEIINVTGYTIEEKAEIGKRHLLPKQLKEHGLTDNDLKLGKPQIEKIVEGYTRESGVRSLEKQIAKMVRYAAMNIAMEEEYNLKVNNDTIVEVLGGPKLERDKYENNDVAGVVTGLAWTRVGGDILFIESILSKGKGSMSITGNLGKVMKESATIAMEYIKANADEFGINSEVFDKYNVHIHVPEGATPKDGPSAGVTMLTSLVSLFTQRKVKKSLAMTGEITLRGKVLPVGGIKEKILAAKRAKIKEILLCEDNRRDIEEIKPDYLKGLTFHYVSDMKDVLKLAITKQKVKGAKKL
>NZ_CP019352.1|WP_076733016.1|1625370_1626585_+|LysM-peptidoglycan-binding-domain-containing-protein
MKAIAIGLFGLLSIGTFAQEHEVSEEFLPVNVEGKEAYMSTKTGEFTFREHDKTDPTQLKTTPSGVVYTDISTHTVKKGETLSTIAKKNEVSVAEIKAHNNITNGNLKIGSSLKIVKKILVKSSSPVVSYVGRERIIAKLRPGESPGQFAPPPSIEDVENKVIKTEKTQEKASATVYKAETSIKNPIFGLEDDAKETKAVVENEAALNKKERLAKLKAEMKALEAELEKEEEKEEEIESKISAPVETVEEIVEEKIDANPSIESKEQETNALEKVKASNPNAKIEEDKEGKKVIVFENKPLEKEESTAEKAKQAIASVRKTEKEIEASKKIDKEKEALIESTSKESNEDINNKEDVSYYTVEKGNSLWSIARMHNMTVDDVKKLNNLKNNNLTIGQKLKVTPKK
>NZ_CP019352.1|WP_083678248.1|1626625_1627156_+|LysM-peptidoglycan-binding-domain-containing-protein
MKRTILALSCLVGISAFAQDNLVDVVIDGKPAKMNTTTGVYTFTNGAPDSYTSNNTVTTVTEKANPNVEAKTVLDSKIHTVVKGETLYSISKKYEISMAHIKSLNNLSSNVLSVNQQLKIGYNTKAEISNNSVYIVKKGDSLFGIAKREGLSVAELKQLNGLETNIIKVGQELKLK
>NZ_CP019352.1|WP_076733020.1|1627205_1628225_+|type-IX-secretion-system-protein-PorQ
MVKKIALFCFTLISSYCFAQLGGQSTYQFLNLVSSPRQAALGGKVLTNIDWDVTQGIYNPSAINVEMDNQFALNYTSYLGGVKYGTAAYAYTVDRRVQTYHAGITYINYGDFDGYDEDGNATGTFSGAETALSFGYALQIGYSDFYAGANIKLINSSLEQYNSFGAATDLALMYIDERLEFQGTLVVRNLGTQITTYAGTQESLPFEVAIGLSQTLENIPLRWHLTFDNLQQWPIGEPNPARATTDLEGNQTQEKVGFLAQVVRHTILGAELFPSKGFNIRLGYNFRRAEELRIEDQRNFSGLSAGFSVKLNKMRFSYTHAKYTAASNSNFFGLQIDLR
>NZ_CP019352.1|WP_076733022.1|1628336_1628984_+|AhpC/TSA-family-protein
MGDLKKQTDAKIEAGRKAKPEFMKGVDEVIAKAKAFKEGQNALKVGDKAPDFTLPNAKGESISLNKLLNKGPVVVTFYRGDWCPYCNLQLRALQAKLNQIHELGANLVAISPQVPDGSLTESEISKMEFIVLSDQNANVASKYGVAWEVPEFLMEHMRIDRGLDLETINNGNANILPIPGTFIIGEDGDVKWNYVNVDYRTRSEPDEIIEALKKI
>NZ_CP019352.1|WP_076733023.1|1629160_1630102_+|hypothetical-protein
MQETSEHAILPIESVQERDVDLILLEELSTENSFCNWFISELNLPKFSSSNGTWRSITDFGLGETDLLFSYNSNNEKVFVLIENKLDATFQDEQFIRYEKRAKEYVRKKHCDNAYCILIAPNLYCKNQNDFENYISYETISRLFEKQNTKRGLFKSQLIQIAVEKLRRGYQPVNSEPVQKFWHDYWNFKNDKIPSLTMKKPSIVPHNSDWPMLYDNDLKGIIFYHKLAQGNSDATFQNPTENIELKIKENLQEDFKFIKHSKSFSVRISSEKIDRTKDFNKQIKQVEIGMKNLEKLRDWIKEIGINNWLQQRV
>NZ_CP019352.1|WP_076733024.1|1630246_1630942_+|(d)CMP-kinase
MQKITIAIDGFSSTGKSTVAKQLAKHLGYIYVDTGAMYRAVTLFTMQNGFIDKEHFNINALVEKLRNITISFKFNKDLGFAEVYLNGVNVEKEIRTLEVSSFVSKVAAIPEVRYQLVKQQQQMGKDKGVVMDGRDIGTVVFPYAELKLFMIASAEKRATRRFNELIERGDNVKYEDVLRNVQERDYIDSNREDSPLRKAEDAIEIDNSDLSLEEQFNKVLHLVEKTFNKIK

Crispr_ID: NZ_CP019352_3

• CRISPR_ID: NZ_CP019352_3
• CRISPR_location: 1932731-1932906
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 2 spacers

Consensus repeat of NZ_CP019352_3

Consensus_repeat	Method
TTTAGTTACAGCAGGAATATCAATAACTCTTGTTGTTG	PILER-CR

spacers of NZ_CP019352_3

>3.1|1932769|31|NZ_CP019352|PILER-CR
GAGGTGTTACCATAACAGTTCTTTTAACCTC
>3.2|1932838|31|NZ_CP019352|PILER-CR
GAGGTGTTACCATTACTTGTCTAGTAACCTC

CRISPR arrays and Neighbor proteins around NZ_CP019352_3

CRISPR arrays

The CRISPR arrays of NZ_CP019352_3

>merge|NZ_CP019352|3|1932731-1932906|PILER-CR
TTTAGTTACAGCAGGAATTTCAATAACTCTTGTTGTTGGAGGTGTTACCATAACAGTTCTTTTAACCTCTTTAGTTACAGCAGGAATATCAATAGCTCTTGTTGTTGGAGGTGTTACCATTACTTGTCTAGTAACCTCTTTAGTTACAGCAGGAATATCTATTACTCTTGTTGTTG

>NZ_CP019352|3|1|1932731-1932906|PILER-CR
TTTAGTTACAGCAGGAATTTCAATAACTCTTGTTGTTG	GAGGTGTTACCATAACAGTTCTTTTAACCTC
TTTAGTTACAGCAGGAATATCAATAGCTCTTGTTGTTG	GAGGTGTTACCATTACTTGTCTAGTAACCTC
TTTAGTTACAGCAGGAATATCTATTACTCTTGTTGTTG

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019352.1|WP_076733301.1|1937160_1939680_+|TonB-dependent-receptor	unknown	unknown	gnl|CDD|379720
NZ_CP019352.1|WP_076733307.1|1945066_1946464_+|class-II-fumarate-hydratase	unknown	unknown	gnl|CDD|234779
NZ_CP019352.1|WP_076733305.1|1943234_1944272_-|sensor-histidine-kinase	unknown	unknown	gnl|CDD|340400
NZ_CP019352.1|WP_076733302.1|1940135_1941113_-|mechanosensitive-ion-channel-family-protein	unknown	unknown	gnl|CDD|366370
NZ_CP019352.1|WP_156875589.1|1935583_1936694_+|peptide-chain-release-factor-2	unknown	unknown	gnl|CDD|234799
NZ_CP019352.1|WP_076733292.1|1924549_1925569_+|transporter	unknown	unknown	gnl|CDD|379259
NZ_CP019352.1|WP_076733300.1|1936706_1937048_+|arsenate-reductase-(glutaredoxin)	unknown	unknown	gnl|CDD|239332
NZ_CP019352.1|WP_076733288.1|1918923_1920378_-|oligosaccharide-flippase-family-protein	unknown	unknown	gnl|CDD|240533
NZ_CP019352.1|WP_076733296.1|1929289_1931428_-|S9-family-peptidase	unknown	unknown	gnl|CDD|224684
NZ_CP019352.1|WP_076733297.1|1931497_1931821_+|YbaB/EbfC-family-nucleoid-associated-protein	unknown	unknown	gnl|CDD|184771
NZ_CP019352.1|WP_076733303.1|1941185_1941998_-|alpha/beta-hydrolase	unknown	unknown	gnl|CDD|225375
NZ_CP019352.1|WP_076733289.1|1920411_1921695_-|glycosyltransferase-family-4-protein	unknown	unknown	gnl|CDD|340825
NZ_CP019352.1|WP_083678257.1|1924184_1924442_-|DUF4834-family-protein	unknown	unknown	gnl|CDD|374375
NZ_CP019352.1|WP_076733304.1|1942120_1943086_+|lipid-A-deacylase-LpxR-family-protein	unknown	unknown	gnl|CDD|378338
NZ_CP019352.1|WP_076733295.1|1928176_1929217_-|cysteine-synthase-family-protein	unknown	unknown	gnl|CDD|107204
NZ_CP019352.1|WP_076733299.1|1934408_1935428_-|threonine-aldolase	unknown	unknown	gnl|CDD|178323
NZ_CP019352.1|WP_076733294.1|1926776_1928036_-|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl|CDD|99747
NZ_CP019352.1|WP_076733293.1|1925574_1926696_+|GTP-cyclohydrolase	unknown	unknown	unknown
NZ_CP019352.1|WP_076733290.1|1921687_1924153_-|YfhO-family-protein	unknown	unknown	gnl|CDD|370572
NZ_CP019352.1|WP_076733306.1|1944262_1944850_-|response-regulator	unknown	unknown	gnl|CDD|381085

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP019352.1|WP_076733301.1|1937160_1939680_+|TonB-dependent-receptor	gnl|CDD|379720	pfam14905, OMP_b-brl_3, Outer membrane protein beta-barrel family. This family includes proteins annotated as TonB dependent receptors. But it is also likely to contain other membrane beta barrel proteins of other functions.	6.12776e-105
NZ_CP019352.1|WP_076733305.1|1943234_1944272_-|sensor-histidine-kinase	gnl|CDD|340400	cd16923, HATPase_VanS-like, Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Enterococcus faecium VanS. This family includes the histidine kinase-like ATPase (HATPase) domains of various two-component sensor histidine kinase (HKs) such as Enterococcus faecium VanS HK of the VanS-VanR two-component regulatory system (TCS) which activates the transcription of vanH, vanA and vanX vancomycin resistance genes. It also contains Ecoli YedV and PcoS, probable members of YedW-YedV TCS and PcoS-PcoR TCS, repectively. Proteins having this HATPase domain also contain a histidine kinase dimerization and phosphoacceptor domain (HisKA); most also have a HAMP sensor domain.	0.000270071
NZ_CP019352.1|WP_076733302.1|1940135_1941113_-|mechanosensitive-ion-channel-family-protein	gnl|CDD|366370	pfam00924, MS_channel, Mechanosensitive ion channel. Two members of this protein family of M. jannaschii have been functionally characterized. Both proteins form mechanosensitive (MS) ion channels upon reconstitution into liposomes and functional examination by the patch-clamp technique. Therefore this family are likely to also be MS channel proteins.	3.68741e-39
NZ_CP019352.1|WP_156875589.1|1935583_1936694_+|peptide-chain-release-factor-2	gnl|CDD|234799	PRK00578, prfB, peptide chain release factor 2; Validated.	6.52821e-176
NZ_CP019352.1|WP_076733292.1|1924549_1925569_+|transporter	gnl|CDD|379259	pfam13557, Phenol_MetA_deg, Putative MetA-pathway of phenol degradation.	2.2598e-23
NZ_CP019352.1|WP_076733300.1|1936706_1937048_+|arsenate-reductase-(glutaredoxin)	gnl|CDD|239332	cd03034, ArsC_ArsC, Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.	2.35043e-48
NZ_CP019352.1|WP_076733288.1|1918923_1920378_-|oligosaccharide-flippase-family-protein	gnl|CDD|240533	cd13128, MATE_Wzx_like, Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins. Escherichia coli Wzx and related proteins from other gram-negative bacteria are thought to act as flippases, assisting in the membrane translocation of lipopolysaccharides including those containing O-antigens. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR).	3.53518e-24
NZ_CP019352.1|WP_076733297.1|1931497_1931821_+|YbaB/EbfC-family-nucleoid-associated-protein	gnl|CDD|184771	PRK14623, PRK14623, YbaB/EbfC family nucleoid-associated protein.	2.11339e-50
NZ_CP019352.1|WP_076733296.1|1929289_1931428_-|S9-family-peptidase	gnl|CDD|224684	COG1770, PtrB, Protease II [Amino acid transport and metabolism].	0
NZ_CP019352.1|WP_076733303.1|1941185_1941998_-|alpha/beta-hydrolase	gnl|CDD|225375	COG2819, COG2819, Predicted hydrolase of the alpha/beta superfamily [General function prediction only].	1.82835e-29
NZ_CP019352.1|WP_076733289.1|1920411_1921695_-|glycosyltransferase-family-4-protein	gnl|CDD|340825	cd03794, GT4_WbuB-like, Escherichia coli WbuB and similar proteins. This family is most closely related to the GT1 family of glycosyltransferases. WbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.	8.28298e-40
NZ_CP019352.1|WP_083678257.1|1924184_1924442_-|DUF4834-family-protein	gnl|CDD|374375	pfam16118, DUF4834, Domain of unknown function (DUF4834). This family consists of uncharacterized proteins around 90 residues in length and is mainly found in various Parabacteroides and Bacteroides species. Protein in this family are characterized by a strongly conserved KDEGEYVD motif on the C-terminal and a very divergent N-terminal. The function of this family is unknown.	5.37922e-07
NZ_CP019352.1|WP_076733304.1|1942120_1943086_+|lipid-A-deacylase-LpxR-family-protein	gnl|CDD|378338	pfam09982, DUF2219, Uncharacterized protein conserved in bacteria (DUF2219). This domain, found in various hypothetical bacterial proteins, has no known function.	1.99765e-67
NZ_CP019352.1|WP_076733295.1|1928176_1929217_-|cysteine-synthase-family-protein	gnl|CDD|107204	cd01561, CBS_like, CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.	1.44789e-125
NZ_CP019352.1|WP_076733299.1|1934408_1935428_-|threonine-aldolase	gnl|CDD|178323	PLN02721, PLN02721, threonine aldolase.	1.27963e-122
NZ_CP019352.1|WP_076733294.1|1926776_1928036_-|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	gnl|CDD|99747	cd06454, KBL_like, KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.	9.19339e-104
NZ_CP019352.1|WP_076733307.1|1945066_1946464_+|class-II-fumarate-hydratase	gnl|CDD|234779	PRK00485, fumC, fumarate hydratase; Reviewed.	0
NZ_CP019352.1|WP_076733290.1|1921687_1924153_-|YfhO-family-protein	gnl|CDD|370572	pfam09586, YfhO, Bacterial membrane protein YfhO. This protein is a conserved membrane protein. The yfhO gene is transcribed in Difco sporulation medium and the transcription is affected by the YvrGHb two-component system. Some members of this family have been annotated as glycosyl transferases of the PMT family.	1.11594e-06
NZ_CP019352.1|WP_076733306.1|1944262_1944850_-|response-regulator	gnl|CDD|381085	cd00156, REC, phosphoacceptor receiver (REC) domain of response regulators (RRs) and pseudo response regulators (PRRs). Two-component systems (TCSs) involving a sensor and a response regulator are used by bacteria to adapt to changing environments. Processes regulated by two-component systems in bacteria include sporulation, pathogenicity, virulence, chemotaxis, and membrane transport. Response regulators (RRs) share the common phosphoacceptor REC domain and different effector/output domains such as DNA, RNA, ligand-binding, protein-binding, or enzymatic domains. Response regulators regulate transcription, post-transcription or post-translation, or have functions such as methylesterases, adenylate or diguanylate cyclase, c-di-GMP-specific phosphodiesterases, histidine kinases, serine/threonine protein kinases, and protein phosphatases, depending on their output domains. The function of some output domains are still unknown. TCSs are found in all three domains of life - bacteria, archaea, and eukaryotes, however, the presence and abundance of particular RRs vary between the lineages. Archaea encode very few RRs with DNA-binding output domains; most are stand-alone REC domains. Among eukaryotes, TCSs are found primarily in protozoa, fungi, algae, and green plants. REC domains function as phosphorylation-mediated switches within RRs, but some also transfer phosphoryl groups in multistep phosphorelays.	5.50925e-07

Protein sequences

>NZ_CP019352.1|WP_076733297.1|1931497_1931821_+|YbaB/EbfC-family-nucleoid-associated-protein
MFGDLAGMMGKLKETQQKVEDTKERLNTVLVDEKSNDGLLKVTLTANRTLKTIAIDDSLLEDKEQLEDYLIITLNKAIEKATKINEAELAAVAKDGMPNIPGMDMFK
>NZ_CP019352.1|WP_076733296.1|1929289_1931428_-|S9-family-peptidase
MKIITPVLVIWLIFVISCKQNLKMSETTITVNPPIAKKIEKTLEKHGDIRIDNYFWMNDREDENVINHLNKENEYTSSVLKHTEIFQKELFEEMKGRIKEDDSSVPYKLNGYWYITKFEKGKDYPIYTRKKDSLQAEEEMIFDCNEMAKGYSYFKLGGIAISPDNTMASFAVDTVSRRQYTIQIKNLKTGELFSDKIENTTGSSTWANDNKTLFYTKKDDVTLRSDKIYKHQLNTDTSKDILVYHEKDDTFNSFVYKTKSKKYIVIGSSSTLTSEYRILEANNPDGEFKVFQERVRELEYSIAHYNDSFYIVTNKDNATNFKLQKTPESNTTKENWIDVLPHRNDVLLEDIEIFKDYLVVNERLNGLNKIRIISWNGDQDYYLPFHSETYTANLGNNPDFNSEELRYNYNGLTTPSSVIDYNFKTKVKTIKKEQEVLGGKFNKDNYESKRIWATAKDGVKIPMSIVYKKGIKLNGKNPVLQYAYGSYGSTIDPYFSTIRLSLLDRGFIYAISHIRGGEYLGREWYENGKLLTKMNTFTDFIDCSKFLIEENYTSPEHLYAMGGSAGGLLMGTVINLNPELYKGVIAAVPFVDVVTTMLDDTIPLTTGEYDEWGNPNEKKYYDYMKSYSPYDNVVSKNYPNLLVTTGLHDSQVQYFEPAKWVAKLRELKTDNNKLLFHIDMEAGHGGASGRFESLKEVALEYAFLFDLEGIDH
>NZ_CP019352.1|WP_076733295.1|1928176_1929217_-|cysteine-synthase-family-protein
MAHNKQVFDNVLDLIGNTPMIKLKKMTSEFKGNFLAKVEAFNPGHSSKDRIALYIIEQAEKQGILKPGDTIIETTSGNTGFSIAMVSVIKGYDCILAVSSKSSADKIDMLKNMGARVYVCPANVSADDPRSYYQVAKRLHDEIKGSVYINQYFNQLNMDAHYASTGPEIWNQTNGKITHLIACSGTGGTISGTAKYLKEQNPNVKVIGVDAFGSVLKKYHETREFDEKEIYPYRIEGLGKNLIPTATDFDAIDKFVKVTDEESAHTAREIARTEGLFVGYTSGAAMQAIKQLDAEGEFKANDTVVVIFPDHGSRYMSKVYSDKWMNEQGFFDSQNVEAAESIQYIK
>NZ_CP019352.1|WP_076733294.1|1926776_1928036_-|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme
MKDLFAKIYKDKGPLGKWAEQAEGYFVFPKLEGQISNRMKFQGKDVITWSINDYLGLANHPEVRKVDAEAAAEYGSAYPMGARMMSGHTELHEQLQDELAAFVNKEAAYLLNFGYQGMVSTVDALVAKDDIIVYDVDAHACIIDGVRLHHGKRFTYKHNDIESLEKNLERATKMAETTGGGILVISEGVFGMRGEQGRLKEIVALKKKFNFRLFVDDAHGFGTLGKTGAGAGEEQGVQDDIDVYFATFAKSMASTGAFIAADREIIDYLKYNLRSQMFAKSLQMQLVVGALKRLDMLRTMPELKENLWKIVNALQSGLKERGFDIGTTQSCVTPVYLKGSIPEAMALVRDLRENYGIFCSIVVYPVIPKGLILLRMIPTATHTLQDVAETLDAFDAIRDRLENGTYKRMSAALIKAMGE
>NZ_CP019352.1|WP_076733293.1|1925574_1926696_+|GTP-cyclohydrolase
MITTKIVKTKKDLKSFVKFPFSLYKGSKYWVPPIISQEMETFNTDKNPIFNDAEATLILAYKNEKLVGRVAAIINWLEVKNQNQLKMRFGWFDFIDDLEVSKKLIEEVIKIGKQHNLKFTEGPVGFSNLDKVGVMTEGFNQISNMITWYNHEYYVKHYEALGFKIEKSYSESKFPFENVKPDFFKKAQELIKRRYKLKALQLTKTSDVMPYADKMFDLFNASYGKLSSFVEITDIQKEYFKKKFISFVNPEYIKFVVDENDNMVAFAIVMPRFAYALQEMNGKLFPFGFAKLLKAKKSSKDVVFYLIGVHPDYQNKGVHAVIFNEYYETFKTKGIVDCYRTPELEDNEAIHKIWKHFNPKVIKRRKTYRKNIE
>NZ_CP019352.1|WP_076733292.1|1924549_1925569_+|transporter
MLLNKTYLTIVLCIASLTAYAQYTEVINSNRPGVSRSAFSVGTNVVQFEAGPYTVKEEHTPLKYDVSGFGVDFAARYGLLLPQLEINIEGIYQNDTQTDYRSSIPSELERSNFKQLTLGAKYLVYDPYKNAEEEKPNIFSYHANRRFKWKNLIPAVAVYVGANFDSKDNPYTAPGIEGFSPKVMLATQNNFSSGWVFVTNFSKDRIGSDFSDFQYILTLTKAINEQWVLFGETQGIHSDFYADNLFRFGGAYLWNKNFQLDTAVTFNTKDTPSVFSLNLGVSYRLDFHKDPGLDNGTSAEEEAERKANKKRNKKNKKNGDDTSNNKRKKETQEIDFDDN
>NZ_CP019352.1|WP_083678257.1|1924184_1924442_-|DUF4834-family-protein
MLKVLLIILLIYLGIKIISKYFGPSILKYFTKKAVERFGGQFRDFSNQKQQQPQQKTGEISIDKMPENKTSNKTVGEYVDYEEID
>NZ_CP019352.1|WP_076733290.1|1921687_1924153_-|YfhO-family-protein
MQSNIKKILPHILVFVGFIILSLAYFSPVLQGKQILQSDILHYNGMAKQQRDFKAATGEETYWTNSAFGGMPTYQLGARYPYTYIKSLDLGLRFLPRPADYLFLYFAGFYILLLCLKVNFKLATLGALAFGFSTYLIIIIGVGHNSKAHAIAYMPLVLSGIILTFRKKYILGFVVTAIAMGLELVANHLQMTYYLMFLVIVLGIVYLIDAYKKSVLPHFFKSVGILLAAVFLAIGLNAANIMATIEYGEESTRSKTNLTINPDGSAKKDISSGLAKEKITEYSYGYLETFNLFIPRFLGGGMGEDLGKESEFYNFYRSQGVPPLEAAEASKGVPTYWGDQPIVEAPAYIGAVVLFLFVFALFIVKGRLKWWLVSGSILALLLSYGKNLGFLTDFFINFVPLYDKFRAVTSIQVILELCIPVLAIFGLVKLFNDFEKNEEKLKALKFSTLITAGLCATFLIFRYTGIVLDFEGIRDASWAEGGGQPFVDAIVADRKSIFTKDTLRTLFLVLLSAGTVYLFLKQKLTEGKVVIVFAVLILFDLVGVDRRYVNTENFVSSREVQSPFKPNNADKKILSEKGNFRVYDVSSGAGRAISQNVNDMTSGATSAPYFHNTVNGYHAAKLKRFDELSDFFPFTRHPEMLNMFNIKYIISEDESNQPYPYLNTEANGNAWFVEKITKVNSADEEMLSLLDLNTKNEAVTLTSNINKNTFKLDSLASIKVLDYKPNYIKYESVNNNDGYAVFSEMYYKNGWNAYIDNKESDYNRVNYLLRGMEIPKGKHIIEFKFEPQVVKTGGSIALASSIALILIALGGLFFNFRRKNE
>NZ_CP019352.1|WP_076733289.1|1920411_1921695_-|glycosyltransferase-family-4-protein
MNKKKVLIITYYWPPAGGPGVQRWLKFVKYLPQYGIEPIVYCPSNPIYPQTDKSLLKEVPNGITILKQPINEPYKVANFFSKDSKTISKGIIPEEKKQTLMQKAMLFIRGNFFIPDARKNWIKPSVRYLSTYIADFNIDTVITTGPPHSLHIIGLKLKKQLDINWIADFRDPWTTIGYHKQLKLTNVAANKHKKLEKEVLNTANTIIVTSEVTKKEFQDITSKQIEVITNGYDIEKESDIVLDTQFTLSHIGSFLSKRNPEILWQSLHELIKEHQDFAKYFRLNLVGLVGEEIIKTIERYGLTNYVNNIGYVSHIESVKYQKKSQLLLLVEIDSQDTKAIIPGKLFEYLVSNRPIIAIGPTGSDVESIIKETKTGDYFYYSDLETLKSKILSHFNAFKSKNLEVSPVGVEKYSRENLTKKLSEVIFK
>NZ_CP019352.1|WP_076733288.1|1918923_1920378_-|oligosaccharide-flippase-family-protein
MGIVIKQSIQNTITTYLGFVVGAVNALFLYTQFLTPENYGLIGYLLSTANVMMPLFMFGVSNTLVKFFSSYKTKKQQNGFLTLMLFLPLLVIIPIGFIGVLGYQAISGWLSSENEIIKNYTYLIYIIAVAMAYFEIFFAWSKIHYKSAFGNIMKEVFHRVCIFILLFALHYKLLTVDQFIIAVAIVYVIRMLIMKFYAFSLRIPKLDFNFNFNVSSVLKYSFLIIIAGSVAMFMLDLDKFMLGKLIVIDNIAYYNVAIFVATVIAVPSRAMHQITYPLTAKYLNENDKVSLVNLYKKSSLNLIIVSGIIFTLVIVNINDLYALLNPEYSKALYVVIIISIVKLLDNLLGINNSIIFNSNYYRIILFFGVLIILVAVLLNYLLIPIYNINGAAIATFLAMFLYGSLKLWYVNKKFKMHPFSVYTFYTLLLILLLSLAFYFWDFGFHSIINIIIKSTVVVALYGFIVYRFNLSEDITTILNKLLKQ
>NZ_CP019352.1|WP_076733299.1|1934408_1935428_-|threonine-aldolase
MKIDLRSDTLTKPSKGMLEAMMQAKVGDDVYKEDETVNKLEERVAKLFGKPHALFFPSGTMANQAAIKLHTNPGDQVICDKYAHIFNYEGGGASFNSGVSCKLLDGERGMFTAKQVEAAINPPDFYHSPLTTLVAVENTTNKGGGACWDLEELKRIKKVCETNNLGYHLDGARLWNAMVEKNETAKQYGEIFNTISVCFSKGLGCPVGSVLVGDKKLMEKSIRIRKIFGGGMRQVGFLAAAGLYALDNNINLLKEDHKKAKEIALVLNKVNYVDKVEKVETNIVIFTLNNRFSDDVFLETLKTKNVFISNMGQGKLRIVTHLDYNLKMHESLLNILLNL
>NZ_CP019352.1|WP_156875589.1|1935583_1936694_+|peptide-chain-release-factor-2
MITQDQIKDLSQRLTKLRQYLDIDAKLIEISNEEEQTFSPDFWNDSKAAEIIMKSLREKKKWVEDYKSANTFVEDLEVIYDFFKENEATATDVESRYTKAQTIIEDLEFKNMLSEEGDGLSAVLQITAGAGGTESCDWAQMLMRMYLMYAEKNGFKVKELNFQEGDVAGIKTVTIEIEGDYAFGWLKGENGVHRLVRISPFDSNAKRHTSFASVYVYPLVDDSIEIEINPADIEIVTARSSGAGGQNVNKVETKVQLTHKPTGIQISCSETRSQHDNRSRAMQMLKSQLYEIELQKQLAQREDIEASKMKIEWGSQIRNYVMHPYKLVKDVRTAHETGNVDAVMDGDITPFLKAYLMMMGQQTTETDQL
>NZ_CP019352.1|WP_076733300.1|1936706_1937048_+|arsenate-reductase-(glutaredoxin)
MIKIYHNNRCSKSRSGLEILKKSGKDFQIVNYLENIPTKAELKSIINLLGIKPIDLVRKNEAIWKANYKNKELNDEIIINAMLENPKLIERPIVINDNKAVIGRPPENILNII
>NZ_CP019352.1|WP_076733301.1|1937160_1939680_+|TonB-dependent-receptor
MRKIIITSFLTIFLSFFAFAQKEFTVSGKIFEEGTNIPLEWATVVVTNPSDGKIVNGGTANEKGIFKFNVNAGTYNFSFDFISFKKVTINNKTISEDFNFGTIYLKEDTTTLEEVELIAEKTTVEIKLDKKVYNIGKDLTTAGGTVSDALNNVPSVTVDVEGAISLRGNENVRILINGKPSAMAGFGDSNILSQLPAEAIERVEVITSPSARYDAEGTAGILNIILRQKETLGFNGSVTLTAGNPDNVGVSAALNFRREKYNLFSNFGWRYFDAPRTSFLDVNYFDTTNDDGTINEPQFRRIIENQEVERLNRNYNANIGMEYFLDDTSSITGSLFYNFGSDADVSLNESERLNNNVIVEETLRREKETEKDNSYQIALNYVKTFGDDRDHKLTVDFQYENDNEDGFTYLNEDYVFTSQTNPEAFQIEQEFTDEKQKEYLVQADYVLPLGEDSRFEAGYRGNFENSVTDYQLDQENLLTGALEINESISNIFDYTENVNAIYTQYGSKLGKFSFLLGLRLENTQLKGKIDSRLTEQELNENFGFPIDTDFDNNYLGLFPTVNLIYNLNTTESGDEESITLGYNRRINRPRGWFINPFPSRSSRTNIFQGNPNLNPAFSSTFDLGYLKRWEKLTLTTSVYYQHETDSFERVQENTGQQTTDGIDIIRTIPINLSTNKRTGAELGLMYNPEKWLRLNSSVNFYQFETEGEFNGVDYGAKNTSWFARFSSKVSLPLEIDWQTSAFYRGAVQDAQSDTDGIFSLDLAFSKEILNKNATLSFNVRDLLNSRKRKSTTTTDFFERYSEFQWRQRQINVSLTYRFNQKKKPQRSGGFDGGDDEFEG
>NZ_CP019352.1|WP_076733302.1|1940135_1941113_-|mechanosensitive-ion-channel-family-protein
MFLLFNLLPIYQDNNPTEVIINSIDTYYNKLLISLPRIALAIFIIVAGILISKLITNFYKRRFLKQAEDPLMARFLAQTIKITLIAIAIIIALQVAGLNGIATGLLTAVGGGAIVLGFAFQDIGKNFLAGIILAFSRPFNVNDTIMIDSHFGKVRALNFRYTHIKTSDGRDIYIPNSDVLTKPVENYTADGFYRNEFVVGIGYEDDIAKVKAIIINILKNHDGVVQDEEHESFVIENELGPSTINLKVFFWVHTVDYRVSSRVLRGEVIKKVIEALIEAKFILPGNITEIKLYGGQEDLPLKLKKDPKDRILDLEERNLAEKKKS
>NZ_CP019352.1|WP_076733303.1|1941185_1941998_-|alpha/beta-hydrolase
MKKSLLILIFSIFFLGCKKTPENIDSIPEHDSIVIASKMVNEDRVINVWTPKSYKEGNESFPVLYMPDGGIKEDFNHIANTLAKLINNKKISPIILVGIENTERGRDLTGVSSVMDDAQYCPLTDGAKNFRLFITNELIPEINTKYRTTNRKGIIGESLAGLFVMETFFLTPETFNFYIAMDPSLWWNNHYLEQNTSSLLKEFPEQEIKLWFAGSNTEDISTHTRSIYKIFKDNAPENLIYKYSDEPNEKHNTIFRATKEKALIWSLNNN
>NZ_CP019352.1|WP_076733304.1|1942120_1943086_+|lipid-A-deacylase-LpxR-family-protein
MNKHLITLLFLFLTIALANAQKIDNMVSFRDINNNSYFRINYENDYFAATDENYTQGYNFEMFLDRLEKNPINHLFFTPENSLTKYGLSIEHIGFTPNDYASEDIQFGDRPFASAIMLKSMQITVNTENKTRFTSSFNLGLIGPGAFGKEMQVGIHKWTGNKIPKGWKNQIKNDVVINYELGFEKQILKYNNLLSLQLITNVKAGTLFTNASAGFNTTFGIIDAPFAAKENRKRNFKLYAYFQPMASVIAYDATLQGGLFNTKSPYTISNNNIKRLTAQYHYGIVLKTKTLYFEYSRAAITREFSTGSAAKYGGIKIGFTF
>NZ_CP019352.1|WP_076733305.1|1943234_1944272_-|sensor-histidine-kinase
MSINHFSVSNFNDKNIASNLTDECQKCYEKTDYEGRVIDCPLYSTKRRNGKIINKNGTTFLCCASTKTTKLFKGKLDALSYAYYDLNLPIEAIETNLKLKEQKRVNRLVHNLTTINAKNIQEIYDLVPQEILTSDFNAQIPRISEIVKNNPKETALMFLRLAKHNIHMKSEFSIYRKLDRANPTLEKRKHPIHKVLMNVLHSFFIDFSDKEVYVNVGECRSSINCDYESLQVALYHLIENASKYVRPKSTVEITFNEVNEDIFVHFKMSSLFIEESEYSKLFIEGFSGNEAKKTSKDGEGIGMWRIKQMLELNGFSIDVKPGKDIENLNGFRFADNEFIIRLKKY
>NZ_CP019352.1|WP_076733306.1|1944262_1944850_-|response-regulator
MIEFLKNNYEWLFGGIGVTALFFIIDKFVQKKNSDSKKDNKNVNKNSITIHNNLTSQSSDEKQKNGNGNNESKNNTRILFVDDEHTKFKMVSILKKAGWKNTKSTKDITDLDDYKAKEADIIFVDINGVGKTLFEDQGLGLASALKKKYPEKKIVIYSSETKGDRFHRALREVDDCLSKDAEPYQFVNLIETLCQ
>NZ_CP019352.1|WP_076733307.1|1945066_1946464_+|class-II-fumarate-hydratase
MEYRIEKDTMGEVKVPANKLWGAQTERSRNNFKIGTPASMPLEVVYGFAYLKKAAAFTNAELGVLNNEKRDLIAQVCDEILDGKHDDQFPLVIWQTGSGTQSNMNVNEVVANRAHQIAGKVIGEGEKTIQPNDDVNKSQSSNDTFPTGMHIAAYKKIVENTIPGVIKLRNTLNDKAQEFKDVVKIGRTHLMDATPLTLGQEFSGYVSQLDHGLKALENTLPHLSELALGGTAVGTGLNTPKGYDVLVAKYIAKFTNLPFETADNKFEALAAHDAIVESHGALKQLAVSLNKIANDIRMMASGPRSGIGEIIIPANEPGSSIMPGKVNPTQCEALTMVCAQVMGNDVAITVGGTQGHYELNVFKPMMAANILQSAQLIGDACVSFEEHCAAGIQPNHDVIKELLNNSLMLVTALNTKIGYYKAAEIANTAHKNGTTLKTEAVNLGYVTAEEYDEWVKPENMVGGLK

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP019352_2	2.4|1619890|34|NZ_CP019352|CRISPRCasFinder	1619890-1619923	34	NZ_CP021031	Rhizobium sp. NXC14 plasmid pRspNXC14a, complete sequence	60403-60436	10	0.706
NZ_CP019352_2	2.4|1619890|34|NZ_CP019352|CRISPRCasFinder	1619890-1619923	34	NZ_CP006989	Rhizobium sp. IE4771 plasmid pRetIE4771c, complete sequence	358181-358214	10	0.706
NZ_CP019352_2	2.4|1619890|34|NZ_CP019352|CRISPRCasFinder	1619890-1619923	34	NZ_CP013526	Rhizobium phaseoli strain R744 plasmid pRphaR744d, complete sequence	992417-992450	10	0.706
NZ_CP019352_2	2.4|1619890|34|NZ_CP019352|CRISPRCasFinder	1619890-1619923	34	NZ_CP020911	Rhizobium etli strain NXC12 plasmid pRetNXC12e, complete sequence	796224-796257	10	0.706
NZ_CP019352_2	2.4|1619890|34|NZ_CP019352|CRISPRCasFinder	1619890-1619923	34	NZ_CP020952	Rhizobium sp. CIAT894 plasmid pRheCIAT894e, complete sequence	207715-207748	10	0.706
NZ_CP019352_2	2.4|1619890|34|NZ_CP019352|CRISPRCasFinder	1619890-1619923	34	NZ_CP013579	Rhizobium phaseoli strain N671 plasmid pRphaN671e, complete sequence	847997-848030	10	0.706
NZ_CP019352_2	2.4|1619890|34|NZ_CP019352|CRISPRCasFinder	1619890-1619923	34	NZ_CP013531	Rhizobium phaseoli strain R723 plasmid pRphaR723d, complete sequence	824472-824505	10	0.706
NZ_CP019352_2	2.4|1619890|34|NZ_CP019352|CRISPRCasFinder	1619890-1619923	34	NC_021911	Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1f, complete sequence	294461-294494	10	0.706
NZ_CP019352_2	2.4|1619890|34|NZ_CP019352|CRISPRCasFinder	1619890-1619923	34	NZ_CP013536	Rhizobium phaseoli strain R650 plasmid pRphaR650d, complete sequence	859325-859358	10	0.706
NZ_CP019352_2	2.4|1619890|34|NZ_CP019352|CRISPRCasFinder	1619890-1619923	34	NZ_CP013541	Rhizobium phaseoli strain R630 plasmid pRphaR630d, complete sequence	890989-891022	10	0.706
NZ_CP019352_2	2.4|1619890|34|NZ_CP019352|CRISPRCasFinder	1619890-1619923	34	NZ_CP013546	Rhizobium phaseoli strain R620 plasmid pRphaR620d, complete sequence	853623-853656	10	0.706
NZ_CP019352_2	2.4|1619890|34|NZ_CP019352|CRISPRCasFinder	1619890-1619923	34	NZ_CP013584	Rhizobium phaseoli strain N261 plasmid pRphaN261d, complete sequence	824471-824504	10	0.706
NZ_CP019352_2	2.4|1619890|34|NZ_CP019352|CRISPRCasFinder	1619890-1619923	34	NZ_CP013573	Rhizobium phaseoli strain N771 plasmid pRphaN771e, complete sequence	847997-848030	10	0.706
NZ_CP019352_2	2.4|1619890|34|NZ_CP019352|CRISPRCasFinder	1619890-1619923	34	NZ_CP021126	Rhizobium sp. Kim5 plasmid pRetKim5b, complete sequence	364711-364744	10	0.706
NZ_CP019352_2	2.4|1619890|34|NZ_CP019352|CRISPRCasFinder	1619890-1619923	34	NZ_CP023072	Sinorhizobium fredii CCBAU 83666 plasmid pSF83666a, complete sequence	635455-635488	10	0.706
NZ_CP019352_2	2.4|1619890|34|NZ_CP019352|CRISPRCasFinder	1619890-1619923	34	CP007642	Rhizobium etli bv. phaseoli str. IE4803 plasmid pRetIE4803a, complete sequence	333848-333881	10	0.706
NZ_CP019352_2	2.4|1619890|34|NZ_CP019352|CRISPRCasFinder	1619890-1619923	34	NZ_CP023065	Sinorhizobium sp. CCBAU 05631 plasmid pSS05631a, complete sequence	80182-80215	10	0.706
NZ_CP019352_2	2.5|1619947|40|NZ_CP019352|CRISPRCasFinder	1619947-1619986	40	NZ_AP019836	Leptotrichia wadei strain JMUB3934 plasmid pJMUB3934p1, complete sequence	16854-16893	10	0.75
NZ_CP019352_3	3.1|1932769|31|NZ_CP019352|PILER-CR	1932769-1932799	31	NZ_MG205641	Paeniclostridium sordellii strain 7508-A plasmid pCS1-7, complete sequence	91428-91458	10	0.677
NZ_CP019352_3	3.1|1932769|31|NZ_CP019352|PILER-CR	1932769-1932799	31	NZ_MG205641	Paeniclostridium sordellii strain 7508-A plasmid pCS1-7, complete sequence	100223-100253	10	0.677
NZ_CP019352_3	3.1|1932769|31|NZ_CP019352|PILER-CR	1932769-1932799	31	NZ_MG205641	Paeniclostridium sordellii strain 7508-A plasmid pCS1-7, complete sequence	100706-100736	10	0.677
NZ_CP019352_3	3.1|1932769|31|NZ_CP019352|PILER-CR	1932769-1932799	31	NZ_MG205642	Paeniclostridium sordellii strain 7543-A plasmid pCS1-6, complete sequence	91428-91458	10	0.677
NZ_CP019352_3	3.1|1932769|31|NZ_CP019352|PILER-CR	1932769-1932799	31	NZ_MG205642	Paeniclostridium sordellii strain 7543-A plasmid pCS1-6, complete sequence	100223-100253	10	0.677
NZ_CP019352_3	3.1|1932769|31|NZ_CP019352|PILER-CR	1932769-1932799	31	NZ_MG205642	Paeniclostridium sordellii strain 7543-A plasmid pCS1-6, complete sequence	100706-100736	10	0.677
NZ_CP019352_2	2.4|1619890|34|NZ_CP019352|CRISPRCasFinder	1619890-1619923	34	NC_016794	Bacillus cereus F837/76 plasmid pF837_55, complete sequence	45475-45508	11	0.676
NZ_CP019352_2	2.4|1619890|34|NZ_CP019352|CRISPRCasFinder	1619890-1619923	34	NZ_CP015881	Ensifer adhaerens strain Casida A plasmid pCasidaAA, complete sequence	726546-726579	11	0.676

1. spacer 2.4|1619890|34|NZ_CP019352|CRISPRCasFinder matches to NZ_CP021031 (Rhizobium sp. NXC14 plasmid pRspNXC14a, complete sequence) position: , mismatch: 10, identity: 0.706

gccttcaatttcatcggcatcaacatctaaaaca	CRISPR spacer
ggcgtcaatctcatcggcatcaacagcttctggc	Protospacer
* * *****.*************** **   .  

2. spacer 2.4|1619890|34|NZ_CP019352|CRISPRCasFinder matches to NZ_CP006989 (Rhizobium sp. IE4771 plasmid pRetIE4771c, complete sequence) position: , mismatch: 10, identity: 0.706

gccttcaatttcatcggcatcaacatctaaaaca	CRISPR spacer
ggcgtcaatctcatcggcatcaacagcttctggc	Protospacer
* * *****.*************** **   .  

3. spacer 2.4|1619890|34|NZ_CP019352|CRISPRCasFinder matches to NZ_CP013526 (Rhizobium phaseoli strain R744 plasmid pRphaR744d, complete sequence) position: , mismatch: 10, identity: 0.706

gccttcaatttcatcggcatcaacatctaaaaca	CRISPR spacer
ggcgtcaatctcatcggcatcaacagcttctggc	Protospacer
* * *****.*************** **   .  

4. spacer 2.4|1619890|34|NZ_CP019352|CRISPRCasFinder matches to NZ_CP020911 (Rhizobium etli strain NXC12 plasmid pRetNXC12e, complete sequence) position: , mismatch: 10, identity: 0.706

gccttcaatttcatcggcatcaacatctaaaaca	CRISPR spacer
ggcgtcaatctcatcggcatcaacagcttctggc	Protospacer
* * *****.*************** **   .  

5. spacer 2.4|1619890|34|NZ_CP019352|CRISPRCasFinder matches to NZ_CP020952 (Rhizobium sp. CIAT894 plasmid pRheCIAT894e, complete sequence) position: , mismatch: 10, identity: 0.706

gccttcaatttcatcggcatcaacatctaaaaca	CRISPR spacer
ggcgtcaatctcatcggcatcaacagcttctggc	Protospacer
* * *****.*************** **   .  

6. spacer 2.4|1619890|34|NZ_CP019352|CRISPRCasFinder matches to NZ_CP013579 (Rhizobium phaseoli strain N671 plasmid pRphaN671e, complete sequence) position: , mismatch: 10, identity: 0.706

gccttcaatttcatcggcatcaacatctaaaaca	CRISPR spacer
ggcgtcaatctcatcggcatcaacagcttctggc	Protospacer
* * *****.*************** **   .  

7. spacer 2.4|1619890|34|NZ_CP019352|CRISPRCasFinder matches to NZ_CP013531 (Rhizobium phaseoli strain R723 plasmid pRphaR723d, complete sequence) position: , mismatch: 10, identity: 0.706

gccttcaatttcatcggcatcaacatctaaaaca	CRISPR spacer
ggcgtcaatctcatcggcatcaacagcttctggc	Protospacer
* * *****.*************** **   .  

8. spacer 2.4|1619890|34|NZ_CP019352|CRISPRCasFinder matches to NC_021911 (Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1f, complete sequence) position: , mismatch: 10, identity: 0.706

gccttcaatttcatcggcatcaacatctaaaaca	CRISPR spacer
ggcgtcaatctcatcggcatcaacagcttctggc	Protospacer
* * *****.*************** **   .  

9. spacer 2.4|1619890|34|NZ_CP019352|CRISPRCasFinder matches to NZ_CP013536 (Rhizobium phaseoli strain R650 plasmid pRphaR650d, complete sequence) position: , mismatch: 10, identity: 0.706

gccttcaatttcatcggcatcaacatctaaaaca	CRISPR spacer
ggcgtcaatctcatcggcatcaacagcttctggc	Protospacer
* * *****.*************** **   .  

10. spacer 2.4|1619890|34|NZ_CP019352|CRISPRCasFinder matches to NZ_CP013541 (Rhizobium phaseoli strain R630 plasmid pRphaR630d, complete sequence) position: , mismatch: 10, identity: 0.706

gccttcaatttcatcggcatcaacatctaaaaca	CRISPR spacer
ggcgtcaatctcatcggcatcaacagcttctggc	Protospacer
* * *****.*************** **   .  

11. spacer 2.4|1619890|34|NZ_CP019352|CRISPRCasFinder matches to NZ_CP013546 (Rhizobium phaseoli strain R620 plasmid pRphaR620d, complete sequence) position: , mismatch: 10, identity: 0.706

gccttcaatttcatcggcatcaacatctaaaaca	CRISPR spacer
ggcgtcaatctcatcggcatcaacagcttctggc	Protospacer
* * *****.*************** **   .  

12. spacer 2.4|1619890|34|NZ_CP019352|CRISPRCasFinder matches to NZ_CP013584 (Rhizobium phaseoli strain N261 plasmid pRphaN261d, complete sequence) position: , mismatch: 10, identity: 0.706

gccttcaatttcatcggcatcaacatctaaaaca	CRISPR spacer
ggcgtcaatctcatcggcatcaacagcttctggc	Protospacer
* * *****.*************** **   .  

13. spacer 2.4|1619890|34|NZ_CP019352|CRISPRCasFinder matches to NZ_CP013573 (Rhizobium phaseoli strain N771 plasmid pRphaN771e, complete sequence) position: , mismatch: 10, identity: 0.706

gccttcaatttcatcggcatcaacatctaaaaca	CRISPR spacer
ggcgtcaatctcatcggcatcaacagcttctggc	Protospacer
* * *****.*************** **   .  

14. spacer 2.4|1619890|34|NZ_CP019352|CRISPRCasFinder matches to NZ_CP021126 (Rhizobium sp. Kim5 plasmid pRetKim5b, complete sequence) position: , mismatch: 10, identity: 0.706

gccttcaatttcatcggcatcaacatctaaaaca	CRISPR spacer
ggcgtcaatctcatcggcatcaacagcttctggc	Protospacer
* * *****.*************** **   .  

15. spacer 2.4|1619890|34|NZ_CP019352|CRISPRCasFinder matches to NZ_CP023072 (Sinorhizobium fredii CCBAU 83666 plasmid pSF83666a, complete sequence) position: , mismatch: 10, identity: 0.706

gccttcaatttcatcggcatcaacatctaaaaca	CRISPR spacer
ggcgtcaatctcatcggcatcaacagcttctggc	Protospacer
* * *****.*************** **   .  

16. spacer 2.4|1619890|34|NZ_CP019352|CRISPRCasFinder matches to CP007642 (Rhizobium etli bv. phaseoli str. IE4803 plasmid pRetIE4803a, complete sequence) position: , mismatch: 10, identity: 0.706

gccttcaatttcatcggcatcaacatctaaaaca	CRISPR spacer
ggcgtcaatctcatcggcatcaacagcttctggc	Protospacer
* * *****.*************** **   .  

17. spacer 2.4|1619890|34|NZ_CP019352|CRISPRCasFinder matches to NZ_CP023065 (Sinorhizobium sp. CCBAU 05631 plasmid pSS05631a, complete sequence) position: , mismatch: 10, identity: 0.706

gccttcaatttcatcggcatcaacatctaaaaca	CRISPR spacer
ggcgtcaatctcatcggcatcaacagcttctggc	Protospacer
* * *****.*************** **   .  

18. spacer 2.5|1619947|40|NZ_CP019352|CRISPRCasFinder matches to NZ_AP019836 (Leptotrichia wadei strain JMUB3934 plasmid pJMUB3934p1, complete sequence) position: , mismatch: 10, identity: 0.75

tgttgtaaaattatttgctacaattttatttttagaagaa	CRISPR spacer
tgttgtaaaattatttgcaacaattatacctgatgaaact	Protospacer
****************** ****** **..*   ***.  

19. spacer 3.1|1932769|31|NZ_CP019352|PILER-CR matches to NZ_MG205641 (Paeniclostridium sordellii strain 7508-A plasmid pCS1-7, complete sequence) position: , mismatch: 10, identity: 0.677

gaggtgttaccataacagttcttttaacctc	CRISPR spacer
tcatatttacaattacagttcttttaaccgt	Protospacer
  .   **** ** *************** .

20. spacer 3.1|1932769|31|NZ_CP019352|PILER-CR matches to NZ_MG205641 (Paeniclostridium sordellii strain 7508-A plasmid pCS1-7, complete sequence) position: , mismatch: 10, identity: 0.677

gaggtgttaccataacagttcttttaacctc	CRISPR spacer
tcatatttacaattacagttcttttaaccgt	Protospacer
  .   **** ** *************** .

21. spacer 3.1|1932769|31|NZ_CP019352|PILER-CR matches to NZ_MG205641 (Paeniclostridium sordellii strain 7508-A plasmid pCS1-7, complete sequence) position: , mismatch: 10, identity: 0.677

gaggtgttaccataacagttcttttaacctc	CRISPR spacer
tcatatttacaattacagttcttttaaccgt	Protospacer
  .   **** ** *************** .

22. spacer 3.1|1932769|31|NZ_CP019352|PILER-CR matches to NZ_MG205642 (Paeniclostridium sordellii strain 7543-A plasmid pCS1-6, complete sequence) position: , mismatch: 10, identity: 0.677

gaggtgttaccataacagttcttttaacctc	CRISPR spacer
tcatatttacaattacagttcttttaaccgt	Protospacer
  .   **** ** *************** .

23. spacer 3.1|1932769|31|NZ_CP019352|PILER-CR matches to NZ_MG205642 (Paeniclostridium sordellii strain 7543-A plasmid pCS1-6, complete sequence) position: , mismatch: 10, identity: 0.677

gaggtgttaccataacagttcttttaacctc	CRISPR spacer
tcatatttacaattacagttcttttaaccgt	Protospacer
  .   **** ** *************** .

24. spacer 3.1|1932769|31|NZ_CP019352|PILER-CR matches to NZ_MG205642 (Paeniclostridium sordellii strain 7543-A plasmid pCS1-6, complete sequence) position: , mismatch: 10, identity: 0.677

gaggtgttaccataacagttcttttaacctc	CRISPR spacer
tcatatttacaattacagttcttttaaccgt	Protospacer
  .   **** ** *************** .

25. spacer 2.4|1619890|34|NZ_CP019352|CRISPRCasFinder matches to NC_016794 (Bacillus cereus F837/76 plasmid pF837_55, complete sequence) position: , mismatch: 11, identity: 0.676

gccttcaatttcatcggcatcaacatctaaaaca	CRISPR spacer
cgcttcaatttcatcggcttcaatattatgagag	Protospacer
  **************** ****.**.  .*. .

26. spacer 2.4|1619890|34|NZ_CP019352|CRISPRCasFinder matches to NZ_CP015881 (Ensifer adhaerens strain Casida A plasmid pCasidaAA, complete sequence) position: , mismatch: 11, identity: 0.676

gccttcaatttcatcggcatcaacatctaaaaca	CRISPR spacer
accttcaatatcaacggcatcaacaggcggctcg	Protospacer
.******** *** ***********  ...  *.

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site
DBSCAN-SWA_1	179354 : 185236	6	Escherichia_phage(50.0%)	NA	NA

Sequences of DBSCAN-SWA_1

Nucleotide sequences of DBSCAN-SWA_1

>NZ_CP019352|179354:185236|DBSCAN-SWA
ATTATAAGTTAGATATGAAGTTTACTATTTTACTACAAGCAGTACCATCTCCATAAGGATTGTGTAACTTACTCATTTTTAAGTAGGCGTCTTCGTTATTTAATAAGTTGTTTGTTTCTTTTACTATTTTTTCTTTGTTTGTTCCTACTAAAAAAACAGTTCCTGCATCTACAGCTTCTGGTCTTTCGGTAGTATCTCTCATTACTAAAACAGGCTTTCCTAAACTTGGTGCTTCTTCTTGCACACCACCACTATCTGTAATAATTAAATATGATTTATTCATTAACCATACAAATGCTGGATATGATAACGGATCTATTAACTTCACATTATCAATATCTGCTAATAATTCATATACTGGTTTTTGTACATTTGGATTTAAATGTACAGGATATATAACTTGAACATCGCTATTTTGCTCTGCAATTTCTTTTAATGCACTACAAATATTAATGAAACCTTGACCATGGTTTTCTCTTCTATGTCCTGTTACTAAAATTAATTTTTTAGAGTTATCTACTATTGAAATTAATTGTTCAACTTCTTTATCTGAATATTGAGAAGATGTTACTTTACCCGAACTAAAATCTAATGCATCAATTACTGTGTTTCCAGTAACAAGAATGCTGTTTTCTGAAATGTTTTCGTTTAATAAATTTTGCTTAGATGTTGTTGTTGGTGCAAAATGATAATCTGAAACACTACCAGCAATACTTCTATTAACTTCTTCGGGAAAAGGAGAACGCTTATTAAAAGTTCTTAATCCTGCTTCTACGTGGCATACTTTTGCTCCTGAATAAAATGCAGCTATACTTGCAGCCATGGTGGTAGTAGTATCTCCATGTACATAAACATAATCTGGCTTAAATTCTTCTAGTATTGGCTTTAAATTTGTAATAATATCTGCTGTTAGAGAATATAAATTTTGATTTGGTTTCATTAAATCTAAATCATAGTCTGGTGTTACTTCAAAAAATGTTAATACTTGGTCTAACATTTCTCTGTGCTGAGCAGTAATACAAACACGAGTATCAAATTCCTCACTATTTTTTAAAAACTCCTTTACTAAAGGTGCCATTTTAATAGCTTCGGGTCTTGTTCCAAAAATAATTAAATTCTTTTTCATTAAAGTTTTCCTTTTAAAGTTGCAAAAGTACTGTTTTTATAAATATTTTAACAATTAAACTAAAACTAATAAATTAGCTCTAAATTTGTATAAAACACTTAAAGTCTTGCAGTTACTAAATTATCCGGTAGAAATCCTTTTAGATCGAACACCACAGTATCTGTACTTATAATATTTTTCCAATTTAAAATGTTAAATTTATCGTGCTTAACAGCTAATACTATGGCTTTATAATTTTTTGTTATTTCTGGAATTAAATTGATTTCGTATTCTTGTTTTACTTCTTCTTTATCTGCAAAAGAATCGTAAACATCTACGTTTAAACCAAACTCATTTAACTCTTTAATTACATTTATTACACCTGTATTTCTAATATCTGGGCAGTTTTCTTTAAATGTTATACCCATTACAAGTACATCTGCTCCTTTTATTTCGCTTCCTTTAAGTGCTAATAATTTAATTAATTTATTGGCTACAAACATTCCCATGTTTGAGTTTATTCTTCTTCCAGATAGTATAACCTCTGGATGATAGCCAACAGATTCTGCTTTGTGTGTTAAATAATAAGGGTCTACGCCTATGCAGTGTCCACCAACTAATCCTGGTGTAAATGGCAAGAAATTCCATTTTGTTCCTGCTGCTGCTAGAACTTGAGTAGTATCTATATCTAACTTATCGAAAATAATAGCCAATTCGTTAATAAATGCAATGTTTAAATCGCGTTGCGTATTTTCAATTACTTTTGCTGCTTCGGCTACTTTAATAGAGCTTGTTTTGTGAGTTCCAGCAGTAATAATAGATTTATATAAATTATCTACAATAGTTGCAACTTCTGGAGTACTACCTGAAGTTACTTTTATAATTTTACTTATTGTATGCGTTTTATCTCCAGGATTTATACGCTCTGGAGAGTAGCCACAAAAAAAATCTTTATTAAATACTAATTTACTTTCTGACTCTAATATTGGAGCACAAACTTCTTCTGTACAACCAGGGTATACAGTAGATTCATAAATTACTATATCTCCTTTTTTTAAAACTTTAGCAATTGTTTTACTTGCTTTAATTATTGGTGTTAAATCTGGAGATTTATGTTTTGTAATTGGTGTTGGTACTGTTACAATATAAATATTTGCGGTTTTTAAGTCTTCTAATGAACTAGAAAAATTAAGTGTTTTAGTAGATTGTAATACTTTAGTTGAAATTTCTAATGTATTATCTTTATTTGCCTTTAATTCTTTTATTCTAATTTCATTAATATCAAAACCAATGACATTAAATTTATTTTTAGCAAACTCGACTGCTAATGGTAAACCTACATACCCTAATCCTATAATTGCAATTTTATGAGCCATAATAATAGATGTTATATTAAAATATAGCTTTTAAACAAGTATCTAAACTATCTTCCCATTCTGGGATTTCAATATTAAAATTTTCTACTAATTTAGTTTTATCTAAAACACTATACTTTGGTCTTTTAGCTGCCGTTGGATATGATGATGTAGGAATGGCGTTTAAAGTAATTTTAGTATTTGTTTTATTAAAAATTGCTTTAGCAAAATCGTACCAACTAGCAACACCTTTATTGCTATAATGATATAAACCGTAATTTTTATCTTGTTTAATAATTTCTAATATAACTTTTGCTAAGTCTATAGCGTAAGTTGGAGTACCAATTTGATCGCTTACCACACCAAGTGTATCTCTAGTTTTAGATAAGTTAAGCATACTTTTAACAAAATTATTTGCAAATTGAGAATACAACCAAGAGGTTCTAATTATAAAATATTTAGTTAATATGCTTTCTATAGCTTTTTCGCCATCTCGCTTTGTTTGCCCATAAACCGAAATTGGGTTAGTGCTATCTTGTTCAGAATACATTTGGGTTTTATTTCCATTAAACACAAAATCTGTAGAGATATGAATTAATGTAATATTGTTTTCTTTACAAGATTCTGCAATATTTTTTACAGCTATATTATTTATTAAATTAGCTTGATCTCTTTCTTCCTCAGCTTTATCTACTGCTGTATACGCAGCACAGTTAATACAAAAATTATAAGTAGAATTAAAGTTGTTTTTTATACTTTTTTCTGAGGTTATATCTAATTCTTTACTATTTAAAAAGGTAAATTCAATGTTAGCTTTTGAAGCCAATAACTGTAAACATTGACCAAGCTGACCATTTGCACCAGTAACTAAAACTTTAGTTTTCATTTTTATCTTTCTTTATATAAGTAAACCTATTGTTTATTACTGCAAAATATTATTTAACTCTTAGCTTATAGATATACTTAATTCTTATTCAATAACAGCATTTTTAAACGCTGGAAGTATACTATCTTTATCTGAAACTAAAAGCTCCTCTTGAGGCAATTGCCAATCTATATTTAAATCTTTATCATTAAAAATAATACCAGCTTCTGAAGCTTTATTATAGTAATTATCGCATTTATATGAAAAAATTGCAGTATCACTAAGTACAACAAAACCGTGAGCAAAACCTCTAGGTACCAACAATTGCTTTTTATTATCTTCTGAAAGTTCTACTGAAACATATTCTCCAAAAGTTTTTGAGTTTTTTCTTAAATCTACTGCTACATCTAAAACTTTACCTTTTATAACTCGAACTAGTTTAGATTGTGCATGCTCTCCTGTTTGATAATGCAAGCCTCTTAAAACGCCTTTAGTAGAAAAAGACTCGTTATCTTGTATAAACGTATTTTTAAAGTGAGTTAACTCTTGAAACTGTTTGGTATTAAAACTTTCAAAAAAATAACCTCTTTTATCTTCGAAAACTCTAGGTTCTATAATGTAACAGTCTTTTAATTTTGTTTCTAAAACTTTCATTATACTAATATTAATGTTCTAAAATGCTTAAAAGGTGTTTACCGTAACCACTTTTAACTAATGGTTCTATAAGTTTTTTTAATTGTGCTTTATCTATATAACCCATTCTATATGCAACTTCTTCTATAGCACCAATTTTTAAACCTTGCCTTTCCTCTATAACTTGAACAAATTGAGAGGCTTGCATTAAAGATTTAAAAGTACCTGTGTCTAACCAAGCGGTTCCTTTGTCTAAGACACTTACTTTTAGTTTTCCTTGCCTTAAATACTCTTTATTTACGTCTGTAATTTCTAATTCTCCTCTATGGCTTGGTTTTATATTTTTAGCAATATTAACCACTTCATTATCGTAAAAATAGATACCTGGTACTGCGTAATTAGATTTTGGTTTTTTTGGTTTTTCTTCTATTGAAATAACATTACCATTATCATCAAACTCTGCAACACCATAACGTTCTGGATCATGTACATGATAAGCGTAAATAATACCGCCTTCTGGATTATTATTATCCTGTAAAAGCTTTTCTAGACCAGTACCATAGAAAATATTGTCACCAAGAATTAGTGCTACTTTATCGTTACCTATAAAATCGGCTCCAATTATAAATGCTTCTGCTAAACCATTTGGAGCTTCTTGTACTGCATATTCAAAATTGCATCCAAACTTTTTTCCATCTCCAAGTAAAGCTTCAAATAATGGTAAATCGTGAGGTGTAGAAATAATAAGAATATCCTTAATTCCAGACCACATTAATGTAGATAAGGGATAATAAATCATTGGCTTATCGTAAATAGGCATTAACTGCTTACTTACTGCTAAAGTTAATGGATGTAAACGTGTTCCTGAACCTCCTGCCAATATTATACCTTTCATATTATGAGCTATATTTATTTAAGTACCAACTTATTGTTTTTTTAATACCTGTTTCAAAATTTTCGTCGGCTTCCCAACCTAATTCATTTTCTATTTTAGAGGCATCTATAGCGTATCTAAAATCGTGACCAGGCCTATCTGTTACAAAAGTAATTTGCTTTTTATAAGATGTTTCAGCTGGTTTAATTTCATCTAAAATCTTGCAAATTGTATTAACTATATATAAGTTATCTCTTTCGTTTCTTCCTCCAATATTATATGTTTCTCCAGCTTCTCCATTTTTAAAAACTAACTCTATACCTTTACAATGGTCTAGTACAAATAACCAGTCTCTAATGTTTTTACCGTCGCCATAAATTGGTATATTTTCTCCAGTAATGGCTTTTCTTATAATTGTAGGAATTAACTTTTCATCATGTTGTTTTGGCCCATAATTATTAGAACAATTGGTTGTAACAACGTTCATGCCATAAGTATGGAAATAACTACGAACTATAAAATCTGAAGATGCTTTTGATGCACTATATGGACTATTTGGAGCATATGGTGTTTGCTCTGTAAACAAACCTGTCTCTCCTAGAGTTCCATAAACCTCATCTGTAGAAATGTGATGAAATCTAGCATTTTCGAAACCCTTTTTTACTTGATTAGGCCCATTCATCCAATGTTGTTTTGCAACATCTAATAAGTTAAATGTTCCAGTAATATTAGTATCTATAAATGCTCCTGGATTTTTAATAGAGTTATCTACATGAGACTCTGCAGCAAAATGAATTACTCCAGAAAACTTATGCGTATCGAACAAATCTTCAATTAGTTTTCTATTACAAATATCTCCTTTAACAAAAGTATAATTAGGATTGTTTTCAATCTCTTTTATATTTGTTATATCTCCAGCGTAAGTTAATTTATCTAAATTTACTAAGTGGGTTTCTGGGTTGTTTTCTAAAAAATATGGTATAAAGTTAGATCCTATAAAACCAGCTCCTCCCGTAATTAAAATAGTTTTATCCTTCATAGTTTTTAGCAT

Protein sequences of DBSCAN-SWA_1

>NZ_CP019352|179354:185236|184207_185236_-|WP_083678168.1|DBSCAN-SWA
MLKTMKDKTILITGGAGFIGSNFIPYFLENNPETHLVNLDKLTYAGDITNIKEIENNPNYTFVKGDICNRKLIEDLFDTHKFSGVIHFAAESHVDNSIKNPGAFIDTNITGTFNLLDVAKQHWMNGPNQVKKGFENARFHHISTDEVYGTLGETGLFTEQTPYAPNSPYSASKASSDFIVRSYFHTYGMNVVTTNCSNNYGPKQHDEKLIPTIIRKAITGENIPIYGDGKNIRDWLFVLDHCKGIELVFKNGEAGETYNIGGRNERDNLYIVNTICKILDEIKPAETSYKKQITFVTDRPGHDFRYAIDASKIENELGWEADENFETGIKKTISWYLNKYSS
>NZ_CP019352|179354:185236|182783_183332_-|WP_076731554.1|DBSCAN-SWA
MKVLETKLKDCYIIEPRVFEDKRGYFFESFNTKQFQELTHFKNTFIQDNESFSTKGVLRGLHYQTGEHAQSKLVRVIKGKVLDVAVDLRKNSKTFGEYVSVELSEDNKKQLLVPRGFAHGFVVLSDTAIFSYKCDNYYNKASEAGIIFNDKDLNIDWQLPQEELLVSDKDSILPAFKNAVIE
>NZ_CP019352|179354:185236|180577_181834_-|WP_076731552.1|DBSCAN-SWA
MAHKIAIIGLGYVGLPLAVEFAKNKFNVIGFDINEIRIKELKANKDNTLEISTKVLQSTKTLNFSSSLEDLKTANIYIVTVPTPITKHKSPDLTPIIKASKTIAKVLKKGDIVIYESTVYPGCTEEVCAPILESESKLVFNKDFFCGYSPERINPGDKTHTISKIIKVTSGSTPEVATIVDNLYKSIITAGTHKTSSIKVAEAAKVIENTQRDLNIAFINELAIIFDKLDIDTTQVLAAAGTKWNFLPFTPGLVGGHCIGVDPYYLTHKAESVGYHPEVILSGRRINSNMGMFVANKLIKLLALKGSEIKGADVLVMGITFKENCPDIRNTGVINVIKELNEFGLNVDVYDSFADKEEVKQEYEINLIPEITKNYKAIVLAVKHDKFNILNWKNIISTDTVVFDLKGFLPDNLVTARL
>NZ_CP019352|179354:185236|183342_184206_-|WP_076731555.1|DBSCAN-SWA
MKGIILAGGSGTRLHPLTLAVSKQLMPIYDKPMIYYPLSTLMWSGIKDILIISTPHDLPLFEALLGDGKKFGCNFEYAVQEAPNGLAEAFIIGADFIGNDKVALILGDNIFYGTGLEKLLQDNNNPEGGIIYAYHVHDPERYGVAEFDDNGNVISIEEKPKKPKSNYAVPGIYFYDNEVVNIAKNIKPSHRGELEITDVNKEYLRQGKLKVSVLDKGTAWLDTGTFKSLMQASQFVQVIEERQGLKIGAIEEVAYRMGYIDKAQLKKLIEPLVKSGYGKHLLSILEH
>NZ_CP019352|179354:185236|179354_180479_-|WP_076731551.1|DBSCAN-SWA
MKKNLIIFGTRPEAIKMAPLVKEFLKNSEEFDTRVCITAQHREMLDQVLTFFEVTPDYDLDLMKPNQNLYSLTADIITNLKPILEEFKPDYVYVHGDTTTTMAASIAAFYSGAKVCHVEAGLRTFNKRSPFPEEVNRSIAGSVSDYHFAPTTTSKQNLLNENISENSILVTGNTVIDALDFSSGKVTSSQYSDKEVEQLISIVDNSKKLILVTGHRRENHGQGFINICSALKEIAEQNSDVQVIYPVHLNPNVQKPVYELLADIDNVKLIDPLSYPAFVWLMNKSYLIITDSGGVQEEAPSLGKPVLVMRDTTERPEAVDAGTVFLVGTNKEKIVKETNNLLNNEDAYLKMSKLHNPYGDGTACSKIVNFISNL
>NZ_CP019352|179354:185236|181850_182699_-|WP_076731553.1|DBSCAN-SWA
MKTKVLVTGANGQLGQCLQLLASKANIEFTFLNSKELDITSEKSIKNNFNSTYNFCINCAAYTAVDKAEEERDQANLINNIAVKNIAESCKENNITLIHISTDFVFNGNKTQMYSEQDSTNPISVYGQTKRDGEKAIESILTKYFIIRTSWLYSQFANNFVKSMLNLSKTRDTLGVVSDQIGTPTYAIDLAKVILEIIKQDKNYGLYHYSNKGVASWYDFAKAIFNKTNTKITLNAIPTSSYPTAAKRPKYSVLDKTKLVENFNIEIPEWEDSLDTCLKAIF

Homologous phage analysis in the prophage region

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_076731551.1|179354_180479_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	A0A1V0SAG5	Catovirus	9.0e-32	30.5
WP_076731552.1|180577_181834_-	nucleotide sugar dehydrogenase	A0A218MKK1	uncultured_virus	7.5e-11	25.9
WP_076731553.1|181850_182699_-	dTDP-4-dehydrorhamnose reductase	A0A1D7XFA3	Escherichia_phage	2.4e-37	39.0
WP_076731554.1|182783_183332_-	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A1D8EQH2	Escherichia_phage	2.7e-34	43.4
WP_076731555.1|183342_184206_-	glucose-1-phosphate thymidylyltransferase RfbA	H9NC64	Sphingomonas_phage	5.7e-95	59.4
WP_083678168.1|184207_185236_-	dTDP-glucose 4,6-dehydratase	A0A1D7XFE8	Escherichia_phage	1.4e-84	48.5