CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP019404	Salmonella enterica subsp. enterica serovar Bardo strain SA20113257 chromosome, complete genome	3 crisprs	WYL,DinG,cas3,DEDDh,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT	0	17	9	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP019404_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP019404_1

1295270-1295359

Orphan

Consensus_repeat	Method
TTGTCCAACGGATGTCCAACGGAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP019404_1

>merge|NZ_CP019404|1|1295270-1295359|CRISPRCasFinder
TTGTCCAACGGATGTCCAACGGATGTCCAACGCAAACACCAGTAATGACGCGGCTCACAGCAAATGTTGTCCAACGGATGTCCAACGATT

>NZ_CP019404|1|1|1295270-1295359|CRISPRCasFinder
TTGTCCAACGGATGTCCAACGGAT	GTCCAACGCAAACACCAGTAATGACGCGGCTCACAGCAAATG
TTGTCCAACGGATGTCCAACGATT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019404.1\|WP_076937893.1\|1298679_1299090_+\|DUF2591-family-protein	unknown	unknown	gnl\|CDD\|107039
NZ_CP019404.1\|WP_023200932.1\|1291331_1291664_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019404.1\|WP_000246166.1\|1291058_1291253_-\|Restriction-inhibitor-protein-ral	unknown	unknown	gnl\|CDD\|287970
NZ_CP019404.1\|WP_076937891.1\|1290315_1290975_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182159
NZ_CP019404.1\|WP_001108033.1\|1299251_1299863_+\|recombination-protein-NinG	unknown	unknown	gnl\|CDD\|368603
NZ_CP019404.1\|WP_000712403.1\|1293293_1293983_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225484
NZ_CP019404.1\|WP_001640862.1\|1298063_1298510_+\|recombination-protein-NinB	unknown	unknown	gnl\|CDD\|368607
NZ_CP019404.1\|WP_001103492.1\|1294419_1294701_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|336083
NZ_CP019404.1\|WP_000182204.1\|1294093_1294309_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|374243
NZ_CP019404.1\|WP_016048830.1\|1300043_1300223_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019404.1\|WP_001659073.1\|1299859_1300063_+\|phage-NinH-family-protein	unknown	unknown	gnl\|CDD\|283883
NZ_CP019404.1\|WP_000950975.1\|1299082_1299259_+\|protein-ninF	unknown	unknown	gnl\|CDD\|283468
NZ_CP019404.1\|WP_000654041.1\|1297274_1297547_+\|DUF4752-family-protein	unknown	unknown	gnl\|CDD\|339554
NZ_CP019404.1\|WP_119472050.1\|1294735_1294882_+\|DUF2740-family-protein	unknown	unknown	gnl\|CDD\|287804
NZ_CP019404.1\|WP_020899481.1\|1292281_1293205_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019404.1\|WP_023200930.1\|1295763_1297200_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|274672
NZ_CP019404.1\|WP_052934935.1\|1292042_1292246_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019404.1\|WP_001552357.1\|1297777_1298107_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019404.1\|WP_001254255.1\|1298506_1298683_+\|NinE-family-protein	unknown	unknown	gnl\|CDD\|283078
NZ_CP019404.1\|WP_001541875.1\|1289960_1290107_-\|protease-FtsH-inhibitory-lysogeny-factor-CIII	unknown	unknown	gnl\|CDD\|280268

Protein	Function_ID	Function_description	E-value
NZ_CP019404.1\|WP_076937893.1\|1298679_1299090_+\|DUF2591-family-protein	gnl\|CDD\|107039	PHA01519, PHA01519, hypothetical protein.	5.47244e-17
NZ_CP019404.1\|WP_000246166.1\|1291058_1291253_-\|Restriction-inhibitor-protein-ral	gnl\|CDD\|287970	pfam11058, Ral, Antirestriction protein Ral. Ral alleviates restriction and enhances modification by the E.Coli restriction and modification system.	9.61699e-32
NZ_CP019404.1\|WP_076937891.1\|1290315_1290975_-\|hypothetical-protein	gnl\|CDD\|182159	PRK09946, PRK09946, hypothetical protein; Provisional.	8.77402e-10
NZ_CP019404.1\|WP_000712403.1\|1293293_1293983_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|225484	COG2932, COG2932, Predicted transcriptional regulator [Transcription].	4.14427e-29
NZ_CP019404.1\|WP_001640862.1\|1298063_1298510_+\|recombination-protein-NinB	gnl\|CDD\|368607	pfam05772, NinB, NinB protein. The ninR region of phage lambda contains two recombination genes, orf (ninB) and rap (ninG), that have roles when the RecF and RecBCD recombination pathways of E. coli, respectively, operate on phage lambda. NinB binds to single-stranded DNA.	1.85059e-51
NZ_CP019404.1\|WP_001103492.1\|1294419_1294701_+\|hypothetical-protein	gnl\|CDD\|336083	pfam05269, Phage_CII, Bacteriophage CII protein. This family consists of several phage CII regulatory proteins. CII plays a key role in the lysis-lysogeny decision in bacteriophage lambda and related phages.	2.22453e-25
NZ_CP019404.1\|WP_000182204.1\|1294093_1294309_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|374243	pfam15943, YdaS_antitoxin, Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT. YdaS_antitoxin is a family of putative bacterial antitoxins, neutralising the toxin YdaT, family pfam06254.	4.10103e-21
NZ_CP019404.1\|WP_001659073.1\|1299859_1300063_+\|phage-NinH-family-protein	gnl\|CDD\|283883	pfam06322, Phage_NinH, Phage NinH protein. This family consists of several phage NinH proteins. The function of this family is unknown.	4.78069e-34
NZ_CP019404.1\|WP_000654041.1\|1297274_1297547_+\|DUF4752-family-protein	gnl\|CDD\|339554	pfam15944, DUF4752, Domain of unknown function (DUF4752). This family of proteins is found in bacteria and viruses. Proteins in this family are typically between 90 and 105 amino acids in length. There is a conserved GLA sequence motif.	2.36764e-30
NZ_CP019404.1\|WP_119472050.1\|1294735_1294882_+\|DUF2740-family-protein	gnl\|CDD\|287804	pfam10872, DUF2740, Protein of unknown function (DUF2740). This family of proteins with unknown function has a highly conserved sequence.	6.53118e-18
NZ_CP019404.1\|WP_023200930.1\|1295763_1297200_+\|AAA-family-ATPase	gnl\|CDD\|274672	TIGR03600, phage_DnaB, phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model. [Mobile and extrachromosomal element functions, Prophage functions].	0
NZ_CP019404.1\|WP_001108033.1\|1299251_1299863_+\|recombination-protein-NinG	gnl\|CDD\|368603	pfam05766, NinG, Bacteriophage Lambda NinG protein. NinG or Rap is involved in recombination. Rap (recombination adept with plasmid) increases lambda-by-plasmid recombination catalyzed by Escherichia coli's RecBCD pathway.	1.22262e-91
NZ_CP019404.1\|WP_000950975.1\|1299082_1299259_+\|protein-ninF	gnl\|CDD\|283468	pfam05810, NinF, NinF protein. This family consists of several bacteriophage NinF proteins as well as related sequences from E. coli.	3.21203e-21
NZ_CP019404.1\|WP_001254255.1\|1298506_1298683_+\|NinE-family-protein	gnl\|CDD\|283078	pfam05322, NinE, NINE Protein. This family consists of NINE proteins from several bacteriophages and from E. coli.	2.29903e-23
NZ_CP019404.1\|WP_001541875.1\|1289960_1290107_-\|protease-FtsH-inhibitory-lysogeny-factor-CIII	gnl\|CDD\|280268	pfam02061, Lambda_CIII, Lambda Phage CIII. The CIII protein from bacteriophage lambda is an inhibitor of the FtsH peptidase.	2.8192e-16

>NZ_CP019404.1|WP_119472050.1|1294735_1294882_+|DUF2740-family-protein
MPKQLSPDQDKLHKNILRDRFLSSFKQLGRFRAELEKVKLILKRKGHE
>NZ_CP019404.1|WP_001103492.1|1294419_1294701_+|hypothetical-protein
MNVVATKSKKAARIESTLLNKLAMMGQKTFAKAMGVPEYQVSRWKNGFFSQVSMMLAVLEYGIEDEEMAELTRRLATYLTKEKAPKNGEFFEA
>NZ_CP019404.1|WP_000182204.1|1294093_1294309_+|helix-turn-helix-domain-containing-protein
MTNKAIQKAVAIAGSQQKLASLCGVKQPTVWRWLHGGGIDAKYVAAIVKATGGRIKARELRPDLADLLAAS
>NZ_CP019404.1|WP_000712403.1|1293293_1293983_-|helix-turn-helix-transcriptional-regulator
MKKETLSDRLNKAMELAGMSQGALAKASGVAQPTIWRLTSGNARGSTKIVEIANALGVNSEWLSTGIGPMKKDGTTPINASPSSNTFKIDILDLEVSAGPGVINREFVEILRSVEYSQDDARHMFDGRKAENIRIINVRGDSMSGTIEPGDLLFVDVSIKNFDGDGIYAFLYDDTAHVKRLQKMKDKLLVISDNKSYSAWDPIERDEMNRVFVFGKVIGSMPQTYRKHG
>NZ_CP019404.1|WP_020899481.1|1292281_1293205_-|hypothetical-protein
MVNQIRSISPRQGNLQLFPVKEVEVEGVAMGVLNDGTPYLTGRGLAEMCGVHHSVIQDISSDWASERLKPRGKKIDTVLLDQGIDVDSLYIPSSETKRDHYPYPDYVCMAILEYYAFDASQANNATALRNYRLLARQTLREFIFRSVGIDPRNPVSGAWKCFQERIILNDKIPAGFFSVFREMVDITVPLINAGFELGPKTVPDISVGTRWANHWKRNNLSEKYGEIQKHPHVYPDWFPQSKAGKVPANIYPEEALGEFRRWLREDYVPKGFKDYLADKVQQKVIENAKAIEVLENLQRPELPNKKN
>NZ_CP019404.1|WP_052934935.1|1292042_1292246_+|hypothetical-protein
MKSEEEFFAELHPQVVEVLGTAVMQVLVEQREPSREALIEMIQVLWQEEDVDLAVELAIDVLRLPKE
>NZ_CP019404.1|WP_023200932.1|1291331_1291664_-|hypothetical-protein
MTVITYGKSTFAGNAKARRHARRRKLAIERDTICNIIDSIFGCDAPDASQEVKAKRIDRVTKAISLAGTRQKKVEVTAVKKNRIYYRDVNPLGNKIHAVQRMKLSSKPLI
>NZ_CP019404.1|WP_000246166.1|1291058_1291253_-|Restriction-inhibitor-protein-ral
MATTIDTNQWCSRFVKCKGCKLDSECMVKPEEMALVREDGKIVDKWAIRTTAMIARELEKLKAT
>NZ_CP019404.1|WP_076937891.1|1290315_1290975_-|hypothetical-protein
MTKEIVTFKGFNKDLTCRDFQFAIGETFHHDGKVEACGSGFHACECPFDVFSYYPPAESRYAETISFGVIDREEEGDTKIASASITIKSELTLPQFIQRGIEWIWSKIDKSLEQQIMTGDWSAATNTGNRSAATNTGYQSAATNTGDWSAAEVSGSQSVAASLGIEGKARASEGGAIVLCYRDEDGELIHIRASKVGENGIMPDIWYQLNEDGEFVECE
>NZ_CP019404.1|WP_001541875.1|1289960_1290107_-|protease-FtsH-inhibitory-lysogeny-factor-CIII
MTFAIAGGAVMGIAHLNESLLERITRKLRAGWKRLVDILNQPGVPCNG
>NZ_CP019404.1|WP_023200930.1|1295763_1297200_+|AAA-family-ATPase
MTDNFYAPPHSIEAEQAVIGGLLLDDDSSERVQKVLAMLKPDSFYSRPHKILFEEITRMHREQKPVDGLTLFDELERKSLTVSVGGFAYIADIAKNTPSAANIVAYAMQVRETAMERYAINRMTEATELLYSRNGMTATQKYEAIQAIFTQLTDHAKTGSRRGLRSFGEVMEDWVGDLEKRFDPSGEQRGMSTGIPSLDRMLSPKGLVKGSLFVIGARPKMGKTTLYSQMAINCAVHEKKAALMFSLEMPGDQILEKLVGQKSGVNPNIFYLPATNDADDGYQGDYDGDFNRAIETANRLSEIDLLYIDDTPGLSLAQIVSESRRIKREKGGVGMILVDYLTLMTAEKADRNDLAYGMITKGLKNLAKELDCVVVLLTQLNRALESRTNKRPLPSDSRDTGQIEQDCDYWVGIHREGAFDDSVPPGETELILRLNRHGNTGTVYCIQANGAIYDTDQQSAEMRRREREEPQSKKKGGF
>NZ_CP019404.1|WP_000654041.1|1297274_1297547_+|DUF4752-family-protein
MKDLLVTLNVGLSLLGYAYIMFKTGQWIITNTLKQWDKRRKVSAKQKAVDALYEAYELDKVSEGDTVKVATKEGLVIMICRHEKTNTPAR
>NZ_CP019404.1|WP_001552357.1|1297777_1298107_+|hypothetical-protein
MDESRKQFEEWFKNKYHVSSDVMKIMHIKVEIAWEAWQASRAAIELDIDWPESNDDFWRDGEEGAYAMGYEDGRDKTVIAVMKAIRAAGIKEKNFDEANIHASQRSNQK
>NZ_CP019404.1|WP_001640862.1|1298063_1298510_+|recombination-protein-NinB
MKQIYMLRNEAIRNNAIDAILSLPIDDKSPHEVHVKEPKRTKAQNDRMWPMLQDVSRQVLWHGQRLSPEDWKDIFTALWLKTKKLEQRSVPGIDGGVVLLGVRTSKMRKASMTELIEIMFWFGSERNVRWSDDSRREYEWSQRTGRAA
>NZ_CP019404.1|WP_001254255.1|1298506_1298683_+|NinE-family-protein
MRRQRRSITDIICENCKYLPTKRSRNKRKPIPKESDVKTFNYTAHLWDIRWLRHRARK
>NZ_CP019404.1|WP_076937893.1|1298679_1299090_+|DUF2591-family-protein
MTMDYSQLSDFEINKRVCEALDMEEHFFIPDDEADFDSEIPTDERGPIWQTQKRDINGFRASNGNCFNPCNNPEYAWPIITENNISIILDNPSMPCATDNARDLFDDAGPNVGVAYDNPLRAAMIVFLMMQDANNA
>NZ_CP019404.1|WP_000950975.1|1299082_1299259_+|protein-ninF
MLSPSQSLQYQKESVERALTCANCGQKLHVLEVHVCSDCCAELMSDPNSSMYEEEDDG
>NZ_CP019404.1|WP_001108033.1|1299251_1299863_+|recombination-protein-NinG
MAKPARRRCKNDECREWFHPAFANQWWCSPECGTKIALERRSKEREKAEKAAEKKRRREEQKQKDKLKIRKLALKPRSYWIKQAQQAVNAFIRERDRDLPCISCGTLTSAQWDAGHYRTTAAAPQLRFDERNIHKQCVVCNQHKSGNLVPYRVELINRIGQEAVDEIESNHNRHRWTVEECKAIKAEYQQKLKDLRNSRSEAA
>NZ_CP019404.1|WP_001659073.1|1299859_1300063_+|phage-NinH-family-protein
MTFSVKTIPDMLVEAYGNQTEVARRLSCHRNTVRRYLYDKEARYHAIVNGVLMIHQGGRGIYDRNQH
>NZ_CP019404.1|WP_016048830.1|1300043_1300223_+|hypothetical-protein
MTVTSINQAKQQSERDEAELRSVREMTEQHQKAMDYLHERERELVNRLGLNKPAGGDAA

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Crispr_ID: NZ_CP019404_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP019404_2

3064157-3064795

TypeI-E

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRISPRCasFinder
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRT
CGGTTTATCCCCGCTGGCGCGGGGAACA	PILER-CR

10 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of NZ_CP019404_2

>merge|NZ_CP019404|2|3064157-3064795|CRISPRCasFinder,CRT,PILER-CR
GTGTTTATCCCCGCTGACGCGGGGAACATTTTTCAGCCCTTGCCGACTGCGGAACGCCCCTCGGTTTATCCCCGCTAGCGCGGGGAAGACTTCCGGAGTGACTGGTATCGCGACGTATTCAACGGCTTATCCCCGCTGGCGCGGGGAACACTCCACCAGATTTTCAAAATCACGCAGGGCGCGCGGTTTATCCCCGCTGGCGCGGGGAACACGTGATTAGCCAGTCTTTAGAGGACATAATCCCCGGTTTATCCCCGCTGGCGCGGGGAACACTCACCGCCACGCGGGCCGCTATTGAGCGAATGCGGTTTATCCCCGCTGGCGCGGGGAACACAACTCAATGCGCTGGTTTAATCTTTCGTTAGTCGGTTTATCCCCGCTGGCGCGGGGAACACACGATGAGGAGGACGAACCGCAATTTTTCACTCGGTTTATCCCCGCTGGCGCGGGGAACACGCGTAGCGTTCAGCGAGGCGGTTATCACCCCCCGGTTTATCCCCGCTGGCGCGGGGAACACATTTGAACGCACATCAACATGCGTAAAAGATGCGGTTTATCCCCGCTGGCGCGGGGAACACAGGCTACCCAACGCCCCCACGCTACAGGCTGGCGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP019404|2|2|3064157-3064795|CRISPRCasFinder
GTGTTTATCCCCGCTGACGCGGGGAACAT	TTTTCAGCCCTTGCCGACTGCGGAACGCCCCT
CGGTTTATCCCCGCTAGCGCGGGGAAGAC	TTCCGGAGTGACTGGTATCGCGACGTATTCAA
CGGCTTATCCCCGCTGGCGCGGGGAACAC	TCCACCAGATTTTCAAAATCACGCAGGGCGCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTGATTAGCCAGTCTTTAGAGGACATAATCCC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCACCGCCACGCGGGCCGCTATTGAGCGAATG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AACTCAATGCGCTGGTTTAATCTTTCGTTAGT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACGATGAGGAGGACGAACCGCAATTTTTCACT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCGTAGCGTTCAGCGAGGCGGTTATCACCCCC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATTTGAACGCACATCAACATGCGTAAAAGATG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGGCTACCCAACGCCCCCACGCTACAGGCTGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP019404|2|1|3064157-3064795|CRT
GTGTTTATCCCCGCTGACGCGGGGAACAT	TTTTCAGCCCTTGCCGACTGCGGAACGCCCCT
CGGTTTATCCCCGCTAGCGCGGGGAAGAC	TTCCGGAGTGACTGGTATCGCGACGTATTCAA
CGGCTTATCCCCGCTGGCGCGGGGAACAC	TCCACCAGATTTTCAAAATCACGCAGGGCGCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTGATTAGCCAGTCTTTAGAGGACATAATCCC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCACCGCCACGCGGGCCGCTATTGAGCGAATG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AACTCAATGCGCTGGTTTAATCTTTCGTTAGT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACGATGAGGAGGACGAACCGCAATTTTTCACT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCGTAGCGTTCAGCGAGGCGGTTATCACCCCC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATTTGAACGCACATCAACATGCGTAAAAGATG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGGCTACCCAACGCCCCCACGCTACAGGCTGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP019404|2|1|3064159-3064794|PILER-CR
GTTTATCCCCGCTGACGCGGGGAACATT	TTTCAGCCCTTGCCGACTGCGGAACGCCCCTCG
GTTTATCCCCGCTAGCGCGGGGAAGACT	TCCGGAGTGACTGGTATCGCGACGTATTCAACG
GCTTATCCCCGCTGGCGCGGGGAACACT	CCACCAGATTTTCAAAATCACGCAGGGCGCGCG
GTTTATCCCCGCTGGCGCGGGGAACACG	TGATTAGCCAGTCTTTAGAGGACATAATCCCCG
GTTTATCCCCGCTGGCGCGGGGAACACT	CACCGCCACGCGGGCCGCTATTGAGCGAATGCG
GTTTATCCCCGCTGGCGCGGGGAACACA	ACTCAATGCGCTGGTTTAATCTTTCGTTAGTCG
GTTTATCCCCGCTGGCGCGGGGAACACA	CGATGAGGAGGACGAACCGCAATTTTTCACTCG
GTTTATCCCCGCTGGCGCGGGGAACACG	CGTAGCGTTCAGCGAGGCGGTTATCACCCCCCG
GTTTATCCCCGCTGGCGCGGGGAACACA	TTTGAACGCACATCAACATGCGTAAAAGATGCG
GTTTATCCCCGCTGGCGCGGGGAACACA	GGCTACCCAACGCCCCCACGCTACAGGCTGGCG
GTTTATCCCCGCTGGCGCGGGGAACA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019404.1\|WP_000029748.1\|3070678_3073342_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP019404.1\|WP_000085110.1\|3066733_3067480_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
NZ_CP019404.1\|WP_000134246.1\|3056765_3057815_-\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
NZ_CP019404.1\|WP_001219244.1\|3057811_3058291_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
NZ_CP019404.1\|WP_000372381.1\|3061936_3062845_-\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375
NZ_CP019404.1\|WP_000281481.1\|3066101_3066752_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|273869
NZ_CP019404.1\|WP_001092256.1\|3060487_3061927_-\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
NZ_CP019404.1\|WP_001537530.1\|3059521_3059845_-\|DUF3561-family-protein	unknown	unknown	gnl\|CDD\|371891
NZ_CP019404.1\|WP_000368586.1\|3069107_3070667_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
NZ_CP019404.1\|WP_001518648.1\|3064891_3065185_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
NZ_CP019404.1\|WP_000490481.1\|3063095_3064142_+\|aminopeptidase	unknown	unknown	gnl\|CDD\|182299
NZ_CP019404.1\|WP_001221537.1\|3056023_3056785_-\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
NZ_CP019404.1\|WP_000080405.1\|3074951_3075686_-\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NZ_CP019404.1\|WP_000741650.1\|3058290_3059001_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
NZ_CP019404.1\|WP_000029526.1\|3068562_3069111_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
NZ_CP019404.1\|WP_000144835.1\|3065184_3066105_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NZ_CP019404.1\|WP_001173663.1\|3059895_3060501_-\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
NZ_CP019404.1\|WP_000517480.1\|3059019_3059331_-\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
NZ_CP019404.1\|WP_001145544.1\|3073785_3074739_+\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
NZ_CP019404.1\|WP_000206421.1\|3067490_3068549_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|273843

Protein	Function_ID	Function_description	E-value
NZ_CP019404.1\|WP_000029748.1\|3070678_3073342_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	0
NZ_CP019404.1\|WP_000085110.1\|3066733_3067480_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	1.38373e-47
NZ_CP019404.1\|WP_000134246.1\|3056765_3057815_-\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
NZ_CP019404.1\|WP_001219244.1\|3057811_3058291_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	1.27909e-104
NZ_CP019404.1\|WP_000372381.1\|3061936_3062845_-\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
NZ_CP019404.1\|WP_000281481.1\|3066101_3066752_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	6.2871e-76
NZ_CP019404.1\|WP_001092256.1\|3060487_3061927_-\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
NZ_CP019404.1\|WP_001537530.1\|3059521_3059845_-\|DUF3561-family-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	3.31009e-48
NZ_CP019404.1\|WP_000368586.1\|3069107_3070667_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	5.17383e-173
NZ_CP019404.1\|WP_001518648.1\|3064891_3065185_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	1.1867e-62
NZ_CP019404.1\|WP_000490481.1\|3063095_3064142_+\|aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
NZ_CP019404.1\|WP_001221537.1\|3056023_3056785_-\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	7.64916e-147
NZ_CP019404.1\|WP_000080405.1\|3074951_3075686_-\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	1.61797e-139
NZ_CP019404.1\|WP_000741650.1\|3058290_3059001_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	2.67998e-119
NZ_CP019404.1\|WP_000029526.1\|3068562_3069111_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	8.80691e-33
NZ_CP019404.1\|WP_000144835.1\|3065184_3066105_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	3.09819e-157
NZ_CP019404.1\|WP_001173663.1\|3059895_3060501_-\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	4.61291e-146
NZ_CP019404.1\|WP_000517480.1\|3059019_3059331_-\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	1.08865e-64
NZ_CP019404.1\|WP_001145544.1\|3073785_3074739_+\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
NZ_CP019404.1\|WP_000206421.1\|3067490_3068549_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	9.1402e-138

>NZ_CP019404.1|WP_000490481.1|3063095_3064142_+|aminopeptidase
MFSATRRFAVILALGVGFILPAQAASPGPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLDNLIVGDKLYFNSGKNTPEAVRTLTRDRALAIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS
>NZ_CP019404.1|WP_000372381.1|3061936_3062845_-|sulfate-adenylyltransferase-subunit-CysD
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDHFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF
>NZ_CP019404.1|WP_001092256.1|3060487_3061927_-|sulfate-adenylyltransferase-subunit-CysN
MNTILAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTLQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYREETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSANMRWYSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNLDFRGYAGTLASGSVKVGERIKVLPSGVESSVARIVTFDGDKEEACAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMAEQPLAPGQSYDVKLAGKKTRARIEAIRYQIDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVRELDERGATPPVEYSAFELELNALVRRHFPHWDARDLLGDKHGAA
>NZ_CP019404.1|WP_001173663.1|3059895_3060501_-|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVAAREQLHGHRGVVLWFTGLSGSGKSTVAGALEEALHQRGVSTYLLDGDNVRHGLCRDLGFSDADRQENIRRVGEVASLMADAGLIVLTAFISPHRAERQLVKERVGHDRFIEIYVNTPLAICEQRDPKGLYKKARAGELRNFTGIDAIYEAPDSPQVHLNGEQLVTNLVSQLLDLLRRRDIIRS
>NZ_CP019404.1|WP_001537530.1|3059521_3059845_-|DUF3561-family-protein
MRNSHNITFTRSDAFMVDDDATSAFPGAVVGFVSWLLALGIPFLLYGPNTLFFFLYTWPFFLALMPVSVIIGIALHLLVKGKILFSIMFTLLAVGALFGALFIWLLG
>NZ_CP019404.1|WP_000517480.1|3059019_3059331_-|cell-division-protein-FtsB
MGKLTLLLLALLVWLQYSLWFGKNGIHDYSRVNDDVVAQQATNAKLKARNDQLFAEIDDLNGGQEAIEERARNELSMTKPGETFYRLVPDASKRAATAGQTHR
>NZ_CP019404.1|WP_000741650.1|3058290_3059001_-|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MAATLLDVCAVVPAAGFGRRMQTECPKQYLSIGNKTILEHSVHALLAHPRVTRVVIAISPGDHRFAQLPLANHPQITVVDGGNERADSVLAGLQAVAKAQWVLVHDAARPCLHQDDLARLLAISENSRVGGILASPVRDTMKRGEPGKNAIAHTVERADLWHALTPQFFPRELLYDCLTRALNEGATITDEASALEYCGFHPALVEGRADNIKVTRPEDLALAEFYLTRTIHQEKA
>NZ_CP019404.1|WP_001219244.1|3057811_3058291_-|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLMKAAK
>NZ_CP019404.1|WP_000134246.1|3056765_3057815_-|tRNA-pseudouridine(13)-synthase-TruD
MTEFDNLTWLHGKPQGSGLLKANPEDFVVVEDLGFTPDGEGEHILLRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDFSAFQLEGCKVLEYARHKRKLRLGALKGNAFTLVLREISDRRDVETRLQAIRDGGVPNYFGAQRFGIGGSNLQGALRWAQSNAPVRDRNKRSFWLSAARSALFNQIVHQRLKKPDFNQVVDGDALQLAGRGSWFVATSEELPELQRRVDEKELMITASLPGSGEWGTQRAALAFEQDAIAQETVLQSLLLREKVEASRRAMLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVVRELINTMGDYAHIAE
>NZ_CP019404.1|WP_001221537.1|3056023_3056785_-|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLNGYQHYDTAAAVTCALLRGLSREPLRTGRILNVNVPDLPLAQIKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVDEGYVSVTPLHVDLTAHSAHDVVSDWLDSVGVGTQW
>NZ_CP019404.1|WP_001518648.1|3064891_3065185_-|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMVVVVTENVPPRLRGRLAVWLLEVRAGVYVGDTSKRIREMIWQQITQLGGVGNVVMAWATNTESGFEFQTWGENRRIPVDLDGLRLVSFLPVENQ
>NZ_CP019404.1|WP_000144835.1|3065184_3066105_-|type-I-E-CRISPR-associated-endonuclease-Cas1
MTFVPLNPIPLKDRTSMIFLQYGQIDVLDGAFVLIDKTGVRTHIPVGSVACIMLEPGTRVSHAAVHLASTVGTLLVWVGEAGVRVYSSGQPGGARADKLLYQAKLALDDDLRLKVVRKMYELRFREPPPARRSVEQLRGIEGSRVRATYALLAKQYGVKWHGRNYDPKDWEKGDVVNRCISAATSCLYGISEAAILAAGYAPAIGFIHSGKPLSFVYDIADIIKFESVVPKAFEIAARHPAEPDKEVRLACRDIFRSSKLTGKLIPLIEEVLAAGEIKPPQPAPDMLPPAIPEPESLGDSGHRGHG
>NZ_CP019404.1|WP_000281481.1|3066101_3066752_-|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRITLHTSELSPAQLLHLVERGEYVMHQWLWDLFPGGKERQFLYRREELQGAFRFFVLSQEQPAASAIFDVQTRPFAPTLSAGQTLRFNLRANPTICKNGKRHDLLMEAKRQRKTQGDSQDIWSYQQQAALTWLARQGEQNGFTLRETSVDAYRQQQIHREKSRQMIQFSSVDYTGVLVLNDPVLFLQRLAQGYGKSRAFGCGMMMIKPGDDA
>NZ_CP019404.1|WP_000085110.1|3066733_3067480_-|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSQYLVFQLHGPMASWGVDAPGEVRHSHELPSRSALLGLLAAALGIRRDEEERLNAFNRHYQFLLCASGNPRWARDYHTVQMPKEVRKARYFSRREELQDPELLSALISRRDYYTDAWWMIAVSATPDAPYTLAQLQASLQHPVFPLYLGRKSHPLALPLAPQLLEGNAADVLREAYRWYQDQFNALKLPLPRLQNECWWEGEHDGLTASKILRRRDMPLSRQQWLFGERSVNQGPWLRKEDACISQE
>NZ_CP019404.1|WP_000206421.1|3067490_3068549_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRISSQSLKRAWRTSELFEQALAGNIGIRSGRIAREAAQILIESGIDAKKAVEYVKNIANYFGKVKAEKKPKDELTNAETGQLVHISPAEFEGVKALAHRLAEEKRAPKEEELALLRKDRMAVDIAMFGRMLAEKTDFNVEAACQVAHAFGVSETIVEDDFFTAVDDLRQASAEDAGAGHLGETGFGSALFYTYICINKDLLVKNLNGNEELANKTLRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTDQLNVAVKRITSLHKNMNKVYGQRTDTASFDVMNQQGSMEDVLDFICA
>NZ_CP019404.1|WP_000029526.1|3068562_3069111_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSIVQEDHKATLRKWHEDLQEKRGARASLRRSKTVNEACLSEGFHLLLMQTHSLWKNKADWHVTALAITAVLAAHIKFIDERQSFATQLGQKKSGDNPVMSKLRFSRLSAVKNPDELLRHLRRAVQLLDGSVNLISLADDIFRWCQEQDDLLNHHRRQQRPTEFLRIRWALEYYQAGDNEQD
>NZ_CP019404.1|WP_000368586.1|3069107_3070667_-|type-I-E-CRISPR-associated-protein-Cse1/CasA
MDNFSLLTTPWLPVRFKDGSTGKLAPVNLADENVVDIAATRADLQGAAWQFLLGLLQCSIAPKRYKNWEDIWFDGLHADALHKALAPLEHAFQFGAETPSFMQDFEELPDNKITIASLLPETPGIQTTELNTDHFIKRGVMECFCPHCAALALFSMQLNAPSGGQGYRTGLRGGGPLTTLIELQEYQGERQTPLWRKLWLNVMPQDAADLPLPVVYDAAVFPWLAATRTSEPPAHTITTDEQVNKLQAYWGMPRRIRLDFATIRQGVCNICGNNSDELLIQMLVKNYGVNYDRWRHPLTPHRLQIKNSKGFEPVITQPGGLLWRDWLGLSQENPTEKNTEYPAQVIKVFNARELRNIKVGLWGFGADFKKMKIRCWYEHHFPLLMTEGLIPDLRKATQTATRLLSLLRSALKEAWFANAKGARGDFSFIDIDFWNLTQGRFLNLIHDLENGHKPDERLNKWQRELWLFTRCYFDDHVFTNPYESSDLERIMKARKKYFTSSAEKQSAKAAKAKKQEAAE
>NZ_CP019404.1|WP_000029748.1|3070678_3073342_-|CRISPR-associated-helicase/endonuclease-Cas3
MSIYHYWGKSRRGETNGGDDYHLLCWHSLDVAAVGYWMVINNIYFIDHYLKKLGIQDKEQAAQFFAWILCWHDIGKFAHSFQQLYRHEALNIFNEPTRHYEKIAHTTLGYMLWNSWLSECPELFPPSSLSARKSKRVMALWMPVTTGHHGRPPEAIQELDHFRQQDKDAARDFLLRIKALFPLITLPEAWDEDEGIDQFQQLSWFISAAVVLADWTGSASRYFPRTAEKMPVDTYWQQALAKAQTAITLFPSAANVSAFTGIETLFPFIQHPTPLQQKALELDINVDGAQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLYFGLPTMATANAMFERMEKTWLALYQPDSRPSLILAHSARRLMDRFNQSIWSVTLSGTEEPDEAQPYSQGCVAWFADSNKKALLAEVGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAWMSRILEGLIERQASNGNATILLSATLSQQQRDKLVAAFSRGVRRSVQAPLLGHDDYPWLTQVTQTELISQRVDTRKEVERSVDIGWLHSEEACLERIGEAVEKGNCIAWIRNSVDDAIRIYRQLQLSKVVVTENLLLFHSRFAFYDRQRIESQTLNLFGKQSGAQRAGKVIIATQVIEQSLDIDCDEMISDLAPVDLLIQRAGRLQRHIRDRNGLVKKSGQDERETPVLRILAPEWDDAPRENWLSSAMRNSAYVYPDHGRMWLTQRILREQGTIRMPQSARLLIESVYGEDVNMPVGFAKTEQLQEGKFYCDRAFAGQMLLNFAPGYCAEISDSLPEKMSTRLAEESVTLWLAKIVDGVVTPYTSGEHAWEMSVLRVRQSWWNKHKDEFEKLDGEPLRKWCAQQHQDKDFATVIVVTDCAACGYSANEGLIGMMGE
>NZ_CP019404.1|WP_001145544.1|3073785_3074739_+|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGSKMTWHPELLQESISTLRKEVTGNAQIKTAVYEMMRPAEAPDHPLVEWQDSLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFSEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLV
>NZ_CP019404.1|WP_000080405.1|3074951_3075686_-|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVMALAETNAQLEKLSAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALKELNAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG

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Crispr_ID: NZ_CP019404_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP019404_3

3081042-3082351

TypeI-E

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRISPRCasFinder
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	PILER-CR

21 spacers

cas3,cas8e,cse2gr11,cas7

The CRISPR arrays of NZ_CP019404_3

>merge|NZ_CP019404|3|3081042-3082351|CRISPRCasFinder,CRT,PILER-CR
ACGGCTATCCTTGTTGGCGCGGGGAACACATCTTCATATTGCGTGACGCTGCCGATGAACGCGGTTTATCCCCGCTGGCGCGGGGAACACTCTTTATCAGCTAACCATTTCCAGAACTCGTCCGGTTTATCCCTGCTGGCGCGGGGAACACTATAATATGAATTAATTTTTGCGCATAACCTGCGGTTTATCCCCGCTGGCGCGGGGAACACGTGTTGTTTAACGGGATTCTTTAAAATGACCGCGGTTTATCCCCGCTGGCGCGGGGAACACTGCCGGGTCTATGCGAGAGATAATAAAGTAACCGGTTTATCCCCGCTGGCGCGGGGAACACATAATTAAGTAAATATTACCCTGTTAAAACGTCGGTTTATCCCCGCTGGCGCGGGGAACACACCGGACAAATCTTTTTTTTCCTGTTCCTGTTCGGTTTATCCCCGCTGGCGCGGGGAACACGGGCGGTCCCCGGCCTCAATACCGCGCTGACGCGGTTTATCCCCGCTGGCGCGGGGAACACGGAAACCGACTGCATACCCTGCGCAATGAAAGCGGTTTATCCCCGCTGGCGCGGGGAACACACCGGAATGCCATCCGATCCAACCTGACGGACCGGTTTATCCCCGCTGGCGCGGGGAACACTTGAGGTGCCGCTTGCCGTTCTTCTGTTTTTTCGGTTTATCCCCGCTGGCGCGGGGAACACGGGCACTATGAACGGATCGGCGCTGATGCCGGCGGTTTATCCCCGCTGGCGCGGGGAACACTAGCGAATAATGGTTGTGTTTAAGTGGATATTCGGTTTATCCCCGCTGGCGCGGGGAACACTTAACCCAAGCCACTAGCGGCGACAACACAATCGGTTTATCCCCGCTGGCGCGGGGAACACTTAACCCAAGCCACTAGCGGCGACAACACAATCGGTTTATCCCCGCTGGCGCGGGGAACACGGTAGTTACCCTCGTTCAGTTTTTTGAGCAACGGGTTTATCCCCGCTGGCGCGGGGAACACCGGATTTTTTAGAGGGAAAAGAACATGGCCCGCGGTTTATCCCCGCTGGCGCGGGGAACACTCTCCAGACTGATCCTCAACAACACACGCCGGCGGTTTATCCCCGCTGGCGCGGGGAACACAGTTCATTGGTTCTATATAAATCATATTCTGCCGGTTTATCCCCGCTGGCGCGGGGAACACATCCAGTAGACGCAGAAAATCAGCAGGAAGCACGGTTTATCCCCGCTGGCGCGGGGAACACGTACGAAATGTCCAGACAATCGAAATACGCAACGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP019404|3|3|3081042-3082351|CRISPRCasFinder
ACGGCTATCCTTGTTGGCGCGGGGAACAC	ATCTTCATATTGCGTGACGCTGCCGATGAACG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTTTATCAGCTAACCATTTCCAGAACTCGTC
CGGTTTATCCCTGCTGGCGCGGGGAACAC	TATAATATGAATTAATTTTTGCGCATAACCTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTGTTGTTTAACGGGATTCTTTAAAATGACCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGCCGGGTCTATGCGAGAGATAATAAAGTAAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATAATTAAGTAAATATTACCCTGTTAAAACGT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACCGGACAAATCTTTTTTTTCCTGTTCCTGTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGGCGGTCCCCGGCCTCAATACCGCGCTGACG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGAAACCGACTGCATACCCTGCGCAATGAAAG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACCGGAATGCCATCCGATCCAACCTGACGGAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTGAGGTGCCGCTTGCCGTTCTTCTGTTTTTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGGCACTATGAACGGATCGGCGCTGATGCCGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TAGCGAATAATGGTTGTGTTTAAGTGGATATT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTAACCCAAGCCACTAGCGGCGACAACACAAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTAACCCAAGCCACTAGCGGCGACAACACAAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGTAGTTACCCTCGTTCAGTTTTTTGAGCAAC
GGGTTTATCCCCGCTGGCGCGGGGAACAC	CGGATTTTTTAGAGGGAAAAGAACATGGCCCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTCCAGACTGATCCTCAACAACACACGCCGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGTTCATTGGTTCTATATAAATCATATTCTGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATCCAGTAGACGCAGAAAATCAGCAGGAAGCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTACGAAATGTCCAGACAATCGAAATACGCAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP019404|3|2|3081042-3082351|CRT
ACGGCTATCCTTGTTGGCGCGGGGAACAC	ATCTTCATATTGCGTGACGCTGCCGATGAACG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTTTATCAGCTAACCATTTCCAGAACTCGTC
CGGTTTATCCCTGCTGGCGCGGGGAACAC	TATAATATGAATTAATTTTTGCGCATAACCTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTGTTGTTTAACGGGATTCTTTAAAATGACCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGCCGGGTCTATGCGAGAGATAATAAAGTAAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATAATTAAGTAAATATTACCCTGTTAAAACGT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACCGGACAAATCTTTTTTTTCCTGTTCCTGTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGGCGGTCCCCGGCCTCAATACCGCGCTGACG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGAAACCGACTGCATACCCTGCGCAATGAAAG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACCGGAATGCCATCCGATCCAACCTGACGGAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTGAGGTGCCGCTTGCCGTTCTTCTGTTTTTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGGCACTATGAACGGATCGGCGCTGATGCCGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TAGCGAATAATGGTTGTGTTTAAGTGGATATT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTAACCCAAGCCACTAGCGGCGACAACACAAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTAACCCAAGCCACTAGCGGCGACAACACAAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGTAGTTACCCTCGTTCAGTTTTTTGAGCAAC
GGGTTTATCCCCGCTGGCGCGGGGAACAC	CGGATTTTTTAGAGGGAAAAGAACATGGCCCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTCCAGACTGATCCTCAACAACACACGCCGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGTTCATTGGTTCTATATAAATCATATTCTGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATCCAGTAGACGCAGAAAATCAGCAGGAAGCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTACGAAATGTCCAGACAATCGAAATACGCAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP019404|3|2|3081103-3082351|PILER-CR
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTTTATCAGCTAACCATTTCCAGAACTCGTC
CGGTTTATCCCTGCTGGCGCGGGGAACAC	TATAATATGAATTAATTTTTGCGCATAACCTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTGTTGTTTAACGGGATTCTTTAAAATGACCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGCCGGGTCTATGCGAGAGATAATAAAGTAAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATAATTAAGTAAATATTACCCTGTTAAAACGT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACCGGACAAATCTTTTTTTTCCTGTTCCTGTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGGCGGTCCCCGGCCTCAATACCGCGCTGACG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGAAACCGACTGCATACCCTGCGCAATGAAAG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACCGGAATGCCATCCGATCCAACCTGACGGAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTGAGGTGCCGCTTGCCGTTCTTCTGTTTTTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGGCACTATGAACGGATCGGCGCTGATGCCGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TAGCGAATAATGGTTGTGTTTAAGTGGATATT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTAACCCAAGCCACTAGCGGCGACAACACAAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTAACCCAAGCCACTAGCGGCGACAACACAAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGTAGTTACCCTCGTTCAGTTTTTTGAGCAAC
GGGTTTATCCCCGCTGGCGCGGGGAACAC	CGGATTTTTTAGAGGGAAAAGAACATGGCCCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTCCAGACTGATCCTCAACAACACACGCCGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGTTCATTGGTTCTATATAAATCATATTCTGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATCCAGTAGACGCAGAAAATCAGCAGGAAGCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTACGAAATGTCCAGACAATCGAAATACGCAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019404.1\|WP_000029748.1\|3070678_3073342_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP019404.1\|WP_001208002.1\|3080146_3080944_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|224158
NZ_CP019404.1\|WP_000210863.1\|3084835_3086473_-\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437
NZ_CP019404.1\|WP_000186400.1\|3092609_3095366_+\|two-component-sensor-histidine-kinase-BarA	unknown	unknown	gnl\|CDD\|236848
NZ_CP019404.1\|WP_000706493.1\|3095409_3096552_-\|glycerate-kinase	unknown	unknown	gnl\|CDD\|224840
NZ_CP019404.1\|WP_000036734.1\|3083454_3084753_-\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NZ_CP019404.1\|WP_000029526.1\|3068562_3069111_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
NZ_CP019404.1\|WP_000480218.1\|3088530_3088887_-\|type-II-toxin-antitoxin-system-ParD-family-antitoxin	unknown	unknown	gnl\|CDD\|226136
NZ_CP019404.1\|WP_000046856.1\|3091256_3092552_-\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|237291
NZ_CP019404.1\|WP_000210924.1\|3077473_3079273_-\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|182862
NZ_CP019404.1\|WP_000210449.1\|3086700_3087501_-\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
NZ_CP019404.1\|WP_000368586.1\|3069107_3070667_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
NZ_CP019404.1\|WP_000080405.1\|3074951_3075686_-\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NZ_CP019404.1\|WP_000226838.1\|3088970_3091205_-\|GTP-diphosphokinase	unknown	unknown	gnl\|CDD\|182797
NZ_CP019404.1\|WP_000108313.1\|3079696_3080059_+\|6-carboxytetrahydropterin-synthase-QueD	unknown	unknown	gnl\|CDD\|238264
NZ_CP019404.1\|WP_001199961.1\|3082647_3083319_-\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
NZ_CP019404.1\|WP_001290655.1\|3075761_3077474_-\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
NZ_CP019404.1\|WP_001532579.1\|3088268_3088565_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|226194
NZ_CP019404.1\|WP_001145544.1\|3073785_3074739_+\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
NZ_CP019404.1\|WP_000206421.1\|3067490_3068549_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|273843

Protein	Function_ID	Function_description	E-value
NZ_CP019404.1\|WP_000029748.1\|3070678_3073342_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	0
NZ_CP019404.1\|WP_001208002.1\|3080146_3080944_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|224158	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only].	5.39566e-102
NZ_CP019404.1\|WP_000210863.1\|3084835_3086473_-\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NZ_CP019404.1\|WP_000186400.1\|3092609_3095366_+\|two-component-sensor-histidine-kinase-BarA	gnl\|CDD\|236848	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional.	0
NZ_CP019404.1\|WP_000706493.1\|3095409_3096552_-\|glycerate-kinase	gnl\|CDD\|224840	COG1929, COG1929, Glycerate kinase [Carbohydrate transport and metabolism].	0
NZ_CP019404.1\|WP_000036734.1\|3083454_3084753_-\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NZ_CP019404.1\|WP_000029526.1\|3068562_3069111_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	8.80691e-33
NZ_CP019404.1\|WP_000480218.1\|3088530_3088887_-\|type-II-toxin-antitoxin-system-ParD-family-antitoxin	gnl\|CDD\|226136	COG3609, COG3609, Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain [Transcription].	6.12601e-20
NZ_CP019404.1\|WP_000046856.1\|3091256_3092552_-\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|237291	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD.	0
NZ_CP019404.1\|WP_000210924.1\|3077473_3079273_-\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
NZ_CP019404.1\|WP_000210449.1\|3086700_3087501_-\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	8.52469e-158
NZ_CP019404.1\|WP_000368586.1\|3069107_3070667_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	5.17383e-173
NZ_CP019404.1\|WP_000080405.1\|3074951_3075686_-\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	1.61797e-139
NZ_CP019404.1\|WP_000226838.1\|3088970_3091205_-\|GTP-diphosphokinase	gnl\|CDD\|182797	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional.	0
NZ_CP019404.1\|WP_000108313.1\|3079696_3080059_+\|6-carboxytetrahydropterin-synthase-QueD	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	2.78454e-58
NZ_CP019404.1\|WP_001199961.1\|3082647_3083319_-\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	1.43874e-155
NZ_CP019404.1\|WP_001290655.1\|3075761_3077474_-\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
NZ_CP019404.1\|WP_001532579.1\|3088268_3088565_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|226194	COG3668, ParE, Plasmid stabilization system protein [General function prediction only].	1.63617e-13
NZ_CP019404.1\|WP_001145544.1\|3073785_3074739_+\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
NZ_CP019404.1\|WP_000206421.1\|3067490_3068549_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	9.1402e-138

>NZ_CP019404.1|WP_001208002.1|3080146_3080944_-|MBL-fold-metallo-hydrolase
MALRIRVLLENHKGAGADKSLKARPGLSLLVEDESTSILFDTGPDGSFMQNALAMGIDLSDVSAVVLSHGHYDHCGGVPWLPDNSRIICHPDIARERYAAMTFLGITRKIKKLSCEVDYSRYRMMYTRGPLPIGENFIWSGEIPVVAPEAYGIFGGHDAEPDSILDEGVLIYQSTKGLVIITGCGHRGIANIVRHCQNITGIKRIYALVGGFHLRCASPFTLWRVRRFLQEQKPEKLCGCHCTGAWGRLWLPEITAPATGDVLRF
>NZ_CP019404.1|WP_000108313.1|3079696_3080059_+|6-carboxytetrahydropterin-synthase-QueD
MSTTLYKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFADLKAAFKPTYDRLDHYYLNDIPGLSNPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCVYRGE
>NZ_CP019404.1|WP_000210924.1|3077473_3079273_-|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit
MTTPAPLTGLLPLNPEQLARLQAATTDLTPEQLAWVSGYFWGVLNPRSGAVAVTPVPERKMPGVTLISASQTGNARRVAEALRDDLLAANLNVTLVNAGDYKFKQIASEKLLVIVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDVLKSRAPVAAPSQSVATGAVNDIHTSPYTKDAPLAATLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDELGVWYQNDPALVKELVELLWLKGDEPVTVDGKTLPLAEALEWHFELTVNTANIVENYATLTRSESLLPLVGDKAQLQHYAATTPIVDMVRFSPAQLDAQALIDLLRPLTPRLYSIASSQAETENEVHVTVGVVRYDIEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPQTPVIMIGPGTGIAPFRAFMQQRAAEGAEGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLNRIDLAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDARRMAADVEKALLEVIAEFGGMDLESADEYLSELRVERRYQRDVY
>NZ_CP019404.1|WP_001290655.1|3075761_3077474_-|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGATYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVDTFKEEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDKWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQKAKIETLARDHGLMNAVSAQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGNRIGTRIPRMYQENITEPDILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>NZ_CP019404.1|WP_000080405.1|3074951_3075686_-|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVMALAETNAQLEKLSAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALKELNAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>NZ_CP019404.1|WP_001145544.1|3073785_3074739_+|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGSKMTWHPELLQESISTLRKEVTGNAQIKTAVYEMMRPAEAPDHPLVEWQDSLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFSEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLV
>NZ_CP019404.1|WP_000029748.1|3070678_3073342_-|CRISPR-associated-helicase/endonuclease-Cas3
MSIYHYWGKSRRGETNGGDDYHLLCWHSLDVAAVGYWMVINNIYFIDHYLKKLGIQDKEQAAQFFAWILCWHDIGKFAHSFQQLYRHEALNIFNEPTRHYEKIAHTTLGYMLWNSWLSECPELFPPSSLSARKSKRVMALWMPVTTGHHGRPPEAIQELDHFRQQDKDAARDFLLRIKALFPLITLPEAWDEDEGIDQFQQLSWFISAAVVLADWTGSASRYFPRTAEKMPVDTYWQQALAKAQTAITLFPSAANVSAFTGIETLFPFIQHPTPLQQKALELDINVDGAQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLYFGLPTMATANAMFERMEKTWLALYQPDSRPSLILAHSARRLMDRFNQSIWSVTLSGTEEPDEAQPYSQGCVAWFADSNKKALLAEVGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAWMSRILEGLIERQASNGNATILLSATLSQQQRDKLVAAFSRGVRRSVQAPLLGHDDYPWLTQVTQTELISQRVDTRKEVERSVDIGWLHSEEACLERIGEAVEKGNCIAWIRNSVDDAIRIYRQLQLSKVVVTENLLLFHSRFAFYDRQRIESQTLNLFGKQSGAQRAGKVIIATQVIEQSLDIDCDEMISDLAPVDLLIQRAGRLQRHIRDRNGLVKKSGQDERETPVLRILAPEWDDAPRENWLSSAMRNSAYVYPDHGRMWLTQRILREQGTIRMPQSARLLIESVYGEDVNMPVGFAKTEQLQEGKFYCDRAFAGQMLLNFAPGYCAEISDSLPEKMSTRLAEESVTLWLAKIVDGVVTPYTSGEHAWEMSVLRVRQSWWNKHKDEFEKLDGEPLRKWCAQQHQDKDFATVIVVTDCAACGYSANEGLIGMMGE
>NZ_CP019404.1|WP_000368586.1|3069107_3070667_-|type-I-E-CRISPR-associated-protein-Cse1/CasA
MDNFSLLTTPWLPVRFKDGSTGKLAPVNLADENVVDIAATRADLQGAAWQFLLGLLQCSIAPKRYKNWEDIWFDGLHADALHKALAPLEHAFQFGAETPSFMQDFEELPDNKITIASLLPETPGIQTTELNTDHFIKRGVMECFCPHCAALALFSMQLNAPSGGQGYRTGLRGGGPLTTLIELQEYQGERQTPLWRKLWLNVMPQDAADLPLPVVYDAAVFPWLAATRTSEPPAHTITTDEQVNKLQAYWGMPRRIRLDFATIRQGVCNICGNNSDELLIQMLVKNYGVNYDRWRHPLTPHRLQIKNSKGFEPVITQPGGLLWRDWLGLSQENPTEKNTEYPAQVIKVFNARELRNIKVGLWGFGADFKKMKIRCWYEHHFPLLMTEGLIPDLRKATQTATRLLSLLRSALKEAWFANAKGARGDFSFIDIDFWNLTQGRFLNLIHDLENGHKPDERLNKWQRELWLFTRCYFDDHVFTNPYESSDLERIMKARKKYFTSSAEKQSAKAAKAKKQEAAE
>NZ_CP019404.1|WP_000029526.1|3068562_3069111_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSIVQEDHKATLRKWHEDLQEKRGARASLRRSKTVNEACLSEGFHLLLMQTHSLWKNKADWHVTALAITAVLAAHIKFIDERQSFATQLGQKKSGDNPVMSKLRFSRLSAVKNPDELLRHLRRAVQLLDGSVNLISLADDIFRWCQEQDDLLNHHRRQQRPTEFLRIRWALEYYQAGDNEQD
>NZ_CP019404.1|WP_000206421.1|3067490_3068549_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRISSQSLKRAWRTSELFEQALAGNIGIRSGRIAREAAQILIESGIDAKKAVEYVKNIANYFGKVKAEKKPKDELTNAETGQLVHISPAEFEGVKALAHRLAEEKRAPKEEELALLRKDRMAVDIAMFGRMLAEKTDFNVEAACQVAHAFGVSETIVEDDFFTAVDDLRQASAEDAGAGHLGETGFGSALFYTYICINKDLLVKNLNGNEELANKTLRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTDQLNVAVKRITSLHKNMNKVYGQRTDTASFDVMNQQGSMEDVLDFICA
>NZ_CP019404.1|WP_001199961.1|3082647_3083319_-|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILAKTKESDKWGAASSEDLLAVINRQGYTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA
>NZ_CP019404.1|WP_000036734.1|3083454_3084753_-|phosphopyruvate-hydratase
MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVGAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTENKSNFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKGKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>NZ_CP019404.1|WP_000210863.1|3084835_3086473_-|CTP-synthase-(glutamine-hydrolyzing)
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQLAVDIGREHALFMHLTLVPYLAAAGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISMKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIYEEANPAGEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVTVNIKLIDSQDVETRGVEILKDLDAILIPGGFGYRGVEGKIATARYARENNIPYLGICLGMQVALIEFARNVAGMDNANSTEFVPDCKYPVVALITEWRDEDGNVEVRSEKSDLGGTMRLGAQQCQLSDDSLVRQLYGASTIVERHRHRYEVNNMLLKQIEAAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAANEHQKRQAK
>NZ_CP019404.1|WP_000210449.1|3086700_3087501_-|nucleoside-triphosphate-pyrophosphohydrolase
MTTNHQIDRLLTLMQRLRDPENGCPWDKEQTFASIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFGELSADNSEEALVRWEQIKTEERAQKAQHSALDDIPRSFPALMRAQKIQKRCSNVGFDWTTLGPVVDKVYEEIDEVMFEARQAVVDQAKLEEEMGDLLFATVNMARHLGTKAELALQKANDKFERRFREVERIVAARGLEMTGVDLETMEEVWQEVKRQEIDL
>NZ_CP019404.1|WP_001532579.1|3088268_3088565_-|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MRMVKLTPKASEDLENIWHYGWQHFGEIQADRYINHLSEIFSIMSANNIGTPRPELGEYIYALPFKRHIIYFIQSVTEVIVIRILSQNQDAGKHVNWL
>NZ_CP019404.1|WP_000480218.1|3088530_3088887_-|type-II-toxin-antitoxin-system-ParD-family-antitoxin
MFLTYISFPVYSYVRFILTVEAVMARTMTVDLGDELREFIESLIESGDYRTQSEVIRESLRLLREKQAESRLQALRELLAEGLNSGEPQAWEKDAFLRKVKTGMIKPDENGKINAKGQ
>NZ_CP019404.1|WP_000226838.1|3088970_3091205_-|GTP-diphosphokinase
MVAVRSAHINKAGEFDPKKWIASLGISSQQSCERLAETWAYCLQQTQGHPDADLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSIVTLIHGVRDMAAIRQLNATHNDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKEAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPAEYKRIAKLLHERRLDREHYIEEFVGHLRAEMKNEGVQAEVYGRPKHIYSIWRKMQKKHLAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAHWKYKEGAASGGVRSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQIEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNIQAGRQILDDELAHLGISLKEAEKHLLPRYNFNELEELLAAIGGGDIRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKTYAPQNRRKDDGRVVVEGVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPERIVEAVWGESYSAGYSLVVRVQANDRSGLLRDITTILANEKVNVLGVASRSDIKQQIATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLHGG
>NZ_CP019404.1|WP_000046856.1|3091256_3092552_-|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MAQFYSAKRRVTTRQIITVKVNDLDSFGQGVARHNGKALFIPGLLPEESAEVIITEDKKQFARARVSRRLNDSPERETPRCPHFGVCGGCQQQHVSIALQQRSKSAALARLMKHEVNDIIAGAPWGYRRRARLSLNCPPDKPLQMGFRKAGSSDIVNVEQCPVLAPQLEALLPRIRACLASLHGTRHLGHVELVQAGSGTLMILRHTAPLSAADKEKLERFSHSEGLSLFLAPFSEILETVSGEAPWYDSHGLRLAFSPRDFIQVNEAVNQQMVARALEWLDVRAEDRVLDLFCGMGNFTLPLATRAASVVGVEGVPALVEKGRENAIRNGLHNVTFFHENLEEDVTKQPWAKNGFDKVLLDPARAGATGVMRHIIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLESMVLFERM
>NZ_CP019404.1|WP_000186400.1|3092609_3095366_+|two-component-sensor-histidine-kinase-BarA
MTNYSLRARMMILILAPTVLIGLLLSIFFVVHRYNDLQRQLEDAGASIIEPLAVSSEYGMNLQNRESIGQLISVLHRRHSDIVRAISVYDDHNRLFVTSNFHLDPSQMQLPAGAPFPRRLSVDRHGDIMILRTPIISESYSPDESAIADAKNTKNMLGYVALELDLKSVRLQQYKEIFISSVMMLFCIGIALIFGWRLMRDVTGPIRNMVNTVDRIRRGQLDSRVEGFMLGELDMLKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNVIGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNVIIDGPSTACLAGKRLAYVEPNATAAQCTLDLLSDTPVEVVYSPTFSALPLAHYDIMILSVPVTFREPLTMQHERLAKAASMTDFLLLALPCHAQINAEKLKQGGAAACLLKPLTSTRLLPALTEYCQLNHHPEPLLMDTSKITMTVMAVDDNPANLKLIGALLEDKVQHVELCDSGHQAVDRAKQMQFDLILMDIQMPDMDGIRACELIHQLPHQQQTPVIAVTAHAMAGQKEKLLSAGMNDYLAKPIEEEKLHNLLLRYKPGANVAARLMAPEPAEFIFNPNATLDWQLALRQAAGKPDLARDMLQMLIDFLPEVRNKIEEQLVGENPNGLVDLVHKLHGSCGYSGVPRMKNLCQLIEQQLRSGVHEEELEPEFLELLDEMDNVAREAKKILG
>NZ_CP019404.1|WP_000706493.1|3095409_3096552_-|glycerate-kinase
MKIVIAPDSYKESLSALEVATAIEQGFREIWPDADYLKLPLADGGEGTVEAMVEATVGRIVHVEVTGPLGHRVNAFYGLSGDARSAFIEMAAASGLEQVPPAQRDPLKTTSWGTGELIRHALDAGVEHIIIGIGGSATNDGGAGMVQALGARLRDAQGNDIAQGGIGLETLASIDISGLDKRLSACHIEVACDVTNPLTGKEGASAVFGPQKGATPEMIERLDTALTRYAHLIARDLHVDVLDLAGGGAAGGMGAALYAFCGAQLRRGIEIVTDALHLEACLADADLVITGEGRIDSQTIHGKVPIGVANIAKRYNKPVIGIAGSLTADVSVVHEHGLDAVFSVIYTICTLEDALKNASENVRMTARNVAATLKAGQQLR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP019404_1	1.1\|1295294\|42\|NZ_CP019404\|CRISPRCasFinder	1295294-1295335	42	MW013502	Salmonella virus L cI-40 13-am43, complete genome	31672-31713	0	1.0
NZ_CP019404_1	1.1\|1295294\|42\|NZ_CP019404\|CRISPRCasFinder	1295294-1295335	42	NC_004348	Enterobacteria phage ST64T, complete genome	14874-14915	0	1.0
NZ_CP019404_1	1.1\|1295294\|42\|NZ_CP019404\|CRISPRCasFinder	1295294-1295335	42	MW013503	Salmonella virus L cII-101, complete genome	31673-31714	0	1.0
NZ_CP019404_1	1.1\|1295294\|42\|NZ_CP019404\|CRISPRCasFinder	1295294-1295335	42	AY052766	Salmonella typhimurium bacteriophage ST64T, complete genome	14874-14915	0	1.0
NZ_CP019404_1	1.1\|1295294\|42\|NZ_CP019404\|CRISPRCasFinder	1295294-1295335	42	MF188997	Salmonella phage vB_SalP_PM43, complete genome	14769-14810	0	1.0
NZ_CP019404_1	1.1\|1295294\|42\|NZ_CP019404\|CRISPRCasFinder	1295294-1295335	42	NC_011802	Salmonella enterica bacteriophage SE1, complete genome	15034-15075	2	0.952
NZ_CP019404_1	1.1\|1295294\|42\|NZ_CP019404\|CRISPRCasFinder	1295294-1295335	42	CP051278	Salmonella phage ST-87, complete genome	25843-25884	2	0.952
NZ_CP019404_1	1.1\|1295294\|42\|NZ_CP019404\|CRISPRCasFinder	1295294-1295335	42	CP051288	Salmonella phage ST-29, complete genome	38685-38726	2	0.952
NZ_CP019404_1	1.1\|1295294\|42\|NZ_CP019404\|CRISPRCasFinder	1295294-1295335	42	CP051285	Salmonella phage ST-32, complete genome	31779-31820	2	0.952
NZ_CP019404_1	1.1\|1295294\|42\|NZ_CP019404\|CRISPRCasFinder	1295294-1295335	42	NC_014900	Salmonella phage ST160, complete genome	15102-15143	2	0.952
NZ_CP019404_1	1.1\|1295294\|42\|NZ_CP019404\|CRISPRCasFinder	1295294-1295335	42	CP051272	Salmonella phage SW-70, complete genome	35832-35873	2	0.952
NZ_CP019404_1	1.1\|1295294\|42\|NZ_CP019404\|CRISPRCasFinder	1295294-1295335	42	NC_016160	Escherichia phage HK75, complete genome	28592-28633	6	0.857
NZ_CP019404_1	1.1\|1295294\|42\|NZ_CP019404\|CRISPRCasFinder	1295294-1295335	42	NC_019705	Enterobacteria phage mEpX2, complete genome	29046-29087	6	0.857
NZ_CP019404_1	1.1\|1295294\|42\|NZ_CP019404\|CRISPRCasFinder	1295294-1295335	42	KY979108	Escherichia phage ECP1, complete genome	427-468	6	0.857
NZ_CP019404_1	1.1\|1295294\|42\|NZ_CP019404\|CRISPRCasFinder	1295294-1295335	42	NC_019719	Enterobacteria phage HK633, complete genome	31740-31781	6	0.857
NZ_CP019404_1	1.1\|1295294\|42\|NZ_CP019404\|CRISPRCasFinder	1295294-1295335	42	JF974339	Enterobacteria phage IME10, complete genome	9723-9764	6	0.857
NZ_CP019404_1	1.1\|1295294\|42\|NZ_CP019404\|CRISPRCasFinder	1295294-1295335	42	NC_005344	Enterobacteria phage Sf6, complete genome	28410-28451	6	0.857
NZ_CP019404_3	3.12\|3081742\|32\|NZ_CP019404\|CRISPRCasFinder,CRT,PILER-CR	3081742-3081773	32	NC_011366	Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG202, complete sequence	208454-208485	7	0.781
NZ_CP019404_3	3.12\|3081742\|32\|NZ_CP019404\|CRISPRCasFinder,CRT,PILER-CR	3081742-3081773	32	NC_017958	Tistrella mobilis KA081020-065 plasmid pTM3, complete sequence	449563-449594	7	0.781
NZ_CP019404_3	3.12\|3081742\|32\|NZ_CP019404\|CRISPRCasFinder,CRT,PILER-CR	3081742-3081773	32	NZ_CP035001	Rhizobium acidisoli strain FH23 plasmid pRapFH23c, complete sequence	167100-167131	7	0.781
NZ_CP019404_2	2.8\|3064613\|32\|NZ_CP019404\|CRISPRCasFinder,CRT	3064613-3064644	32	NC_016907	Gordonia polyisoprenivorans VH2 plasmid p174, complete sequence	64697-64728	8	0.75
NZ_CP019404_2	2.8\|3064613\|32\|NZ_CP019404\|CRISPRCasFinder,CRT	3064613-3064644	32	NZ_CP010858	Marinovum algicola DG 898 plasmid pMaD3	3485-3516	8	0.75
NZ_CP019404_2	2.10\|3064735\|32\|NZ_CP019404\|CRISPRCasFinder,CRT	3064735-3064766	32	NZ_CP032319	Hymenobacter oligotrophus strain sh-6 plasmid unnamed2, complete sequence	4010-4041	8	0.75
NZ_CP019404_2	2.18\|3064614\|33\|NZ_CP019404\|PILER-CR	3064614-3064646	33	NC_005262	Burkholderia cepacia phage Bcep22, complete genome	17205-17237	8	0.758
NZ_CP019404_2	2.20\|3064736\|33\|NZ_CP019404\|PILER-CR	3064736-3064768	33	NZ_CP032319	Hymenobacter oligotrophus strain sh-6 plasmid unnamed2, complete sequence	4010-4042	8	0.758
NZ_CP019404_3	3.17\|3082047\|32\|NZ_CP019404\|CRISPRCasFinder,CRT,PILER-CR	3082047-3082078	32	NZ_CP042626	Escherichia coli strain NCYU-26-73 plasmid pNCYU-26-73-11, complete sequence	1117-1148	8	0.75
NZ_CP019404_3	3.20\|3082230\|32\|NZ_CP019404\|CRISPRCasFinder,CRT,PILER-CR	3082230-3082261	32	NZ_CP015322	Mesorhizobium amorphae CCNWGS0123 plasmid pM0123d, complete sequence	824700-824731	8	0.75
NZ_CP019404_2	2.2\|3064247\|32\|NZ_CP019404\|CRISPRCasFinder,CRT	3064247-3064278	32	NZ_CP050096	Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b3, complete sequence	151458-151489	9	0.719
NZ_CP019404_2	2.2\|3064247\|32\|NZ_CP019404\|CRISPRCasFinder,CRT	3064247-3064278	32	NZ_CP050102	Rhizobium leguminosarum bv. trifolii strain 9B plasmid pRL9b2, complete sequence	132694-132725	9	0.719
NZ_CP019404_2	2.2\|3064247\|32\|NZ_CP019404\|CRISPRCasFinder,CRT	3064247-3064278	32	NZ_CP050107	Rhizobium leguminosarum bv. trifolii strain 4B plasmid pRL4b1, complete sequence	169943-169974	9	0.719
NZ_CP019404_2	2.2\|3064247\|32\|NZ_CP019404\|CRISPRCasFinder,CRT	3064247-3064278	32	NZ_CP050112	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b5, complete sequence	169942-169973	9	0.719
NZ_CP019404_2	2.2\|3064247\|32\|NZ_CP019404\|CRISPRCasFinder,CRT	3064247-3064278	32	NZ_CP048285	Rhizobium leguminosarum bv. viciae 248 plasmid pRle248a, complete sequence	30547-30578	9	0.719
NZ_CP019404_2	2.10\|3064735\|32\|NZ_CP019404\|CRISPRCasFinder,CRT	3064735-3064766	32	NZ_CP023408	Streptomyces fungicidicus strain TXX3120 plasmid p1, complete sequence	264920-264951	9	0.719
NZ_CP019404_3	3.7\|3081437\|32\|NZ_CP019404\|CRISPRCasFinder,CRT,PILER-CR	3081437-3081468	32	MN694645	Marine virus AFVG_250M761, complete genome	31050-31081	9	0.719
NZ_CP019404_3	3.12\|3081742\|32\|NZ_CP019404\|CRISPRCasFinder,CRT,PILER-CR	3081742-3081773	32	DQ674738	Aeromonas phage phiO18P, complete genome	15707-15738	9	0.719
NZ_CP019404_3	3.12\|3081742\|32\|NZ_CP019404\|CRISPRCasFinder,CRT,PILER-CR	3081742-3081773	32	NZ_CP031166	Euzebya sp. DY32-46 plasmid pEDY32-46I, complete sequence	380725-380756	9	0.719
NZ_CP019404_3	3.12\|3081742\|32\|NZ_CP019404\|CRISPRCasFinder,CRT,PILER-CR	3081742-3081773	32	NZ_CP022367	Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence	153785-153816	9	0.719
NZ_CP019404_3	3.19\|3082169\|32\|NZ_CP019404\|CRISPRCasFinder,CRT,PILER-CR	3082169-3082200	32	NC_011255	Borrelia recurrentis A1 plasmid pl35, complete sequence	27906-27937	9	0.719
NZ_CP019404_3	3.19\|3082169\|32\|NZ_CP019404\|CRISPRCasFinder,CRT,PILER-CR	3082169-3082200	32	NC_011249	Borrelia duttonii Ly plasmid pl36, complete sequence	31225-31256	9	0.719
NZ_CP019404_3	3.19\|3082169\|32\|NZ_CP019404\|CRISPRCasFinder,CRT,PILER-CR	3082169-3082200	32	NZ_CP032297	Rahnella aquatilis strain ZF7 plasmid pRAZF7, complete sequence	360899-360930	9	0.719
NZ_CP019404_3	3.19\|3082169\|32\|NZ_CP019404\|CRISPRCasFinder,CRT,PILER-CR	3082169-3082200	32	NZ_CP034837	Rahnella aquatilis strain KM05 plasmid pKM05, complete sequence	234035-234066	9	0.719
NZ_CP019404_3	3.21\|3082291\|32\|NZ_CP019404\|CRISPRCasFinder,CRT,PILER-CR	3082291-3082322	32	MT711528	Escherichia phage vB_EcoS_fTaEco03, complete genome	12261-12292	9	0.719
NZ_CP019404_3	3.21\|3082291\|32\|NZ_CP019404\|CRISPRCasFinder,CRT,PILER-CR	3082291-3082322	32	MT711525	Escherichia phage vB_EcoS_fKuEco01, complete genome	11823-11854	9	0.719
NZ_CP019404_3	3.21\|3082291\|32\|NZ_CP019404\|CRISPRCasFinder,CRT,PILER-CR	3082291-3082322	32	GU196278	Escherichia phage K1H, complete genome	12039-12070	9	0.719
NZ_CP019404_3	3.21\|3082291\|32\|NZ_CP019404\|CRISPRCasFinder,CRT,PILER-CR	3082291-3082322	32	NC_027993	Escherichia phage K1G, complete genome	13924-13955	9	0.719
NZ_CP019404_3	3.21\|3082291\|32\|NZ_CP019404\|CRISPRCasFinder,CRT,PILER-CR	3082291-3082322	32	MT711527	Escherichia phage vB_EcoS_fTaEco01, complete genome	11822-11853	9	0.719
NZ_CP019404_2	2.5\|3064430\|32\|NZ_CP019404\|CRISPRCasFinder,CRT	3064430-3064461	32	NC_019957	Mycobacterium sp. JS623 plasmid pMYCSM01, complete sequence	63429-63460	10	0.688
NZ_CP019404_2	2.8\|3064613\|32\|NZ_CP019404\|CRISPRCasFinder,CRT	3064613-3064644	32	NC_005262	Burkholderia cepacia phage Bcep22, complete genome	17206-17237	10	0.688
NZ_CP019404_2	2.8\|3064613\|32\|NZ_CP019404\|CRISPRCasFinder,CRT	3064613-3064644	32	NZ_CP015746	Shinella sp. HZN7 plasmid pShin-10, complete sequence	61466-61497	10	0.688
NZ_CP019404_2	2.8\|3064613\|32\|NZ_CP019404\|CRISPRCasFinder,CRT	3064613-3064644	32	NZ_CP019446	Kosakonia cowanii JCM 10956 = DSM 18146 strain 888-76 plasmid p888-76-1, complete sequence	17753-17784	10	0.688
NZ_CP019404_2	2.8\|3064613\|32\|NZ_CP019404\|CRISPRCasFinder,CRT	3064613-3064644	32	NZ_CP032923	Agrobacterium tumefaciens strain 1D1108 plasmid pAt1D1108a, complete sequence	101360-101391	10	0.688
NZ_CP019404_2	2.9\|3064674\|32\|NZ_CP019404\|CRISPRCasFinder,CRT	3064674-3064705	32	CP009871	Pantoea sp. PSNIH2 plasmid pPSP-cd6, complete sequence	51629-51660	10	0.688
NZ_CP019404_2	2.10\|3064735\|32\|NZ_CP019404\|CRISPRCasFinder,CRT	3064735-3064766	32	NZ_CP006373	Aureimonas sp. AU20 plasmid pAU20f, complete sequence	26111-26142	10	0.688
NZ_CP019404_3	3.1\|3081071\|32\|NZ_CP019404\|CRISPRCasFinder,CRT	3081071-3081102	32	NZ_CP054615	Azospirillum oryzae strain KACC 14407 plasmid unnamed1, complete sequence	146919-146950	10	0.688
NZ_CP019404_3	3.6\|3081376\|32\|NZ_CP019404\|CRISPRCasFinder,CRT,PILER-CR	3081376-3081407	32	KF751793	Campylobacter phage CJIE4-1, complete genome	18118-18149	10	0.688
NZ_CP019404_3	3.17\|3082047\|32\|NZ_CP019404\|CRISPRCasFinder,CRT,PILER-CR	3082047-3082078	32	LR026976	Bacillus pumilus isolate 1 genome assembly, plasmid: p576	23626-23657	10	0.688
NZ_CP019404_3	3.17\|3082047\|32\|NZ_CP019404\|CRISPRCasFinder,CRT,PILER-CR	3082047-3082078	32	NC_022882	Bacillus thuringiensis YBT-1518 plasmid pBMB0233, complete sequence	54509-54540	10	0.688
NZ_CP019404_2	2.1\|3064186\|32\|NZ_CP019404\|CRISPRCasFinder,CRT	3064186-3064217	32	CP054927	Streptomyces fulvissimus strain NA06532 plasmid unnamed1, complete sequence	47822-47853	11	0.656
NZ_CP019404_3	3.12\|3081742\|32\|NZ_CP019404\|CRISPRCasFinder,CRT,PILER-CR	3081742-3081773	32	NZ_CP054036	Rhizobium sp. JKLM13E plasmid pPR13E05, complete sequence	234768-234799	11	0.656
NZ_CP019404_3	3.12\|3081742\|32\|NZ_CP019404\|CRISPRCasFinder,CRT,PILER-CR	3081742-3081773	32	NZ_CP022568	Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK04, complete sequence	299431-299462	11	0.656

1. spacer 1.1|1295294|42|NZ_CP019404|CRISPRCasFinder matches to MW013502 (Salmonella virus L cI-40 13-am43, complete genome) position: , mismatch: 0, identity: 1.0

gtccaacgcaaacaccagtaatgacgcggctcacagcaaatg	CRISPR spacer
gtccaacgcaaacaccagtaatgacgcggctcacagcaaatg	Protospacer
******************************************

2. spacer 1.1|1295294|42|NZ_CP019404|CRISPRCasFinder matches to NC_004348 (Enterobacteria phage ST64T, complete genome) position: , mismatch: 0, identity: 1.0

gtccaacgcaaacaccagtaatgacgcggctcacagcaaatg	CRISPR spacer
gtccaacgcaaacaccagtaatgacgcggctcacagcaaatg	Protospacer
******************************************

3. spacer 1.1|1295294|42|NZ_CP019404|CRISPRCasFinder matches to MW013503 (Salmonella virus L cII-101, complete genome) position: , mismatch: 0, identity: 1.0

gtccaacgcaaacaccagtaatgacgcggctcacagcaaatg	CRISPR spacer
gtccaacgcaaacaccagtaatgacgcggctcacagcaaatg	Protospacer
******************************************

4. spacer 1.1|1295294|42|NZ_CP019404|CRISPRCasFinder matches to AY052766 (Salmonella typhimurium bacteriophage ST64T, complete genome) position: , mismatch: 0, identity: 1.0

gtccaacgcaaacaccagtaatgacgcggctcacagcaaatg	CRISPR spacer
gtccaacgcaaacaccagtaatgacgcggctcacagcaaatg	Protospacer
******************************************

5. spacer 1.1|1295294|42|NZ_CP019404|CRISPRCasFinder matches to MF188997 (Salmonella phage vB_SalP_PM43, complete genome) position: , mismatch: 0, identity: 1.0

gtccaacgcaaacaccagtaatgacgcggctcacagcaaatg	CRISPR spacer
gtccaacgcaaacaccagtaatgacgcggctcacagcaaatg	Protospacer
******************************************

6. spacer 1.1|1295294|42|NZ_CP019404|CRISPRCasFinder matches to NC_011802 (Salmonella enterica bacteriophage SE1, complete genome) position: , mismatch: 2, identity: 0.952

gtccaacgcaaacaccagtaatgacgcggctcacagcaaatg	CRISPR spacer
gtccaacgcaaacaccagtaatgacgcggatcacagcgaatg	Protospacer
***************************** *******.****

7. spacer 1.1|1295294|42|NZ_CP019404|CRISPRCasFinder matches to CP051278 (Salmonella phage ST-87, complete genome) position: , mismatch: 2, identity: 0.952

gtccaacgcaaacaccagtaatgacgcggctcacagcaaatg	CRISPR spacer
gtccaacgcaaacaccagtaatgacgcggatcacagcgaatg	Protospacer
***************************** *******.****

8. spacer 1.1|1295294|42|NZ_CP019404|CRISPRCasFinder matches to CP051288 (Salmonella phage ST-29, complete genome) position: , mismatch: 2, identity: 0.952

gtccaacgcaaacaccagtaatgacgcggctcacagcaaatg	CRISPR spacer
gtccaacgcaaacaccagtaatgacgcggatcacagcgaatg	Protospacer
***************************** *******.****

9. spacer 1.1|1295294|42|NZ_CP019404|CRISPRCasFinder matches to CP051285 (Salmonella phage ST-32, complete genome) position: , mismatch: 2, identity: 0.952

gtccaacgcaaacaccagtaatgacgcggctcacagcaaatg	CRISPR spacer
gtccaacgcaaacaccagtaatgacgcggatcacagcgaatg	Protospacer
***************************** *******.****

10. spacer 1.1|1295294|42|NZ_CP019404|CRISPRCasFinder matches to NC_014900 (Salmonella phage ST160, complete genome) position: , mismatch: 2, identity: 0.952

gtccaacgcaaacaccagtaatgacgcggctcacagcaaatg	CRISPR spacer
gtccaacgcaaacaccagtaatgacgcggatcacagcgaatg	Protospacer
***************************** *******.****

11. spacer 1.1|1295294|42|NZ_CP019404|CRISPRCasFinder matches to CP051272 (Salmonella phage SW-70, complete genome) position: , mismatch: 2, identity: 0.952

gtccaacgcaaacaccagtaatgacgcggctcacagcaaatg	CRISPR spacer
gtccaacgcaaacaccagtaatgacgcggatcacagcgaatg	Protospacer
***************************** *******.****

12. spacer 1.1|1295294|42|NZ_CP019404|CRISPRCasFinder matches to NC_016160 (Escherichia phage HK75, complete genome) position: , mismatch: 6, identity: 0.857

gtccaacgcaaacaccagtaatgacgcggctcacagcaaatg	CRISPR spacer
gtccaacgcaaacaccagtaatggcgcggctctcagcggaga	Protospacer
***********************.******** ****..* .

13. spacer 1.1|1295294|42|NZ_CP019404|CRISPRCasFinder matches to NC_019705 (Enterobacteria phage mEpX2, complete genome) position: , mismatch: 6, identity: 0.857

gtccaacgcaaacaccagtaatgacgcggctcacagcaaatg	CRISPR spacer
gtccaacgcaaacaccagtaatggcgcggctctcagcggaga	Protospacer
***********************.******** ****..* .

14. spacer 1.1|1295294|42|NZ_CP019404|CRISPRCasFinder matches to KY979108 (Escherichia phage ECP1, complete genome) position: , mismatch: 6, identity: 0.857

gtccaacgcaaacaccagtaatgacgcggctcacagcaaatg	CRISPR spacer
gtccaacgcaaacaccagtaatggcgcggctctcagcggaga	Protospacer
***********************.******** ****..* .

15. spacer 1.1|1295294|42|NZ_CP019404|CRISPRCasFinder matches to NC_019719 (Enterobacteria phage HK633, complete genome) position: , mismatch: 6, identity: 0.857

gtccaacgcaaacaccagtaatgacgcggctcacagcaaatg	CRISPR spacer
gtccaacgcaaacaccagtaatggcgcggctctcagcggaga	Protospacer
***********************.******** ****..* .

16. spacer 1.1|1295294|42|NZ_CP019404|CRISPRCasFinder matches to JF974339 (Enterobacteria phage IME10, complete genome) position: , mismatch: 6, identity: 0.857

gtccaacgcaaacaccagtaatgacgcggctcacagcaaatg	CRISPR spacer
gtccaacgcaaacaccagtaatggcgcggctctcagcggaga	Protospacer
***********************.******** ****..* .

17. spacer 1.1|1295294|42|NZ_CP019404|CRISPRCasFinder matches to NC_005344 (Enterobacteria phage Sf6, complete genome) position: , mismatch: 6, identity: 0.857

gtccaacgcaaacaccagtaatgacgcggctcacagcaaatg	CRISPR spacer
gtccaacgcaaacaccagtaatggcgcggctctcagcggaga	Protospacer
***********************.******** ****..* .

18. spacer 3.12|3081742|32|NZ_CP019404|CRISPRCasFinder,CRT,PILER-CR matches to NC_011366 (Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG202, complete sequence) position: , mismatch: 7, identity: 0.781

---gggcactatgaacggatcggcgctgatgccgg	CRISPR spacer
ttcgagc---atgaccggatcggcgctggtgccga	Protospacer
   *.**   **** *************.*****.

19. spacer 3.12|3081742|32|NZ_CP019404|CRISPRCasFinder,CRT,PILER-CR matches to NC_017958 (Tistrella mobilis KA081020-065 plasmid pTM3, complete sequence) position: , mismatch: 7, identity: 0.781

gggcactatgaacggatcggcgctgatgccgg	CRISPR spacer
ggcggcggtgaaaggatcggcggtgatgccgg	Protospacer
**  .* .**** ********* *********

20. spacer 3.12|3081742|32|NZ_CP019404|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP035001 (Rhizobium acidisoli strain FH23 plasmid pRapFH23c, complete sequence) position: , mismatch: 7, identity: 0.781

---gggcactatgaacggatcggcgctgatgccgg	CRISPR spacer
ttcgagc---atgaccggatcggcgctggtgccga	Protospacer
   *.**   **** *************.*****.

21. spacer 2.8|3064613|32|NZ_CP019404|CRISPRCasFinder,CRT matches to NC_016907 (Gordonia polyisoprenivorans VH2 plasmid p174, complete sequence) position: , mismatch: 8, identity: 0.75

gcgtagcgttcagcgaggcggttatcaccccc	CRISPR spacer
gcaagaccttccgcgaggcggtgatcaccccg	Protospacer
**. ..* *** ********** ********

22. spacer 2.8|3064613|32|NZ_CP019404|CRISPRCasFinder,CRT matches to NZ_CP010858 (Marinovum algicola DG 898 plasmid pMaD3) position: , mismatch: 8, identity: 0.75

gcgtagcgttcagcgaggcggttatcaccccc	CRISPR spacer
gcaggccgttcagcgagccggtgatcaccacg	Protospacer
**. . *********** **** ****** *

23. spacer 2.10|3064735|32|NZ_CP019404|CRISPRCasFinder,CRT matches to NZ_CP032319 (Hymenobacter oligotrophus strain sh-6 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.75

aggctacccaacgcccccacgcta--caggctgg	CRISPR spacer
aggctacccaacgctaccacgctggccacacc--	Protospacer
**************. *******.  ** .*.

24. spacer 2.18|3064614|33|NZ_CP019404|PILER-CR matches to NC_005262 (Burkholderia cepacia phage Bcep22, complete genome) position: , mismatch: 8, identity: 0.758

cgcg-tagcgttcagcgaggcggttatcaccccc	CRISPR spacer
-gcgaccgcgttcagcaaggccgttatcaccgag	Protospacer
 *** . *********.**** *********

25. spacer 2.20|3064736|33|NZ_CP019404|PILER-CR matches to NZ_CP032319 (Hymenobacter oligotrophus strain sh-6 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.758

caggctacccaacgcccccacgcta--caggctgg	CRISPR spacer
caggctacccaacgctaccacgctggccacacc--	Protospacer
***************. *******.  ** .*.

26. spacer 3.17|3082047|32|NZ_CP019404|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP042626 (Escherichia coli strain NCYU-26-73 plasmid pNCYU-26-73-11, complete sequence) position: , mismatch: 8, identity: 0.75

cggattttttagagggaaaagaacatggcccg	CRISPR spacer
gggattttttagagggaaaaaatcatgtttat	Protospacer
 *******************.* **** ..

27. spacer 3.20|3082230|32|NZ_CP019404|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015322 (Mesorhizobium amorphae CCNWGS0123 plasmid pM0123d, complete sequence) position: , mismatch: 8, identity: 0.75

atccagtagacgcagaaaatcagcaggaagca	CRISPR spacer
acatagtagacgaagaaaatctgcaggatgag	Protospacer
*. .******** ******** ****** * .

28. spacer 2.2|3064247|32|NZ_CP019404|CRISPRCasFinder,CRT matches to NZ_CP050096 (Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b3, complete sequence) position: , mismatch: 9, identity: 0.719

ttccggagtgactggtatcgcgacg---tattcaa	CRISPR spacer
ggcctgactgactggtatcgcgacggcacact---	Protospacer
  ** ** *****************   .*.*

29. spacer 2.2|3064247|32|NZ_CP019404|CRISPRCasFinder,CRT matches to NZ_CP050102 (Rhizobium leguminosarum bv. trifolii strain 9B plasmid pRL9b2, complete sequence) position: , mismatch: 9, identity: 0.719

ttccggagtgactggtatcgcgacg---tattcaa	CRISPR spacer
ggcctgactgactggtatcgcgacggcacact---	Protospacer
  ** ** *****************   .*.*

30. spacer 2.2|3064247|32|NZ_CP019404|CRISPRCasFinder,CRT matches to NZ_CP050107 (Rhizobium leguminosarum bv. trifolii strain 4B plasmid pRL4b1, complete sequence) position: , mismatch: 9, identity: 0.719

ttccggagtgactggtatcgcgacg---tattcaa	CRISPR spacer
ggcctgactgactggtatcgcgacggcacact---	Protospacer
  ** ** *****************   .*.*

31. spacer 2.2|3064247|32|NZ_CP019404|CRISPRCasFinder,CRT matches to NZ_CP050112 (Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b5, complete sequence) position: , mismatch: 9, identity: 0.719

ttccggagtgactggtatcgcgacg---tattcaa	CRISPR spacer
ggcctgactgactggtatcgcgacggcacact---	Protospacer
  ** ** *****************   .*.*

32. spacer 2.2|3064247|32|NZ_CP019404|CRISPRCasFinder,CRT matches to NZ_CP048285 (Rhizobium leguminosarum bv. viciae 248 plasmid pRle248a, complete sequence) position: , mismatch: 9, identity: 0.719

ttccggagtgactggtatcgcgacg---tattcaa	CRISPR spacer
ggcctgactgactggtatcgcgacggcacact---	Protospacer
  ** ** *****************   .*.*

33. spacer 2.10|3064735|32|NZ_CP019404|CRISPRCasFinder,CRT matches to NZ_CP023408 (Streptomyces fungicidicus strain TXX3120 plasmid p1, complete sequence) position: , mismatch: 9, identity: 0.719

aggctacccaacgcccccacgctacaggctgg	CRISPR spacer
ccgggacccaacgcccctccgctacagggccg	Protospacer
  *  ************. ********* . *

34. spacer 3.7|3081437|32|NZ_CP019404|CRISPRCasFinder,CRT,PILER-CR matches to MN694645 (Marine virus AFVG_250M761, complete genome) position: , mismatch: 9, identity: 0.719

accggacaaatcttttttttcctgttcctgtt	CRISPR spacer
gcatcattaatcctttttttcctgttactgta	Protospacer
.*   *. ****.************* ****

35. spacer 3.12|3081742|32|NZ_CP019404|CRISPRCasFinder,CRT,PILER-CR matches to DQ674738 (Aeromonas phage phiO18P, complete genome) position: , mismatch: 9, identity: 0.719

gggcactatgaacggatcggcgctgatgccgg	CRISPR spacer
cagtttgctgaactgctcggcgctgatgccgg	Protospacer
 .*. .  ***** * ****************

36. spacer 3.12|3081742|32|NZ_CP019404|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031166 (Euzebya sp. DY32-46 plasmid pEDY32-46I, complete sequence) position: , mismatch: 9, identity: 0.719

gggcactatgaacggatcggcgctgatgccgg	CRISPR spacer
cctgacggtgaaccggtcggcgctgatgccgc	Protospacer
    ** .***** *.***************

37. spacer 3.12|3081742|32|NZ_CP019404|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022367 (Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence) position: , mismatch: 9, identity: 0.719

gggcactatgaacggatcggcgctgatgccgg	CRISPR spacer
cagggcgtcgaactgatcggcgctcatgccgg	Protospacer
 .* .*  .**** ********** *******

38. spacer 3.19|3082169|32|NZ_CP019404|CRISPRCasFinder,CRT,PILER-CR matches to NC_011255 (Borrelia recurrentis A1 plasmid pl35, complete sequence) position: , mismatch: 9, identity: 0.719

agttcattggttctatataaatcatattctgc	CRISPR spacer
tataaattatttctatataaatcatatttttt	Protospacer
 .*  ***. ******************.* .

39. spacer 3.19|3082169|32|NZ_CP019404|CRISPRCasFinder,CRT,PILER-CR matches to NC_011249 (Borrelia duttonii Ly plasmid pl36, complete sequence) position: , mismatch: 9, identity: 0.719

agttcattggttctatataaatcatattctgc	CRISPR spacer
tataaattatttctatataaatcatatttttt	Protospacer
 .*  ***. ******************.* .

40. spacer 3.19|3082169|32|NZ_CP019404|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032297 (Rahnella aquatilis strain ZF7 plasmid pRAZF7, complete sequence) position: , mismatch: 9, identity: 0.719

agttcattggttctatataaatcatattctgc	CRISPR spacer
ggattattggttcaatataaatcctattggtg	Protospacer
.* *.******** ********* ****

41. spacer 3.19|3082169|32|NZ_CP019404|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP034837 (Rahnella aquatilis strain KM05 plasmid pKM05, complete sequence) position: , mismatch: 9, identity: 0.719

agttcattggttctatataaatcatattctgc	CRISPR spacer
ggattattggttcaatataaatcctattggtg	Protospacer
.* *.******** ********* ****

42. spacer 3.21|3082291|32|NZ_CP019404|CRISPRCasFinder,CRT,PILER-CR matches to MT711528 (Escherichia phage vB_EcoS_fTaEco03, complete genome) position: , mismatch: 9, identity: 0.719

gtacga-aatgtccagacaatcgaaatacgcaa	CRISPR spacer
-tgtaacggcgtccagactatcgaaatgcgcaa	Protospacer
 *...* ...******** ********.*****

43. spacer 3.21|3082291|32|NZ_CP019404|CRISPRCasFinder,CRT,PILER-CR matches to MT711525 (Escherichia phage vB_EcoS_fKuEco01, complete genome) position: , mismatch: 9, identity: 0.719

gtacga-aatgtccagacaatcgaaatacgcaa	CRISPR spacer
-tgtaacggcgtccagactatcgaaatgcgcaa	Protospacer
 *...* ...******** ********.*****

44. spacer 3.21|3082291|32|NZ_CP019404|CRISPRCasFinder,CRT,PILER-CR matches to GU196278 (Escherichia phage K1H, complete genome) position: , mismatch: 9, identity: 0.719

gtacga-aatgtccagacaatcgaaatacgcaa	CRISPR spacer
-tgtaacggcgtccagactatcgaaatgcgcaa	Protospacer
 *...* ...******** ********.*****

45. spacer 3.21|3082291|32|NZ_CP019404|CRISPRCasFinder,CRT,PILER-CR matches to NC_027993 (Escherichia phage K1G, complete genome) position: , mismatch: 9, identity: 0.719

gtacga-aatgtccagacaatcgaaatacgcaa	CRISPR spacer
-tgtaacggcgtccagactatcgaaatgcgcaa	Protospacer
 *...* ...******** ********.*****

46. spacer 3.21|3082291|32|NZ_CP019404|CRISPRCasFinder,CRT,PILER-CR matches to MT711527 (Escherichia phage vB_EcoS_fTaEco01, complete genome) position: , mismatch: 9, identity: 0.719

gtacga-aatgtccagacaatcgaaatacgcaa	CRISPR spacer
-tgtaacggcgtccagactatcgaaatgcgcaa	Protospacer
 *...* ...******** ********.*****

47. spacer 2.5|3064430|32|NZ_CP019404|CRISPRCasFinder,CRT matches to NC_019957 (Mycobacterium sp. JS623 plasmid pMYCSM01, complete sequence) position: , mismatch: 10, identity: 0.688

tcaccgccacgcgggccgctattgagcgaatg	CRISPR spacer
ccgttgccgcgcggtccgctattgagcgcgct	Protospacer
.*...***.***** ************* ..

48. spacer 2.8|3064613|32|NZ_CP019404|CRISPRCasFinder,CRT matches to NC_005262 (Burkholderia cepacia phage Bcep22, complete genome) position: , mismatch: 10, identity: 0.688

gcgtagcgttcagcgaggcggttatcaccccc	CRISPR spacer
cgaccgcgttcagcaaggccgttatcaccgag	Protospacer
  .. *********.**** *********

49. spacer 2.8|3064613|32|NZ_CP019404|CRISPRCasFinder,CRT matches to NZ_CP015746 (Shinella sp. HZN7 plasmid pShin-10, complete sequence) position: , mismatch: 10, identity: 0.688

gcgtagcgttcagcgaggcggttatcaccccc	CRISPR spacer
gcgtagcgttcagcctggcggttcaagggctg	Protospacer
**************  *******   .  *.

50. spacer 2.8|3064613|32|NZ_CP019404|CRISPRCasFinder,CRT matches to NZ_CP019446 (Kosakonia cowanii JCM 10956 = DSM 18146 strain 888-76 plasmid p888-76-1, complete sequence) position: , mismatch: 10, identity: 0.688

gcgtagcgttcagcgaggcggttatcaccccc	CRISPR spacer
tgaaggcgttcagcgatgtggttatcacatca	Protospacer
  . .*********** *.********* .*

51. spacer 2.8|3064613|32|NZ_CP019404|CRISPRCasFinder,CRT matches to NZ_CP032923 (Agrobacterium tumefaciens strain 1D1108 plasmid pAt1D1108a, complete sequence) position: , mismatch: 10, identity: 0.688

gcgtagcgttcagcgaggcggttatcaccccc	CRISPR spacer
gcgtagcgtacagcgatgcggttgccggtgaa	Protospacer
********* ****** ******..*. .

52. spacer 2.9|3064674|32|NZ_CP019404|CRISPRCasFinder,CRT matches to CP009871 (Pantoea sp. PSNIH2 plasmid pPSP-cd6, complete sequence) position: , mismatch: 10, identity: 0.688

atttgaacgcacatcaacatgcgtaaaagatg	CRISPR spacer
ccggcaacgcgcagcaacatgcgtaaaatcgg	Protospacer
 .   *****.** **************   *

53. spacer 2.10|3064735|32|NZ_CP019404|CRISPRCasFinder,CRT matches to NZ_CP006373 (Aureimonas sp. AU20 plasmid pAU20f, complete sequence) position: , mismatch: 10, identity: 0.688

aggctacccaacgcccccacgctacaggctgg	CRISPR spacer
tggcgacccaacgccccgacgctaagacgttc	Protospacer
 *** ************ ****** ..  *

54. spacer 3.1|3081071|32|NZ_CP019404|CRISPRCasFinder,CRT matches to NZ_CP054615 (Azospirillum oryzae strain KACC 14407 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

atcttcatattgcgtgacgctgccgatgaacg	CRISPR spacer
tgccggatatggcgtgacgatgccgatgatgt	Protospacer
  *.  **** ******** *********

55. spacer 3.6|3081376|32|NZ_CP019404|CRISPRCasFinder,CRT,PILER-CR matches to KF751793 (Campylobacter phage CJIE4-1, complete genome) position: , mismatch: 10, identity: 0.688

ataattaagtaaatattaccctgttaaaacgt	CRISPR spacer
tgctttaagtaaatattacactgctaatgcaa	Protospacer
    *************** ***.*** .*.

56. spacer 3.17|3082047|32|NZ_CP019404|CRISPRCasFinder,CRT,PILER-CR matches to LR026976 (Bacillus pumilus isolate 1 genome assembly, plasmid: p576) position: , mismatch: 10, identity: 0.688

cggattttttagagggaaaagaacatggcccg	CRISPR spacer
gagattttttagagtgaaaagatcaaaaagag	Protospacer
 .************ ******* ** ..   *

57. spacer 3.17|3082047|32|NZ_CP019404|CRISPRCasFinder,CRT,PILER-CR matches to NC_022882 (Bacillus thuringiensis YBT-1518 plasmid pBMB0233, complete sequence) position: , mismatch: 10, identity: 0.688

cggattttttagagggaaaagaacatggcccg	CRISPR spacer
tggattttttacagcgaaaagaactcgtgttt	Protospacer
.********** ** ********* .*  ..

58. spacer 2.1|3064186|32|NZ_CP019404|CRISPRCasFinder,CRT matches to CP054927 (Streptomyces fulvissimus strain NA06532 plasmid unnamed1, complete sequence) position: , mismatch: 11, identity: 0.656

ttttcagcccttgccgactgcggaacgcccct	CRISPR spacer
cgccgcacccttgccgactgcgggatgcccga	Protospacer
. ..  .****************.*.****

59. spacer 3.12|3081742|32|NZ_CP019404|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP054036 (Rhizobium sp. JKLM13E plasmid pPR13E05, complete sequence) position: , mismatch: 11, identity: 0.656

gggcactatgaacggatcggcgctgatgccgg	CRISPR spacer
atagactaggagcggatcggcgctgatcggaa	Protospacer
. . **** **.***************   ..

60. spacer 3.12|3081742|32|NZ_CP019404|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022568 (Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK04, complete sequence) position: , mismatch: 11, identity: 0.656

gggcactatgaacggatcggcgctgatgccgg	CRISPR spacer
atagactaggagcggatcggcgctgatcggaa	Protospacer
. . **** **.***************   ..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

978560 : 985873

Dickeya_phage(16.67%)

protease

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001201753.1\|978560_979679_+	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	8.1e-09	39.8
WP_000125877.1\|979675_981622_+	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	2.0e-39	43.1
WP_000447499.1\|981751_981973_-	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	9.3e-18	64.2
WP_000520789.1\|982296_982617_+\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	4.5e-13	45.7
WP_000934064.1\|982647_984924_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	6.2e-165	42.3
WP_001117984.1\|985136_985334_-	hypothetical protein	NA	NA	NA	NA
WP_001531374.1\|985495_985873_-	hypothetical protein	A0A077KET4	Ralstonia_phage	1.7e-19	40.2

DBSCAN-SWA_2

1050338 : 1099383

Salmonella_phage(84.62%)

holin,tail,lysis,capsid,tRNA,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000117867.1\|1050338_1051739_-\|tRNA	asparagine--tRNA ligase	A0A2K9V902	Bandra_megavirus	4.5e-81	35.8
WP_000762343.1\|1051939_1052401_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
WP_000544861.1\|1052717_1053932_+	diaminopropionate ammonia-lyase	NA	NA	NA	NA
WP_000893192.1\|1054177_1055611_+	sodium:alanine symporter family protein	NA	NA	NA	NA
WP_000191404.1\|1055691_1056894_-	nicotinate phosphoribosyltransferase	NA	NA	NA	NA
WP_001262307.1\|1057088_1058381_-	DUF3596 domain-containing protein	S4TSP2	Salmonella_phage	3.4e-253	100.0
WP_000065276.1\|1058425_1058674_-	excisionase family protein	S4TND0	Salmonella_phage	4.7e-42	100.0
WP_001237031.1\|1058714_1058954_-	DUF4060 family protein	S4TR31	Salmonella_phage	2.0e-37	100.0
WP_001539618.1\|1058996_1060154_-	recombinase RecT	S4TTE8	Salmonella_phage	1.6e-217	100.0
WP_000017138.1\|1060116_1063044_-	PD-(D/E)XK nuclease-like domain-containing protein	S4TNL0	Salmonella_phage	0.0e+00	100.0
WP_001669126.1\|1063170_1063521_-	hypothetical protein	S4TSN6	Salmonella_phage	7.5e-62	100.0
WP_000917564.1\|1063542_1063701_-	hypothetical protein	H6WRX3	Salmonella_phage	1.2e-22	98.1
WP_001009038.1\|1064099_1064504_-	transcriptional regulator	H6WRX4	Salmonella_phage	4.2e-72	100.0
WP_000869364.1\|1064633_1064870_+	helix-turn-helix domain-containing protein	H6WRX5	Salmonella_phage	1.8e-38	100.0
WP_001538023.1\|1064835_1065210_+	hypothetical protein	S4TTD7	Salmonella_phage	3.0e-64	100.0
WP_001669125.1\|1065294_1066278_+	replication protein	H6WRX7	Salmonella_phage	7.3e-163	99.7
WP_000800012.1\|1066280_1067030_+	ATP-binding protein	S4TNF5	Salmonella_phage	4.3e-139	100.0
WP_000113621.1\|1067040_1067388_+	DUF977 family protein	H6WRX9	Salmonella_phage	1.5e-57	98.3
WP_000065341.1\|1067384_1067786_+	ParB/RepB/Spo0J family partition protein	S4TTI6	Salmonella_phage	2.9e-73	100.0
WP_000151011.1\|1067782_1068235_+	ead/Ea22-like family protein	S4TNP2	Salmonella_phage	3.8e-74	100.0
WP_000208070.1\|1068231_1069041_+	DUF550 domain-containing protein	S4TSR6	Salmonella_phage	4.5e-158	100.0
WP_001217670.1\|1069560_1069800_+	DinI family protein	H6WRY5	Salmonella_phage	3.9e-38	100.0
WP_000929790.1\|1070133_1070736_+	DUF1367 family protein	S4TTI0	Salmonella_phage	7.5e-110	99.5
WP_001096547.1\|1070944_1071556_+	recombination protein NinG	A0A0M4RU10	Salmonella_phage	4.2e-92	99.5
WP_000801757.1\|1071552_1071693_+	YlcG family protein	A0A0M5M7B2	Salmonella_phage	7.2e-08	78.9
WP_000993184.1\|1071689_1072379_+	antitermination protein	I6PDF8	Cronobacter_phage	2.4e-59	51.9
WP_162264800.1\|1072579_1072921_+\|holin	phage holin, lambda family	Q8SBE1	Shigella_phage	9.6e-46	80.4
WP_001005894.1\|1072923_1073550_+	glycoside hydrolase family 19 protein	Q858F0	Salmonella_phage	7.1e-95	80.7
WP_001050821.1\|1073546_1074032_+\|lysis	lysis protein	Q8HA85	Salmonella_phage	4.2e-71	88.2
WP_000381863.1\|1074231_1074495_+	hypothetical protein	NA	NA	NA	NA
WP_001118125.1\|1074564_1075194_+	hypothetical protein	A0A0M3ULJ9	Salmonella_phage	9.3e-111	99.5
WP_001130809.1\|1075196_1076819_+	hypothetical protein	A0A0M5M1R6	Salmonella_phage	0.0e+00	99.3
WP_000113508.1\|1076818_1078285_+	DUF1073 domain-containing protein	A0A0M4S6U1	Salmonella_phage	1.2e-281	99.6
WP_077905805.1\|1078172_1078910_+\|capsid	minor capsid protein	A0A0M4REK0	Salmonella_phage	6.4e-111	99.0
WP_000873180.1\|1078924_1080157_+	DUF2213 domain-containing protein	A0A0M4R5A6	Salmonella_phage	2.0e-226	97.6
WP_000128058.1\|1080161_1080659_+	hypothetical protein	A0A0M4QWZ6	Salmonella_phage	3.0e-88	100.0
WP_000627464.1\|1080670_1081612_+	DUF2184 domain-containing protein	A0A0M3ULD3	Salmonella_phage	3.1e-179	100.0
WP_001040702.1\|1081653_1082022_+	hypothetical protein	A0A0M4RTX5	Salmonella_phage	8.7e-61	100.0
WP_001125673.1\|1081987_1082395_+	DUF4054 domain-containing protein	A0A0M5M3S2	Salmonella_phage	3.8e-73	100.0
WP_000008736.1\|1082391_1082946_+	hypothetical protein	A0A0M4S631	Salmonella_phage	1.8e-94	99.5
WP_001142474.1\|1082932_1083322_+	hypothetical protein	A0A0M3ULK0	Salmonella_phage	6.0e-68	97.7
WP_023261525.1\|1083296_1083860_+	hypothetical protein	A0A0M4R331	Salmonella_phage	4.7e-82	78.7
WP_023261524.1\|1083863_1085009_+	DUF3383 domain-containing protein	A0A2H4J8G4	uncultured_Caudovirales_phage	2.0e-164	75.3
WP_000535993.1\|1085021_1085465_+	DUF3277 family protein	A0A2H4J619	uncultured_Caudovirales_phage	6.0e-56	74.5
WP_001669124.1\|1085468_1085921_+	hypothetical protein	A0A0M4S6U8	Salmonella_phage	3.2e-65	81.3
WP_000990863.1\|1086098_1088108_+	transglycosylase SLT domain-containing protein	A0A0M4REK7	Salmonella_phage	0.0e+00	98.5
WP_000353826.1\|1088107_1088683_+	hypothetical protein	A0A0M3ULD5	Salmonella_phage	2.4e-97	100.0
WP_000155111.1\|1088682_1088985_+	hypothetical protein	A0A0M4R5B7	Salmonella_phage	4.2e-53	100.0
WP_000081751.1\|1088987_1090052_+	hypothetical protein	A0A0M4QX01	Salmonella_phage	8.8e-162	85.9
WP_024156220.1\|1090054_1090780_+	hypothetical protein	NA	NA	NA	NA
WP_000301076.1\|1090843_1091596_+	hypothetical protein	A0A0M5M1K7	Salmonella_phage	1.2e-93	71.7
WP_001270643.1\|1091595_1091949_+	hypothetical protein	A0A0M4R339	Salmonella_phage	2.1e-59	97.4
WP_001197094.1\|1091949_1093149_+\|plate	baseplate J/gp47 family protein	A0A0M4RD32	Salmonella_phage	2.2e-214	97.7
WP_000049935.1\|1093145_1093826_+	DUF2612 domain-containing protein	A0A0M5M1K4	Salmonella_phage	1.4e-128	98.2
WP_023261522.1\|1093825_1095487_+	hypothetical protein	A0A192Y7M1	Salmonella_phage	7.3e-131	57.8
WP_023261776.1\|1095501_1096020_+\|tail	tail fiber assembly protein	A0A0U2QV64	Escherichia_phage	1.9e-45	51.4
WP_065304850.1\|1096887_1097022_+\|tail	phage tail protein	NA	NA	NA	NA
WP_001669084.1\|1097140_1098109_+	SPI-2 type III secretion system effector SseI	Q9MBL9	Phage_Gifsy-2	8.7e-193	99.1
WP_000334547.1\|1098756_1099383_-	SOS response-associated peptidase	A0A2H4J5W2	uncultured_Caudovirales_phage	1.4e-66	63.2

DBSCAN-SWA_3

1279544 : 1332510

Salmonella_phage(51.43%)

holin,tail,terminase,lysis,capsid,protease,integrase,tRNA

attL 1273021:1273034|attR 1288828:1288841

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1273021:1273034	attL	NA	NA	NA	NA
WP_000004540.1\|1279544_1280651_-\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
WP_000476069.1\|1280704_1281166_-	NUDIX hydrolase	NA	NA	NA	NA
WP_000825956.1\|1281177_1281507_-	DUF1311 domain-containing protein	NA	NA	NA	NA
WP_001249407.1\|1281503_1282169_-	23S rRNA pseudouridine(2457) synthase RluE	NA	NA	NA	NA
WP_000444507.1\|1282340_1283591_+	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	1.1e-19	90.7
WP_076937888.1\|1283704_1284847_-\|integrase	phage integrase Arm DNA-binding domain-containing protein	O21929	Phage_21	8.2e-174	80.3
WP_000089141.1\|1284836_1285073_-	excisionase	NA	NA	NA	NA
WP_001749540.1\|1285689_1285920_-	hypothetical protein	A0A220NQV0	Salmonella_phage	5.0e-38	97.3
WP_076937889.1\|1285922_1286402_-	ead/Ea22-like family protein	A0A2H4FRZ0	Salmonella_phage	4.1e-42	56.1
WP_075584470.1\|1286510_1287128_-	Eae-like protein	Q5G8U6	Enterobacteria_phage	6.1e-75	72.1
WP_001215095.1\|1287115_1287286_-	DUF2737 family protein	Q5G8U5	Enterobacteria_phage	5.7e-23	92.9
WP_000773122.1\|1287282_1287570_-	hypothetical protein	Q5G8U4	Enterobacteria_phage	3.4e-44	96.8
WP_058108948.1\|1287580_1287874_-	DUF2856 family protein	Q5G8U3	Enterobacteria_phage	3.5e-44	90.7
WP_001016182.1\|1287889_1288438_-	3'-5' exoribonuclease	C6ZR35	Salmonella_phage	2.1e-106	100.0
WP_000168279.1\|1288446_1288953_-	single-stranded DNA-binding protein	C6ZR36	Salmonella_phage	2.3e-91	99.4
1288828:1288841	attR	NA	NA	NA	NA
WP_076937890.1\|1288953_1289661_-	recombinase	E7C9Q0	Salmonella_phage	8.5e-137	97.0
WP_000361564.1\|1289854_1289968_-	host cell division inhibitory peptide Kil	C6ZR39	Salmonella_phage	7.8e-13	100.0
WP_001541875.1\|1289960_1290107_-\|protease	protease FtsH-inhibitory lysogeny factor CIII	E7C9Q3	Salmonella_phage	1.3e-20	100.0
WP_076937891.1\|1290315_1290975_-	hypothetical protein	A0A2H4FRY7	Salmonella_phage	2.3e-80	85.5
WP_000246166.1\|1291058_1291253_-	Restriction inhibitor protein ral	A0A2H4FS18	Salmonella_phage	2.5e-30	100.0
WP_023200932.1\|1291331_1291664_-	hypothetical protein	A0A1R3Y5R1	Salmonella_virus	1.1e-51	95.5
WP_052934935.1\|1292042_1292246_+	hypothetical protein	A0A2H5BFH9	Salmonella_phage	2.3e-26	97.0
WP_020899481.1\|1292281_1293205_-	hypothetical protein	A0A1R3Y6Z6	Salmonella_virus	4.3e-181	99.7
WP_000712403.1\|1293293_1293983_-	helix-turn-helix transcriptional regulator	Q76H56	Enterobacteria_phage	1.3e-126	100.0
WP_000182204.1\|1294093_1294309_+	helix-turn-helix domain-containing protein	Q76H55	Enterobacteria_phage	1.3e-32	100.0
WP_001103492.1\|1294419_1294701_+	hypothetical protein	Q76H54	Enterobacteria_phage	4.3e-44	100.0
WP_119472050.1\|1294735_1294882_+	DUF2740 family protein	A0A075B8K7	Enterobacteria_phage	2.8e-18	97.9
WP_006789497.1\|1294874_1295774_+	hypothetical protein	A0A220NQX5	Salmonella_phage	1.5e-154	99.3
WP_023200930.1\|1295763_1297200_+	AAA family ATPase	A0A220NQX0	Salmonella_phage	8.2e-272	98.7
WP_000654041.1\|1297274_1297547_+	DUF4752 family protein	A0A220NQX8	Salmonella_phage	1.0e-42	98.9
WP_001552357.1\|1297777_1298107_+	hypothetical protein	K7PHN9	Enterobacterial_phage	4.6e-37	67.7
WP_001640862.1\|1298063_1298510_+	recombination protein NinB	I6R0N7	Salmonella_phage	7.8e-80	97.3
WP_001254255.1\|1298506_1298683_+	NinE family protein	A5VW90	Enterobacteria_phage	4.6e-28	100.0
WP_076937893.1\|1298679_1299090_+	DUF2591 family protein	A0A088CQ65	Enterobacteria_phage	9.8e-53	76.8
WP_000950975.1\|1299082_1299259_+	protein ninF	G9L691	Escherichia_phage	9.7e-26	100.0
WP_001108033.1\|1299251_1299863_+	recombination protein NinG	K7PHM2	Enterobacterial_phage	4.6e-99	99.5
WP_001659073.1\|1299859_1300063_+	phage NinH family protein	A0A075B8J4	Enterobacteria_phage	8.8e-31	94.0
WP_016048830.1\|1300043_1300223_+	hypothetical protein	A0A192Y814	Salmonella_phage	7.1e-24	100.0
WP_023200924.1\|1300219_1300984_+	antitermination protein	Q5G8R6	Enterobacteria_phage	1.1e-142	99.2
WP_000738703.1\|1301427_1301754_+\|holin	phage holin, lambda family	Q5G8R5	Enterobacteria_phage	1.7e-52	100.0
WP_046380608.1\|1301737_1302175_+	lysozyme	Q5G8R3	Enterobacteria_phage	1.4e-73	97.9
WP_076937894.1\|1302171_1302642_+\|lysis	lysis protein	Q56118	Enterobacteria_phage	5.7e-65	83.3
WP_076937895.1\|1302859_1303549_+	Rha family transcriptional regulator	Q5G8R0	Enterobacteria_phage	1.2e-124	99.1
WP_000147264.1\|1303984_1304416_+\|terminase	terminase small subunit	A0A1V0E5Q4	Salmonella_phage	7.6e-72	100.0
WP_076937896.1\|1304399_1305719_+\|terminase	PBSX family phage terminase large subunit	H6WRS9	Salmonella_phage	3.5e-261	99.3
WP_052929380.1\|1305851_1307204_+	DUF1073 domain-containing protein	H6WRT0	Salmonella_phage	1.5e-259	99.8
WP_058820360.1\|1307157_1308117_+\|capsid	minor capsid protein	H6WRT1	Salmonella_phage	1.8e-174	97.8
WP_076937897.1\|1308132_1309395_+	hypothetical protein	H6WRT2	Salmonella_phage	1.4e-238	99.8
WP_001747835.1\|1309407_1309857_+	hypothetical protein	H6WRT3	Salmonella_phage	1.6e-77	100.0
WP_076937898.1\|1309874_1310951_+	hypothetical protein	I6RSK5	Salmonella_phage	1.3e-205	99.4
WP_076937899.1\|1310960_1311149_+	glycoprotein	Q5G8X9	Enterobacteria_phage	5.0e-28	98.4
WP_070818895.1\|1311200_1311602_+	hypothetical protein	I6S619	Salmonella_phage	2.5e-69	95.5
WP_000312329.1\|1311601_1311781_+	DUF551 domain-containing protein	Q5G8X7	Enterobacteria_phage	8.6e-30	100.0
WP_070818894.1\|1311773_1312136_+	hypothetical protein	H6WRT8	Salmonella_phage	1.2e-67	99.2
WP_076937900.1\|1312143_1312581_+	hypothetical protein	A0A1V0E5P5	Salmonella_phage	2.3e-76	99.3
WP_070818892.1\|1312577_1312964_+	hypothetical protein	I6R9A6	Salmonella_phage	3.8e-67	98.4
WP_070818891.1\|1312981_1313722_+	immunoglobulin domain-containing protein	H6WRU1	Salmonella_phage	5.6e-131	98.8
WP_070818890.1\|1313766_1314420_+	hypothetical protein	H6WRU2	Salmonella_phage	5.6e-119	98.6
WP_076937901.1\|1314778_1316308_+	DUF4041 domain-containing protein	Q5G8X0	Enterobacteria_phage	1.3e-166	99.0
WP_102136173.1\|1316405_1316876_+	hypothetical protein	Q5G8W9	Enterobacteria_phage	1.7e-80	100.0
WP_070818888.1\|1316937_1320312_+	tape measure protein	Q5G8W8	Enterobacteria_phage	0.0e+00	98.6
WP_076937902.1\|1320312_1320711_-	hypothetical protein	Q5G8W7	Enterobacteria_phage	2.5e-69	97.7
WP_031608850.1\|1320803_1321151_+\|tail	phage tail protein	Q5G8W6	Enterobacteria_phage	2.4e-60	95.7
WP_049836263.1\|1321172_1321409_+	hypothetical protein	NA	NA	NA	NA
WP_031608851.1\|1321362_1321620_-	hypothetical protein	K7P7V5	Enterobacteria_phage	9.5e-30	87.7
WP_031608852.1\|1321788_1322493_+\|tail	phage minor tail protein L	A0A1V0E5N2	Salmonella_phage	6.0e-135	97.4
WP_031608854.1\|1322492_1323212_+	C40 family peptidase	I6S1R8	Salmonella_phage	1.2e-143	97.5
WP_031608855.1\|1323154_1323682_+\|tail	tail assembly protein	H6WRW3	Salmonella_phage	1.1e-64	82.8
WP_076937903.1\|1323691_1326874_+\|tail	phage tail protein	H6WRW4	Salmonella_phage	0.0e+00	93.3
WP_052934738.1\|1326882_1327842_+	hypothetical protein	H6WRW5	Salmonella_phage	2.3e-177	96.2
WP_058806116.1\|1327851_1329033_+	hypothetical protein	S4TSP4	Salmonella_phage	2.9e-57	70.5
WP_058806117.1\|1329206_1329449_-	DinI family protein	S4TND2	Salmonella_phage	9.2e-27	87.9
WP_058806118.1\|1329689_1330109_+	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	1.4e-35	58.3
WP_058806119.1\|1330111_1331380_+	Y-family DNA polymerase	I6RSM4	Salmonella_phage	5.8e-245	98.6
WP_058806120.1\|1331372_1332044_-	SOS response-associated peptidase	A0A2H4J5W2	uncultured_Caudovirales_phage	1.8e-80	61.3
WP_001521673.1\|1332297_1332510_+	isocitrate dehydrogenase	Q77Z09	Phage_21	1.5e-20	92.6

DBSCAN-SWA_4

2088892 : 2141283

Salmonella_phage(74.19%)

holin,tail,terminase,lysis,capsid,head,portal,protease,integrase,plate

attL 2128492:2128507|attR 2140023:2140038

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001157313.1\|2088892_2090323_-	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	1.0e-104	57.4
WP_000377048.1\|2090396_2091092_-	phosphohydrolase	A0A1D6Y7U0	Golden_Marseillevirus	2.1e-07	27.1
WP_000107430.1\|2091183_2091483_-	membrane protein	NA	NA	NA	NA
WP_001080683.1\|2092132_2093344_+	porin OmpC	Q1MVN1	Enterobacteria_phage	1.3e-108	56.0
WP_024131109.1\|2093601_2093790_-	hypothetical protein	NA	NA	NA	NA
WP_000187976.1\|2093800_2094013_-	cold-shock protein	A0A1W6JNX5	Morganella_phage	5.1e-21	70.0
WP_000457666.1\|2094467_2095736_-	Y-family DNA polymerase	I6RSM4	Salmonella_phage	1.3e-225	91.7
WP_000394197.1\|2095738_2096158_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	8.5e-36	60.5
WP_001532308.1\|2096284_2096446_-	hypothetical protein	NA	NA	NA	NA
WP_001093793.1\|2097639_2097852_+	hypothetical protein	A0A192Y5V6	Salmonella_phage	2.7e-30	100.0
WP_000842532.1\|2097848_2098262_+	hypothetical protein	A0A192Y6F0	Salmonella_phage	2.9e-73	100.0
WP_122815478.1\|2098309_2098423_+	hypothetical protein	A0A1C9IHU6	Salmonella_phage	4.3e-11	100.0
WP_000836773.1\|2098497_2098731_+	hypothetical protein	A0A192Y6D5	Salmonella_phage	1.2e-36	100.0
WP_022742744.1\|2098844_2099450_-\|tail	tail fiber assembly protein	A0A192Y8L2	Salmonella_phage	2.7e-107	100.0
WP_000554735.1\|2099419_2100982_-	hypothetical protein	A0A192Y7M1	Salmonella_phage	1.7e-283	98.5
WP_001207832.1\|2100968_2101556_-	DUF2313 domain-containing protein	A0A192Y5V3	Salmonella_phage	2.9e-114	100.0
WP_000785581.1\|2101558_2102638_-\|plate	baseplate J/gp47 family protein	A0A192Y6E4	Salmonella_phage	7.2e-204	99.2
WP_000605055.1\|2102630_2103044_-	phage GP46 family protein	A0A192Y6D0	Salmonella_phage	1.2e-74	99.3
WP_001273649.1\|2103048_2103582_-\|plate	phage baseplate assembly protein	Q8HAB9	Salmonella_phage	1.4e-96	100.0
WP_001066632.1\|2103581_2104640_-\|plate	baseplate protein	A0A192Y7L7	Salmonella_phage	3.0e-202	99.7
WP_000863828.1\|2104636_2105977_-	DNA circularization N-terminal domain-containing protein	A0A192Y5U9	Salmonella_phage	4.4e-251	99.6
WP_001033736.1\|2106036_2106486_-	hypothetical protein	NA	NA	NA	NA
WP_000785381.1\|2106502_2108428_-\|tail	phage tail tape measure protein	Q8HAC2	Salmonella_phage	0.0e+00	97.3
WP_000588852.1\|2108512_2108839_-\|tail	phage tail assembly protein	Q8HAC3	Salmonella_phage	2.3e-52	99.1
WP_000515953.1\|2108835_2109192_-\|tail	phage tail tube protein	A0A192Y8K0	Salmonella_phage	1.3e-61	99.2
WP_001007988.1\|2109191_2110688_-\|tail	phage tail sheath subtilisin-like domain-containing protein	Q8HAC5	Salmonella_phage	1.2e-276	99.2
WP_000497755.1\|2110677_2110842_-	DUF2635 domain-containing protein	Q8HAC6	Salmonella_phage	8.4e-24	96.3
WP_001241332.1\|2110863_2111409_-	hypothetical protein	A0A192Y5U4	Salmonella_phage	3.6e-87	84.7
WP_001179802.1\|2111405_2111918_-	hypothetical protein	Q8HAC8	Salmonella_phage	3.1e-80	86.5
WP_001255650.1\|2111889_2112303_-\|head	phage head closure protein	A0A192Y6C2	Salmonella_phage	3.5e-50	74.8
WP_000901160.1\|2112314_2112638_-\|head,tail	phage gp6-like head-tail connector protein	K7PKT4	Enterobacteria_phage	8.3e-31	56.5
WP_001530535.1\|2112637_2112898_-	hypothetical protein	K7PHI6	Enterobacteria_phage	2.9e-10	66.0
WP_000005722.1\|2112941_2114159_-\|capsid	phage major capsid protein	K7PM57	Enterobacteria_phage	1.4e-195	87.4
WP_000039021.1\|2114168_2115017_-\|protease	Clp protease ClpP	K7PH05	Enterobacteria_phage	4.4e-132	88.2
WP_000002707.1\|2115030_2116335_-\|portal	phage portal protein	K7PJU5	Enterobacteria_phage	6.2e-218	85.9
WP_000229716.1\|2116334_2118077_-\|terminase	terminase large subunit	A0A0U2C138	Paracoccus_phage	5.3e-140	44.5
WP_000919034.1\|2118030_2118495_-\|terminase	phage terminase small subunit P27 family	Q9B019	Phage_GMSE-1	1.3e-48	62.1
WP_023891432.1\|2118627_2118972_-	HNH endonuclease	K7P6U5	Enterobacteria_phage	7.4e-46	73.0
WP_000268746.1\|2119067_2119391_+	hypothetical protein	NA	NA	NA	NA
WP_077906432.1\|2119875_2120319_-\|lysis	lysis protein	A0A0M4RD57	Salmonella_phage	5.4e-57	83.9
WP_001005904.1\|2120351_2120966_-	glycoside hydrolase family 19 protein	Q8HA86	Salmonella_phage	8.2e-112	97.1
WP_001668825.1\|2120968_2121313_-\|holin	phage holin, lambda family	Q8HA87	Salmonella_phage	3.4e-43	98.8
WP_001668823.1\|2122947_2123784_-	antitermination protein	A0A1B5FPA5	Escherichia_phage	6.5e-128	80.8
WP_000609695.1\|2123780_2124053_-	hypothetical protein	A0A1B5FPA6	Escherichia_phage	2.1e-27	76.3
WP_001202280.1\|2124067_2125057_-	DUF968 domain-containing protein	A0A1C9IHZ5	Salmonella_phage	5.4e-190	97.3
WP_001061460.1\|2125064_2125925_-	KilA-N domain-containing protein	Q8HA92	Salmonella_phage	2.1e-161	99.0
WP_000779148.1\|2125941_2126331_-	RusA family crossover junction endodeoxyribonuclease	A0A1C9IIA0	Salmonella_phage	4.9e-70	100.0
WP_000200164.1\|2126339_2127221_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	A0A1C9II58	Salmonella_phage	1.3e-171	100.0
WP_000054228.1\|2127217_2127691_-	PerC family transcriptional regulator	A0A1C9IHW0	Salmonella_phage	4.9e-56	100.0
WP_072600588.1\|2127687_2128662_-	conserved phage C-terminal domain-containing protein	A0A1C9IHW0	Salmonella_phage	2.6e-168	99.4
2128492:2128507	attL	NA	NA	NA	NA
WP_000620702.1\|2128658_2128883_-	hypothetical protein	A0A1C9II64	Salmonella_phage	3.3e-39	100.0
WP_001087404.1\|2128879_2130022_-	Rha family phage regulatory protein	A0A1C9IHV9	Salmonella_phage	1.5e-212	100.0
WP_000509731.1\|2130018_2130573_-	hypothetical protein	A0A1C9II13	Salmonella_phage	6.9e-102	100.0
WP_001191666.1\|2130601_2130826_-	helix-turn-helix transcriptional regulator	A0A1C9IHV8	Salmonella_phage	1.9e-34	100.0
WP_001020636.1\|2130923_2131619_+	helix-turn-helix transcriptional regulator	Q8HAA0	Salmonella_phage	3.2e-128	100.0
WP_001067432.1\|2131824_2132163_+	hypothetical protein	A0A1C9IHZ4	Salmonella_phage	7.0e-57	100.0
WP_023891434.1\|2132125_2132350_-	hypothetical protein	A0A1C9IHY8	Salmonella_phage	1.6e-33	100.0
WP_000997191.1\|2132889_2133261_+	hypothetical protein	A0A192Y6G0	Salmonella_phage	2.5e-63	100.0
WP_000080416.1\|2133318_2134146_+	DUF2303 family protein	A0A192Y6E5	Salmonella_phage	2.6e-153	100.0
WP_000008353.1\|2134282_2134822_+	hypothetical protein	A0A192Y8M4	Salmonella_phage	1.3e-97	99.4
WP_000215886.1\|2134892_2135426_+	hypothetical protein	A0A192Y7N1	Salmonella_phage	2.5e-101	100.0
WP_000224241.1\|2135427_2135685_+	hypothetical protein	A0A192Y5W0	Salmonella_phage	1.3e-42	100.0
WP_000208069.1\|2135695_2136529_+	hypothetical protein	Q8HAA7	Salmonella_phage	4.0e-162	99.6
WP_001061334.1\|2136532_2137102_+	3'-5' exoribonuclease	A0A192Y6E0	Salmonella_phage	7.1e-110	100.0
WP_001527041.1\|2137141_2137369_+	DUF4224 domain-containing protein	Q8HAA9	Salmonella_phage	3.2e-37	100.0
WP_000532847.1\|2137370_2138360_+\|integrase	tyrosine-type recombinase/integrase	A0A192Y7M7	Salmonella_phage	8.6e-196	100.0
WP_000598921.1\|2138651_2139449_+	DgsA anti-repressor MtfA	NA	NA	NA	NA
WP_001219023.1\|2140758_2141283_+	peptidase	G9L6C4	Escherichia_phage	1.3e-36	77.7
2140023:2140038	attR	NA	NA	NA	NA

DBSCAN-SWA_5

2234426 : 2244933

Enterobacteria_phage(37.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000126352.1\|2234426_2235740_-	lipopolysaccharide biosynthesis protein RfbH	H8ZJ36	Ostreococcus_tauri_virus	7.0e-52	35.1
WP_000565902.1\|2235766_2236846_-	CDP-glucose 4,6-dehydratase	A0A222YY99	Synechococcus_phage	1.3e-16	24.5
WP_000648783.1\|2236850_2237624_-	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA
WP_000018224.1\|2237639_2238614_-	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA
WP_000973714.1\|2238619_2239171_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	1.0e-52	58.0
WP_000857530.1\|2239171_2240050_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	5.1e-107	64.8
WP_001023659.1\|2240097_2240997_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	5.1e-30	36.0
WP_000697840.1\|2240996_2242082_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.2e-102	53.9
WP_000981469.1\|2242458_2243352_-	GalU regulator GalF	A0A127AW70	Bacillus_phage	4.8e-44	42.2
WP_001111836.1\|2243529_2244933_-	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	3.1e-21	26.5

DBSCAN-SWA_6

2319431 : 2328602

Enterobacteria_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000195330.1\|2319431_2321465_+\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	1.0e-54	27.6
WP_000703137.1\|2321705_2322164_+	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	8.4e-53	72.5
WP_001265355.1\|2322335_2322866_+	YehR family lipoprotein	NA	NA	NA	NA
WP_000950413.1\|2322922_2323390_-	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	3.9e-74	90.3
WP_000598637.1\|2323436_2324156_-	two-component system response regulator BtsR	NA	NA	NA	NA
WP_000272850.1\|2324152_2325838_-	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	4.8e-279	91.3
WP_001240418.1\|2326060_2326792_+	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	4.5e-101	87.9
WP_001261696.1\|2326851_2326959_+	protein YohO	NA	NA	NA	NA
WP_000824855.1\|2326939_2327671_-	ABC transporter permease	NA	NA	NA	NA
WP_000569165.1\|2327654_2328602_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.7e-23	31.2

DBSCAN-SWA_7

2795428 : 2898696

Enterobacteria_phage(28.57%)

holin,tail,terminase,transposase,portal,protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000083347.1\|2795428_2796166_-\|tRNA	tRNA(1)(Val) (adenine(37)-N(6))-methyltransferase TrmN	NA	NA	NA	NA
WP_000219174.1\|2796295_2797630_+	ATP-dependent RNA helicase SrmB	A0A1B1IS59	uncultured_Mediterranean_phage	1.6e-43	29.7
WP_024133293.1\|2797647_2798547_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_000188410.1\|2798649_2799237_+	cysteine/O-acetylserine transporter	NA	NA	NA	NA
WP_000627811.1\|2799298_2799682_-	autonomous glycyl radical cofactor GrcA	Q7Y524	Enterobacteria_phage	6.1e-33	74.0
WP_000179978.1\|2800000_2800690_+	uracil-DNA glycosylase	A0A172DS90	Canid_alphaherpesvirus	4.6e-55	49.5
WP_000997374.1\|2800805_2801843_-\|tRNA	tRNA/rRNA methyltransferase	NA	NA	NA	NA
WP_001098732.1\|2802046_2802466_+	thioredoxin TrxC	A0A0K2FIM3	Achromobacter_phage	1.2e-16	40.6
WP_000183642.1\|2802538_2803219_+\|tRNA	tRNA-uridine aminocarboxypropyltransferase	NA	NA	NA	NA
WP_000082639.1\|2803272_2805933_+	protein lysine acetyltransferase	NA	NA	NA	NA
WP_000949286.1\|2806047_2807403_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA
WP_001264473.1\|2807447_2807771_+	YfiM family lipoprotein	NA	NA	NA	NA
WP_000807810.1\|2807767_2809069_-	MFS transporter	Q6JIH2	Burkholderia_virus	9.1e-44	30.4
WP_000985653.1\|2809172_2809628_-	DUF4385 domain-containing protein	E3SMI8	Prochlorococcus_phage	3.0e-34	50.0
WP_001235092.1\|2815456_2818030_-	ATP-dependent chaperone ClpB	H6X3M6	Enterobacteria_phage	2.6e-127	35.5
WP_000992632.1\|2818159_2818891_-	polyphenol oxidase	NA	NA	NA	NA
WP_000079130.1\|2818887_2819868_-	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA	NA	NA	NA
WP_000197660.1\|2819999_2820737_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA
WP_000178449.1\|2821008_2821347_+	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA
WP_010989056.1\|2821450_2821498_+	pheA operon leader peptide PheL	NA	NA	NA	NA
WP_000200080.1\|2821597_2822758_+	bifunctional chorismate mutase/prephenate dehydratase	NA	NA	NA	NA
WP_000210990.1\|2822718_2823627_-	SMP-30/gluconolactonase/LRE family protein	NA	NA	NA	NA
WP_000225185.1\|2823684_2824806_-	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA
WP_001168062.1\|2824815_2825886_-	3-deoxy-7-phosphoheptulonate synthase AroF	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	2.4e-90	51.8
WP_001212379.1\|2826325_2826844_+	YfiR family protein	NA	NA	NA	NA
WP_001030985.1\|2826836_2828057_+	diguanylate cyclase DgcN	A0A2K8I9Y5	Pseudomonas_phage	5.8e-08	36.2
WP_000065257.1\|2828213_2828561_-	50S ribosomal protein L19	NA	NA	NA	NA
WP_000469812.1\|2828601_2829369_-\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
WP_000043266.1\|2829413_2829962_-	ribosome maturation factor RimM	NA	NA	NA	NA
WP_000256453.1\|2829980_2830229_-	30S ribosomal protein S16	NA	NA	NA	NA
WP_000460052.1\|2830572_2831934_-	signal recognition particle protein	NA	NA	NA	NA
WP_001537507.1\|2832099_2832891_+	inner membrane protein YpjD	NA	NA	NA	NA
WP_127172650.1\|2832910_2834197_+	HlyC/CorC family transporter	NA	NA	NA	NA
WP_001287924.1\|2834317_2834923_+	hypothetical protein	NA	NA	NA	NA
WP_001518875.1\|2834957_2835548_-	nucleotide exchange factor GrpE	NA	NA	NA	NA
WP_001059160.1\|2835670_2836549_+	NAD(+) kinase	NA	NA	NA	NA
WP_000880965.1\|2836634_2838296_+	DNA repair protein RecN	NA	NA	NA	NA
WP_001203445.1\|2838444_2838783_+	outer membrane protein assembly factor BamE	NA	NA	NA	NA
WP_001112990.1\|2838948_2839239_-	RnfH family protein	NA	NA	NA	NA
WP_000242603.1\|2839228_2839705_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA
WP_001518569.1\|2839854_2840337_+	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	5.2e-29	47.4
WP_001237683.1\|2840951_2852426_+	biofilm-associated protein BapA	NA	NA	NA	NA
WP_000533845.1\|2852490_2853900_+	TolC family outer membrane protein	NA	NA	NA	NA
WP_000196135.1\|2853896_2856077_+	type I secretion system permease/ATPase	F2Y302	Organic_Lake_phycodnavirus	1.3e-18	34.0
WP_000342601.1\|2856084_2857248_+	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA
WP_072600494.1\|2857976_2859182_+	DUF4236 domain-containing protein	NA	NA	NA	NA
WP_072600492.1\|2859369_2859759_-	DNA polymerase V	Q1MVE7	Enterobacteria_phage	1.1e-50	71.3
WP_000497432.1\|2860079_2860322_+	DinI family protein	Q6UAW0	Klebsiella_phage	3.4e-29	76.6
WP_001272641.1\|2860545_2861727_-	hypothetical protein	S4TSP4	Salmonella_phage	1.2e-55	68.9
WP_001113924.1\|2861737_2862697_-	hypothetical protein	H6WRW5	Salmonella_phage	2.1e-175	94.4
WP_001162257.1\|2862698_2865902_-	host specificity protein J	O64335	Escherichia_phage	0.0e+00	88.7
WP_000659016.1\|2865955_2866561_-\|tail	tail assembly protein	K7PGY0	Enterobacteria_phage	1.4e-100	97.0
WP_000709674.1\|2866604_2866946_-	hypothetical protein	K7PLP0	Enterobacteria_phage	5.6e-54	92.9
WP_001249174.1\|2866975_2867686_-	C40 family peptidase	K7P6F5	Enterobacteria_phage	1.1e-136	90.7
WP_000056207.1\|2867687_2868443_-\|tail	phage minor tail protein L	K7PGX3	Enterobacteria_phage	1.8e-129	85.3
WP_000963482.1\|2868439_2868787_-\|tail	phage tail protein	K7PJT2	Enterobacteria_phage	1.0e-39	69.6
WP_000079422.1\|2868790_2871307_-\|tail	phage tail tape measure protein	K7PKR0	Enterobacteria_phage	1.0e-309	69.2
WP_071529728.1\|2871284_2871605_-\|tail	phage tail assembly protein T	K7PHE1	Enterobacteria_phage	2.1e-34	69.8
WP_000479023.1\|2871613_2872021_-\|tail	phage minor tail protein G	K7PM17	Enterobacteria_phage	3.8e-25	57.9
WP_000211139.1\|2872057_2872795_-	Ig-like domain-containing protein	O64327	Escherichia_phage	3.6e-90	66.9
WP_000797819.1\|2872802_2873201_-\|tail	tail protein	K7PHM6	Enterobacterial_phage	6.8e-43	62.0
WP_000023109.1\|2873197_2873752_-\|tail	phage tail protein	K7P7A8	Enterobacteria_phage	2.4e-62	76.7
WP_000933904.1\|2873764_2874040_-	DNA breaking-rejoining protein	K7PH43	Enterobacteria_phage	2.6e-25	61.5
WP_001097009.1\|2874032_2874359_-	DUF2190 family protein	K7PJY3	Enterobacterial_phage	2.4e-30	60.2
WP_001125851.1\|2874450_2876475_-\|protease	Clp protease ClpP	K7PKX4	Enterobacterial_phage	0.0e+00	84.7
WP_000054308.1\|2876419_2877928_-\|portal	phage portal protein	K7PHM5	Enterobacterial_phage	4.2e-258	86.7
WP_001082414.1\|2877924_2878140_-	hypothetical protein	A5LH28	Enterobacteria_phage	1.5e-25	82.9
WP_001118990.1\|2878136_2880239_-\|terminase	phage terminase large subunit family protein	K7PH52	Enterobacterial_phage	0.0e+00	86.6
WP_001670093.1\|2880238_2880727_-	DUF1441 family protein	K7PJY2	Enterobacterial_phage	6.3e-75	90.7
WP_000761930.1\|2880910_2881237_-	hypothetical protein	M9NZE9	Enterobacteria_phage	2.9e-07	80.0
WP_000120194.1\|2881746_2882061_+	hypothetical protein	NA	NA	NA	NA
WP_001100261.1\|2882152_2882383_-	hypothetical protein	NA	NA	NA	NA
WP_000522146.1\|2882523_2882793_-	hypothetical protein	G8C7W1	Escherichia_phage	2.2e-21	69.0
WP_072600490.1\|2882800_2883415_-	glycoside hydrolase family 19 protein	Q8HA86	Salmonella_phage	5.5e-92	80.4
WP_000250463.1\|2883414_2883696_-\|holin	phage holin family protein	A0A0U2SHD1	Escherichia_phage	3.1e-18	50.0
WP_001283171.1\|2883682_2884069_-\|holin	phage holin family protein	A0A192Y8P2	Salmonella_phage	1.0e-56	93.0
WP_076937917.1\|2884230_2884671_-\|transposase	IS200/IS605 family transposase	I4AZI8	Saccharomonospora_phage	4.3e-14	31.5
WP_000417508.1\|2884857_2885433_-	hypothetical protein	NA	NA	NA	NA
WP_000609697.1\|2885623_2886193_-	DUF1133 family protein	A0A0U2S606	Escherichia_phage	1.5e-46	54.4
WP_003034741.1\|2887904_2888291_-	RusA family crossover junction endodeoxyribonuclease	A0A192Y8N5	Salmonella_phage	4.1e-61	89.1
WP_072600486.1\|2888287_2889607_-	phage N-6-adenine-methyltransferase	Q8HA94	Salmonella_phage	8.7e-119	52.5
WP_072600484.1\|2889603_2890461_-	conserved phage C-terminal domain-containing protein	A0A1C9IHW0	Salmonella_phage	2.0e-60	96.6
WP_003034732.1\|2890450_2890630_-	DUF4222 domain-containing protein	S5M7S5	Escherichia_phage	3.0e-14	73.1
WP_045445262.1\|2890802_2891354_-	hypothetical protein	Q8SBF4	Shigella_phage	7.0e-46	53.5
WP_072600482.1\|2891364_2891610_-	helix-turn-helix transcriptional regulator	A0A0P0ZCZ7	Stx2-converting_phage	1.0e-17	54.3
WP_072600479.1\|2891707_2892400_+	helix-turn-helix transcriptional regulator	Q8HAA0	Salmonella_phage	3.2e-88	70.9
WP_070810426.1\|2893428_2893800_+	hypothetical protein	Q8HAA1	Salmonella_phage	3.6e-54	85.4
WP_070810427.1\|2893856_2894684_+	DUF2303 family protein	Q8HAA2	Salmonella_phage	8.4e-144	94.2
WP_000120457.1\|2894812_2895352_+	hypothetical protein	A0A192Y8M4	Salmonella_phage	9.5e-80	81.0
WP_001253786.1\|2895339_2895516_+	hypothetical protein	NA	NA	NA	NA
WP_000125081.1\|2895512_2895827_+	hypothetical protein	I6RSM9	Salmonella_phage	3.4e-21	85.0
WP_000840609.1\|2895826_2896300_+	class I SAM-dependent methyltransferase	H9C170	Pectobacterium_phage	1.1e-66	78.1
WP_000210516.1\|2896303_2896744_+	hypothetical protein	A0A088CE95	Shigella_phage	3.1e-12	40.3
WP_001061331.1\|2896745_2897315_+	3'-5' exoribonuclease	K7PLW7	Enterobacteria_phage	3.7e-90	81.3
WP_000537359.1\|2897520_2898696_+	DUF3596 domain-containing protein	I6PDJ1	Cronobacter_phage	1.4e-147	67.4

DBSCAN-SWA_8

4213068 : 4305903

103

Salmonella_phage(45.45%)

protease,holin,tail,plate,lysis,capsid,head,portal,terminase,integrase,tRNA

attL 4245977:4246023|attR 4275995:4276041

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000560974.1\|4213068_4213506_+\|tRNA	D-tyrosyl-tRNA(Tyr) deacylase	NA	NA	NA	NA
WP_001518251.1\|4213550_4214492_+	fatty acid biosynthesis protein FabY	NA	NA	NA	NA
WP_001259012.1\|4214506_4214953_-	type II toxin-antitoxin system HigA family antitoxin	NA	NA	NA	NA
WP_000558159.1\|4214949_4215261_-	type II toxin-antitoxin system HigB family toxin	NA	NA	NA	NA
WP_001127707.1\|4215346_4216276_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_001159635.1\|4216493_4216805_+	cytotoxic translational repressor of toxin-antitoxin stability system	NA	NA	NA	NA
WP_000362050.1\|4216805_4217096_+	DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_076937926.1\|4217142_4218072_-	formate dehydrogenase accessory protein FdhE	NA	NA	NA	NA
WP_000829025.1\|4218068_4218704_-	formate dehydrogenase cytochrome b556 subunit	NA	NA	NA	NA
WP_000331361.1\|4218700_4219603_-	formate dehydrogenase subunit beta	NA	NA	NA	NA
WP_077248424.1\|4219615_4222666_-	formate dehydrogenase-N subunit alpha	A0A077SK27	Escherichia_phage	4.6e-06	24.1
WP_001059739.1\|4222860_4223697_+	formate dehydrogenase accessory sulfurtransferase FdhD	NA	NA	NA	NA
WP_000710968.1\|4223964_4224996_-	YiiG family protein	NA	NA	NA	NA
WP_000527676.1\|4226634_4226958_-	AzlD domain-containing protein	NA	NA	NA	NA
WP_000683586.1\|4226957_4227617_-	AzlC family ABC transporter permease	NA	NA	NA	NA
WP_001517951.1\|4227717_4228266_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000619477.1\|4228354_4228669_-	L-rhamnose mutarotase	NA	NA	NA	NA
WP_000009256.1\|4228665_4229814_-	lactaldehyde reductase	NA	NA	NA	NA
WP_001179700.1\|4229940_4230768_-	rhamnulose-1-phosphate aldolase	NA	NA	NA	NA
WP_000211476.1\|4230910_4232170_-	L-rhamnose isomerase	NA	NA	NA	NA
WP_000143970.1\|4232166_4233636_-	rhamnulokinase	NA	NA	NA	NA
WP_000217112.1\|4233923_4234760_+	HTH-type transcriptional activator RhaS	NA	NA	NA	NA
WP_000013290.1\|4234912_4235761_+	HTH-type transcriptional activator RhaR	NA	NA	NA	NA
WP_000063541.1\|4235757_4236792_-	L-rhamnose/proton symporter RhaT	NA	NA	NA	NA
WP_000378723.1\|4237410_4238094_+	oligogalacturonate-specific porin KdgM family protein	NA	NA	NA	NA
WP_000566800.1\|4238251_4239559_-	TRAP transporter large permease	NA	NA	NA	NA
WP_001091413.1\|4239551_4240067_-	TRAP transporter small permease	NA	NA	NA	NA
WP_000812816.1\|4240085_4241069_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA
WP_000122632.1\|4241397_4242018_+	superoxide dismutase [Mn]	Q56AR7	Bacillus_thuringiensis_phage	2.4e-63	58.9
WP_000559216.1\|4242087_4242777_+	6-N-hydroxylaminopurine resistance protein	NA	NA	NA	NA
WP_000133449.1\|4242788_4243184_+	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_000580402.1\|4243234_4244608_-	envelope stress sensor histidine kinase CpxA	W8CYF6	Bacillus_phage	7.2e-15	25.6
WP_001033731.1\|4244604_4245303_-	envelope stress response regulator transcription factor CpxR	Q6XM27	Feldmannia_irregularis_virus	5.3e-06	30.3
WP_001233463.1\|4245453_4245954_+	cell-envelope stress modulator CpxP	NA	NA	NA	NA
4245977:4246023	attL	NA	NA	NA	NA
WP_001526255.1\|4246138_4247119_-\|integrase	tyrosine-type recombinase/integrase	S4TP66	Salmonella_phage	2.4e-182	97.9
WP_001017512.1\|4247188_4247482_-	helix-turn-helix transcriptional regulator	Q1JS21	Enterobacteria_phage	4.0e-48	100.0
WP_000453532.1\|4247617_4247890_+	hypothetical protein	Q1JS20	Enterobacteria_phage	5.3e-47	100.0
WP_000217670.1\|4248059_4248560_+	hypothetical protein	M1SV55	Escherichia_phage	2.6e-92	100.0
WP_000557703.1\|4248623_4248848_+	DUF2732 family protein	S4TP68	Salmonella_phage	4.7e-33	100.0
WP_001526254.1\|4248847_4249150_+	DUF5405 family protein	A0A0F7LCL4	Escherichia_phage	5.9e-47	99.0
WP_001113264.1\|4249149_4249374_+	TraR/DksA family transcriptional regulator	S4TRY6	Salmonella_phage	2.9e-35	100.0
WP_000027667.1\|4249370_4249646_+	DUF5405 family protein	Q858T5	Yersinia_virus	3.8e-45	100.0
WP_001526225.1\|4249635_4251915_+	replication endonuclease	Q858T4	Yersinia_virus	0.0e+00	96.7
WP_001526224.1\|4252153_4254637_-	DEAD/DEAH box helicase family protein	NA	NA	NA	NA
WP_000517958.1\|4255016_4256063_-\|portal	phage portal protein	S4TNX7	Salmonella_phage	4.4e-190	99.4
WP_076937928.1\|4256062_4257832_-\|terminase	terminase ATPase subunit family protein	S4TT96	Salmonella_phage	0.0e+00	99.8
WP_001085936.1\|4257997_4258852_+\|capsid	capsid scaffolding protein	S4TP53	Salmonella_phage	8.9e-157	98.6
WP_052894588.1\|4258927_4259995_+\|capsid	phage major capsid protein, P2 family	O80304	Escherichia_phage	3.0e-178	89.5
WP_052894587.1\|4259998_4260748_+\|terminase	terminase endonuclease subunit	Q6K1I5	Salmonella_virus	2.2e-111	86.7
WP_023172566.1\|4260841_4261348_+\|head	head completion/stabilization protein	S4TNY1	Salmonella_phage	9.5e-90	98.2
WP_000868400.1\|4261347_4261551_+\|tail	tail protein X	A0A0M3ULF4	Salmonella_phage	3.6e-32	100.0
WP_000134660.1\|4261554_4261851_+\|holin	phage holin family protein	Q6K1I2	Salmonella_virus	5.8e-47	100.0
WP_072600779.1\|4261837_4262335_+	glycoside hydrolase family 104 protein	S4TUB1	Salmonella_phage	8.4e-91	97.6
WP_072600777.1\|4262331_4262745_+\|lysis	LysB family phage lysis regulatory protein	O80310	Escherichia_phage	3.7e-44	70.8
WP_072105331.1\|4262716_4262890_+\|lysis	phage lysis protein	O80311	Escherichia_phage	1.8e-24	96.5
WP_072600775.1\|4262852_4263320_+\|tail	phage tail protein	A0A218M4K6	Erwinia_phage	4.6e-83	98.7
WP_072600773.1\|4263312_4263762_+	phage virion morphogenesis protein	O80313	Escherichia_phage	1.9e-70	96.0
WP_072600770.1\|4263830_4264472_+\|plate	phage baseplate assembly protein V	Q6K1H6	Salmonella_virus	3.2e-111	96.2
WP_072600768.1\|4264468_4264816_+	GPW/gp25 family protein	O80315	Escherichia_phage	1.5e-54	95.7
WP_024157126.1\|4264822_4265731_+\|plate	baseplate assembly protein	S4TNY7	Salmonella_phage	2.0e-159	98.7
WP_072600765.1\|4265723_4266254_+\|tail	phage tail protein I	A0A0M4R4W9	Salmonella_phage	1.6e-103	99.4
WP_072600763.1\|4266264_4268007_+\|tail	phage tail protein	A0A0M3ULF6	Salmonella_phage	1.4e-270	98.6
WP_072600761.1\|4268006_4268576_+\|tail	tail fiber assembly protein	A0A0M4QWM3	Salmonella_phage	4.4e-104	98.4
WP_001279030.1\|4268710_4269898_+\|tail	phage tail sheath protein	Q6K1H0	Salmonella_virus	2.0e-223	100.0
WP_001207675.1\|4269913_4270432_+\|tail	phage major tail tube protein	S4TNZ0	Salmonella_phage	6.5e-94	100.0
WP_001029727.1\|4270493_4270829_+\|tail	phage tail assembly protein	A0A0M4S5P8	Salmonella_phage	1.8e-52	100.0
WP_085984508.1\|4270825_4270981_+\|tail	GpE family phage tail protein	Q6K1G8	Salmonella_virus	8.8e-23	98.0
WP_072600759.1\|4270973_4273415_+\|tail	phage tail tape measure protein	S4TP64	Salmonella_phage	0.0e+00	98.5
WP_070811924.1\|4273427_4273913_+\|tail	phage tail protein	S4TUC3	Salmonella_phage	2.6e-84	98.8
WP_001526245.1\|4273909_4275079_+	phage late control D family protein	S4TRX8	Salmonella_phage	2.3e-208	96.9
WP_000468311.1\|4275156_4275375_+	DNA-binding transcriptional regulator	S4TNZ3	Salmonella_phage	4.7e-38	100.0
WP_000468356.1\|4275425_4275833_-	hypothetical protein	S4TTB4	Salmonella_phage	1.6e-71	100.0
WP_001077320.1\|4276119_4277022_+	CDF family cation-efflux transporter FieF	NA	NA	NA	NA
4275995:4276041	attR	NA	NA	NA	NA
WP_000591793.1\|4277206_4278169_+	6-phosphofructokinase	NA	NA	NA	NA
WP_000758710.1\|4278372_4279362_+	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_000750756.1\|4279462_4280218_+	CDP-diacylglycerol diphosphatase	NA	NA	NA	NA
WP_000777314.1\|4280480_4281815_+	MFS transporter	NA	NA	NA	NA
WP_000646502.1\|4281825_4282785_+	aminoimidazole riboside kinase	NA	NA	NA	NA
WP_000557882.1\|4282794_4283835_+	ADP-ribosylglycohydrolase family protein	NA	NA	NA	NA
WP_001533426.1\|4283897_4284620_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_000060999.1\|4284717_4284888_+	hypothetical protein	NA	NA	NA	NA
WP_076937929.1\|4285124_4285475_-	cupin domain-containing protein	NA	NA	NA	NA
WP_000113083.1\|4285488_4287081_-	autoinducer-2 kinase	NA	NA	NA	NA
WP_001283049.1\|4287167_4288127_-	transcriptional regulator LsrR	NA	NA	NA	NA
WP_001167248.1\|4288382_4289918_+	autoinducer 2 ABC transporter ATP-binding protein LsrA	A0A2H4PQG7	Staphylococcus_phage	6.3e-20	30.0
WP_000911134.1\|4289911_4290955_+	autoinducer 2 ABC transporter permease LsrC	NA	NA	NA	NA
WP_000981831.1\|4290951_4291953_+	autoinducer 2 ABC transporter permease LsrD	NA	NA	NA	NA
WP_000090742.1\|4291981_4293004_+	autoinducer 2 ABC transporter substrate-binding protein LsrB	NA	NA	NA	NA
WP_000774146.1\|4293032_4293908_+	3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase	NA	NA	NA	NA
WP_001667977.1\|4293990_4294281_+	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase	NA	NA	NA	NA
WP_001088049.1\|4294290_4295055_+	epimerase	NA	NA	NA	NA
WP_001216335.1\|4295146_4295914_-	triose-phosphate isomerase	NA	NA	NA	NA
WP_000802241.1\|4296026_4296623_-	YiiQ family protein	NA	NA	NA	NA
WP_000155237.1\|4296723_4297152_+	DUF805 domain-containing protein	NA	NA	NA	NA
WP_000796303.1\|4297258_4298005_-	ferredoxin--NADP(+) reductase	NA	NA	NA	NA
WP_001250617.1\|4298101_4299112_-	class II fructose-bisphosphatase	NA	NA	NA	NA
WP_000136809.1\|4299223_4300732_-	glycerol kinase GlpK	NA	NA	NA	NA
WP_000084285.1\|4300752_4301598_-	aquaporin	M1HWZ0	Paramecium_bursaria_Chlorella_virus	2.0e-15	28.6
WP_000051370.1\|4301996_4302236_+	septal ring assembly protein ZapB	NA	NA	NA	NA
WP_000872918.1\|4302457_4302943_-	ribonuclease E activity regulator RraA	NA	NA	NA	NA
WP_000139637.1\|4303035_4303965_-	1,4-dihydroxy-2-naphthoate polyprenyltransferase	NA	NA	NA	NA
WP_001293360.1\|4304031_4305363_-	HslU--HslV peptidase ATPase subunit	W6AS21	Erwinia_phage	2.4e-44	28.3
WP_000208240.1\|4305372_4305903_-\|protease	ATP-dependent protease subunit HslV	NA	NA	NA	NA

DBSCAN-SWA_9

4424561 : 4469336

Burkholderia_phage(36.36%)

holin,plate,tail,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001177097.1\|4424561_4425077_-\|tail	tail fiber assembly protein	A0A0U2QV64	Escherichia_phage	3.4e-34	41.2
WP_000368203.1\|4425086_4426568_-\|tail	tail fiber protein	A0A0M3ULF6	Salmonella_phage	1.3e-51	51.7
WP_000359500.1\|4426570_4427203_-\|tail	phage tail protein I	Q6QI98	Burkholderia_phage	6.6e-24	56.4
WP_000951736.1\|4427195_4428311_-\|plate	baseplate J/gp47 family protein	Q6QI99	Burkholderia_phage	1.8e-101	52.2
WP_001093501.1\|4428301_4428661_-	GPW/gp25 family protein	Q6QIA0	Burkholderia_phage	2.8e-35	64.2
WP_001095009.1\|4428824_4430372_-	hypothetical protein	B9UDL6	Salmonella_phage	1.5e-48	29.9
WP_000703628.1\|4430371_4431301_-	glycosyltransferase family 2 protein	S5FKN0	Shigella_phage	7.9e-151	84.1
WP_000593182.1\|4431297_4431660_-	GtrA family protein	I1TED9	Salmonella_phage	1.2e-43	70.8
WP_000679389.1\|4431987_4432710_-\|plate	phage baseplate assembly protein V	A0A067ZIM2	Vibrio_phage	3.9e-12	42.0
WP_000818150.1\|4432719_4433763_-	phage late control D family protein	A4JWL3	Burkholderia_virus	3.8e-77	45.9
WP_001269716.1\|4433750_4433960_-\|tail	tail protein X	A4JWL2	Burkholderia_virus	9.8e-17	60.3
WP_000271425.1\|4433959_4434913_-\|tail	phage tail protein	A4JWL1	Burkholderia_virus	2.3e-36	50.8
WP_001262492.1\|4434912_4437264_-\|tail	phage tail tape measure protein	A4JWL0	Burkholderia_virus	3.4e-65	30.3
WP_001185654.1\|4437360_4437489_-\|tail	GpE family phage tail protein	NA	NA	NA	NA
WP_001003635.1\|4437448_4437766_-\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_000907494.1\|4437817_4438342_-\|tail	phage major tail tube protein	Q6QIA9	Burkholderia_phage	2.8e-68	69.5
WP_000729853.1\|4438341_4439769_-\|tail	phage tail sheath family protein	A4JWK5	Burkholderia_virus	1.4e-194	70.9
WP_000875314.1\|4439758_4439956_-	hypothetical protein	Q6QIB1	Burkholderia_phage	8.6e-07	52.9
WP_000449399.1\|4439952_4440408_-	Gp37 family protein	NA	NA	NA	NA
WP_000777266.1\|4440567_4440882_-	membrane protein	Q6QIC4	Burkholderia_phage	6.4e-20	49.1
WP_001203711.1\|4440894_4441500_-	lytic transglycosylase domain-containing protein	Q5ZQZ1	Pseudomonas_phage	9.3e-60	59.4
WP_001226439.1\|4441502_4441790_-\|holin	putative holin	Q6QIC8	Burkholderia_phage	3.0e-16	48.1
WP_000615248.1\|4442366_4442714_+	DNA-binding protein	Q6QIE8	Burkholderia_phage	4.9e-21	51.5
WP_000136394.1\|4442844_4444194_-	lysine-sensitive aspartokinase 3	NA	NA	NA	NA
WP_000790042.1\|4444538_4446188_+	glucose-6-phosphate isomerase	NA	NA	NA	NA
WP_001541297.1\|4446631_4446874_+	outer membrane protein	NA	NA	NA	NA
WP_123220402.1\|4446907_4447576_+	YjbF family lipoprotein	NA	NA	NA	NA
WP_000977968.1\|4447572_4448310_+	capsule biosynthesis GfcC family protein	NA	NA	NA	NA
WP_000750804.1\|4448309_4450406_+	YjbH domain-containing protein	NA	NA	NA	NA
WP_000982749.1\|4450548_4450959_+	phosphate-starvation-inducible protein PsiE	NA	NA	NA	NA
WP_001252085.1\|4451124_4452015_-	maltose ABC transporter permease MalG	NA	NA	NA	NA
WP_000382573.1\|4452029_4453574_-	maltose ABC transporter permease MalF	NA	NA	NA	NA
WP_000695415.1\|4453705_4454896_-	maltose/maltodextrin ABC transporter substrate-binding protein MalE	NA	NA	NA	NA
WP_072600747.1\|4455256_4456366_+	maltose/maltodextrin ABC transporter ATP-binding protein MalK	Q6GZ03	Mycoplasma_phage	6.2e-17	47.2
WP_000973642.1\|4456454_4457813_+	maltoporin	NA	NA	NA	NA
WP_000782497.1\|4457976_4458894_+	maltose operon protein MalM	NA	NA	NA	NA
WP_000019231.1\|4459074_4459572_+	chorismate lyase	NA	NA	NA	NA
WP_000455249.1\|4459585_4460458_+	4-hydroxybenzoate octaprenyltransferase	NA	NA	NA	NA
WP_000017360.1\|4460556_4462977_-	glycerol-3-phosphate 1-O-acyltransferase PlsB	NA	NA	NA	NA
WP_000002900.1\|4463147_4463516_+	diacylglycerol kinase	NA	NA	NA	NA
WP_000646079.1\|4463624_4464233_+	repressor LexA	Q9G0C2	Lactococcus_phage	1.0e-13	38.0
WP_001128118.1\|4464411_4465737_+	MATE family efflux transporter DinF	NA	NA	NA	NA
WP_001575282.1\|4465733_4465847_+	hypothetical protein	NA	NA	NA	NA
WP_001030592.1\|4465868_4466078_+	CsbD family protein	NA	NA	NA	NA
WP_000416272.1\|4466177_4466693_-	zinc uptake transcriptional repressor Zur	NA	NA	NA	NA
WP_001039337.1\|4466939_4468250_+	conjugal transfer protein TraF	NA	NA	NA	NA
WP_001182219.1\|4468337_4469336_+\|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP019404

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection