CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP019406	Salmonella enterica subsp. enterica serovar Blegdam str. S-1824 chromosome, complete genome	2 crisprs	WYL,DinG,DEDDh,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	0	10	8	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP019406_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP019406_1

2970867-2971383

TypeI-E

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRISPRCasFinder
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	PILER-CR

8 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of NZ_CP019406_1

>merge|NZ_CP019406|1|2970867-2971383|CRISPRCasFinder,CRT,PILER-CR
GTGTTTATCCCCGCTGACGCGGGGAACACTATTTATAAGCGTGTCATCTATGCAACCCAACCGGTTTATCCCCGCTGGCGCGGGGAACACACCTGCCCGACCCAATAAGGGGGCCCTCGTGACGGTTTATCCCCGCTGGCGCGGGGAACACGGCCGCTGGTCAAATTCCCAATCTGAGCAATCCGGTTTATCCCCGCTGGCGCGGGGAACACGCCTCAAAATCTCTCGGTGAGATGTAAGCGTCCGGTTTATCCCCGCTGGCGCGGGGAACACACCAGTGGTCAGCGGCGGATGAATTTGCCCTGCGGTTTATCCCCGCTGGCGCGGGGAACACGAGAATGCTCATGCGCGTGAGCGCCATATATTCGGTTTATCCCCGCTGGCGCGGGGAACACCATGGCAATTTTACGGCGGACGTGCTCGCTCTCGGTTTATCCCCGCTGGCGCGGGGAACACAGGCGGACCGAAAAACCGTTTTCAGCCAACGTCGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP019406|1|1|2970867-2971383|CRISPRCasFinder
GTGTTTATCCCCGCTGACGCGGGGAACAC	TATTTATAAGCGTGTCATCTATGCAACCCAAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACCTGCCCGACCCAATAAGGGGGCCCTCGTGA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGCCGCTGGTCAAATTCCCAATCTGAGCAATC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCCTCAAAATCTCTCGGTGAGATGTAAGCGTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACCAGTGGTCAGCGGCGGATGAATTTGCCCTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GAGAATGCTCATGCGCGTGAGCGCCATATATT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CATGGCAATTTTACGGCGGACGTGCTCGCTCT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGGCGGACCGAAAAACCGTTTTCAGCCAACGT
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP019406|1|1|2970867-2971383|CRT
GTGTTTATCCCCGCTGACGCGGGGAACAC	TATTTATAAGCGTGTCATCTATGCAACCCAAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACCTGCCCGACCCAATAAGGGGGCCCTCGTGA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGCCGCTGGTCAAATTCCCAATCTGAGCAATC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCCTCAAAATCTCTCGGTGAGATGTAAGCGTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACCAGTGGTCAGCGGCGGATGAATTTGCCCTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GAGAATGCTCATGCGCGTGAGCGCCATATATT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CATGGCAATTTTACGGCGGACGTGCTCGCTCT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGGCGGACCGAAAAACCGTTTTCAGCCAACGT
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP019406|1|1|2970869-2971383|PILER-CR
GTTTATCCCCGCTGACGCGGGGAACACTA	TTTATAAGCGTGTCATCTATGCAACCCAACCG
GTTTATCCCCGCTGGCGCGGGGAACACAC	CTGCCCGACCCAATAAGGGGGCCCTCGTGACG
GTTTATCCCCGCTGGCGCGGGGAACACGG	CCGCTGGTCAAATTCCCAATCTGAGCAATCCG
GTTTATCCCCGCTGGCGCGGGGAACACGC	CTCAAAATCTCTCGGTGAGATGTAAGCGTCCG
GTTTATCCCCGCTGGCGCGGGGAACACAC	CAGTGGTCAGCGGCGGATGAATTTGCCCTGCG
GTTTATCCCCGCTGGCGCGGGGAACACGA	GAATGCTCATGCGCGTGAGCGCCATATATTCG
GTTTATCCCCGCTGGCGCGGGGAACACCA	TGGCAATTTTACGGCGGACGTGCTCGCTCTCG
GTTTATCCCCGCTGGCGCGGGGAACACAG	GCGGACCGAAAAACCGTTTTCAGCCAACGTCG
GTTTATCCCCGCTGGCGCGGGGAACAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019406.1\|WP_000372384.1\|2968646_2969555_-\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375
NZ_CP019406.1\|WP_000206417.1\|2974078_2975137_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|273843
NZ_CP019406.1\|WP_000085115.1\|2973321_2974068_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
NZ_CP019406.1\|WP_000134246.1\|2963475_2964525_-\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
NZ_CP019406.1\|WP_001118109.1\|2966231_2966588_-\|DUF3561-family-protein	unknown	unknown	gnl\|CDD\|371891
NZ_CP019406.1\|WP_000490481.1\|2969805_2970852_+\|aminopeptidase	unknown	unknown	gnl\|CDD\|182299
NZ_CP019406.1\|WP_000144830.1\|2971772_2972693_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NZ_CP019406.1\|WP_000368579.1\|2975701_2977258_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
NZ_CP019406.1\|WP_001092251.1\|2967197_2968637_-\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
NZ_CP019406.1\|WP_001219253.1\|2964521_2965001_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
NZ_CP019406.1\|WP_000517480.1\|2965729_2966041_-\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
NZ_CP019406.1\|WP_000117945.1\|2975150_2975705_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
NZ_CP019406.1\|WP_000039870.1\|2981418_2982153_-\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NZ_CP019406.1\|WP_001221538.1\|2962733_2963495_-\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
NZ_CP019406.1\|WP_000029737.1\|2977269_2979933_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP019406.1\|WP_000281483.1\|2972689_2973340_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|273869
NZ_CP019406.1\|WP_001518648.1\|2971479_2971773_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
NZ_CP019406.1\|WP_001173663.1\|2966605_2967211_-\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
NZ_CP019406.1\|WP_076734701.1\|2980377_2981331_+\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
NZ_CP019406.1\|WP_000741653.1\|2965000_2965711_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670

Protein	Function_ID	Function_description	E-value
NZ_CP019406.1\|WP_000372384.1\|2968646_2969555_-\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
NZ_CP019406.1\|WP_000206417.1\|2974078_2975137_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	4.28543e-133
NZ_CP019406.1\|WP_000085115.1\|2973321_2974068_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	5.23137e-48
NZ_CP019406.1\|WP_000134246.1\|2963475_2964525_-\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
NZ_CP019406.1\|WP_001118109.1\|2966231_2966588_-\|DUF3561-family-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	4.85353e-49
NZ_CP019406.1\|WP_000490481.1\|2969805_2970852_+\|aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
NZ_CP019406.1\|WP_000144830.1\|2971772_2972693_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	1.63116e-157
NZ_CP019406.1\|WP_000368579.1\|2975701_2977258_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
NZ_CP019406.1\|WP_001092251.1\|2967197_2968637_-\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
NZ_CP019406.1\|WP_001219253.1\|2964521_2965001_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	3.84083e-103
NZ_CP019406.1\|WP_000517480.1\|2965729_2966041_-\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	1.08865e-64
NZ_CP019406.1\|WP_000117945.1\|2975150_2975705_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	1.26497e-33
NZ_CP019406.1\|WP_000039870.1\|2981418_2982153_-\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	7.73232e-139
NZ_CP019406.1\|WP_001221538.1\|2962733_2963495_-\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.7078e-146
NZ_CP019406.1\|WP_000029737.1\|2977269_2979933_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	0
NZ_CP019406.1\|WP_000281483.1\|2972689_2973340_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	7.7595e-75
NZ_CP019406.1\|WP_001518648.1\|2971479_2971773_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	1.1867e-62
NZ_CP019406.1\|WP_001173663.1\|2966605_2967211_-\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	4.61291e-146
NZ_CP019406.1\|WP_076734701.1\|2980377_2981331_+\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
NZ_CP019406.1\|WP_000741653.1\|2965000_2965711_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	4.09575e-119

>NZ_CP019406.1|WP_000490481.1|2969805_2970852_+|aminopeptidase
MFSATRRFAVILALGVGFILPAQAASPGPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLDNLIVGDKLYFNSGKNTPEAVRTLTRDRALAIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS
>NZ_CP019406.1|WP_000372384.1|2968646_2969555_-|sulfate-adenylyltransferase-subunit-CysD
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF
>NZ_CP019406.1|WP_001092251.1|2967197_2968637_-|sulfate-adenylyltransferase-subunit-CysN
MNTILAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTLQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYCEETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSANMRWYSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNLDFRGYAGTLASGSVKVGERIKVLPSGVESSVARIVTFDGDKEEACAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMAEQPLAPGQSYDVKLAGKKTRARIEAIRYQIDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVRELDERGATPPVEYSAFELELNALVRRHFPHWDARDLLGDKHGAA
>NZ_CP019406.1|WP_001173663.1|2966605_2967211_-|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVAAREQLHGHRGVVLWFTGLSGSGKSTVAGALEEALHQRGVSTYLLDGDNVRHGLCRDLGFSDADRQENIRRVGEVASLMADAGLIVLTAFISPHRAERQLVKERVGHDRFIEIYVNTPLAICEQRDPKGLYKKARAGELRNFTGIDAIYEAPDSPQVHLNGEQLVTNLVSQLLDLLRRRDIIRS
>NZ_CP019406.1|WP_001118109.1|2966231_2966588_-|DUF3561-family-protein
MPGMVKVTGFNMRNSHNITFTRSDAFMVDDDATSAFPGAVVGFVSWLLALGIPFLLYGPNTLFFFLYTWPFFLALMPVSVIIGIALHLLVKGKILFSIMFTLLAVGALFGALFIWLLG
>NZ_CP019406.1|WP_000517480.1|2965729_2966041_-|cell-division-protein-FtsB
MGKLTLLLLALLVWLQYSLWFGKNGIHDYSRVNDDVVAQQATNAKLKARNDQLFAEIDDLNGGQEAIEERARNELSMTKPGETFYRLVPDASKRAATAGQTHR
>NZ_CP019406.1|WP_000741653.1|2965000_2965711_-|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MAATLLDVCAVVPAAGFGRRMQTECPKQYLSIGNKTILEHSVHALLAHPRVTRVVIAISPGDHRFAQLPLANHPQITVVDGGNERADSVLAGLQAVAKAQWVLVHDAARPCLHQDDLARLLTISENSRVGGILASPVRDTMKRGEPGKNAIAHTVERADLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPALVEGRADNIKVTRPEDLALAEFYLTRTIHQEKA
>NZ_CP019406.1|WP_001219253.1|2964521_2965001_-|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRISYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLMKAAK
>NZ_CP019406.1|WP_000134246.1|2963475_2964525_-|tRNA-pseudouridine(13)-synthase-TruD
MTEFDNLTWLHGKPQGSGLLKANPEDFVVVEDLGFTPDGEGEHILLRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDFSAFQLEGCKVLEYARHKRKLRLGALKGNAFTLVLREISDRRDVETRLQAIRDGGVPNYFGAQRFGIGGSNLQGALRWAQSNAPVRDRNKRSFWLSAARSALFNQIVHQRLKKPDFNQVVDGDALQLAGRGSWFVATSEELPELQRRVDEKELMITASLPGSGEWGTQRAALAFEQDAIAQETVLQSLLLREKVEASRRAMLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVVRELINTMGDYAHIAE
>NZ_CP019406.1|WP_001221538.1|2962733_2963495_-|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLNGYQHYDTAAAVTCALLRGLSREPLRTGRILNVNVPDLPLAQVKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVDEGYVSVTPLHVDLTAHSAHDVVSDWLDSVGVGTQW
>NZ_CP019406.1|WP_001518648.1|2971479_2971773_-|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMVVVVTENVPPRLRGRLAVWLLEVRAGVYVGDTSKRIREMIWQQITQLGGVGNVVMAWATNTESGFEFQTWGENRRIPVDLDGLRLVSFLPVENQ
>NZ_CP019406.1|WP_000144830.1|2971772_2972693_-|type-I-E-CRISPR-associated-endonuclease-Cas1
MTFVPLNPIPLKDRTSMIFLQYGQIDVLDGAFVLIDKTGIRTHIPVGSVACIMLEPGTRVSHAAVHLASTVGTLLVWVGEAGVRVYSSGQPGGARADKLLYQAKLALDDDLRLKVVRKMYELRFREPPPARRSVEQLRGIEGSRVRATYALLAKQYGVKWHGRNYDPKDWEKGDVVNRCISAATSCLYGISEAAILAAGYAPAIGFIHSGKPLSFVYDIADIIKFESVVPKAFEIAARHPAEPDKEVRLACRDIFRSSKLTGKLIPLIEEVLAAGEIEPPQPAPDMLPPAIPEPESLGDSGHRGHG
>NZ_CP019406.1|WP_000281483.1|2972689_2973340_-|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRITLHTSELSPAQLLHLVERGEYVMHQWLWDLFPGGKERQFLYRREELQGAFRFFVLSQEQPAASTIFDVQTRPFAPMLSAGQTLRFNLRANPTICKNGKRHDLLMEAKRQRKTQGDSQDIWSYQQQAALEWLARQGEQNGFTLREASVDAYRQQQIRREKSRQMIQFSSVDYTGVLVINEPALFLQRLAQGYGKSRAFGCGMMMIKPGDDA
>NZ_CP019406.1|WP_000085115.1|2973321_2974068_-|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSQYLVFQLHGPMASWGVDAPGEVRHSHELPSRSALLGLLAAALGIRRDEEERLNTFNRHYQFLLCASGNPRWARDYHTVQMPKEVRKARYFSRREELQDPELLSALISRRDYYTDAWWMIAVSATPDAPYTLAQLQAALQHPVFPLYLGRKSHPLALPLAPQLLEGNAADVLREAYRWYQDQFNALKLTLPGLQNECWWEGEHDGLTANKILRRRDMPLSRQQWLFGERSVNQGPWLRKEDACISQE
>NZ_CP019406.1|WP_000206417.1|2974078_2975137_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRISSQSLKRAWRTSELFEQALAGHIGIRTGRIAREAAQILVDSGIDAKKAVEYVKNIANCFGKVKEDKKPKDELTNAETEQLVHISPAEFEAVKALARRLAEEKRPATEEEAELLRHDRMAVDIAMFGRMLAKKTDFNVEAACQVAHAFGVSETIIEDDFFTAVDDLRQASAEDAGAGHLGETGFGSALFYTYICIDKDLLVKNLNGNEELANKTLRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTDQLNVAVKRITALHENMNEVYAQETAFKNFNVMNQQGSMKDVLDFICA
>NZ_CP019406.1|WP_000117945.1|2975150_2975705_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSVVTKDDKATLRQWHDELQEKRGLRASLRRSKTVNDACLAEGLHSLLMQTHSLWKNKAPWNVTALAITAALAAHIKFIDEQKSFAAQLGQKKGGDTPVMSKLRFSHLLAVKTPDELLRQLRRAVKLLDGSVNLFSLADDIFCWCQEQNDLLNHHRRQQRPTEFLRIRWALEYYQAGDTDNEQD
>NZ_CP019406.1|WP_000368579.1|2975701_2977258_-|type-I-E-CRISPR-associated-protein-Cse1/CasA
MDNFSLLTTPWLPVRFKDGSTGKLAPVDLADENVVDIAATRADLQGAAWQFLLGLLQCSIAPKRYKNWEDIWFDGLHADVLHKALAPLEHAFQFGAESPSFMQDFEPLSGEKVSIASLLPEIPGAQTTKFNKDHFVKRGVTERFCPHCAALALFSLQLNAPAGGKGYRTGLRGGGPLTTLVELQEYQGERQTPIWRKLWLNVMPQDTADLPLPDQCDATVFPWLAATRTSEQANAVTTPEQVNKLQAYWGMPRRIRLDFATLQSGCCDICGAESDELLGFMTVKNYGVNYDGWRHPLTPYRAPVKDQNAFFSVKPQPGGLIWRDWLGLSQNNQTEANYESPAQVVKVFNARSLTDVKAGIRGFGADFDNMKIRCWYEHHFPLLMTEGLIPDLRKAVQTAARLLSLLRSALKEAWFTNAKDARGDFSFIDIDFWNLTQGRFLNLIHDLENGHKPDERLNKWQRELWLFTRCYFDDHVFTNPYESSDLERIMKARKKYFTSSAEKQSAKAAKAKKQEAAE
>NZ_CP019406.1|WP_000029737.1|2977269_2979933_-|CRISPR-associated-helicase/endonuclease-Cas3
MSIYHYWGKSRRGETDGGDDYHLLCWHSLDVAAVGYWMVINNIYFIDHYLKKLGIQDKEQAAQFFAWILCWHDIGKFAHSFQQLYRHEALNIFNEPTRHYEKIAHTTLGYMLWNSWLSECPELFPPSSLSVRKSKRVMALWMPVTTGHHGRPPEAIQELDHFRQQDKDAARDFLLRIKALFPLITLPEAWDEDEGIDQFQQLSWFISAAVVLADWTGSASRYFPRTAEKMPVDTYWQQALAKAQTAITLFPSAANVSAFTGIETLFPFIQHPTPLQQKALELDINVDGAQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLYFGLPTMATANAMFERMANTWLALYQPDSRPSLILAHSARRLMDRFNQSIWSVTLSGTEEPDEAQPYSQGCAAWFADSNKKALLAEVGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAWMSRILEGLIERQASNGNATILLSATLSQQQRDKLVAAFSRGVRRSVQAPLLGHDDYPWLTQVTQTELISQRVDTRKEVERCVDIGWLHSEEACLERIGEAVEKGNCIAWIRNSVDDAIRIYRQLQLSKVVATENLLLFHSRFAFHDRQRIESQTLNLFGKQSGAQRAGKVIIATQVIEQSLDIDCDEMISDLAPVDLLIQRAGRLQRHIRDRNGLVKKSGQDERETPVLRILAPEWDDAPRENWLSSAMRNSAYVYPDHGRMWLTQRILREQGTIRMPQSARLLIESVYGEDVNMPVGFAKTEQLQEGKFYCDRAFAGQMLLNFAPGYCAEISDSLPEKMSTRLAEESVTLWLAKIVDSVVTPYASGEHAWEMSVLRVRQSWWNKHKDEFEKLDGEPLRKWCAQQHQDKDFATVIVVTDFAACGYSANEGLIGMMGE
>NZ_CP019406.1|WP_076734701.1|2980377_2981331_+|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSSDKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGAKMTWHPELLQESISTLRKEVTGNAQIKAAVYEMMRPAEAPDHPLVEWQDSLTEDEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHTYSPFAEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLT
>NZ_CP019406.1|WP_000039870.1|2981418_2982153_-|phosphoadenosine-phosphosulfate-reductase
MSKLDLNALNELPKVDRVLALAETNAQLETLTAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALKELKAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG

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Crispr_ID: NZ_CP019406_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP019406_2

2987536-2988052

TypeI-E

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRISPRCasFinder
GTTTATCCCCGCTGGCGCGGGGAACAC	CRT
GTTTATCCCCGCTGGCGCGGGGAACAC	PILER-CR

8 spacers

cas3,cas8e,cse2gr11,cas7

The CRISPR arrays of NZ_CP019406_2

>merge|NZ_CP019406|2|2987536-2988052|CRISPRCasFinder,CRT,PILER-CR
ACGGCTATCCTTGTTGGCGCGGGGAACACGGCTACACGCAAAAATTCCAGTCGTTGGCGCACGGTTTATCCCCGCTGGCGCGGGGAACACCCGATTAAGATCCGCAGTCTGCATCAGTAACTCGGTTTATCCCCGCTGGCGAGGGGAACACCGATTCTACGGCAACAGGCCAGGCTGCGACCGCGGTTTATCCCCGCTGGCGCGGGGAACACATGACATGACCGTGACTAGCGAGAATGTCCCACGGTTTATCCCCGCTGGCGCGGGGAACACGGTTCAGGATTCAGCCCCCACCGAAACCGGCGCGGTTTATCCCCGCTGGCGCGGGGAACACATCAAACATGGAAACCCCTTTAATGAGAGCAACGGTTTATCCCCGCTGGCGCGGGGAACACAATAATCGGCAATTTGTCCTGGACAGGCACGGCAGTTTATCCCCGCTGGCGCGGGGAACACGAATCTGGAGGCCAACAGCGCGGCGAAATCCTCAGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP019406|2|2|2987536-2988052|CRISPRCasFinder
ACGGCTATCCTTGTTGGCGCGGGGAACAC	GGCTACACGCAAAAATTCCAGTCGTTGGCGCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCGATTAAGATCCGCAGTCTGCATCAGTAACT
CGGTTTATCCCCGCTGGCGAGGGGAACAC	CGATTCTACGGCAACAGGCCAGGCTGCGACCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATGACATGACCGTGACTAGCGAGAATGTCCCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGTTCAGGATTCAGCCCCCACCGAAACCGGCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATCAAACATGGAAACCCCTTTAATGAGAGCAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AATAATCGGCAATTTGTCCTGGACAGGCACGG
CAGTTTATCCCCGCTGGCGCGGGGAACAC	GAATCTGGAGGCCAACAGCGCGGCGAAATCCT
CAGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP019406|2|2|2987538-2988052|CRT
GGCTATCCTTGTTGGCGCGGGGAACAC	GGCTACACGCAAAAATTCCAGTCGTTGGCGCACG
GTTTATCCCCGCTGGCGCGGGGAACAC	CCGATTAAGATCCGCAGTCTGCATCAGTAACTCG
GTTTATCCCCGCTGGCGAGGGGAACAC	CGATTCTACGGCAACAGGCCAGGCTGCGACCGCG
GTTTATCCCCGCTGGCGCGGGGAACAC	ATGACATGACCGTGACTAGCGAGAATGTCCCACG
GTTTATCCCCGCTGGCGCGGGGAACAC	GGTTCAGGATTCAGCCCCCACCGAAACCGGCGCG
GTTTATCCCCGCTGGCGCGGGGAACAC	ATCAAACATGGAAACCCCTTTAATGAGAGCAACG
GTTTATCCCCGCTGGCGCGGGGAACAC	AATAATCGGCAATTTGTCCTGGACAGGCACGGCA
GTTTATCCCCGCTGGCGCGGGGAACAC	GAATCTGGAGGCCAACAGCGCGGCGAAATCCTCA
GTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP019406|2|2|2987599-2988052|PILER-CR
GTTTATCCCCGCTGGCGCGGGGAACAC	CCGATTAAGATCCGCAGTCTGCATCAGTAACTCG
GTTTATCCCCGCTGGCGAGGGGAACAC	CGATTCTACGGCAACAGGCCAGGCTGCGACCGCG
GTTTATCCCCGCTGGCGCGGGGAACAC	ATGACATGACCGTGACTAGCGAGAATGTCCCACG
GTTTATCCCCGCTGGCGCGGGGAACAC	GGTTCAGGATTCAGCCCCCACCGAAACCGGCGCG
GTTTATCCCCGCTGGCGCGGGGAACAC	ATCAAACATGGAAACCCCTTTAATGAGAGCAACG
GTTTATCCCCGCTGGCGCGGGGAACAC	AATAATCGGCAATTTGTCCTGGACAGGCACGGCA
GTTTATCCCCGCTGGCGCGGGGAACAC	GAATCTGGAGGCCAACAGCGCGGCGAAATCCTCA
GTTTATCCCCGCTGGCGCGGGGAACAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019406.1\|WP_001044459.1\|2997188_2997962_+\|fimbria/pilus-periplasmic-chaperone	unknown	unknown	gnl\|CDD\|185177
NZ_CP019406.1\|WP_001079646.1\|2998969_2999506_+\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185168
NZ_CP019406.1\|WP_058106530.1\|2983966_2985766_-\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|182862
NZ_CP019406.1\|WP_000039870.1\|2981418_2982153_-\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NZ_CP019406.1\|WP_000178270.1\|2997981_2998488_+\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185178
NZ_CP019406.1\|WP_000210451.1\|2992401_2993202_-\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
NZ_CP019406.1\|WP_000029737.1\|2977269_2979933_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP019406.1\|WP_000842512.1\|2993809_2994397_+\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185169
NZ_CP019406.1\|WP_000210863.1\|2990536_2992174_-\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437
NZ_CP019406.1\|WP_000368579.1\|2975701_2977258_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
NZ_CP019406.1\|WP_000206417.1\|2974078_2975137_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|273843
NZ_CP019406.1\|WP_000108313.1\|2986189_2986552_+\|6-carboxytetrahydropterin-synthase-QueD	unknown	unknown	gnl\|CDD\|238264
NZ_CP019406.1\|WP_001290672.1\|2982254_2983967_-\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
NZ_CP019406.1\|WP_000117945.1\|2975150_2975705_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
NZ_CP019406.1\|WP_001199961.1\|2988348_2989020_-\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
NZ_CP019406.1\|WP_001207998.1\|2986639_2987437_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|224158
NZ_CP019406.1\|WP_000981797.1\|2994476_2997176_+\|fimbrial-biogenesis-outer-membrane-usher-protein	unknown	unknown	gnl\|CDD\|185176
NZ_CP019406.1\|WP_000832393.1\|2998502_2998973_+\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185179
NZ_CP019406.1\|WP_076734701.1\|2980377_2981331_+\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
NZ_CP019406.1\|WP_000036734.1\|2989155_2990454_-\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617

Protein	Function_ID	Function_description	E-value
NZ_CP019406.1\|WP_001044459.1\|2997188_2997962_+\|fimbria/pilus-periplasmic-chaperone	gnl\|CDD\|185177	PRK15274, PRK15274, putative periplasmic fimbrial chaperone protein SteC; Provisional.	0
NZ_CP019406.1\|WP_001079646.1\|2998969_2999506_+\|fimbrial-protein	gnl\|CDD\|185168	PRK15260, PRK15260, fimbrial protein SteF; Provisional.	7.785e-121
NZ_CP019406.1\|WP_058106530.1\|2983966_2985766_-\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
NZ_CP019406.1\|WP_000039870.1\|2981418_2982153_-\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	7.73232e-139
NZ_CP019406.1\|WP_000178270.1\|2997981_2998488_+\|fimbrial-protein	gnl\|CDD\|185178	PRK15275, PRK15275, putative fimbrial protein SteD; Provisional.	4.31975e-105
NZ_CP019406.1\|WP_000210451.1\|2992401_2993202_-\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	3.42454e-158
NZ_CP019406.1\|WP_000029737.1\|2977269_2979933_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	0
NZ_CP019406.1\|WP_000842512.1\|2993809_2994397_+\|fimbrial-protein	gnl\|CDD\|185169	PRK15261, PRK15261, fimbrial protein SteA; Provisional.	5.36845e-100
NZ_CP019406.1\|WP_000210863.1\|2990536_2992174_-\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NZ_CP019406.1\|WP_000368579.1\|2975701_2977258_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
NZ_CP019406.1\|WP_000206417.1\|2974078_2975137_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	4.28543e-133
NZ_CP019406.1\|WP_000108313.1\|2986189_2986552_+\|6-carboxytetrahydropterin-synthase-QueD	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	2.78454e-58
NZ_CP019406.1\|WP_001290672.1\|2982254_2983967_-\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
NZ_CP019406.1\|WP_000117945.1\|2975150_2975705_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	1.26497e-33
NZ_CP019406.1\|WP_001199961.1\|2988348_2989020_-\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	1.43874e-155
NZ_CP019406.1\|WP_001207998.1\|2986639_2987437_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|224158	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only].	1.00381e-102
NZ_CP019406.1\|WP_000981797.1\|2994476_2997176_+\|fimbrial-biogenesis-outer-membrane-usher-protein	gnl\|CDD\|185176	PRK15273, PRK15273, fimbrial biogenesis outer membrane usher protein.	0
NZ_CP019406.1\|WP_000832393.1\|2998502_2998973_+\|fimbrial-protein	gnl\|CDD\|185179	PRK15276, PRK15276, putative fimbrial subunit SteE; Provisional.	2.10162e-98
NZ_CP019406.1\|WP_076734701.1\|2980377_2981331_+\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
NZ_CP019406.1\|WP_000036734.1\|2989155_2990454_-\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0

>NZ_CP019406.1|WP_001207998.1|2986639_2987437_-|MBL-fold-metallo-hydrolase
MALRIRVLLENHKGAGADKSLKARPGLSLLVEDESTSILFDTGPDGSFMQNALAMGIDLSDVSAVVLSHGHYDHCGGVPWLPDNSRIICHPDIARERYAAMTFLGITRKIKKLSCEVDYSRYRMMYTRDPLPIGKNFIWSGEIPVVAPEAYGIFGGHDAEPDSILDEGVLIYQSTKGLVIITGCGHRGIANIVRHCQNITGIKRIYALVGGFHLRCASPFTLWRVRRFLQEQKPEKLCGCHCTGAWGRLWLPEITAPATGDVLRF
>NZ_CP019406.1|WP_000108313.1|2986189_2986552_+|6-carboxytetrahydropterin-synthase-QueD
MSTTLYKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFADLKAAFKPTYDRLDHYYLNDIPGLSNPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCVYRGE
>NZ_CP019406.1|WP_058106530.1|2983966_2985766_-|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit
MTTPAPLTGLLPLNPEQLARLQAATTDLTPEQLAWVSGYFWGVLNPRSGVVAVTPVPERKMPGVTLISASQTGNARRVAEALRDDLLAANLNVTLVNAGDYKFKQIASEKLLVIVTSTQGEGEPPEEAVALHKLLFSKKAPKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDVLKSRAPVAAPSQSVATGAVNDIHTSPYTKDAPLIATLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVDGKTLPLAEALEWHFELTVNTANIVENYATLTRSESLLPLVGDKAQLQHYAATTPIVDMVRFSPAQLDAEALIGLLRPLTPRLYSIASAQAEVESEVHVTVGVVRYDIEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPQTPVIMIGPGTGIAPFRAFMQQRAADGAEGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLSRIDLAWSRDQKEKIYVQDKLREQGAELWCWINDGAHIYVCGDARRMAADVEKALLEVIAEFGGMDLESADEYLSELRVERRYQRDVY
>NZ_CP019406.1|WP_001290672.1|2982254_2983967_-|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAEQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGLETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDNNWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQKAKIETLARDHGLMNAVSAQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGNRIGTRIPRMYQENITEPDILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>NZ_CP019406.1|WP_000039870.1|2981418_2982153_-|phosphoadenosine-phosphosulfate-reductase
MSKLDLNALNELPKVDRVLALAETNAQLETLTAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALKELKAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>NZ_CP019406.1|WP_076734701.1|2980377_2981331_+|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSSDKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGAKMTWHPELLQESISTLRKEVTGNAQIKAAVYEMMRPAEAPDHPLVEWQDSLTEDEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHTYSPFAEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLT
>NZ_CP019406.1|WP_000029737.1|2977269_2979933_-|CRISPR-associated-helicase/endonuclease-Cas3
MSIYHYWGKSRRGETDGGDDYHLLCWHSLDVAAVGYWMVINNIYFIDHYLKKLGIQDKEQAAQFFAWILCWHDIGKFAHSFQQLYRHEALNIFNEPTRHYEKIAHTTLGYMLWNSWLSECPELFPPSSLSVRKSKRVMALWMPVTTGHHGRPPEAIQELDHFRQQDKDAARDFLLRIKALFPLITLPEAWDEDEGIDQFQQLSWFISAAVVLADWTGSASRYFPRTAEKMPVDTYWQQALAKAQTAITLFPSAANVSAFTGIETLFPFIQHPTPLQQKALELDINVDGAQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLYFGLPTMATANAMFERMANTWLALYQPDSRPSLILAHSARRLMDRFNQSIWSVTLSGTEEPDEAQPYSQGCAAWFADSNKKALLAEVGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAWMSRILEGLIERQASNGNATILLSATLSQQQRDKLVAAFSRGVRRSVQAPLLGHDDYPWLTQVTQTELISQRVDTRKEVERCVDIGWLHSEEACLERIGEAVEKGNCIAWIRNSVDDAIRIYRQLQLSKVVATENLLLFHSRFAFHDRQRIESQTLNLFGKQSGAQRAGKVIIATQVIEQSLDIDCDEMISDLAPVDLLIQRAGRLQRHIRDRNGLVKKSGQDERETPVLRILAPEWDDAPRENWLSSAMRNSAYVYPDHGRMWLTQRILREQGTIRMPQSARLLIESVYGEDVNMPVGFAKTEQLQEGKFYCDRAFAGQMLLNFAPGYCAEISDSLPEKMSTRLAEESVTLWLAKIVDSVVTPYASGEHAWEMSVLRVRQSWWNKHKDEFEKLDGEPLRKWCAQQHQDKDFATVIVVTDFAACGYSANEGLIGMMGE
>NZ_CP019406.1|WP_000368579.1|2975701_2977258_-|type-I-E-CRISPR-associated-protein-Cse1/CasA
MDNFSLLTTPWLPVRFKDGSTGKLAPVDLADENVVDIAATRADLQGAAWQFLLGLLQCSIAPKRYKNWEDIWFDGLHADVLHKALAPLEHAFQFGAESPSFMQDFEPLSGEKVSIASLLPEIPGAQTTKFNKDHFVKRGVTERFCPHCAALALFSLQLNAPAGGKGYRTGLRGGGPLTTLVELQEYQGERQTPIWRKLWLNVMPQDTADLPLPDQCDATVFPWLAATRTSEQANAVTTPEQVNKLQAYWGMPRRIRLDFATLQSGCCDICGAESDELLGFMTVKNYGVNYDGWRHPLTPYRAPVKDQNAFFSVKPQPGGLIWRDWLGLSQNNQTEANYESPAQVVKVFNARSLTDVKAGIRGFGADFDNMKIRCWYEHHFPLLMTEGLIPDLRKAVQTAARLLSLLRSALKEAWFTNAKDARGDFSFIDIDFWNLTQGRFLNLIHDLENGHKPDERLNKWQRELWLFTRCYFDDHVFTNPYESSDLERIMKARKKYFTSSAEKQSAKAAKAKKQEAAE
>NZ_CP019406.1|WP_000117945.1|2975150_2975705_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSVVTKDDKATLRQWHDELQEKRGLRASLRRSKTVNDACLAEGLHSLLMQTHSLWKNKAPWNVTALAITAALAAHIKFIDEQKSFAAQLGQKKGGDTPVMSKLRFSHLLAVKTPDELLRQLRRAVKLLDGSVNLFSLADDIFCWCQEQNDLLNHHRRQQRPTEFLRIRWALEYYQAGDTDNEQD
>NZ_CP019406.1|WP_000206417.1|2974078_2975137_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRISSQSLKRAWRTSELFEQALAGHIGIRTGRIAREAAQILVDSGIDAKKAVEYVKNIANCFGKVKEDKKPKDELTNAETEQLVHISPAEFEAVKALARRLAEEKRPATEEEAELLRHDRMAVDIAMFGRMLAKKTDFNVEAACQVAHAFGVSETIIEDDFFTAVDDLRQASAEDAGAGHLGETGFGSALFYTYICIDKDLLVKNLNGNEELANKTLRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTDQLNVAVKRITALHENMNEVYAQETAFKNFNVMNQQGSMKDVLDFICA
>NZ_CP019406.1|WP_001199961.1|2988348_2989020_-|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILAKTKESDKWGAASSEDLLAVINRQGYTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA
>NZ_CP019406.1|WP_000036734.1|2989155_2990454_-|phosphopyruvate-hydratase
MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVGAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTENKSNFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKGKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>NZ_CP019406.1|WP_000210863.1|2990536_2992174_-|CTP-synthase-(glutamine-hydrolyzing)
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQLAVDIGREHALFMHLTLVPYLAAAGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISMKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIYEEANPAGEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVTVNIKLIDSQDVETRGVEILKDLDAILIPGGFGYRGVEGKIATARYARENNIPYLGICLGMQVALIEFARNVAGMDNANSTEFVPDCKYPVVALITEWRDEDGNVEVRSEKSDLGGTMRLGAQQCQLSDDSLVRQLYGASTIVERHRHRYEVNNMLLKQIEAAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAANEHQKRQAK
>NZ_CP019406.1|WP_000210451.1|2992401_2993202_-|nucleoside-triphosphate-pyrophosphohydrolase
MTTNHQIDRLLTLMQRLRDPENGCPWDKEQTFASIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFGELSADNSEEALVRWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCSNVGFDWTTLGPVVDKVYEEIDEVMFEARQAVVDQAKLEEEMGDLLFATVNMARHLGTKAELALQKANDKFERRFREVERIVAARGLEMTGVDLETMEEVWQEVKRQEIDL
>NZ_CP019406.1|WP_000842512.1|2993809_2994397_+|fimbrial-protein
MKSSHFCKLAVTASLVMGIVSGAQAAGSNTAKVTFLGNIVDSPCSVTLDTEDQTVNMGSSIGNGTLSNGKTTINNARTFHIDLEGCTWATEKNMNVVFTTGSGTTAATGATDNLALMKTDGTGAISNVSLAIGDAGKNNIKLGDTYTQAIADLDGDTILDEKQSLNFTAWLVGAATGTVGTGEFSSAANVTISYL
>NZ_CP019406.1|WP_000981797.1|2994476_2997176_+|fimbrial-biogenesis-outer-membrane-usher-protein
MMNNTWKSVLCPIACGVGMLLSLSPYSASGKDIEFNTDFLDVKNRDNVNIAQFSRKGFILPGVYLLQIKINGQTLPQEFPVNWVIPEHDPQGSEVCAEPELVTQLGIKPELAEKLVWITHGERQCLAPDSLKGMDFQADLGHSTLLVNLPQAYMEYSDVDWDPPARWDNGIPGIILDYNINNQLRHDQESGSEEQSISGNGTLGANLGAWRLRADWQASYDHRDDDENTSTLHDQSWSRYYAYRALPTLGAKLTLGESYLQSDVFDSFNYIGASVVSDDQMLPPKLRGYAPEIVGIARSNAKVKVSWQGRVLYETQVPAGPFRIQDLNQSVSGTLHVTVEEQNGQTQEFDVNTASVPFLTRPGMVRYKMALGRPQDWDHHPITGTFASAEASWGVTNGWSLYGGAIGESNYQAVALGSGKDLGVVGAVAVDITHSIAHMPQDDGFDGETLQGNSYRISYSRDFDEIDSRLTFAGYRFSEKNFMSMSDYLDAKTYHHLNAGHEKERYTVTYNQNFREQGMSAYFSYSRSTFWDSPDQSNYNLSLSWYFDLGSIKNLSASLNGYRSEYNGDKDDGVYISLSVPWGNDSISYNGTFNGSQHRNQLGYSGHSQNGDNWQLHVGQDEQGAQADGYYSHQGALTDIDLSADYEEGSYRSLGMSLRGGMTLTTQGGALHRGSLAGSTRLLVDTDGIADVPVSGNGSPTSTNIFGKAVIADVGSYSRSLARIDLNKLPEKAEATKSVVQITLTEGAIGYRHFDVVSGEKMMAVFRLADGDFPPFGAEVKNERQQQLGLVADDGNAWLAGVKAGETLKVFWDGAAQCEASLPSTFTPELLANALLLPCKMLEGQPPTAPQKSSPLPAQPLIQEHTQTDGQPAAPVATTTQTPPIPLADNHAVNRKDME
>NZ_CP019406.1|WP_001044459.1|2997188_2997962_+|fimbria/pilus-periplasmic-chaperone
MNKTNHFKRQALIASVLLAAPLVSHSAIVPDRTRVIFNGNENSITVTLKNGNATLPYLAQAWLEDDKFAKDTRYFTALPPLQRIEPKSDGQVKVQPLPAAASLPQDRESLFYFNVREIPPKSDKPNTLQLALQTRIKFFYRPVAVARQVDKTHPWQTKLTLTYQGDGVIFDNPTPFYLVISNAGSKENETASGFKNLLIAPREKVTSPIKGASLGSSPVVGYVDDYGGHRLLVFTCSGNTCKVNEEKTRDAEKKANK
>NZ_CP019406.1|WP_000178270.1|2997981_2998488_+|fimbrial-protein
MTMLTRWKMLVLLCGGFVTGTEAAGTKTVQLELHLVVTQPPPCTVGGASVEFGDVLTTKVGDASQTKPVGYSLNCDGRASDYLKLQIQGTTTTISGEQVLQTSVQGLGIRIQQAGNKQLVPVGITDWLNFTLSGSNGPELEAVPVKEPTTQLAGGDFNASATLVVDYQ
>NZ_CP019406.1|WP_000832393.1|2998502_2998973_+|fimbrial-protein
MKRVLILTLLITQFACADNLTFHGKLINPPACTINNGEMLEVSFGSVIIDNIDGVNYLTEIPWTLTCDSSFRDDALTFTLSYLGTATPYSAKALTTSVPELGIELQQNGTVFPPGTSLTINESSLPTLKAVPVKQPGKEPAEGDFEAFATLQVDYQ
>NZ_CP019406.1|WP_001079646.1|2998969_2999506_+|fimbrial-protein
MNRIFQTAGHLIGGVMLWAVCNTLPAATPNVHYSGKLVAGACNLVVDNDTMATVDFHTIGSDNFDASGQTTPVPFTLSLQDCKTALANGVLVTFQGVEDSTLPGLLALEPSSEASGFAIGVETAAQQPVSINATVGTAFVLKEGITTINLQARLQKYAGEEVMPGEFSGSATVSFEYQ

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP019406_2	2.3\|2987687\|32\|NZ_CP019406\|CRISPRCasFinder	2987687-2987718	32	MN694003	Marine virus AFVG_250M677, complete genome	17629-17660	8	0.75
NZ_CP019406_2	2.11\|2987687\|34\|NZ_CP019406\|CRT,PILER-CR	2987687-2987720	34	MN694003	Marine virus AFVG_250M677, complete genome	17627-17660	8	0.765
NZ_CP019406_1	1.1\|2970896\|32\|NZ_CP019406\|CRISPRCasFinder,CRT	2970896-2970927	32	NZ_MG266000	Clostridioides difficile strain 7032985 plasmid pCD-ISS1, complete sequence	5501-5532	9	0.719
NZ_CP019406_1	1.3\|2971018\|32\|NZ_CP019406\|CRISPRCasFinder,CRT	2971018-2971049	32	MK449011	Streptococcus phage Javan92, complete genome	36157-36188	9	0.719
NZ_CP019406_1	1.3\|2971018\|32\|NZ_CP019406\|CRISPRCasFinder,CRT	2971018-2971049	32	MK448835	Streptococcus phage Javan93, complete genome	36157-36188	9	0.719
NZ_CP019406_1	1.3\|2971018\|32\|NZ_CP019406\|CRISPRCasFinder,CRT	2971018-2971049	32	MK448836	Streptococcus phage Javan95, complete genome	37400-37431	9	0.719
NZ_CP019406_1	1.3\|2971018\|32\|NZ_CP019406\|CRISPRCasFinder,CRT	2971018-2971049	32	MK448825	Streptococcus phage Javan639, complete genome	37400-37431	9	0.719
NZ_CP019406_1	1.6\|2971201\|32\|NZ_CP019406\|CRISPRCasFinder,CRT	2971201-2971232	32	KY006853	Erythrobacter phage vB_EliS_R6L, complete genome	41418-41449	9	0.719
NZ_CP019406_1	1.9\|2970898\|32\|NZ_CP019406\|PILER-CR	2970898-2970929	32	NZ_MG266000	Clostridioides difficile strain 7032985 plasmid pCD-ISS1, complete sequence	5501-5532	9	0.719
NZ_CP019406_1	1.11\|2971020\|32\|NZ_CP019406\|PILER-CR	2971020-2971051	32	MK449011	Streptococcus phage Javan92, complete genome	36157-36188	9	0.719
NZ_CP019406_1	1.11\|2971020\|32\|NZ_CP019406\|PILER-CR	2971020-2971051	32	MK448835	Streptococcus phage Javan93, complete genome	36157-36188	9	0.719
NZ_CP019406_1	1.11\|2971020\|32\|NZ_CP019406\|PILER-CR	2971020-2971051	32	MK448836	Streptococcus phage Javan95, complete genome	37400-37431	9	0.719
NZ_CP019406_1	1.11\|2971020\|32\|NZ_CP019406\|PILER-CR	2971020-2971051	32	MK448825	Streptococcus phage Javan639, complete genome	37400-37431	9	0.719
NZ_CP019406_1	1.14\|2971203\|32\|NZ_CP019406\|PILER-CR	2971203-2971234	32	KY006853	Erythrobacter phage vB_EliS_R6L, complete genome	41418-41449	9	0.719
NZ_CP019406_2	2.8\|2987992\|32\|NZ_CP019406\|CRISPRCasFinder	2987992-2988023	32	CP006879	Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602b, complete sequence	405613-405644	9	0.719
NZ_CP019406_2	2.6\|2987870\|32\|NZ_CP019406\|CRISPRCasFinder	2987870-2987901	32	NZ_LR134399	Listeria monocytogenes strain NCTC7974 plasmid 2, complete sequence	103231-103262	10	0.688
NZ_CP019406_2	2.8\|2987992\|32\|NZ_CP019406\|CRISPRCasFinder	2987992-2988023	32	NZ_CP049244	Rhizobium pseudoryzae strain DSM 19479 plasmid unnamed3, complete sequence	699963-699994	10	0.688

1. spacer 2.3|2987687|32|NZ_CP019406|CRISPRCasFinder matches to MN694003 (Marine virus AFVG_250M677, complete genome) position: , mismatch: 8, identity: 0.75

cgattctacggcaacaggccaggctgcgaccg	CRISPR spacer
ggcgagcacggcaacagcccaggctgcgatcg	Protospacer
 *    .********** ***********.**

2. spacer 2.11|2987687|34|NZ_CP019406|CRT,PILER-CR matches to MN694003 (Marine virus AFVG_250M677, complete genome) position: , mismatch: 8, identity: 0.765

cgattctacggcaacaggccaggctgcgaccgcg	CRISPR spacer
ggcgagcacggcaacagcccaggctgcgatcgcg	Protospacer
 *    .********** ***********.****

3. spacer 1.1|2970896|32|NZ_CP019406|CRISPRCasFinder,CRT matches to NZ_MG266000 (Clostridioides difficile strain 7032985 plasmid pCD-ISS1, complete sequence) position: , mismatch: 9, identity: 0.719

tatttataagcgtgtcatctatgcaacccaac	CRISPR spacer
aatttataatcatgtcatctatgccataattc	Protospacer
 ******** *.************ *.    *

4. spacer 1.3|2971018|32|NZ_CP019406|CRISPRCasFinder,CRT matches to MK449011 (Streptococcus phage Javan92, complete genome) position: , mismatch: 9, identity: 0.719

ggccgctggtcaaattcccaatctgagcaatc	CRISPR spacer
tacatcttgacaaattcccaatctgagcgact	Protospacer
 .*  ** * ******************.*..

5. spacer 1.3|2971018|32|NZ_CP019406|CRISPRCasFinder,CRT matches to MK448835 (Streptococcus phage Javan93, complete genome) position: , mismatch: 9, identity: 0.719

ggccgctggtcaaattcccaatctgagcaatc	CRISPR spacer
tacatcttgacaaattcccaatctgagcgact	Protospacer
 .*  ** * ******************.*..

6. spacer 1.3|2971018|32|NZ_CP019406|CRISPRCasFinder,CRT matches to MK448836 (Streptococcus phage Javan95, complete genome) position: , mismatch: 9, identity: 0.719

ggccgctggtcaaattcccaatctgagcaatc	CRISPR spacer
tacatcttgacaaattcccaatctgagcgact	Protospacer
 .*  ** * ******************.*..

7. spacer 1.3|2971018|32|NZ_CP019406|CRISPRCasFinder,CRT matches to MK448825 (Streptococcus phage Javan639, complete genome) position: , mismatch: 9, identity: 0.719

ggccgctggtcaaattcccaatctgagcaatc	CRISPR spacer
tacatcttgacaaattcccaatctgagcgact	Protospacer
 .*  ** * ******************.*..

8. spacer 1.6|2971201|32|NZ_CP019406|CRISPRCasFinder,CRT matches to KY006853 (Erythrobacter phage vB_EliS_R6L, complete genome) position: , mismatch: 9, identity: 0.719

gagaatgctcatgcgcgtgagcgccatatatt	CRISPR spacer
cgaaatgatcatgcgcgtcagcgccattgcgt	Protospacer
 ..**** ********** ********    *

9. spacer 1.9|2970898|32|NZ_CP019406|PILER-CR matches to NZ_MG266000 (Clostridioides difficile strain 7032985 plasmid pCD-ISS1, complete sequence) position: , mismatch: 9, identity: 0.719

tatttataagcgtgtcatctatgcaacccaac	CRISPR spacer
aatttataatcatgtcatctatgccataattc	Protospacer
 ******** *.************ *.    *

10. spacer 1.11|2971020|32|NZ_CP019406|PILER-CR matches to MK449011 (Streptococcus phage Javan92, complete genome) position: , mismatch: 9, identity: 0.719

ggccgctggtcaaattcccaatctgagcaatc	CRISPR spacer
tacatcttgacaaattcccaatctgagcgact	Protospacer
 .*  ** * ******************.*..

11. spacer 1.11|2971020|32|NZ_CP019406|PILER-CR matches to MK448835 (Streptococcus phage Javan93, complete genome) position: , mismatch: 9, identity: 0.719

ggccgctggtcaaattcccaatctgagcaatc	CRISPR spacer
tacatcttgacaaattcccaatctgagcgact	Protospacer
 .*  ** * ******************.*..

12. spacer 1.11|2971020|32|NZ_CP019406|PILER-CR matches to MK448836 (Streptococcus phage Javan95, complete genome) position: , mismatch: 9, identity: 0.719

ggccgctggtcaaattcccaatctgagcaatc	CRISPR spacer
tacatcttgacaaattcccaatctgagcgact	Protospacer
 .*  ** * ******************.*..

13. spacer 1.11|2971020|32|NZ_CP019406|PILER-CR matches to MK448825 (Streptococcus phage Javan639, complete genome) position: , mismatch: 9, identity: 0.719

ggccgctggtcaaattcccaatctgagcaatc	CRISPR spacer
tacatcttgacaaattcccaatctgagcgact	Protospacer
 .*  ** * ******************.*..

14. spacer 1.14|2971203|32|NZ_CP019406|PILER-CR matches to KY006853 (Erythrobacter phage vB_EliS_R6L, complete genome) position: , mismatch: 9, identity: 0.719

gagaatgctcatgcgcgtgagcgccatatatt	CRISPR spacer
cgaaatgatcatgcgcgtcagcgccattgcgt	Protospacer
 ..**** ********** ********    *

15. spacer 2.8|2987992|32|NZ_CP019406|CRISPRCasFinder matches to CP006879 (Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602b, complete sequence) position: , mismatch: 9, identity: 0.719

gaatctggaggccaacagcgcggcgaaatcct	CRISPR spacer
gaatctggagggcgacagcgcggtcgaccctg	Protospacer
*********** *.*********. .* .*.

16. spacer 2.6|2987870|32|NZ_CP019406|CRISPRCasFinder matches to NZ_LR134399 (Listeria monocytogenes strain NCTC7974 plasmid 2, complete sequence) position: , mismatch: 10, identity: 0.688

atcaaacatggaaacccctttaatgagagcaa	CRISPR spacer
ctaaaacatggaaaccactgtaatgacgaatc	Protospacer
 * ************* ** ****** ..

17. spacer 2.8|2987992|32|NZ_CP019406|CRISPRCasFinder matches to NZ_CP049244 (Rhizobium pseudoryzae strain DSM 19479 plasmid unnamed3, complete sequence) position: , mismatch: 10, identity: 0.688

gaatctggaggccaacagcgcggcgaaatcct	CRISPR spacer
gtggtcataggccatcagcgcggcgatatccc	Protospacer
* . ... ****** *********** ****.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

935015 : 942328

Dickeya_phage(16.67%)

integrase,protease

attL 923753:923767|attR 942546:942560

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
923753:923767	attL	NA	NA	NA	NA
WP_001201751.1\|935015_936134_+	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	1.4e-08	38.9
WP_000125875.1\|936130_938077_+	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	2.0e-39	43.1
WP_000447499.1\|938206_938428_-	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	9.3e-18	64.2
WP_000520789.1\|938751_939072_+\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	4.5e-13	45.7
WP_000934064.1\|939102_941379_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	6.2e-165	42.3
WP_001117984.1\|941591_941789_-	hypothetical protein	NA	NA	NA	NA
WP_001539594.1\|941950_942328_-\|integrase	integrase	A0A077KET4	Ralstonia_phage	1.2e-20	41.0
942546:942560	attR	NA	NA	NA	NA

DBSCAN-SWA_2

992787 : 1092650

103

Salmonella_phage(39.66%)

portal,integrase,protease,terminase,lysis,capsid,tail,tRNA,head

attL 988412:988427|attR 1018356:1018371

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
988412:988427	attL	NA	NA	NA	NA
WP_001154025.1\|992787_993591_+\|tRNA	tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM	NA	NA	NA	NA
WP_001288828.1\|993583_994906_+	chromosome partition protein MukF	NA	NA	NA	NA
WP_000060025.1\|994886_995591_+	chromosome partition protein MukE	NA	NA	NA	NA
WP_000572746.1\|995590_1000057_+	chromosome partition protein MukB	NA	NA	NA	NA
WP_000925870.1\|1000401_1002252_+	L,D-transpeptidase	NA	NA	NA	NA
WP_000357052.1\|1002511_1003060_+	YcbK family protein	A0A0K1LKR7	Rhodobacter_phage	1.2e-05	33.7
WP_001109471.1\|1003087_1003735_+	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_058106851.1\|1003796_1004987_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA
WP_000977709.1\|1005171_1006263_-	porin OmpF	Q1MVN1	Enterobacteria_phage	1.7e-99	51.7
WP_000117867.1\|1006856_1008257_-\|tRNA	asparagine--tRNA ligase	A0A2K9V902	Bandra_megavirus	4.5e-81	35.8
WP_000762342.1\|1008457_1008919_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
WP_000544855.1\|1009236_1010451_+	diaminopropionate ammonia-lyase	NA	NA	NA	NA
WP_000893200.1\|1010696_1012133_+	sodium:alanine symporter family protein	NA	NA	NA	NA
WP_000191404.1\|1012210_1013413_-	nicotinate phosphoribosyltransferase	NA	NA	NA	NA
WP_001262311.1\|1013607_1014900_-\|integrase	site-specific integrase	S4TSP2	Salmonella_phage	1.3e-252	99.8
WP_000065276.1\|1014944_1015193_-	excisionase family protein	S4TND0	Salmonella_phage	4.7e-42	100.0
WP_001237031.1\|1015233_1015473_-	DUF4060 family protein	S4TR31	Salmonella_phage	2.0e-37	100.0
WP_001539618.1\|1015515_1016673_-	recombinase RecT	S4TTE8	Salmonella_phage	1.6e-217	100.0
WP_051124479.1\|1016635_1019563_-	exodeoxyribonuclease	S4TNL0	Salmonella_phage	0.0e+00	98.8
1018356:1018371	attR	NA	NA	NA	NA
WP_022742800.1\|1019689_1020040_-	hypothetical protein	S4TSN6	Salmonella_phage	6.4e-61	98.3
WP_000917563.1\|1020061_1020220_-	hypothetical protein	H6WRX3	Salmonella_phage	2.4e-23	100.0
WP_038988958.1\|1020848_1021220_-	ASCH domain-containing protein	Q6SE87	Lactobacillus_prophage	1.5e-31	50.0
WP_023226317.1\|1021197_1022259_-	hypothetical protein	NA	NA	NA	NA
WP_015406390.1\|1022328_1022724_-	helix-turn-helix domain-containing protein	K7PM35	Enterobacteria_phage	3.5e-47	72.5
WP_051124477.1\|1022828_1023065_+	Rha family transcriptional regulator	A0A0M4QX15	Salmonella_phage	2.6e-26	71.8
WP_010835408.1\|1023030_1023405_+	hypothetical protein	S4TTD7	Salmonella_phage	1.9e-63	98.4
WP_072208318.1\|1023496_1023685_+	hypothetical protein	NA	NA	NA	NA
WP_077946708.1\|1023699_1024755_+	DUF1376 domain-containing protein	A0A0U2RT81	Escherichia_phage	4.9e-40	53.2
WP_076734505.1\|1024757_1025507_+	DNA replication protein DnaC	H6WRX8	Salmonella_phage	3.3e-139	99.6
WP_000113626.1\|1025517_1025865_+	DUF977 family protein	H6WRX9	Salmonella_phage	4.5e-59	100.0
WP_000065089.1\|1025861_1026182_+	hypothetical protein	H6WRY0	Salmonella_phage	6.7e-25	65.5
WP_000974174.1\|1026181_1026427_+	hypothetical protein	Q5G8U9	Enterobacteria_phage	3.0e-33	88.9
WP_000132543.1\|1026737_1027955_+	hypothetical protein	J9Q803	Salmonella_phage	3.1e-118	53.3
WP_107251218.1\|1027935_1028004_+	DUF551 domain-containing protein	NA	NA	NA	NA
WP_000802853.1\|1028097_1028424_+	hypothetical protein	NA	NA	NA	NA
WP_001217669.1\|1028671_1028905_+	DinI family protein	H6WRY5	Salmonella_phage	5.6e-37	100.0
WP_014343878.1\|1029021_1029270_+	hypothetical protein	A0A0U2C0C8	Salmonella_phage	1.6e-42	100.0
WP_000929790.1\|1029304_1029907_+	DUF1367 family protein	S4TTI0	Salmonella_phage	7.5e-110	99.5
WP_051124475.1\|1030115_1030727_+	protein ninG	A0A0M4RU10	Salmonella_phage	7.9e-91	96.6
WP_000801757.1\|1030723_1030864_+	YlcG family protein	A0A0M5M7B2	Salmonella_phage	7.2e-08	78.9
WP_051124474.1\|1030860_1031541_+	antiterminator	I6PDF8	Cronobacter_phage	1.4e-59	53.1
WP_001534381.1\|1031850_1032039_+	hypothetical protein	NA	NA	NA	NA
WP_001526513.1\|1032241_1032544_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_024798992.1\|1032521_1033010_+	lysozyme	M9P0E5	Enterobacteria_phage	1.0e-56	68.1
WP_099800562.1\|1033030_1033471_+\|lysis	lysis protein	A0A0M4RD57	Salmonella_phage	6.2e-53	78.0
WP_000867564.1\|1033939_1034485_+\|terminase	terminase small subunit	K7P7G0	Enterobacteria_phage	4.5e-53	61.3
WP_021000150.1\|1034456_1036391_+\|terminase	phage terminase large subunit family protein	E4WL19	Enterobacteria_phage	7.0e-258	66.1
WP_000224407.1\|1036374_1036578_+\|head,tail	head-tail joining protein	K7PM10	Enterobacteria_phage	1.0e-18	80.0
WP_000820305.1\|1036574_1038161_+\|portal	phage portal protein	K7P6U7	Enterobacteria_phage	6.4e-185	60.7
WP_023233092.1\|1038150_1039665_+	S49 family peptidase	A0A0K2FI53	Enterobacteria_phage	2.1e-100	51.8
WP_000143301.1\|1039664_1040012_+\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	4.6e-19	52.7
WP_058106856.1\|1040066_1041095_+\|capsid	major capsid protein	A0A2I6TCE5	Escherichia_phage	9.2e-108	58.1
WP_000448213.1\|1041158_1041533_+	DNA breaking-rejoining protein	A0A2R9YJP4	Escherichia_phage	4.8e-06	34.9
WP_000083787.1\|1041543_1041900_+\|tail	tail attachment protein	K7P6U9	Enterobacteria_phage	1.8e-31	58.5
WP_000053601.1\|1041909_1042509_+\|tail	phage tail protein	A0A291AWZ0	Escherichia_phage	8.3e-69	68.7
WP_001032919.1\|1042508_1042910_+	hypothetical protein	A0A291AWY2	Escherichia_phage	8.1e-44	59.8
WP_000126419.1\|1042922_1043675_+\|tail	tail protein	A5LH35	Enterobacteria_phage	1.9e-94	70.0
WP_000478854.1\|1043723_1044113_+\|tail	phage minor tail protein G	A5LH36	Enterobacteria_phage	1.5e-31	58.9
WP_001175132.1\|1044133_1044436_+\|tail	phage tail assembly protein T	A5LH37	Enterobacteria_phage	2.8e-25	58.6
WP_000978295.1\|1045550_1045883_+\|tail	phage tail protein	A5LH39	Enterobacteria_phage	2.6e-35	61.5
WP_000725267.1\|1045981_1046479_+	outer membrane beta-barrel protein	A0A1B0VBR9	Salmonella_phage	1.4e-16	36.6
WP_000877926.1\|1046595_1047129_-	superoxide dismutase [Cu-Zn]	Q9MC02	Salmonella_phage	1.8e-46	54.0
WP_001152415.1\|1047218_1047914_+\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	1.3e-89	66.7
WP_000606351.1\|1047923_1048661_+\|tail	phage tail protein	A0A0P0ZE89	Stx2-converting_phage	1.6e-114	76.1
WP_000246065.1\|1048558_1049263_+\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	9.2e-67	62.6
WP_000178849.1\|1052723_1052966_+	hypothetical protein	NA	NA	NA	NA
WP_001144693.1\|1053019_1055458_+\|tail	tail protein	A0A0K2FIZ6	Escherichia_phage	8.3e-91	63.3
WP_000143167.1\|1055457_1056039_+\|tail	tail fiber assembly protein	A0A0M4RTP2	Salmonella_phage	1.7e-95	89.5
WP_076734507.1\|1056514_1057483_+	SPI-2 type III secretion system effector SseI	Q9MBL9	Phage_Gifsy-2	7.4e-192	98.8
WP_000334547.1\|1058010_1058637_-	SOS response-associated peptidase	A0A2H4J5W2	uncultured_Caudovirales_phage	1.4e-66	63.2
WP_031603423.1\|1058705_1059005_-	hypothetical protein	NA	NA	NA	NA
WP_001525490.1\|1058989_1059676_-	hypothetical protein	NA	NA	NA	NA
WP_000497441.1\|1059946_1060138_-	DinI-like family protein	S4TNM0	Salmonella_phage	6.2e-26	95.2
WP_000193790.1\|1060564_1063177_+	aminopeptidase N	A0A0P0IY26	Acinetobacter_phage	6.3e-20	22.8
WP_000291723.1\|1063384_1064395_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA
WP_001574119.1\|1064560_1065103_+	cell division protein ZapC	NA	NA	NA	NA
WP_000224079.1\|1065099_1066209_-	MOSC domain-containing protein	NA	NA	NA	NA
WP_001086485.1\|1066307_1068416_+	bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL	NA	NA	NA	NA
WP_000053044.1\|1068428_1070336_+	ABC transporter ATP-binding protein	A0A2K9L3Z8	Tupanvirus	2.4e-53	29.8
WP_000333139.1\|1070350_1071604_+	membrane integrity-associated transporter subunit PqiA	NA	NA	NA	NA
WP_000433414.1\|1071608_1073249_+	intermembrane transport protein PqiB	NA	NA	NA	NA
WP_000759136.1\|1073245_1073809_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA
WP_001537784.1\|1074064_1074232_+	ribosome modulation factor	NA	NA	NA	NA
WP_000227928.1\|1074331_1074850_-	bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase	NA	NA	NA	NA
WP_000156448.1\|1074918_1076679_-\|protease	Lon protease family protein	NA	NA	NA	NA
WP_000877172.1\|1076864_1077317_+	macrodomain Ter protein MatP	NA	NA	NA	NA
WP_001674965.1\|1077388_1078441_-	porin OmpA	NA	NA	NA	NA
WP_000288733.1\|1078797_1079307_-	cell division inhibitor SulA	NA	NA	NA	NA
WP_058106751.1\|1079523_1080129_+	TfoX/Sxy family DNA transformation protein	NA	NA	NA	NA
WP_000950876.1\|1080115_1082269_-	TIGR01666 family membrane protein	NA	NA	NA	NA
WP_001261222.1\|1082287_1082734_-	YccF domain-containing protein	NA	NA	NA	NA
WP_000420505.1\|1082857_1084912_+	DNA helicase IV	A7KV33	Bacillus_phage	8.5e-20	27.6
WP_000424187.1\|1084947_1085406_-	methylglyoxal synthase	NA	NA	NA	NA
WP_000847719.1\|1085500_1086163_-	DUF2057 family protein	NA	NA	NA	NA
WP_000975204.1\|1086333_1086750_+	CoA-binding protein	NA	NA	NA	NA
WP_000561983.1\|1086794_1087112_-	heat shock protein HspQ	NA	NA	NA	NA
WP_000140478.1\|1087169_1088381_-	23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	NA	NA	NA	NA
WP_000859416.1\|1088595_1089144_+	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA
WP_000548080.1\|1089169_1089949_+	AraC family transcriptional regulator	NA	NA	NA	NA
WP_000072884.1\|1089997_1090279_+	acylphosphatase	NA	NA	NA	NA
WP_000904449.1\|1090275_1090605_-	sulfurtransferase TusE	NA	NA	NA	NA
WP_076933795.1\|1090691_1091351_-\|protease	FtsH protease modulator YccA	A0A2H4JFM9	uncultured_Caudovirales_phage	2.7e-44	52.4
WP_000938186.1\|1091969_1092650_-\|protease	type III secretion system effector protease PipA	Q9MBM0	Phage_Gifsy-2	2.2e-81	71.0

DBSCAN-SWA_3

1264905 : 1281020

Salmonella_phage(30.77%)

integrase,lysis,holin,tail

attL 1264741:1264770|attR 1284362:1284391

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1264741:1264770	attL	NA	NA	NA	NA
WP_000087636.1\|1264905_1265985_-\|integrase	tyrosine-type recombinase/integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	3.0e-101	52.5
WP_001575998.1\|1265959_1266238_-	excisionase	A0A2H4J5E1	uncultured_Caudovirales_phage	1.4e-10	37.5
WP_001237395.1\|1266651_1268631_+	MBL fold metallo-hydrolase	A0A2P0VMX1	Tetraselmis_virus	1.9e-162	46.3
WP_000972675.1\|1269262_1269568_+	hypothetical protein	NA	NA	NA	NA
WP_058106734.1\|1269631_1270231_+	DUF1367 family protein	A0A0U2RT94	Escherichia_phage	1.4e-95	82.4
WP_000784710.1\|1270227_1270455_+	DNA breaking-rejoining protein	A0A0M4RU10	Salmonella_phage	2.2e-14	66.7
WP_001097218.1\|1270584_1271274_+	antitermination protein	I6PDF8	Cronobacter_phage	2.1e-60	54.9
WP_001574213.1\|1271370_1271895_+	hypothetical protein	NA	NA	NA	NA
WP_000798708.1\|1272268_1272718_-	hypothetical protein	NA	NA	NA	NA
WP_001574215.1\|1273078_1273765_-	PipA/GogA/GtgA family type III secretion system effector	Q9MBM0	Phage_Gifsy-2	1.8e-131	99.6
WP_001574216.1\|1274040_1274370_+\|holin	phage holin, lambda family	A0A0M3ULK9	Salmonella_phage	5.8e-56	100.0
WP_000984586.1\|1274353_1274806_+	lysozyme	A0A0M4R365	Salmonella_phage	2.3e-79	97.3
WP_001541990.1\|1274823_1275303_+\|lysis	lysis protein	Q56118	Enterobacteria_phage	1.4e-55	77.0
WP_000877926.1\|1276197_1276731_-	superoxide dismutase [Cu-Zn]	Q9MC02	Salmonella_phage	1.8e-46	54.0
WP_001152415.1\|1276820_1277516_+\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	1.3e-89	66.7
WP_072100756.1\|1280156_1281020_+	DUF1983 domain-containing protein	K7PKJ2	Enterobacteria_phage	9.0e-48	78.9
1284362:1284391	attR	NA	NA	NA	NA

DBSCAN-SWA_4

1505438 : 1516226

Escherichia_phage(72.73%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000123686.1\|1505438_1506812_+	ATP-dependent RNA helicase DbpA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	2.1e-51	32.0
WP_001156217.1\|1506855_1507791_-\|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	A0A0U2S5Z2	Escherichia_phage	7.2e-144	97.3
WP_001676915.1\|1508107_1508725_-	exodeoxyribonuclease	A0A088CD28	Shigella_phage	2.5e-36	41.9
WP_000800272.1\|1508752_1509070_-	hypothetical protein	NA	NA	NA	NA
WP_000560208.1\|1509154_1509376_-	cell division protein FtsZ	A0A0U2RTC4	Escherichia_phage	7.9e-33	83.6
WP_000004762.1\|1509813_1510335_+	hypothetical protein	NA	NA	NA	NA
WP_085981757.1\|1510442_1510598_-	DUF1391 domain-containing protein	M4QQ57	Salicola_phage	2.6e-06	48.9
WP_001227859.1\|1510983_1511451_-	helix-turn-helix domain-containing protein	A0A0U2QW76	Escherichia_phage	1.0e-53	66.9
WP_001676916.1\|1511723_1512053_+	DUF977 family protein	A0A0U2QQN3	Escherichia_phage	6.5e-23	51.7
WP_001033796.1\|1512214_1512769_-	hypothetical protein	NA	NA	NA	NA
WP_000556389.1\|1512765_1513698_-	hypothetical protein	NA	NA	NA	NA
WP_000882662.1\|1514067_1514280_+	type I toxin-antitoxin system Hok family toxin	A0A0U2QV81	Escherichia_phage	2.5e-28	95.7
WP_000940751.1\|1514803_1515403_+	DUF1367 family protein	A0A0U2RT94	Escherichia_phage	5.5e-97	82.9
WP_000774470.1\|1515402_1515693_+	DUF1364 domain-containing protein	A0A0U2KD41	Escherichia_phage	5.1e-40	76.0
WP_000640113.1\|1515689_1516226_+	DUF1133 family protein	A0A0U2S606	Escherichia_phage	1.4e-70	70.9

DBSCAN-SWA_5

1849121 : 1893667

Enterobacteria_phage(62.16%)

portal,integrase,holin,capsid,terminase,lysis,plate,tail,tRNA,head

attL 1848054:1848078|attR 1886356:1886380

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1848054:1848078	attL	NA	NA	NA	NA
WP_058106647.1\|1849121_1850075_-\|integrase	tyrosine-type recombinase/integrase	A0A0M4RTQ0	Salmonella_phage	2.0e-77	48.6
WP_058106648.1\|1850164_1850476_-	helix-turn-helix transcriptional regulator	Q1JS21	Enterobacteria_phage	5.4e-19	48.5
WP_058343723.1\|1850570_1850849_+	hypothetical protein	NA	NA	NA	NA
WP_058106649.1\|1851008_1851407_+	hypothetical protein	NA	NA	NA	NA
WP_020844112.1\|1851727_1851931_+	LapA family protein	NA	NA	NA	NA
WP_023170322.1\|1851900_1852092_+	hypothetical protein	NA	NA	NA	NA
WP_058106650.1\|1852167_1852608_+	hypothetical protein	NA	NA	NA	NA
WP_058106651.1\|1852604_1852862_+	hypothetical protein	NA	NA	NA	NA
WP_058106652.1\|1852849_1853383_+	hypothetical protein	NA	NA	NA	NA
WP_058106653.1\|1853379_1853619_+	hypothetical protein	NA	NA	NA	NA
WP_048590829.1\|1853615_1854581_+	Dam family site-specific DNA-(adenine-N6)-methyltransferase	A0A1B2IH14	Erwinia_phage	3.1e-57	42.4
WP_076734534.1\|1854559_1855078_+	hypothetical protein	NA	NA	NA	NA
WP_058106655.1\|1855074_1856094_+	DNA cytosine methyltransferase	A0A0M3ULA1	Salmonella_phage	1.0e-127	67.8
WP_058106656.1\|1856090_1858595_+	replication protein	A0A0M4RTM8	Salmonella_phage	6.0e-177	47.4
WP_048590832.1\|1858587_1859001_+	hypothetical protein	NA	NA	NA	NA
WP_058106657.1\|1859100_1859364_-	transcriptional regulator	NA	NA	NA	NA
WP_153302029.1\|1860216_1861932_-	type III secretion system protein	Q9MBM1	Phage_Gifsy-1	6.4e-138	54.4
WP_058106659.1\|1862981_1864031_-\|portal	phage portal protein	A0A0A7NPT9	Enterobacteria_phage	5.6e-153	73.9
WP_045900644.1\|1864030_1865764_-	helix-turn-helix domain-containing protein	A0A0A7NV54	Enterobacteria_phage	1.7e-263	75.1
WP_058106660.1\|1865920_1866757_+\|capsid	phage capsid protein	A0A0A7NRY7	Enterobacteria_phage	7.5e-100	65.8
WP_058106661.1\|1866780_1867866_+\|capsid	phage major capsid protein, P2 family	A0A0A7NQ82	Enterobacteria_phage	3.8e-136	68.4
WP_058106662.1\|1867912_1868743_+\|terminase	terminase	A0A0A7NPX9	Enterobacteria_phage	1.1e-90	65.5
WP_045900648.1\|1868845_1869340_+\|head	head completion/stabilization protein	A0A0A7NPU2	Enterobacteria_phage	2.2e-51	60.1
WP_001658929.1\|1869339_1869540_+	Tail component protein	A0A0A7NV57	Enterobacteria_phage	1.9e-22	80.3
WP_001658928.1\|1869569_1869908_+\|holin	phage holin, lambda family	NA	NA	NA	NA
WP_050154612.1\|1869904_1870348_+	lysozyme	A0A075B8L0	Enterobacteria_phage	8.1e-45	63.2
WP_058106664.1\|1870354_1870846_+\|lysis	lysis protein	S4TNN7	Salmonella_phage	2.7e-33	56.9
WP_058106665.1\|1870832_1871279_+\|tail	phage tail protein	A0A0A7NPU6	Enterobacteria_phage	2.5e-33	47.1
WP_048590845.1\|1871275_1871911_+	phage virion morphogenesis protein	A0A0A7NV60	Enterobacteria_phage	1.0e-64	59.8
WP_058106666.1\|1871907_1872498_+\|plate	phage baseplate assembly protein V	A0A0A7NRZ3	Enterobacteria_phage	2.4e-68	68.6
WP_001658912.1\|1872494_1872863_+\|plate	phage baseplate assembly protein	A0A0A7NQ90	Enterobacteria_phage	6.5e-40	71.3
WP_045900654.1\|1872849_1873746_+\|plate	baseplate assembly protein	A0A0A7NPY5	Enterobacteria_phage	1.5e-106	69.1
WP_058106667.1\|1873738_1874266_+\|tail	phage tail protein I	A0A0A7NPV1	Enterobacteria_phage	4.2e-56	60.6
WP_076734536.1\|1874271_1876320_+\|tail	phage tail protein	Q8HAB4	Salmonella_phage	2.2e-217	89.8
WP_078057117.1\|1876289_1876907_+\|tail	tail fiber assembly protein	A0A1B0VCD0	Salmonella_phage	3.0e-98	86.7
WP_076734537.1\|1876910_1877444_-\|tail	tail fiber assembly protein	A0A1S6KZZ1	Salmonella_phage	6.7e-78	80.9
WP_058106670.1\|1877446_1878313_-	hypothetical protein	A0A1S6KZZ8	Salmonella_phage	2.2e-147	91.7
WP_000980424.1\|1878464_1878953_-\|tail	phage tail protein	A0A0A7NV65	Enterobacteria_phage	1.5e-71	79.5
WP_076734538.1\|1878966_1881927_-\|tail	phage tail tape measure protein	A0A0A7NRZ9	Enterobacteria_phage	3.4e-256	51.7
WP_001627826.1\|1881913_1882072_-\|tail	GpE family phage tail protein	A0A0A7NQ96	Enterobacteria_phage	2.4e-15	79.6
WP_078057118.1\|1882077_1882434_-\|tail	phage tail protein	A0A0A7NPZ0	Enterobacteria_phage	3.4e-17	52.6
WP_000115856.1\|1882476_1882989_-\|tail	phage major tail tube protein	A0A0A7NPV8	Enterobacteria_phage	7.6e-63	68.0
WP_045900664.1\|1882989_1884177_-\|tail	phage tail sheath family protein	A0A0A7NV69	Enterobacteria_phage	4.8e-185	81.7
WP_076734539.1\|1884334_1885456_+	phage late control D family protein	A0A0A7NQ97	Enterobacteria_phage	1.1e-149	74.5
WP_024143245.1\|1885510_1885771_+	ogr/Delta-like zinc finger family protein	NA	NA	NA	NA
WP_023229131.1\|1886004_1886145_+	Hok/Gef family protein	A0A0A7NPZ4	Enterobacteria_phage	3.1e-11	71.7
WP_001229266.1\|1886500_1886800_-	integration host factor subunit alpha	A0A0H3UZA0	Geobacillus_virus	7.2e-13	40.0
1886356:1886380	attR	NA	NA	NA	NA
WP_000672408.1\|1886804_1889192_-\|tRNA	phenylalanine--tRNA ligase subunit beta	NA	NA	NA	NA
WP_000018570.1\|1889207_1890191_-\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2K9L3A8	Tupanvirus	1.1e-33	38.5
WP_001386830.1\|1890327_1890372_-\|tRNA	phenylalanyl--tRNA ligase operon leader peptide	NA	NA	NA	NA
WP_000124850.1\|1890492_1890849_-	50S ribosomal protein L20	NA	NA	NA	NA
WP_001124225.1\|1890899_1891097_-	50S ribosomal protein L35	NA	NA	NA	NA
WP_001574431.1\|1891192_1891735_-	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	4.8e-15	32.7
WP_001144217.1\|1891738_1893667_-\|tRNA	threonine--tRNA ligase	A0A2K9L297	Tupanvirus	5.5e-130	37.7

DBSCAN-SWA_6

2185006 : 2195513

Enterobacteria_phage(37.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000126349.1\|2185006_2186320_-	lipopolysaccharide biosynthesis protein RfbH	H8ZJ36	Ostreococcus_tauri_virus	7.0e-52	35.1
WP_000565913.1\|2186346_2187426_-	CDP-glucose 4,6-dehydratase	A0A222YY99	Synechococcus_phage	1.7e-16	24.5
WP_000648783.1\|2187430_2188204_-	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA
WP_000018223.1\|2188219_2189194_-	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA
WP_000973709.1\|2189199_2189751_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	1.3e-52	58.0
WP_058106732.1\|2189751_2190630_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	2.7e-108	65.5
WP_001023658.1\|2190677_2191577_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	5.1e-30	36.0
WP_000697846.1\|2191576_2192662_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.6e-102	53.9
WP_000981469.1\|2193038_2193932_-	GalU regulator GalF	A0A127AW70	Bacillus_phage	4.8e-44	42.2
WP_001144951.1\|2194109_2195513_-	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	4.0e-21	26.5

DBSCAN-SWA_7

2262711 : 2271882

Enterobacteria_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000195340.1\|2262711_2264745_+\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	6.1e-55	26.9
WP_000703145.1\|2264985_2265444_+	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	6.4e-53	72.5
WP_001197951.1\|2265615_2266146_+	YehR family lipoprotein	NA	NA	NA	NA
WP_000950414.1\|2266202_2266670_-	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	4.3e-73	89.7
WP_000598637.1\|2266716_2267436_-	two-component system response regulator BtsR	NA	NA	NA	NA
WP_000272845.1\|2267432_2269118_-	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	6.2e-279	91.1
WP_001240421.1\|2269340_2270072_+	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	1.7e-100	87.4
WP_001261696.1\|2270131_2270239_+	protein YohO	NA	NA	NA	NA
WP_000824854.1\|2270219_2270951_-	ABC transporter permease	NA	NA	NA	NA
WP_000569168.1\|2270934_2271882_-	ABC transporter ATP-binding protein	F2Y1V5	Organic_Lake_phycodnavirus	2.8e-10	27.8

DBSCAN-SWA_8

2508317 : 2514370

Salmonella_virus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000377779.1\|2508317_2509259_+	membrane protein	E7DYY8	Enterobacteria_phage	1.6e-146	87.8
WP_001576268.1\|2510501_2510891_+	GtrA family protein	A0A192Y6N5	Salmonella_phage	1.1e-50	85.6
WP_000703599.1\|2510859_2511114_+	glycosyltransferase	A8CG95	Salmonella_phage	3.1e-25	79.5
WP_000400616.1\|2511131_2513054_+	acyltransferase	A0A1R3Y5Q6	Salmonella_virus	5.6e-300	77.3
WP_105789228.1\|2514043_2514187_-	hypothetical protein	A0A1R3Y5S2	Salmonella_virus	1.7e-12	82.9
WP_105789229.1\|2514202_2514370_-	hypothetical protein	A0A1R3Y5S2	Salmonella_virus	1.3e-11	63.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP019406

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection