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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP018768 Staphylococcus aureus subsp. aureus strain UCI 28 isolate ST5 chromosome, complete genome 10 crisprs cas3,DEDDh,DinG,csa3,RT,WYL 8 3 8 5
NZ_CP018769 Staphylococcus aureus subsp. aureus strain UCI 28 isolate ST5 plasmid pUCI28, complete sequence 0 crisprs csa3 0 0 0 0

Results visualization

1. NZ_CP018768
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP018768_1 439140-439241 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP018768_2 794451-794533 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP018768_3 835398-835476 Unclear NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP018768_4 840853-841122 Unclear NA
4 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP018768_5 884137-884218 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP018768_6 1706970-1707117 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP018768_7 2104625-2104706 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP018768_8 2235399-2235479 Orphan NA
1 spacers
csa3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP018768_9 2247720-2247805 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP018768_10 2355758-2355838 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP018768_4 4.1|840889|22|NZ_CP018768|CRT 840889-840910 22 NZ_CP018768.1 201039-201060 0 1.0
NZ_CP018768_4 4.1|840889|22|NZ_CP018768|CRT 840889-840910 22 NZ_CP018768.1 324115-324136 0 1.0
NZ_CP018768_4 4.1|840889|22|NZ_CP018768|CRT 840889-840910 22 NZ_CP018768.1 667323-667344 0 1.0
NZ_CP018768_4 4.1|840889|22|NZ_CP018768|CRT 840889-840910 22 NZ_CP018768.1 793492-793513 0 1.0
NZ_CP018768_4 4.1|840889|22|NZ_CP018768|CRT 840889-840910 22 NZ_CP018768.1 884210-884231 0 1.0
NZ_CP018768_4 4.1|840889|22|NZ_CP018768|CRT 840889-840910 22 NZ_CP018768.1 1402889-1402910 0 1.0
NZ_CP018768_4 4.1|840889|22|NZ_CP018768|CRT 840889-840910 22 NZ_CP018768.1 1491441-1491462 0 1.0
NZ_CP018768_4 4.1|840889|22|NZ_CP018768|CRT 840889-840910 22 NZ_CP018768.1 1672615-1672636 0 1.0
NZ_CP018768_4 4.1|840889|22|NZ_CP018768|CRT 840889-840910 22 NZ_CP018768.1 1687149-1687170 0 1.0
NZ_CP018768_4 4.1|840889|22|NZ_CP018768|CRT 840889-840910 22 NZ_CP018768.1 2004307-2004328 0 1.0
NZ_CP018768_4 4.3|841006|22|NZ_CP018768|CRT 841006-841027 22 NZ_CP018768.1 201039-201060 0 1.0
NZ_CP018768_4 4.3|841006|22|NZ_CP018768|CRT 841006-841027 22 NZ_CP018768.1 324115-324136 0 1.0
NZ_CP018768_4 4.3|841006|22|NZ_CP018768|CRT 841006-841027 22 NZ_CP018768.1 667323-667344 0 1.0
NZ_CP018768_4 4.3|841006|22|NZ_CP018768|CRT 841006-841027 22 NZ_CP018768.1 793492-793513 0 1.0
NZ_CP018768_4 4.3|841006|22|NZ_CP018768|CRT 841006-841027 22 NZ_CP018768.1 884210-884231 0 1.0
NZ_CP018768_4 4.3|841006|22|NZ_CP018768|CRT 841006-841027 22 NZ_CP018768.1 1402889-1402910 0 1.0
NZ_CP018768_4 4.3|841006|22|NZ_CP018768|CRT 841006-841027 22 NZ_CP018768.1 1491441-1491462 0 1.0
NZ_CP018768_4 4.3|841006|22|NZ_CP018768|CRT 841006-841027 22 NZ_CP018768.1 1672615-1672636 0 1.0
NZ_CP018768_4 4.3|841006|22|NZ_CP018768|CRT 841006-841027 22 NZ_CP018768.1 1687149-1687170 0 1.0
NZ_CP018768_4 4.3|841006|22|NZ_CP018768|CRT 841006-841027 22 NZ_CP018768.1 2004307-2004328 0 1.0
NZ_CP018768_7 7.1|2104649|34|NZ_CP018768|CRISPRCasFinder 2104649-2104682 34 NZ_CP018768.1 835397-835430 0 1.0
NZ_CP018768_7 7.1|2104649|34|NZ_CP018768|CRISPRCasFinder 2104649-2104682 34 NZ_CP018768.1 1191243-1191276 0 1.0
NZ_CP018768_4 4.1|840889|22|NZ_CP018768|CRT 840889-840910 22 NZ_CP018768.1 954442-954463 1 0.955
NZ_CP018768_4 4.1|840889|22|NZ_CP018768|CRT 840889-840910 22 NZ_CP018768.1 1706877-1706898 1 0.955
NZ_CP018768_4 4.1|840889|22|NZ_CP018768|CRT 840889-840910 22 NZ_CP018768.1 1707110-1707131 1 0.955
NZ_CP018768_4 4.2|840947|23|NZ_CP018768|CRT 840947-840969 23 NZ_CP018768.1 794442-794464 1 0.957
NZ_CP018768_4 4.2|840947|23|NZ_CP018768|CRT 840947-840969 23 NZ_CP018768.1 794720-794742 1 0.957
NZ_CP018768_4 4.2|840947|23|NZ_CP018768|CRT 840947-840969 23 NZ_CP018768.1 1403005-1403027 1 0.957
NZ_CP018768_4 4.2|840947|23|NZ_CP018768|CRT 840947-840969 23 NZ_CP018768.1 2004365-2004387 1 0.957
NZ_CP018768_4 4.2|840947|23|NZ_CP018768|CRT 840947-840969 23 NZ_CP018768.1 2344929-2344951 1 0.957
NZ_CP018768_4 4.3|841006|22|NZ_CP018768|CRT 841006-841027 22 NZ_CP018768.1 954442-954463 1 0.955
NZ_CP018768_4 4.3|841006|22|NZ_CP018768|CRT 841006-841027 22 NZ_CP018768.1 1706877-1706898 1 0.955
NZ_CP018768_4 4.3|841006|22|NZ_CP018768|CRT 841006-841027 22 NZ_CP018768.1 1707110-1707131 1 0.955
NZ_CP018768_4 4.4|841064|23|NZ_CP018768|CRT 841064-841086 23 NZ_CP018768.1 794442-794464 1 0.957
NZ_CP018768_4 4.4|841064|23|NZ_CP018768|CRT 841064-841086 23 NZ_CP018768.1 794720-794742 1 0.957
NZ_CP018768_4 4.4|841064|23|NZ_CP018768|CRT 841064-841086 23 NZ_CP018768.1 1403005-1403027 1 0.957
NZ_CP018768_4 4.4|841064|23|NZ_CP018768|CRT 841064-841086 23 NZ_CP018768.1 2004365-2004387 1 0.957
NZ_CP018768_4 4.4|841064|23|NZ_CP018768|CRT 841064-841086 23 NZ_CP018768.1 2344929-2344951 1 0.957
NZ_CP018768_5 5.1|884161|34|NZ_CP018768|CRISPRCasFinder 884161-884194 34 NZ_CP018768.1 1402985-1403018 1 0.971
NZ_CP018768_7 7.1|2104649|34|NZ_CP018768|CRISPRCasFinder 2104649-2104682 34 NZ_CP018768.1 1799242-1799275 1 0.971
NZ_CP018768_10 10.1|2355783|31|NZ_CP018768|CRISPRCasFinder 2355783-2355813 31 NZ_CP018768.1 848141-848171 1 0.968
NZ_CP018768_10 10.1|2355783|31|NZ_CP018768|CRISPRCasFinder 2355783-2355813 31 NZ_CP018768.1 848197-848227 1 0.968
NZ_CP018768_4 4.2|840947|23|NZ_CP018768|CRT 840947-840969 23 NZ_CP018768.1 1491324-1491346 2 0.913
NZ_CP018768_4 4.2|840947|23|NZ_CP018768|CRT 840947-840969 23 NZ_CP018768.1 2104706-2104728 2 0.913
NZ_CP018768_4 4.4|841064|23|NZ_CP018768|CRT 841064-841086 23 NZ_CP018768.1 1491324-1491346 2 0.913
NZ_CP018768_4 4.4|841064|23|NZ_CP018768|CRT 841064-841086 23 NZ_CP018768.1 2104706-2104728 2 0.913
NZ_CP018768_6 6.2|1707077|22|NZ_CP018768|PILER-CR 1707077-1707098 22 NZ_CP018768.1 1191365-1191386 2 0.909
NZ_CP018768_6 6.2|1707077|22|NZ_CP018768|PILER-CR 1707077-1707098 22 NZ_CP018768.1 2104594-2104615 2 0.909
NZ_CP018768_6 6.2|1707077|22|NZ_CP018768|PILER-CR 1707077-1707098 22 NZ_CP018768.1 2104711-2104732 2 0.909
NZ_CP018768_7 7.1|2104649|34|NZ_CP018768|CRISPRCasFinder 2104649-2104682 34 NZ_CP018768.1 1407359-1407392 2 0.941
NZ_CP018768_7 7.1|2104649|34|NZ_CP018768|CRISPRCasFinder 2104649-2104682 34 NZ_CP018768.1 2794166-2794199 2 0.941
NZ_CP018768_10 10.1|2355783|31|NZ_CP018768|CRISPRCasFinder 2355783-2355813 31 NZ_CP018768.1 102397-102427 2 0.935
NZ_CP018768_10 10.1|2355783|31|NZ_CP018768|CRISPRCasFinder 2355783-2355813 31 NZ_CP018768.1 400401-400431 2 0.935
NZ_CP018768_10 10.1|2355783|31|NZ_CP018768|CRISPRCasFinder 2355783-2355813 31 NZ_CP018768.1 667378-667408 2 0.935
NZ_CP018768_10 10.1|2355783|31|NZ_CP018768|CRISPRCasFinder 2355783-2355813 31 NZ_CP018768.1 848253-848283 2 0.935
NZ_CP018768_10 10.1|2355783|31|NZ_CP018768|CRISPRCasFinder 2355783-2355813 31 NZ_CP018768.1 884473-884503 2 0.935
NZ_CP018768_10 10.1|2355783|31|NZ_CP018768|CRISPRCasFinder 2355783-2355813 31 NZ_CP018768.1 1050443-1050473 2 0.935
NZ_CP018768_10 10.1|2355783|31|NZ_CP018768|CRISPRCasFinder 2355783-2355813 31 NZ_CP018768.1 1196844-1196874 2 0.935
NZ_CP018768_10 10.1|2355783|31|NZ_CP018768|CRISPRCasFinder 2355783-2355813 31 NZ_CP018768.1 1402944-1402974 2 0.935
NZ_CP018768_10 10.1|2355783|31|NZ_CP018768|CRISPRCasFinder 2355783-2355813 31 NZ_CP018768.1 1491377-1491407 2 0.935
NZ_CP018768_10 10.1|2355783|31|NZ_CP018768|CRISPRCasFinder 2355783-2355813 31 NZ_CP018768.1 1491493-1491523 2 0.935
NZ_CP018768_10 10.1|2355783|31|NZ_CP018768|CRISPRCasFinder 2355783-2355813 31 NZ_CP018768.1 1687203-1687233 2 0.935
NZ_CP018768_10 10.1|2355783|31|NZ_CP018768|CRISPRCasFinder 2355783-2355813 31 NZ_CP018768.1 2002959-2002989 2 0.935
NZ_CP018768_10 10.1|2355783|31|NZ_CP018768|CRISPRCasFinder 2355783-2355813 31 NZ_CP018768.1 2344982-2345012 2 0.935
NZ_CP018768_10 10.1|2355783|31|NZ_CP018768|CRISPRCasFinder 2355783-2355813 31 NZ_CP018768.1 2520567-2520597 2 0.935

1. spacer 4.1|840889|22|NZ_CP018768|CRT matches to position: 201039-201060, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

2. spacer 4.1|840889|22|NZ_CP018768|CRT matches to position: 324115-324136, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

3. spacer 4.1|840889|22|NZ_CP018768|CRT matches to position: 667323-667344, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

4. spacer 4.1|840889|22|NZ_CP018768|CRT matches to position: 793492-793513, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

5. spacer 4.1|840889|22|NZ_CP018768|CRT matches to position: 884210-884231, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

6. spacer 4.1|840889|22|NZ_CP018768|CRT matches to position: 1402889-1402910, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

7. spacer 4.1|840889|22|NZ_CP018768|CRT matches to position: 1491441-1491462, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

8. spacer 4.1|840889|22|NZ_CP018768|CRT matches to position: 1672615-1672636, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

9. spacer 4.1|840889|22|NZ_CP018768|CRT matches to position: 1687149-1687170, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

10. spacer 4.1|840889|22|NZ_CP018768|CRT matches to position: 2004307-2004328, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

11. spacer 4.3|841006|22|NZ_CP018768|CRT matches to position: 201039-201060, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

12. spacer 4.3|841006|22|NZ_CP018768|CRT matches to position: 324115-324136, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

13. spacer 4.3|841006|22|NZ_CP018768|CRT matches to position: 667323-667344, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

14. spacer 4.3|841006|22|NZ_CP018768|CRT matches to position: 793492-793513, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

15. spacer 4.3|841006|22|NZ_CP018768|CRT matches to position: 884210-884231, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

16. spacer 4.3|841006|22|NZ_CP018768|CRT matches to position: 1402889-1402910, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

17. spacer 4.3|841006|22|NZ_CP018768|CRT matches to position: 1491441-1491462, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

18. spacer 4.3|841006|22|NZ_CP018768|CRT matches to position: 1672615-1672636, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

19. spacer 4.3|841006|22|NZ_CP018768|CRT matches to position: 1687149-1687170, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

20. spacer 4.3|841006|22|NZ_CP018768|CRT matches to position: 2004307-2004328, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

21. spacer 7.1|2104649|34|NZ_CP018768|CRISPRCasFinder matches to position: 835397-835430, mismatch: 0, identity: 1.0

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtagaatttcttttcgaaattctctgtgttgg	Protospacer
**********************************

22. spacer 7.1|2104649|34|NZ_CP018768|CRISPRCasFinder matches to position: 1191243-1191276, mismatch: 0, identity: 1.0

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtagaatttcttttcgaaattctctgtgttgg	Protospacer
**********************************

23. spacer 4.1|840889|22|NZ_CP018768|CRT matches to position: 954442-954463, mismatch: 1, identity: 0.955

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttagaaa	Protospacer
***************** ****

24. spacer 4.1|840889|22|NZ_CP018768|CRT matches to position: 1706877-1706898, mismatch: 1, identity: 0.955

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttctttacgaaa	Protospacer
**************** *****

25. spacer 4.1|840889|22|NZ_CP018768|CRT matches to position: 1707110-1707131, mismatch: 1, identity: 0.955

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttctttacgaaa	Protospacer
**************** *****

26. spacer 4.2|840947|23|NZ_CP018768|CRT matches to position: 794442-794464, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

27. spacer 4.2|840947|23|NZ_CP018768|CRT matches to position: 794720-794742, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

28. spacer 4.2|840947|23|NZ_CP018768|CRT matches to position: 1403005-1403027, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

29. spacer 4.2|840947|23|NZ_CP018768|CRT matches to position: 2004365-2004387, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

30. spacer 4.2|840947|23|NZ_CP018768|CRT matches to position: 2344929-2344951, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

31. spacer 4.3|841006|22|NZ_CP018768|CRT matches to position: 954442-954463, mismatch: 1, identity: 0.955

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttagaaa	Protospacer
***************** ****

32. spacer 4.3|841006|22|NZ_CP018768|CRT matches to position: 1706877-1706898, mismatch: 1, identity: 0.955

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttctttacgaaa	Protospacer
**************** *****

33. spacer 4.3|841006|22|NZ_CP018768|CRT matches to position: 1707110-1707131, mismatch: 1, identity: 0.955

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttctttacgaaa	Protospacer
**************** *****

34. spacer 4.4|841064|23|NZ_CP018768|CRT matches to position: 794442-794464, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

35. spacer 4.4|841064|23|NZ_CP018768|CRT matches to position: 794720-794742, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

36. spacer 4.4|841064|23|NZ_CP018768|CRT matches to position: 1403005-1403027, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

37. spacer 4.4|841064|23|NZ_CP018768|CRT matches to position: 2004365-2004387, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

38. spacer 4.4|841064|23|NZ_CP018768|CRT matches to position: 2344929-2344951, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

39. spacer 5.1|884161|34|NZ_CP018768|CRISPRCasFinder matches to position: 1402985-1403018, mismatch: 1, identity: 0.971

attgagaatccaatttctctttgttggggcccat	CRISPR spacer
attgggaatccaatttctctttgttggggcccat	Protospacer
****.*****************************

40. spacer 7.1|2104649|34|NZ_CP018768|CRISPRCasFinder matches to position: 1799242-1799275, mismatch: 1, identity: 0.971

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtagaatttcttttcgaaattctttgtgttgg	Protospacer
*************************.********

41. spacer 10.1|2355783|31|NZ_CP018768|CRISPRCasFinder matches to position: 848141-848171, mismatch: 1, identity: 0.968

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgtcagct	Protospacer
***********************.*******

42. spacer 10.1|2355783|31|NZ_CP018768|CRISPRCasFinder matches to position: 848197-848227, mismatch: 1, identity: 0.968

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgtcagct	Protospacer
***********************.*******

43. spacer 4.2|840947|23|NZ_CP018768|CRT matches to position: 1491324-1491346, mismatch: 2, identity: 0.913

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatacaat	Protospacer
**************.*** ****

44. spacer 4.2|840947|23|NZ_CP018768|CRT matches to position: 2104706-2104728, mismatch: 2, identity: 0.913

tctgtagaaattggaaatccaat	CRISPR spacer
tctgttgaaattgggaatccaat	Protospacer
***** ********.********

45. spacer 4.4|841064|23|NZ_CP018768|CRT matches to position: 1491324-1491346, mismatch: 2, identity: 0.913

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatacaat	Protospacer
**************.*** ****

46. spacer 4.4|841064|23|NZ_CP018768|CRT matches to position: 2104706-2104728, mismatch: 2, identity: 0.913

tctgtagaaattggaaatccaat	CRISPR spacer
tctgttgaaattgggaatccaat	Protospacer
***** ********.********

47. spacer 6.2|1707077|22|NZ_CP018768|PILER-CR matches to position: 1191365-1191386, mismatch: 2, identity: 0.909

tgaaattggggttccaatttct	CRISPR spacer
tgaaattggtgatccaatttct	Protospacer
********* * **********

48. spacer 6.2|1707077|22|NZ_CP018768|PILER-CR matches to position: 2104594-2104615, mismatch: 2, identity: 0.909

tgaaattggggttccaatttct	CRISPR spacer
tgaaattgggaatccaatttct	Protospacer
**********. **********

49. spacer 6.2|1707077|22|NZ_CP018768|PILER-CR matches to position: 2104711-2104732, mismatch: 2, identity: 0.909

tgaaattggggttccaatttct	CRISPR spacer
tgaaattgggaatccaatttct	Protospacer
**********. **********

50. spacer 7.1|2104649|34|NZ_CP018768|CRISPRCasFinder matches to position: 1407359-1407392, mismatch: 2, identity: 0.941

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtggaatttcttatcgaaattctctgtgttgg	Protospacer
****.********* *******************

51. spacer 7.1|2104649|34|NZ_CP018768|CRISPRCasFinder matches to position: 2794166-2794199, mismatch: 2, identity: 0.941

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtagaatttcttttcgaaattctttttgttgg	Protospacer
*************************.* ******

52. spacer 10.1|2355783|31|NZ_CP018768|CRISPRCasFinder matches to position: 102397-102427, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

53. spacer 10.1|2355783|31|NZ_CP018768|CRISPRCasFinder matches to position: 400401-400431, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

54. spacer 10.1|2355783|31|NZ_CP018768|CRISPRCasFinder matches to position: 667378-667408, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

55. spacer 10.1|2355783|31|NZ_CP018768|CRISPRCasFinder matches to position: 848253-848283, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

56. spacer 10.1|2355783|31|NZ_CP018768|CRISPRCasFinder matches to position: 884473-884503, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

57. spacer 10.1|2355783|31|NZ_CP018768|CRISPRCasFinder matches to position: 1050443-1050473, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

58. spacer 10.1|2355783|31|NZ_CP018768|CRISPRCasFinder matches to position: 1196844-1196874, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

59. spacer 10.1|2355783|31|NZ_CP018768|CRISPRCasFinder matches to position: 1402944-1402974, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

60. spacer 10.1|2355783|31|NZ_CP018768|CRISPRCasFinder matches to position: 1491377-1491407, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

61. spacer 10.1|2355783|31|NZ_CP018768|CRISPRCasFinder matches to position: 1491493-1491523, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

62. spacer 10.1|2355783|31|NZ_CP018768|CRISPRCasFinder matches to position: 1687203-1687233, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

63. spacer 10.1|2355783|31|NZ_CP018768|CRISPRCasFinder matches to position: 2002959-2002989, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

64. spacer 10.1|2355783|31|NZ_CP018768|CRISPRCasFinder matches to position: 2344982-2345012, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

65. spacer 10.1|2355783|31|NZ_CP018768|CRISPRCasFinder matches to position: 2520567-2520597, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP018768_4 4.2|840947|23|NZ_CP018768|CRT 840947-840969 23 AP014226 Uncultured Mediterranean phage uvMED isolate uvMED-GF-C9-MedDCM-OCT-S44-C3, *** SEQUENCING IN PROGRESS *** 28490-28512 3 0.87
NZ_CP018768_4 4.2|840947|23|NZ_CP018768|CRT 840947-840969 23 AP014225 Uncultured Mediterranean phage uvMED isolate uvMED-GF-C9-MedDCM-OCT-S41-C89, *** SEQUENCING IN PROGRESS *** 24653-24675 3 0.87
NZ_CP018768_4 4.4|841064|23|NZ_CP018768|CRT 841064-841086 23 AP014226 Uncultured Mediterranean phage uvMED isolate uvMED-GF-C9-MedDCM-OCT-S44-C3, *** SEQUENCING IN PROGRESS *** 28490-28512 3 0.87
NZ_CP018768_4 4.4|841064|23|NZ_CP018768|CRT 841064-841086 23 AP014225 Uncultured Mediterranean phage uvMED isolate uvMED-GF-C9-MedDCM-OCT-S41-C89, *** SEQUENCING IN PROGRESS *** 24653-24675 3 0.87
NZ_CP018768_9 9.1|2247746|34|NZ_CP018768|CRISPRCasFinder 2247746-2247779 34 JN882286 Cronobacter phage vB_CsaP_GAP52, complete genome 23034-23067 8 0.765
NZ_CP018768_9 9.1|2247746|34|NZ_CP018768|CRISPRCasFinder 2247746-2247779 34 CP030544 Staphylococcus aureus strain ER04166.3 plasmid unnamed2, complete sequence 7567-7600 8 0.765

1. spacer 4.2|840947|23|NZ_CP018768|CRT matches to AP014226 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C9-MedDCM-OCT-S44-C3, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 3, identity: 0.87

tctgtagaaattggaaatccaat	CRISPR spacer
actgtagaaaatggaaatccaac	Protospacer
 ********* ***********.

2. spacer 4.2|840947|23|NZ_CP018768|CRT matches to AP014225 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C9-MedDCM-OCT-S41-C89, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 3, identity: 0.87

tctgtagaaattggaaatccaat	CRISPR spacer
actgtagaaaatggaaatccaac	Protospacer
 ********* ***********.

3. spacer 4.4|841064|23|NZ_CP018768|CRT matches to AP014226 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C9-MedDCM-OCT-S44-C3, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 3, identity: 0.87

tctgtagaaattggaaatccaat	CRISPR spacer
actgtagaaaatggaaatccaac	Protospacer
 ********* ***********.

4. spacer 4.4|841064|23|NZ_CP018768|CRT matches to AP014225 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C9-MedDCM-OCT-S41-C89, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 3, identity: 0.87

tctgtagaaattggaaatccaat	CRISPR spacer
actgtagaaaatggaaatccaac	Protospacer
 ********* ***********.

5. spacer 9.1|2247746|34|NZ_CP018768|CRISPRCasFinder matches to JN882286 (Cronobacter phage vB_CsaP_GAP52, complete genome) position: , mismatch: 8, identity: 0.765

ttgcatatctttagctttattgtttgcaactggg	CRISPR spacer
ttgcatatctttagctttatagcttttatatgct	Protospacer
******************** *.** .*  **  

6. spacer 9.1|2247746|34|NZ_CP018768|CRISPRCasFinder matches to CP030544 (Staphylococcus aureus strain ER04166.3 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.765

ttgcatatctttagctttattgtttgcaactggg	CRISPR spacer
ttgaataactttagctttattgttataaacagta	Protospacer
*** *** ****************   *** * .

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 772570 : 780391 10 Hokovirus(16.67%) NA NA
DBSCAN-SWA_2 792362 : 807003 14 uncultured_Caudovirales_phage(50.0%) NA NA
DBSCAN-SWA_3 979898 : 1031915 52 Streptococcus_phage(33.33%) protease,tRNA,bacteriocin NA
DBSCAN-SWA_4 1051953 : 1060426 9 Synechococcus_phage(33.33%) NA NA
DBSCAN-SWA_5 1112165 : 1194562 107 Staphylococcus_phage(79.17%) capsid,portal,tail,terminase,tRNA,plate,holin,head,transposase NA
DBSCAN-SWA_6 1722209 : 1731252 7 uncultured_Mediterranean_phage(50.0%) tRNA NA
DBSCAN-SWA_7 1861248 : 1918951 53 Staphylococcus_phage(95.24%) protease,tRNA NA
DBSCAN-SWA_8 2015745 : 2109589 114 Staphylococcus_phage(84.62%) capsid,portal,tail,terminase,tRNA,holin,head,protease,integrase attL 2013641:2013665|attR 2111875:2111899
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Click the colored protein region to show detailed information
Click the colored protein region to show detailed information
Click the colored protein region to show detailed information
Click the colored protein region to show detailed information
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
NZ_CP018768.1|WP_000435350.1|1118274_1118721_+|hypothetical-protein 1118274_1118721_+ 148 aa aa NA NA NA 1112165-1194562 yes
NZ_CP018768.1|WP_001153176.1|1118754_1118916_+|hypothetical-protein 1118754_1118916_+ 53 aa aa NA NA NA 1112165-1194562 yes
NZ_CP018768.1|WP_001280594.1|1118876_1119047_-|hypothetical-protein 1118876_1119047_- 56 aa aa NA NA NA 1112165-1194562 yes
NZ_CP018768.1|WP_000681968.1|2052963_2053140_-|hypothetical-protein 2052963_2053140_- 58 aa aa NA NA NA 2015745-2109589 yes
NZ_CP018768.1|WP_000990056.1|2053382_2053481_-|hypothetical-protein 2053382_2053481_- 32 aa aa NA NA NA 2015745-2109589 yes