CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP019409	Salmonella enterica subsp. enterica serovar Djakarta str. S-1087 chromosome, complete genome	2 crisprs	cas3,DEDDh,DinG,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,c2c9_V-U4,PD-DExK	0	5	11	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP019409_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP019409_1

2935577-2936032

TypeI-E

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRISPRCasFinder
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	PILER-CR

7 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of NZ_CP019409_1

>merge|NZ_CP019409|1|2935577-2936032|CRISPRCasFinder,CRT,PILER-CR
AACGTGTTCCCCGCTGGCGCGGGGAACACGCATTTATCACGCAGACAGCCAGCATTACCGCCGGTTTATCCCCGCTGGCGCGGGGAACACACAATGGCAATGTGGTCAATCCGGGCTGAATCCGGTTTATCCCCGCTGGCGCGGGGAACACCCGGTATTCGCAAAGCCAACGGTTTCCGTTGGCGGTTTATCCCCGCTGGCGCGGGGAACACTCCTGGTCCGCGCTGCTGCGTAAATCAGCTGGCGGTTTATCCCCGCTGGCGCGGGGAACACATGTATTACCACGGTCGCCACGTCGCCCGGACCGGTTTATCCCCGCTGGCGCGGGGAACACTATCAGCCAGAAGATTTATTCACTGAGGCGATCGGTTTATCCCCGCTGGCGCGGGGAACACTGGAGAGCAGGTAACCCCAACTTTGAGGTAATCGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP019409|1|1|2935577-2936032|CRISPRCasFinder
AACGTGTTCCCCGCTGGCGCGGGGAACAC	GCATTTATCACGCAGACAGCCAGCATTACCGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACAATGGCAATGTGGTCAATCCGGGCTGAATC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCGGTATTCGCAAAGCCAACGGTTTCCGTTGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCCTGGTCCGCGCTGCTGCGTAAATCAGCTGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATGTATTACCACGGTCGCCACGTCGCCCGGAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TATCAGCCAGAAGATTTATTCACTGAGGCGAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGGAGAGCAGGTAACCCCAACTTTGAGGTAAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP019409|1|1|2935577-2936032|CRT
AACGTGTTCCCCGCTGGCGCGGGGAACAC	GCATTTATCACGCAGACAGCCAGCATTACCGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACAATGGCAATGTGGTCAATCCGGGCTGAATC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCGGTATTCGCAAAGCCAACGGTTTCCGTTGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCCTGGTCCGCGCTGCTGCGTAAATCAGCTGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATGTATTACCACGGTCGCCACGTCGCCCGGAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TATCAGCCAGAAGATTTATTCACTGAGGCGAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGGAGAGCAGGTAACCCCAACTTTGAGGTAAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP019409|1|1|2935638-2936032|PILER-CR
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACAATGGCAATGTGGTCAATCCGGGCTGAATC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCGGTATTCGCAAAGCCAACGGTTTCCGTTGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCCTGGTCCGCGCTGCTGCGTAAATCAGCTGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATGTATTACCACGGTCGCCACGTCGCCCGGAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TATCAGCCAGAAGATTTATTCACTGAGGCGAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGGAGAGCAGGTAACCCCAACTTTGAGGTAAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019409.1\|WP_076935611.1\|2946552_2947287_-\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NZ_CP019409.1\|WP_076935610.1\|2945511_2946465_+\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
NZ_CP019409.1\|WP_000134249.1\|2928188_2929238_-\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
NZ_CP019409.1\|WP_076935605.1\|2936421_2937342_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NZ_CP019409.1\|WP_000281480.1\|2937338_2937989_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|273869
NZ_CP019409.1\|WP_000490473.1\|2934518_2935565_+\|aminopeptidase	unknown	unknown	gnl\|CDD\|182299
NZ_CP019409.1\|WP_076935603.1\|2927446_2928208_-\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
NZ_CP019409.1\|WP_024154925.1\|2938727_2939786_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|273843
NZ_CP019409.1\|WP_023204590.1\|2936128_2936422_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	pfam09707_cas2_CAS-I-E	gnl\|CDD\|236930
NZ_CP019409.1\|WP_001173663.1\|2931318_2931924_-\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
NZ_CP019409.1\|WP_000372384.1\|2933359_2934268_-\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375
NZ_CP019409.1\|WP_023254081.1\|2931910_2933350_-\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
NZ_CP019409.1\|WP_076935604.1\|2929713_2930424_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
NZ_CP019409.1\|WP_001537530.1\|2930944_2931268_-\|DUF3561-family-protein	unknown	unknown	gnl\|CDD\|371891
NZ_CP019409.1\|WP_076935608.1\|2940356_2941913_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
NZ_CP019409.1\|WP_000517480.1\|2930442_2930754_-\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
NZ_CP019409.1\|WP_076935609.1\|2942407_2945068_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP019409.1\|WP_076935607.1\|2939799_2940360_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
NZ_CP019409.1\|WP_076935606.1\|2937970_2938717_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
NZ_CP019409.1\|WP_001219245.1\|2929234_2929714_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851

Protein	Function_ID	Function_description	E-value
NZ_CP019409.1\|WP_076935611.1\|2946552_2947287_-\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	3.53045e-138
NZ_CP019409.1\|WP_076935610.1\|2945511_2946465_+\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
NZ_CP019409.1\|WP_000134249.1\|2928188_2929238_-\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
NZ_CP019409.1\|WP_076935605.1\|2936421_2937342_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	5.07894e-157
NZ_CP019409.1\|WP_000281480.1\|2937338_2937989_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	1.41953e-75
NZ_CP019409.1\|WP_000490473.1\|2934518_2935565_+\|aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
NZ_CP019409.1\|WP_076935603.1\|2927446_2928208_-\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	5.43378e-146
NZ_CP019409.1\|WP_024154925.1\|2938727_2939786_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	2.43286e-133
NZ_CP019409.1\|WP_023204590.1\|2936128_2936422_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	1.3037e-64
NZ_CP019409.1\|WP_001173663.1\|2931318_2931924_-\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	4.61291e-146
NZ_CP019409.1\|WP_000372384.1\|2933359_2934268_-\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
NZ_CP019409.1\|WP_023254081.1\|2931910_2933350_-\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
NZ_CP019409.1\|WP_076935604.1\|2929713_2930424_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	5.57567e-119
NZ_CP019409.1\|WP_001537530.1\|2930944_2931268_-\|DUF3561-family-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	3.31009e-48
NZ_CP019409.1\|WP_076935608.1\|2940356_2941913_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
NZ_CP019409.1\|WP_000517480.1\|2930442_2930754_-\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	1.08865e-64
NZ_CP019409.1\|WP_076935609.1\|2942407_2945068_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	0
NZ_CP019409.1\|WP_076935607.1\|2939799_2940360_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	8.96644e-33
NZ_CP019409.1\|WP_076935606.1\|2937970_2938717_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	1.09914e-48
NZ_CP019409.1\|WP_001219245.1\|2929234_2929714_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	3.20925e-104

>NZ_CP019409.1|WP_000490473.1|2934518_2935565_+|aminopeptidase
MFSATRRFAVILALGVGFILPAQAASPEPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLDNLIVGDKLYFNSGKNTPEAVRTLTRDRALAIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS
>NZ_CP019409.1|WP_000372384.1|2933359_2934268_-|sulfate-adenylyltransferase-subunit-CysD
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF
>NZ_CP019409.1|WP_023254081.1|2931910_2933350_-|sulfate-adenylyltransferase-subunit-CysN
MNTILAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTLQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYREETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSANMRWYSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNLDFRGYAGTLASGSVKVGERIKVLPSGVESSVARIVTFDGDKEEACAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMAEQPLAPGQSYDVKLAGKKTRARIEAIRYQVDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVRELDERGATPPVEYSAFELELNALVRRHFPHWDARDLLGDKHGAA
>NZ_CP019409.1|WP_001173663.1|2931318_2931924_-|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVAAREQLHGHRGVVLWFTGLSGSGKSTVAGALEEALHQRGVSTYLLDGDNVRHGLCRDLGFSDADRQENIRRVGEVASLMADAGLIVLTAFISPHRAERQLVKERVGHDRFIEIYVNTPLAICEQRDPKGLYKKARAGELRNFTGIDAIYEAPDSPQVHLNGEQLVTNLVSQLLDLLRRRDIIRS
>NZ_CP019409.1|WP_001537530.1|2930944_2931268_-|DUF3561-family-protein
MRNSHNITFTRSDAFMVDDDATSAFPGAVVGFVSWLLALGIPFLLYGPNTLFFFLYTWPFFLALMPVSVIIGIALHLLVKGKILFSIMFTLLAVGALFGALFIWLLG
>NZ_CP019409.1|WP_000517480.1|2930442_2930754_-|cell-division-protein-FtsB
MGKLTLLLLALLVWLQYSLWFGKNGIHDYSRVNDDVVAQQATNAKLKARNDQLFAEIDDLNGGQEAIEERARNELSMTKPGETFYRLVPDASKRAATAGQTHR
>NZ_CP019409.1|WP_076935604.1|2929713_2930424_-|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MAATLLDVCAVVPAAGFGRRMQTECPKQYLSIGNKTILEHSVHALLAHPRVTHVVIAISPGDHRFAQLPLANHPQITVVDGGNERADSVLAGLQAVAKAQWVLVHDAARPCLHQDDLARLLTISENSRVGGILASPVRDTMKRGEPGKNAIAHTVERADLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPALVEGRADNIKVTRPEDLALAEFYLTRTIHQEKA
>NZ_CP019409.1|WP_001219245.1|2929234_2929714_-|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDEVNVKATTTEKLGFTGRGEGIACEAVALLMKAAK
>NZ_CP019409.1|WP_000134249.1|2928188_2929238_-|tRNA-pseudouridine(13)-synthase-TruD
MTEFDNLTWLHGKPQGSGLLKANPEDFVVVEDLGFTPDGEGEHILLRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDFSAFQLEGCKVLEYARHKRKLRLGALKGNAFTLVLREISDRRDVETRLQAIRDSGVPNYFGAQRFGIGGSNLQGALRWAQSNAPVRDRNKRSFWLSAARSALFNQIVHQRLKKPDFNQVVDGDALQLAGRGSWFVATSEELPELQRRVDEKELMITASLPGSGEWGTQRAALAFEQDAIAQETVLQSLLLREKVEASRRAMLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVVRELINTMGDYAHIAE
>NZ_CP019409.1|WP_076935603.1|2927446_2928208_-|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLNGYQHYDTAAAVTCALLRGLSREPLRTGRILNVNVPDIPLAQVKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVDEGYVSVTPLHVDLTAHSAHDVVSDWLDSVGVGTQW
>NZ_CP019409.1|WP_023204590.1|2936128_2936422_-|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMVVVVTENVPPRLRGRLAVWLLEVRAGVYVGDTSKRIREMIWQQITQLGGCGNAVMAWATNTESGFEFQTWGENRRIPVDLDGLRLVSFLPVENQ
>NZ_CP019409.1|WP_076935605.1|2936421_2937342_-|type-I-E-CRISPR-associated-endonuclease-Cas1
MTFVPLNPIPLKDRTSMIFLQYGQIDVLDGAFVLIDKTGIRTHIPVGSVACIMLEPGTRVSHAAVRLASTVGTLLVWVGEAGVRVYSSGQPGGARADKLLYQAKLALDDDLRLKVVRKMYELRFREPPPVRRSVEQLRGIEGSRVRAIYALLAKQYGVKWHGRNYDPKDWEKGDVVNRCISAATSCLYGISEAAILAAGYAPAIGFIHSGKPLSFVYDIADIIKFESVVPKAFEIAARHPAEPDKEVRLACRDIFRSSKLTGKLIPLIEEVLAAGEIEPPQPAPDMLPPAIPEPESLGDSGHRGHG
>NZ_CP019409.1|WP_000281480.1|2937338_2937989_-|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRITLHTSELSPAQLLHLVERGEYVMHQWLWDLFPGGKERQFLYRREELQGAFRFFVLSQEQPAASAIFDVQTRPFAPTLSAGQTLRFNLRANPTICKNGKRHDLLMEAKRQRKTQGDSQDIWSYQQQAALEWLVRQGEQNGFTLREASVDAYRQQQIRREKSRQMIQFSSVDYTGVLVINDPALFLQRLAQGYGKSRAFGCGMMMIKPGEDA
>NZ_CP019409.1|WP_076935606.1|2937970_2938717_-|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSQYLVFQLHGPMASWGVDAPGEVRHSHKLPSRSALLGLLAAALGIRRDEEERLNAFNRHYQFLLCASGNPRWARDYHTVQMPKEVRKARYFSRREELQDPELLSALISRRDYYTDAWWMIAVSATPDAPYTLAQLQAALQHPVFPLYLGRKSHPLALPLAPQLLEGRAPDALREAYRQYQDKFNALRLPLPKLQNECWWEGEHDGLTANKILRRRDMPLSRQQWLFGERSVNQGPWLSKEDACISQE
>NZ_CP019409.1|WP_024154925.1|2938727_2939786_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPASNLNRDDTGAPKTVVLGGATRLRISSQSLKRAWRTSELFEQALAGNIGIRSGRIAREAAQILVESGIDAKKAVEYVKNIANCFGKVKEDKKPKDELTNAETEQLVHISPAEFEAVKALARRLAEEKRPATEEEAELLRHDRMAVDIAMFGRMLAKKTDFNVEAACQVAHAFGVSETIVEDDFFTAVDDLRQASAEDAGAGHLGETGFGSALFYTYICIDKDLLVKNLNGNEELANKTLRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTDQLNVAVKRITSLHKNMNKVYGQRTDTASFDVMNQQGSMKDVLDFICA
>NZ_CP019409.1|WP_076935607.1|2939799_2940360_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSIVQEDHKATLRKWHEDLQEKRGARASLRRSKTVNEACLSEGFHLLLMQTHSLWKNKAAWHVTALAITAVLAAHIKFIDERQSFATQLGQKKSGDNPVMSKLRFSRLSAVKTPDELLRQLRRAVQLLDGSVNLISLADDIFRWCQEQDDLLSHHRRQQRPTEFLRIRWALEYYQAGDDDIDNEQD
>NZ_CP019409.1|WP_076935608.1|2940356_2941913_-|type-I-E-CRISPR-associated-protein-Cse1/CasA
MFPINLLTTPWLPVRFKNGSTGKLAPVDLADENVVDIAATRADLQGAAWQFLLGLLQCSIAPKRYKNWEDIWFDGLHADALHKALAPLEHAFQFGAETPSFMQDFEPLTGEKVSIASLLPEIPGAQTTKFNKDHFIKRGVTERFCPHCAALALFSLQLNAPAGGKGYRTGLRGGGPLTTLVELQEYQGERQTPLWRKLWLNVMPQDVADLPLSDQCDAAVFPWLAATRTSEQANAVTTPEQVNKLQAYWGMPRRIRLDFATLQTGCCDICGAESDELLGFMTVKNYGVNYDGWRHPLTPYRAPVKDQNAFFSVKPQPGGLIWRDWLGLSQNNHTEANYESPAQVVKVFNARRLRDVKAGVWGFGADFDNMKIRCWYEHHFPLLMTEGLIPDLRKATQTATRLLSLLRGALKEAWFANAKDARGDFSFIDIDFWNLTQGRFLNLIHDLENGQKPDERLNKWQRELWLFTRCYFDDHVFTNPYESSDLERIMKARKKYFTSSAEKQSAKAAKAKKQEAAE
>NZ_CP019409.1|WP_076935609.1|2942407_2945068_-|CRISPR-associated-helicase/endonuclease-Cas3
MSIYHYWGKSRRGEIDGGDDYHLLCWHSLDVAAVGYWMVINNIYFIDHYLKKLGIQDKEQAAQFFAWILCWHDIGKFAHSFQQLYRHEALNVFNEPTRHYEKIAHTTLGYVLWNSWLSECPELFPPSSLSVRKSKRVMALWMPVTTGHHGRPPEAIQELDHFRQQDKDAARDFLLRIKALFPLITLPEAWDEDEGIDQFQQLSWFISAAVVLADWTGSASRYFPRTAEKMPVDTYWQQALAKAQTAITLFPSAANVSAFTGIETLFPFIQHPTPLQQKALELDINVDGAQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLYFGLPTMATANAMFERMANTWLALYQPDSRPSLILAHSARRLMDRFNQSIWSVTLSGTEEPDEAQPDSQGCAAWFADSNKKALLAEVGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAWMSRILEGLIERQASNGNATILLSATLSQQQRDKLVAAFSRGVRRSVQAPLLGHDDYPWLTQVTQTELISQRVDTHKEVERSVDIGWLHSEEACLERIGEAVEKGNCIAWIRNSVDDAIRIYRQLQLSKVVATENLLLFHSRFAFHDRQRIESQTLNLFGKQSGAQRAGKVIIATQVIEQSLDIDCDEMISDLAPVDLLIQRAGRLQRHIRDRNGLVKKSGQDERETPVLRILAPEWDDAPRENWLSSAMRNSAYVYPDHGRMWLTQRILREQGTIRMPQSARLLIESVYGEDVNMPVGFAKNEQLQKGKFYCDRAFARQMLLNFAPGYCAEISDSLPEKMSTRLAEESVTLWLAKIVDGVVTPYASGEHAWEMSVLRVRQSWWDKHKGEFERLKGESFQQWCVEQHQNKDFAIVIVVTDSAACGYSANEGLTGKME
>NZ_CP019409.1|WP_076935610.1|2945511_2946465_+|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSVDKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTMISQSNIKDILNISDDTVIESMSREERQLFLQICEVIGSKMTWHPELLQESISTLRKEVTGNAQIKATVYEMMRPAEAPDHPLVEWQDSLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFAEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLT
>NZ_CP019409.1|WP_076935611.1|2946552_2947287_-|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVLALAETNAQLETLTAEERVAWALENLPSEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG

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Crispr_ID: NZ_CP019409_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP019409_2

2952657-2953234

TypeI-E

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRISPRCasFinder
CGGTTTATCCCCGCTGNCGCGGGGAACAC	CRT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	PILER-CR

9 spacers

cas3,cas8e,cse2gr11,cas7

The CRISPR arrays of NZ_CP019409_2

>merge|NZ_CP019409|2|2952657-2953234|CRISPRCasFinder,CRT,PILER-CR
ACGGCTATCCCCGCTGACGCGGGGAACACTCTTTATCAGCTAACCATTTCCAGAACTCGTCCGGTTTATCCCCGCTGACGCGGGGAACACTAATTGCTCCTGATCCATTGTGGTTGTGGCAACGGTTTATCCCCGCTGACGCGGGGAACACGCGAGCGTTTTGGGTGGCACAAAATCCCCGAGCGGTTTATCCCCGCTGACGCGGGGAACACGCGAGCGTTTTGGGTGGCACAAAATCCCCGAGCGGTTTATCCCCGCTGACGCGGGGAACACAGTGCCGATGCGCGGTATCTGGGGAATTTCGCCGGTTTATCCCCGCTGGCGCGGGGAACACTGTATTATTCTGACCAGTGCGCTGCGCATCAGCGGTTTATCCCCGCTGGCGCGGGGAACTCCGTCGCTGTACTGCCTGACAATGCGGCATAATCGGTTTATCCCCGCTGGCGCGGGGAACACACGAGCGCGGAGTAAAAGATCGGATATATGAGCGGTTTATCCCCGCTGGCGCGGGGAACACTTAGATAGTTCAGCGCTCAATAGGTGCCCTTCCGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP019409|2|2|2952657-2953234|CRISPRCasFinder
ACGGCTATCCCCGCTGACGCGGGGAACAC	TCTTTATCAGCTAACCATTTCCAGAACTCGTC
CGGTTTATCCCCGCTGACGCGGGGAACAC	TAATTGCTCCTGATCCATTGTGGTTGTGGCAA
CGGTTTATCCCCGCTGACGCGGGGAACAC	GCGAGCGTTTTGGGTGGCACAAAATCCCCGAG
CGGTTTATCCCCGCTGACGCGGGGAACAC	GCGAGCGTTTTGGGTGGCACAAAATCCCCGAG
CGGTTTATCCCCGCTGACGCGGGGAACAC	AGTGCCGATGCGCGGTATCTGGGGAATTTCGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGTATTATTCTGACCAGTGCGCTGCGCATCAG
CGGTTTATCCCCGCTGGCGCGGGGAACTC	CGTCGCTGTACTGCCTGACAATGCGGCATAAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACGAGCGCGGAGTAAAAGATCGGATATATGAG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTAGATAGTTCAGCGCTCAATAGGTGCCCTTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP019409|2|2|2952657-2953234|CRT
ACGGCTATCCCCGCTGACGCGGGGAACAC	TCTTTATCAGCTAACCATTTCCAGAACTCGTC
CGGTTTATCCCCGCTGACGCGGGGAACAC	TAATTGCTCCTGATCCATTGTGGTTGTGGCAA
CGGTTTATCCCCGCTGACGCGGGGAACAC	GCGAGCGTTTTGGGTGGCACAAAATCCCCGAG
CGGTTTATCCCCGCTGACGCGGGGAACAC	GCGAGCGTTTTGGGTGGCACAAAATCCCCGAG
CGGTTTATCCCCGCTGACGCGGGGAACAC	AGTGCCGATGCGCGGTATCTGGGGAATTTCGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGTATTATTCTGACCAGTGCGCTGCGCATCAG
CGGTTTATCCCCGCTGGCGCGGGGAACTC	CGTCGCTGTACTGCCTGACAATGCGGCATAAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACGAGCGCGGAGTAAAAGATCGGATATATGAG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTAGATAGTTCAGCGCTCAATAGGTGCCCTTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP019409|2|2|2952718-2953234|PILER-CR
CGGTTTATCCCCGCTGACGCGGGGAACAC	TAATTGCTCCTGATCCATTGTGGTTGTGGCAA
CGGTTTATCCCCGCTGACGCGGGGAACAC	GCGAGCGTTTTGGGTGGCACAAAATCCCCGAG
CGGTTTATCCCCGCTGACGCGGGGAACAC	GCGAGCGTTTTGGGTGGCACAAAATCCCCGAG
CGGTTTATCCCCGCTGACGCGGGGAACAC	AGTGCCGATGCGCGGTATCTGGGGAATTTCGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGTATTATTCTGACCAGTGCGCTGCGCATCAG
CGGTTTATCCCCGCTGGCGCGGGGAACTC	CGTCGCTGTACTGCCTGACAATGCGGCATAAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACGAGCGCGGAGTAAAAGATCGGATATATGAG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTAGATAGTTCAGCGCTCAATAGGTGCCCTTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019409.1\|WP_076935610.1\|2945511_2946465_+\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
NZ_CP019409.1\|WP_000210864.1\|2955718_2957356_-\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437
NZ_CP019409.1\|WP_001199956.1\|2953530_2954202_-\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
NZ_CP019409.1\|WP_076935607.1\|2939799_2940360_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
NZ_CP019409.1\|WP_000036734.1\|2954337_2955636_-\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NZ_CP019409.1\|WP_000108312.1\|2951309_2951672_+\|6-carboxytetrahydropterin-synthase-QueD	unknown	unknown	gnl\|CDD\|238264
NZ_CP019409.1\|WP_072196359.1\|2959401_2959758_-\|type-II-toxin-antitoxin-system-ParD-family-antitoxin	unknown	unknown	gnl\|CDD\|226136
NZ_CP019409.1\|WP_024154925.1\|2938727_2939786_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|273843
NZ_CP019409.1\|WP_058331859.1\|2962128_2963424_-\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|237291
NZ_CP019409.1\|WP_000186399.1\|2963481_2966238_+\|two-component-sensor-histidine-kinase-BarA	unknown	unknown	gnl\|CDD\|236848
NZ_CP019409.1\|WP_000226841.1\|2959842_2962077_-\|GTP-diphosphokinase	unknown	unknown	gnl\|CDD\|182797
NZ_CP019409.1\|WP_076935611.1\|2946552_2947287_-\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NZ_CP019409.1\|WP_076935614.1\|2966281_2967424_-\|glycerate-kinase	unknown	unknown	gnl\|CDD\|224840
NZ_CP019409.1\|WP_076935608.1\|2940356_2941913_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
NZ_CP019409.1\|WP_001630614.1\|2951761_2952559_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|224158
NZ_CP019409.1\|WP_076935609.1\|2942407_2945068_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP019409.1\|WP_000107112.1\|2967501_2968842_-\|glucarate-dehydratase	unknown	unknown	gnl\|CDD\|211799
NZ_CP019409.1\|WP_024798191.1\|2957583_2958384_-\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
NZ_CP019409.1\|WP_076935612.1\|2947362_2949075_-\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
NZ_CP019409.1\|WP_076935613.1\|2949074_2950874_-\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|182862

Protein	Function_ID	Function_description	E-value
NZ_CP019409.1\|WP_076935610.1\|2945511_2946465_+\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
NZ_CP019409.1\|WP_000210864.1\|2955718_2957356_-\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NZ_CP019409.1\|WP_001199956.1\|2953530_2954202_-\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	2.27998e-154
NZ_CP019409.1\|WP_076935607.1\|2939799_2940360_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	8.96644e-33
NZ_CP019409.1\|WP_000036734.1\|2954337_2955636_-\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NZ_CP019409.1\|WP_000108312.1\|2951309_2951672_+\|6-carboxytetrahydropterin-synthase-QueD	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	2.66978e-58
NZ_CP019409.1\|WP_072196359.1\|2959401_2959758_-\|type-II-toxin-antitoxin-system-ParD-family-antitoxin	gnl\|CDD\|226136	COG3609, COG3609, Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain [Transcription].	1.09987e-19
NZ_CP019409.1\|WP_024154925.1\|2938727_2939786_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	2.43286e-133
NZ_CP019409.1\|WP_058331859.1\|2962128_2963424_-\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|237291	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD.	0
NZ_CP019409.1\|WP_000186399.1\|2963481_2966238_+\|two-component-sensor-histidine-kinase-BarA	gnl\|CDD\|236848	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional.	0
NZ_CP019409.1\|WP_000226841.1\|2959842_2962077_-\|GTP-diphosphokinase	gnl\|CDD\|182797	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional.	0
NZ_CP019409.1\|WP_076935611.1\|2946552_2947287_-\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	3.53045e-138
NZ_CP019409.1\|WP_076935614.1\|2966281_2967424_-\|glycerate-kinase	gnl\|CDD\|224840	COG1929, COG1929, Glycerate kinase [Carbohydrate transport and metabolism].	0
NZ_CP019409.1\|WP_076935608.1\|2940356_2941913_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
NZ_CP019409.1\|WP_001630614.1\|2951761_2952559_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|224158	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only].	1.39442e-102
NZ_CP019409.1\|WP_076935609.1\|2942407_2945068_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	0
NZ_CP019409.1\|WP_000107112.1\|2967501_2968842_-\|glucarate-dehydratase	gnl\|CDD\|211799	TIGR03247, glucar-dehydr, glucarate dehydratase. Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (GenProp0716). The E. coli enzyme has been well-characterized.	0
NZ_CP019409.1\|WP_024798191.1\|2957583_2958384_-\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	6.27912e-160
NZ_CP019409.1\|WP_076935612.1\|2947362_2949075_-\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
NZ_CP019409.1\|WP_076935613.1\|2949074_2950874_-\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0

>NZ_CP019409.1|WP_001630614.1|2951761_2952559_-|MBL-fold-metallo-hydrolase
MALRIRVLLENHKGAGADKSLKARPGLSLLVEDESTSILFDTGPDGSFMQNASAMGIDLSDVSAVVLSHGHYDHCGGVPWLPDNSRIICHPDIARERYAAMTFLGITRKIKKLSREVDYSRYRMMYTRDPLPIGENFIWSGEIPVVAPEAYGIFGGHDAEPDSILDEGVLIYQSAKGLVIITGCGHRGIANIVRHCQNITGIKRIYALVGGFHLRCASPFTMWRVRRFLQEHKPEKLCGCHCTGAWGRLWLPEITAPATGDVLRF
>NZ_CP019409.1|WP_000108312.1|2951309_2951672_+|6-carboxytetrahydropterin-synthase-QueD
MSTTLYKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFADLKAAFKPTYDRLDHYYLNDIPGLSNPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCIYRGE
>NZ_CP019409.1|WP_076935613.1|2949074_2950874_-|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit
MTTPAPLTGLLPLNPEQLARLQAATTDLTPEQLAWVSGYFWGVLNPRSGAVAVTPAPEGKMPGVTLISASQTGNARRVAEALRDDLLAANLNVTLVNAGDYKFKQIASEKLLVIVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDVLKSRAPVAAPSQSVATGAVNDIHTSPYTKDAPLTATLAVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPDLVKELVELLWLKGDEPVTVDGKTLPLAEALEWHFELTVNTANIVENYATLTRSESLLPLVGDKALLQQYAATTPIVDMVRFSPAQLDAQVLIDLLRPLTPRLYSIASAQAEVESEVHITVGVVRYDIEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPQTPVIMIGPGTGIAPFRAFMQQRAAEGAEGKNWLFFGNPHFTEDFLYQVEWQRYVKEGLLSRIDLAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDARRMAADVEKALLEVIAEFGGMDLESADEYLSELRVERRYQRDVY
>NZ_CP019409.1|WP_076935612.1|2947362_2949075_-|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLALAEAVVTTQRDWGNRTDRKNAKTKYTLERVGLETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDNNWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQKVKIETLARDHGLMNAVSAQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRVMLAEIGLVGKAPGRYNLHLGGNRIGSRIPRMYQENITEPDILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>NZ_CP019409.1|WP_076935611.1|2946552_2947287_-|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVLALAETNAQLETLTAEERVAWALENLPSEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>NZ_CP019409.1|WP_076935610.1|2945511_2946465_+|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSVDKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTMISQSNIKDILNISDDTVIESMSREERQLFLQICEVIGSKMTWHPELLQESISTLRKEVTGNAQIKATVYEMMRPAEAPDHPLVEWQDSLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFAEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLT
>NZ_CP019409.1|WP_076935609.1|2942407_2945068_-|CRISPR-associated-helicase/endonuclease-Cas3
MSIYHYWGKSRRGEIDGGDDYHLLCWHSLDVAAVGYWMVINNIYFIDHYLKKLGIQDKEQAAQFFAWILCWHDIGKFAHSFQQLYRHEALNVFNEPTRHYEKIAHTTLGYVLWNSWLSECPELFPPSSLSVRKSKRVMALWMPVTTGHHGRPPEAIQELDHFRQQDKDAARDFLLRIKALFPLITLPEAWDEDEGIDQFQQLSWFISAAVVLADWTGSASRYFPRTAEKMPVDTYWQQALAKAQTAITLFPSAANVSAFTGIETLFPFIQHPTPLQQKALELDINVDGAQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLYFGLPTMATANAMFERMANTWLALYQPDSRPSLILAHSARRLMDRFNQSIWSVTLSGTEEPDEAQPDSQGCAAWFADSNKKALLAEVGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAWMSRILEGLIERQASNGNATILLSATLSQQQRDKLVAAFSRGVRRSVQAPLLGHDDYPWLTQVTQTELISQRVDTHKEVERSVDIGWLHSEEACLERIGEAVEKGNCIAWIRNSVDDAIRIYRQLQLSKVVATENLLLFHSRFAFHDRQRIESQTLNLFGKQSGAQRAGKVIIATQVIEQSLDIDCDEMISDLAPVDLLIQRAGRLQRHIRDRNGLVKKSGQDERETPVLRILAPEWDDAPRENWLSSAMRNSAYVYPDHGRMWLTQRILREQGTIRMPQSARLLIESVYGEDVNMPVGFAKNEQLQKGKFYCDRAFARQMLLNFAPGYCAEISDSLPEKMSTRLAEESVTLWLAKIVDGVVTPYASGEHAWEMSVLRVRQSWWDKHKGEFERLKGESFQQWCVEQHQNKDFAIVIVVTDSAACGYSANEGLTGKME
>NZ_CP019409.1|WP_076935608.1|2940356_2941913_-|type-I-E-CRISPR-associated-protein-Cse1/CasA
MFPINLLTTPWLPVRFKNGSTGKLAPVDLADENVVDIAATRADLQGAAWQFLLGLLQCSIAPKRYKNWEDIWFDGLHADALHKALAPLEHAFQFGAETPSFMQDFEPLTGEKVSIASLLPEIPGAQTTKFNKDHFIKRGVTERFCPHCAALALFSLQLNAPAGGKGYRTGLRGGGPLTTLVELQEYQGERQTPLWRKLWLNVMPQDVADLPLSDQCDAAVFPWLAATRTSEQANAVTTPEQVNKLQAYWGMPRRIRLDFATLQTGCCDICGAESDELLGFMTVKNYGVNYDGWRHPLTPYRAPVKDQNAFFSVKPQPGGLIWRDWLGLSQNNHTEANYESPAQVVKVFNARRLRDVKAGVWGFGADFDNMKIRCWYEHHFPLLMTEGLIPDLRKATQTATRLLSLLRGALKEAWFANAKDARGDFSFIDIDFWNLTQGRFLNLIHDLENGQKPDERLNKWQRELWLFTRCYFDDHVFTNPYESSDLERIMKARKKYFTSSAEKQSAKAAKAKKQEAAE
>NZ_CP019409.1|WP_076935607.1|2939799_2940360_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSIVQEDHKATLRKWHEDLQEKRGARASLRRSKTVNEACLSEGFHLLLMQTHSLWKNKAAWHVTALAITAVLAAHIKFIDERQSFATQLGQKKSGDNPVMSKLRFSRLSAVKTPDELLRQLRRAVQLLDGSVNLISLADDIFRWCQEQDDLLSHHRRQQRPTEFLRIRWALEYYQAGDDDIDNEQD
>NZ_CP019409.1|WP_024154925.1|2938727_2939786_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPASNLNRDDTGAPKTVVLGGATRLRISSQSLKRAWRTSELFEQALAGNIGIRSGRIAREAAQILVESGIDAKKAVEYVKNIANCFGKVKEDKKPKDELTNAETEQLVHISPAEFEAVKALARRLAEEKRPATEEEAELLRHDRMAVDIAMFGRMLAKKTDFNVEAACQVAHAFGVSETIVEDDFFTAVDDLRQASAEDAGAGHLGETGFGSALFYTYICIDKDLLVKNLNGNEELANKTLRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTDQLNVAVKRITSLHKNMNKVYGQRTDTASFDVMNQQGSMKDVLDFICA
>NZ_CP019409.1|WP_001199956.1|2953530_2954202_-|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILAKTKESDKWGAASSEDLLAVINRQDYTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA
>NZ_CP019409.1|WP_000036734.1|2954337_2955636_-|phosphopyruvate-hydratase
MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVGAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTENKSNFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKGKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>NZ_CP019409.1|WP_000210864.1|2955718_2957356_-|CTP-synthase-(glutamine-hydrolyzing)
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQLAVDIGREHALFMHLTLVPYLAAAGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISMKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIYEEANPAGEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVTVNIKLIDSQDVETRGVEILKDLDAILIPGGFGYRGVEGKIATARYARENNIPYLGICLGMQVALIEFARNVAGMDNANSTEFVPDCKYPVVALITEWRDEDGNVEVRSEKSDLGGTMRLGAQQCQLSDDSLVRQLYGASTIVERHRHRYEVNNMLLKQIEAAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAASEHQKRQAK
>NZ_CP019409.1|WP_024798191.1|2957583_2958384_-|nucleoside-triphosphate-pyrophosphohydrolase
MTTNYQIDRLLTLMQRLRDPENGCPWDKEQTFASIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFGELSADNSEEVLARWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCSNVGFDWTTLGPVVDKVYEEIDEVMFEARQAVVDQAKLEEEMGDLLFATVNMARHLGTKAELALQKANDKFERRFREVERIVAARGLEMTGVDLETMEEVWQEVKRQEIDL
>NZ_CP019409.1|WP_072196359.1|2959401_2959758_-|type-II-toxin-antitoxin-system-ParD-family-antitoxin
MFLTYISFPVYSYVRFILTVEAVMARTMTVDLGDELREFIESLIESGDYRTQSEVIRESLRLLREKQAESRLLALRELLAEGLNSGEPQAWEKDAFLRKVKTGMIKPDENGKINAKGQ
>NZ_CP019409.1|WP_000226841.1|2959842_2962077_-|GTP-diphosphokinase
MVAVRSAHINKAGEFDPKKWIASLGISSQQSCERLAETWAYCLQQTQGHPDADLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSIVTLIHGVRDMAAIRQLNATHNDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKEAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPAEYKRIAKLLHERRLDREHYIEEFVGHLRAEMKNEGVQAEVYGRPKHIYSIWRKMQKKHLAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAHWKYKEGAASGGVRSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQVEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNILAGRQILDDELAHLGISLKEAEKHLLPRYNFNELEELLAAIGGGDIRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKTYAPQNRRKDDGRVVVEGVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPERIVEAVWGESYSAGYSLVVRVQANDRSGLLRDITTILANEKVNVLGVASRSDIKQQIATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLHGG
>NZ_CP019409.1|WP_058331859.1|2962128_2963424_-|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MAQFYSAKRRVTTRQIITVKVNDLDSFGQGVARHNGKALFIPGLLPEESAEVIITEDKKQFARARVSRRLNDSPERETPRCPHFGVCGGCQQQHVSIALQQRSKSAALARLMKHEVNDIIAGAPWGYRRRARLSLNCPPDKPLQMGFRKAGSSDIVNVEQCPVLAPRLEALLPRIRACLASLHGTRHLGHVELVQAGSGTLMILRHTAPLSAADKEKLERFSHSEGLSLFLAPFSEILETVSGEAPWYDSHGLRLAFSPRDFIQVNEVVNQQMVARALEWLDVRAEDRVLDLFCGMGNFTLPLATHAASVVGVEGVPALVEKGRENAIRNGLHNVTFFHENLEEDVTKQPWAKNGFDKVLLDPARAGATGVMRHIIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLESMVLFERM
>NZ_CP019409.1|WP_000186399.1|2963481_2966238_+|two-component-sensor-histidine-kinase-BarA
MTNYSLRARMMILILAPTVLIGLLLSIFFVVHRYNDLQRQLEDAGASIIEPLAVSSEYGMNLQNRESIGQLISVLHRRHSDIVRAISVYDDHNRLFVTSNFHLDPSQMQLPAGAPFPRRLSVDRHGDIMILRTPIISESYSPDESAIADAKNTKNMLGYVALELDLKSVRLQQYKEIFISSVMMLFCIGIALIFGWRLMRDVTGPIRNMVNTVDRIRRGQLDSRVEGFMLGELDMLKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNVIGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNVIIDGPSTACLAGKRLAYVEPNATAAQCTLDLLSDTPVEVVYSPTFSALPLAHYDIMILSVPVTFREPLTMQHERLAKAASMTDFLLLALPCHAQINAEKLKQGGAAACLLKPLTSTRLLPALTEYCQLNHHPEPLLMDTSKITMTVMAVDDNPANLKLIGALLEDKVQHVELCDSGHQAVDRAKQMQFDLILMDIQMPDMDGIRACELIHQLPHQQQTPVIAVTAHAMAGQKEKLLSAGMNDYLAKPIEEEKLHNLLLRYKPGANVAARLMAPEPAEFIFNPNATLDWQLALRQAAGKPDLARDMLQMLIDFLPEVRNKIEEQLVGENPNGLVDLIHKLHGSCGYSGVPRMKNLCQLIEQQLRSGVHEEELEPEFLELLDEMDNVAREAKKILG
>NZ_CP019409.1|WP_076935614.1|2966281_2967424_-|glycerate-kinase
MKIVIAPDSYKESLSALEVATAIEQGFREIWPDADYLKLPLADGGEGTVEAMVEATAGRIVHVEVTGPLGHRVNAFYGLSGDARSAFIEMAAASGLEQVPPAQRDPLKTTSWGTGELIRHALDVGVEHIIIGIGGSATNDGGAGMVQALGARLRDAQGNDIAQGGIGLETLASIDISGLDKRLSACHIEVACDVTNPLTGKEGASAVFGPQKGATPEMIERLDTALTRYAHLIARDLHVDVLDLTGGGAAGGMGAALYAFCGAQLRRGIEIVTDALHLEACLADADLVITGEGRIDSQTIHGKVPIGVANIAKRYNKPVIGIAGSLTADVGVVHEHGLDAVFSVIYTICTLEDALKNASENVRMTARNVAATLKAGQQLR
>NZ_CP019409.1|WP_000107112.1|2967501_2968842_-|glucarate-dehydratase
MSTQFTTPVVTEMQVIPVAGHDSMLMNLSGAHAPFFTRNIVIIKDNSGHTGVGEIPGGEKIRKTLEDAIPLVVGKTLGEYKNVLTAVRNQFADRDAGGRGLQTFDLRTTIHVVTGIEAAMLDLLGQHLGVNVASLLGDGQQRSEVEMLGYLFFVGNRKATPLPYQSQPDEQCDWYRLRHEEAMTPETVVRLAEAAYEKYGFNDFKLKGGVLAGEEEAESIVALAKRFPQARVTLDPNGAWSLNEAISIGKYLKGSLAYAEDPCGAEQGFSGREVMAEFRRATGLPTATNMIATDWRQMGHTLSLQSVDIPLADPHFWTMQGSVRVAQMCHEFGLTWGSHSNNHFDISLAMFTHVAAAAPGKITAIDTHWIWQEGNQRLTKEPFEIKGGMVQVPAKPGLGVELDMDQVMKAHELYQKHGLGARDDAMGMQYLIPGWTFDNKRPCMVR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP019409_1	1.1\|2935606\|32\|NZ_CP019409\|CRISPRCasFinder,CRT	2935606-2935637	32	MT230534	Pantoea phage vB_PagM_SSEM1, complete genome	11518-11549	6	0.812
NZ_CP019409_2	2.6\|2952991\|32\|NZ_CP019409\|CRISPRCasFinder,CRT,PILER-CR	2952991-2953022	32	NZ_AF135182	Serratia entomophila strain A1MO2 plasmid pADAP, complete sequence	61085-61116	7	0.781
NZ_CP019409_2	2.6\|2952991\|32\|NZ_CP019409\|CRISPRCasFinder,CRT,PILER-CR	2952991-2953022	32	NC_002523	Serratia entomophila plasmid pADAP, complete sequence	61085-61116	7	0.781
NZ_CP019409_1	1.4\|2935789\|32\|NZ_CP019409\|CRISPRCasFinder,CRT,PILER-CR	2935789-2935820	32	KM659096	Paracoccus yeei plasmid pLM20P4, complete sequence	16767-16798	9	0.719
NZ_CP019409_1	1.5\|2935850\|32\|NZ_CP019409\|CRISPRCasFinder,CRT,PILER-CR	2935850-2935881	32	NZ_CP032346	Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence	468937-468968	9	0.719
NZ_CP019409_1	1.1\|2935606\|32\|NZ_CP019409\|CRISPRCasFinder,CRT	2935606-2935637	32	NC_025028	Uncultured bacterium pMCBF6 plasmid pMCBF6, complete sequence	10190-10221	10	0.688
NZ_CP019409_2	2.6\|2952991\|32\|NZ_CP019409\|CRISPRCasFinder,CRT,PILER-CR	2952991-2953022	32	NZ_CP049159	Caballeronia sp. SBC1 plasmid pSBC1_3, complete sequence	210870-210901	10	0.688
NZ_CP019409_2	2.6\|2952991\|32\|NZ_CP019409\|CRISPRCasFinder,CRT,PILER-CR	2952991-2953022	32	NZ_CP049319	Caballeronia sp. SBC2 plasmid pSBC2-3, complete sequence	166051-166082	10	0.688
NZ_CP019409_2	2.8\|2953113\|32\|NZ_CP019409\|CRISPRCasFinder,CRT,PILER-CR	2953113-2953144	32	NC_021067	Vibrio phage helene 12B3 genomic sequence	23644-23675	10	0.688
NZ_CP019409_1	1.5\|2935850\|32\|NZ_CP019409\|CRISPRCasFinder,CRT,PILER-CR	2935850-2935881	32	NZ_CP045120	Rubrobacter sp. SCSIO 52909 plasmid unnamed1, complete sequence	40613-40644	11	0.656

1. spacer 1.1|2935606|32|NZ_CP019409|CRISPRCasFinder,CRT matches to MT230534 (Pantoea phage vB_PagM_SSEM1, complete genome) position: , mismatch: 6, identity: 0.812

gcatttatcacgcagacagccagcattaccgc	CRISPR spacer
tcatttatcacacagacagacagcattattac	Protospacer
 **********.******* ********...*

2. spacer 2.6|2952991|32|NZ_CP019409|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AF135182 (Serratia entomophila strain A1MO2 plasmid pADAP, complete sequence) position: , mismatch: 7, identity: 0.781

-tgtattattctgaccagtgcgctgcgcatcag	CRISPR spacer
ctgca-ggcgctgaccagtgcgctgagcatcag	Protospacer
 **.*  .. *************** *******

3. spacer 2.6|2952991|32|NZ_CP019409|CRISPRCasFinder,CRT,PILER-CR matches to NC_002523 (Serratia entomophila plasmid pADAP, complete sequence) position: , mismatch: 7, identity: 0.781

-tgtattattctgaccagtgcgctgcgcatcag	CRISPR spacer
ctgca-ggcgctgaccagtgcgctgagcatcag	Protospacer
 **.*  .. *************** *******

4. spacer 1.4|2935789|32|NZ_CP019409|CRISPRCasFinder,CRT,PILER-CR matches to KM659096 (Paracoccus yeei plasmid pLM20P4, complete sequence) position: , mismatch: 9, identity: 0.719

tcctggtccgcgctgctgcgtaaatcagctgg	CRISPR spacer
ctggggcgggcgctgttgcgcaaatcagctgg	Protospacer
..  **.  ******.****.***********

5. spacer 1.5|2935850|32|NZ_CP019409|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032346 (Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence) position: , mismatch: 9, identity: 0.719

atgtattaccacggtcgccacgtcgcccggac	CRISPR spacer
gctgtccagcacggtcgccacgtcgcccagac	Protospacer
..   ..* *******************.***

6. spacer 1.1|2935606|32|NZ_CP019409|CRISPRCasFinder,CRT matches to NC_025028 (Uncultured bacterium pMCBF6 plasmid pMCBF6, complete sequence) position: , mismatch: 10, identity: 0.688

gcatttatcacgcagacagccagcattaccgc	CRISPR spacer
aggagaatcacgcagacaatcagcattacgcc	Protospacer
. .   ************..*********  *

7. spacer 2.6|2952991|32|NZ_CP019409|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP049159 (Caballeronia sp. SBC1 plasmid pSBC1_3, complete sequence) position: , mismatch: 10, identity: 0.688

tgtattattctgaccagtgcgctgcgcatcag	CRISPR spacer
cgccactgcctgagcagtgcgctgcgaatcag	Protospacer
.*.  .  .**** ************ *****

8. spacer 2.6|2952991|32|NZ_CP019409|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP049319 (Caballeronia sp. SBC2 plasmid pSBC2-3, complete sequence) position: , mismatch: 10, identity: 0.688

tgtattattctgaccagtgcgctgcgcatcag	CRISPR spacer
cgccactgcctgagcagtgcgctgcgaatcag	Protospacer
.*.  .  .**** ************ *****

9. spacer 2.8|2953113|32|NZ_CP019409|CRISPRCasFinder,CRT,PILER-CR matches to NC_021067 (Vibrio phage helene 12B3 genomic sequence) position: , mismatch: 10, identity: 0.688

acgagcgcggagtaaaagatcggatatatgag	CRISPR spacer
ccctattaagagtaaaagattggttatatgag	Protospacer
 *  ..  .***********.** ********

10. spacer 1.5|2935850|32|NZ_CP019409|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045120 (Rubrobacter sp. SCSIO 52909 plasmid unnamed1, complete sequence) position: , mismatch: 11, identity: 0.656

atgtattaccacggtcgccacgtcgcccggac	CRISPR spacer
gctggcgaccacgggcgccacctcgcccgggg	Protospacer
..  .. ******* ****** ********.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

293367 : 349271

Shigella_phage(100.0%)

plate,transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_024797308.1\|293367_294363_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_076934792.1\|294359_296243_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_076934793.1\|296258_296753_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_024797310.1\|296749_297574_-	hypothetical protein	NA	NA	NA	NA
WP_024797311.1\|297560_298463_-	type VI secretion system-associated protein TagK	NA	NA	NA	NA
WP_000175471.1\|301578_301869_+	hypothetical protein	NA	NA	NA	NA
WP_023219935.1\|301930_302473_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_000013884.1\|302496_304005_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_023202546.1\|304071_304458_+	BPSL0067 family protein	NA	NA	NA	NA
WP_077917331.1\|304584_304917_+	hypothetical protein	NA	NA	NA	NA
WP_000312793.1\|305168_305654_+	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_076934794.1\|306259_307603_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_076934795.1\|307599_308904_+	type VI secretion system protein TssL	NA	NA	NA	NA
WP_125854224.1\|308908_309694_+	hypothetical protein	NA	NA	NA	NA
WP_023216589.1\|309690_310185_+	hypothetical protein	NA	NA	NA	NA
WP_076934796.1\|310421_314291_+	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_076934797.1\|314290_315058_+	DUF2094 domain-containing protein	NA	NA	NA	NA
WP_076934798.1\|315100_315571_+	glucosaminidase domain-containing protein	NA	NA	NA	NA
WP_076934799.1\|315555_316017_+	hypothetical protein	NA	NA	NA	NA
WP_076934800.1\|316203_316935_+	hypothetical protein	NA	NA	NA	NA
WP_115286307.1\|316931_317366_+	hypothetical protein	NA	NA	NA	NA
WP_188318461.1\|317545_317692_+	hypothetical protein	NA	NA	NA	NA
WP_076934801.1\|318080_320330_+	type VI secretion system tip protein VgrG	NA	NA	NA	NA
WP_076934802.1\|320389_320848_+	DcrB-related protein	NA	NA	NA	NA
WP_141022915.1\|325581_326046_+	hypothetical protein	NA	NA	NA	NA
WP_076934804.1\|326091_326367_-	type I addiction module toxin, SymE family	NA	NA	NA	NA
WP_078057633.1\|326807_327086_+	hypothetical protein	NA	NA	NA	NA
WP_076934806.1\|327152_327467_-	type I toxin-antitoxin system SymE family toxin	NA	NA	NA	NA
WP_076934807.1\|328983_329481_+	pilus assembly protein	NA	NA	NA	NA
WP_001537407.1\|329564_330302_+	pili assembly chaperone PapD	NA	NA	NA	NA
WP_076934808.1\|330325_332836_+	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_076934809.1\|332857_333328_+	pilin structural protein SafD	NA	NA	NA	NA
WP_076934810.1\|333734_334556_+	polysaccharide deacetylase family protein	NA	NA	NA	NA
WP_000970302.1\|335372_336320_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_001537061.1\|336439_336565_+	hypothetical protein	NA	NA	NA	NA
WP_076934811.1\|338457_339168_+	fimbrial protein TcfA	NA	NA	NA	NA
WP_000287812.1\|339218_339794_+	fimbrial protein TcfB	NA	NA	NA	NA
WP_076934812.1\|339902_342590_+	fimbrial outer membrane usher protein TcfC	NA	NA	NA	NA
WP_076934813.1\|342612_343644_+	fimbrial protein TcfD	NA	NA	NA	NA
WP_108638227.1\|344760_345910_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	6.8e-51	42.3
WP_000141547.1\|346162_346618_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
WP_076934815.1\|346757_347375_+	TioA protein	NA	NA	NA	NA
WP_072320003.1\|347840_348035_-	hypothetical protein	NA	NA	NA	NA
WP_149866877.1\|348120_349271_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	6.8e-51	42.3

DBSCAN-SWA_2

365955 : 434259

Enterobacteria_phage(25.0%)

transposase,capsid,integrase

attL 364593:364609|attR 453254:453270

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
364593:364609	attL	NA	NA	NA	NA
WP_001285275.1\|365955_367059_+	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	6.9e-61	39.8
WP_000893216.1\|367070_368321_+	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	3.6e-98	48.2
WP_149866878.1\|369084_370235_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	6.8e-51	42.3
WP_076934819.1\|370852_371857_+\|capsid	P2 family phage major capsid protein	F1BUM2	Cronobacter_phage	1.9e-81	48.3
WP_001111089.1\|371944_372535_+	ash family protein	Q7M2A7	Enterobacteria_phage	4.9e-21	49.6
WP_000839712.1\|372531_372768_+	hypothetical protein	NA	NA	NA	NA
WP_076934820.1\|372760_373171_+	hypothetical protein	NA	NA	NA	NA
WP_076934821.1\|373167_375855_+	DUF927 domain-containing protein	A0A1W6JPG0	Morganella_phage	8.5e-113	34.5
WP_000783295.1\|376137_376410_+	ogr/Delta-like zinc finger family protein	F1BUM8	Cronobacter_phage	3.2e-20	50.0
WP_076936362.1\|376920_378477_+	DUF262 domain-containing protein	E5E3X3	Burkholderia_phage	5.9e-183	60.5
WP_076934822.1\|378958_379357_+	hypothetical protein	NA	NA	NA	NA
WP_076934823.1\|379404_380163_-	fimbrial assembly chaperone	NA	NA	NA	NA
WP_076934824.1\|380128_381454_-	fimbrial usher protein StbD	NA	NA	NA	NA
WP_076934825.1\|381458_384020_-	fimbrial outer membrane usher protein	NA	NA	NA	NA
WP_076934826.1\|384003_384765_-	fimbrial chaperone	NA	NA	NA	NA
WP_076934827.1\|384826_385363_-	type 1 fimbrial protein	NA	NA	NA	NA
WP_149866879.1\|386107_387257_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	6.8e-51	42.3
WP_076934831.1\|388234_388978_+	response regulator	NA	NA	NA	NA
WP_000545426.1\|388950_389439_+	hypothetical protein	NA	NA	NA	NA
WP_000830237.1\|389841_390366_+	Ail/Lom family outer membrane beta-barrel protein	B0FEG7	Escherichia_phage	1.3e-09	29.2
WP_000610827.1\|390509_391151_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000737127.1\|391161_391386_+	membrane protein	NA	NA	NA	NA
WP_000722978.1\|391443_391803_+	DUF4156 domain-containing protein	NA	NA	NA	NA
WP_076936364.1\|391872_393330_-	multidrug efflux transporter outer membrane subunit MdsC	NA	NA	NA	NA
WP_076934832.1\|393346_396514_-	multidrug efflux RND transporter permease subunit MdsB	NA	NA	NA	NA
WP_076934833.1\|396510_397737_-	multidrug efflux RND transporter periplasmic adaptor subunit MdsA	NA	NA	NA	NA
WP_076934834.1\|398013_400302_+	gold/copper-translocating P-type ATPase GolT	E4ZFI9	Streptococcus_phage	2.1e-91	33.0
WP_001020583.1\|400313_400778_+	Au(I) sensor transcriptional regulator GolS	NA	NA	NA	NA
WP_001159470.1\|400855_401050_+	gold resistance metallochaperone GolB	NA	NA	NA	NA
WP_076934835.1\|401341_402595_+	MFS transporter	NA	NA	NA	NA
WP_076934836.1\|402783_404742_+	site-specific DNA-methyltransferase	Q1MVP0	Enterobacteria_phage	1.7e-81	32.2
WP_078057567.1\|404751_407724_+	type III restriction-modification system endonuclease	Q71TG1	Escherichia_phage	2.7e-83	26.2
WP_000934834.1\|408000_408102_+	hypothetical protein	NA	NA	NA	NA
WP_076934838.1\|408217_409621_+	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA
WP_076934839.1\|409617_410628_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA
WP_000241458.1\|410627_410759_+	DUF2474 domain-containing protein	NA	NA	NA	NA
WP_061376307.1\|410965_411970_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_188318474.1\|412115_414224_+	ferrioxamine B receptor FoxA	NA	NA	NA	NA
WP_149866880.1\|414769_415920_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	5.2e-51	42.3
WP_076934841.1\|416406_418587_+	TonB-dependent siderophore receptor	NA	NA	NA	NA
WP_076934842.1\|418628_419558_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_076934843.1\|419589_420834_-	esterase family protein	NA	NA	NA	NA
WP_076934844.1\|420943_424600_-	salmochelin/enterobactin export ABC transporter IroC	W8CYL7	Bacillus_phage	7.9e-45	28.6
WP_023194778.1\|424680_425796_-	salmochelin biosynthesis C-glycosyltransferase IroB	NA	NA	NA	NA
WP_108638227.1\|427938_429089_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	6.8e-51	42.3
WP_076934847.1\|429720_430458_+	glycoprotein 3	Q7M2A2	Enterobacteria_phage	1.5e-80	64.9
WP_000984211.1\|430454_430700_+	ogr/Delta-like zinc finger family protein	Q7M294	Enterobacteria_phage	6.3e-31	76.5
WP_076934848.1\|430716_431283_+	phage polarity suppression protein	Q7M2A1	Enterobacteria_phage	2.6e-56	62.7
WP_076934849.1\|431594_433055_-	hypothetical protein	NA	NA	NA	NA
WP_076934850.1\|433065_434259_-\|integrase	tyrosine-type recombinase/integrase	A0A1B5FPC6	Escherichia_phage	7.2e-104	49.6
453254:453270	attR	NA	NA	NA	NA

DBSCAN-SWA_3

462664 : 495586

Salmonella_phage(64.1%)

tail,lysis,plate,head,holin,tRNA,terminase,capsid,portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000469804.1\|462664_463432_+\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
WP_000065257.1\|463472_463820_+	50S ribosomal protein L19	NA	NA	NA	NA
WP_000972010.1\|463964_464183_-	DNA-binding transcriptional regulator	Q37973	Salmonella_virus	1.2e-38	100.0
WP_076934853.1\|464258_465428_-	phage late control D family protein	A0A0M5M5V5	Salmonella_phage	2.7e-212	98.5
WP_076934854.1\|465424_465910_-\|tail	phage tail protein	A0A0M4RCP0	Salmonella_phage	1.1e-84	98.8
WP_076934855.1\|465924_468369_-\|tail	phage tail tape measure protein	A0A0M3UL85	Salmonella_phage	0.0e+00	95.9
WP_086127217.1\|468361_468517_-\|tail	GpE family phage tail protein	Q6K1G8	Salmonella_virus	2.6e-22	96.1
WP_076934856.1\|468513_468849_-\|tail	phage tail assembly protein	S4TTB2	Salmonella_phage	4.0e-52	99.1
WP_001207675.1\|468911_469430_-\|tail	phage major tail tube protein	S4TNZ0	Salmonella_phage	6.5e-94	100.0
WP_076934857.1\|469445_470633_-\|tail	phage tail sheath protein	Q6K1H0	Salmonella_virus	2.2e-222	99.5
WP_000874698.1\|470767_471337_-\|tail	tail fiber assembly protein	A0A0M4RTP2	Salmonella_phage	3.0e-92	86.8
WP_065680860.1\|471336_473079_-\|tail	phage tail protein	A0A0M3ULF6	Salmonella_phage	2.5e-259	95.0
WP_023185411.1\|473089_473620_-\|tail	phage tail protein I	A0A0M4R4W9	Salmonella_phage	9.2e-104	99.4
WP_024157126.1\|473612_474521_-\|plate	baseplate assembly protein	S4TNY7	Salmonella_phage	2.0e-159	98.7
WP_024157127.1\|474527_474875_-	GPW/gp25 family protein	A0A0M4RE59	Salmonella_phage	1.9e-57	100.0
WP_076934858.1\|474871_475513_-\|plate	phage baseplate assembly protein V	A0A0M4S6F6	Salmonella_phage	1.4e-114	99.5
WP_001293096.1\|475581_476031_-	phage virion morphogenesis protein	S4TP59	Salmonella_phage	4.2e-73	99.3
WP_001169074.1\|476023_476491_-\|tail	phage tail protein	S4TTA5	Salmonella_phage	1.1e-84	100.0
WP_076934859.1\|476453_476627_-\|lysis	phage lysis protein	S4TNY4	Salmonella_phage	4.7e-25	96.5
WP_076934860.1\|476598_477012_-\|lysis	LysB family phage lysis regulatory protein	Q6K1I0	Salmonella_virus	6.6e-49	97.8
WP_076934861.1\|477008_477506_-	glycoside hydrolase family 104 protein	S4TUB1	Salmonella_phage	2.0e-92	98.8
WP_024157130.1\|477492_477789_-\|holin	phage holin family protein	Q6K1I2	Salmonella_virus	1.7e-46	99.0
WP_000868400.1\|477792_477996_-\|tail	tail protein X	A0A0M3ULF4	Salmonella_phage	3.6e-32	100.0
WP_000214255.1\|477995_478502_-\|head	head completion/stabilization protein	S4TNY1	Salmonella_phage	1.3e-91	100.0
WP_076934862.1\|478595_479345_-\|terminase	terminase endonuclease subunit	Q6K1I5	Salmonella_virus	3.6e-130	99.2
WP_001247243.1\|479348_480416_-\|capsid	phage major capsid protein, P2 family	A0A0M4R4W2	Salmonella_phage	1.2e-198	99.7
WP_071624319.1\|480492_481347_-\|capsid	GPO family capsid scaffolding protein	A0A0M3UL81	Salmonella_phage	3.7e-147	99.6
WP_076934863.1\|481512_483282_+\|terminase	terminase ATPase subunit family protein	S4TT96	Salmonella_phage	0.0e+00	99.5
WP_076934864.1\|483281_484328_+\|portal	phage portal protein	S4TNX7	Salmonella_phage	2.2e-189	99.1
WP_001161211.1\|484761_485703_+	hypothetical protein	Q2P9W7	Enterobacteria_phage	2.2e-164	90.4
WP_153260300.1\|485803_485977_+	hypothetical protein	NA	NA	NA	NA
WP_001222154.1\|486181_486415_-	DinI family protein	A0A0M4S6H1	Salmonella_phage	8.0e-36	98.7
WP_000232650.1\|486418_486601_-	hypothetical protein	A0A0M5M1G5	Salmonella_phage	4.1e-27	100.0
WP_078057634.1\|486718_488968_-	replication endonuclease	A0A218M4H2	Erwinia_phage	0.0e+00	90.5
WP_161976650.1\|488966_489560_+	hypothetical protein	NA	NA	NA	NA
WP_025711962.1\|489581_489806_-	TraR/DksA family transcriptional regulator	Q6K1F5	Salmonella_virus	3.2e-34	97.3
WP_025711961.1\|489805_490033_-	DUF2732 domain-containing protein	A0A0M3UL87	Salmonella_phage	1.7e-30	97.3
WP_000963463.1\|490100_490439_-	DUF5347 domain-containing protein	A0A218M4I7	Erwinia_phage	7.3e-54	94.6
WP_000920169.1\|490402_490603_-	DUF2724 domain-containing protein	Q6K1F7	Salmonella_virus	1.2e-32	100.0
WP_025711960.1\|490610_491120_-	phage regulatory CII family protein	Q6K1F8	Salmonella_virus	6.2e-89	98.8
WP_025711959.1\|491170_491524_-	hypothetical protein	Q6K1F9	Salmonella_virus	1.1e-57	99.1
WP_076934867.1\|491637_492480_+	phage repressor protein CI	A0A0M4RE65	Salmonella_phage	3.9e-112	70.4
WP_076934868.1\|492479_493043_+	WYL domain-containing protein	NA	NA	NA	NA
WP_001030985.1\|494365_495586_-	diguanylate cyclase DgcN	A0A2K8I9Y5	Pseudomonas_phage	5.8e-08	36.2

DBSCAN-SWA_4

603503 : 680451

Salmonella_phage(59.62%)

tail,transposase,holin,integrase,terminase,tRNA

attL 605452:605467|attR 689429:689444

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001107139.1\|603503_604778_+\|tRNA	histidine--tRNA ligase	NA	NA	NA	NA
WP_000409190.1\|604791_605412_+	YfgM family protein	NA	NA	NA	NA
WP_076933844.1\|605422_606601_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA
605452:605467	attL	NA	NA	NA	NA
WP_023196046.1\|606717_608190_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA
WP_000406469.1\|608277_608499_+	zinc ribbon domain-containing protein	NA	NA	NA	NA
WP_076934906.1\|608845_611041_+	intimin-like inverse autotransporter SinH	NA	NA	NA	NA
WP_149866881.1\|611521_612671_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	1.4e-51	42.6
WP_076934909.1\|613435_619024_+	hypothetical protein	NA	NA	NA	NA
WP_076934910.1\|626253_631590_+	fibronectin-binding autotransporter adhesin ShdA	A0A2L1IV18	Escherichia_phage	2.9e-27	25.1
WP_020899077.1\|631751_633101_-	exodeoxyribonuclease VII large subunit	A0A2H4UVM9	Bodo_saltans_virus	4.4e-41	35.6
WP_000944174.1\|633261_634728_+	IMP dehydrogenase	A0A1V0SHK8	Klosneuvirus	4.0e-88	38.7
WP_000138293.1\|634797_636375_+	glutamine-hydrolyzing GMP synthase	NA	NA	NA	NA
WP_076934911.1\|636567_637821_+\|integrase	tyrosine-type recombinase/integrase	Q858E8	Salmonella_phage	5.7e-229	95.4
WP_076934912.1\|637817_637997_-	hypothetical protein	T1SA82	Salmonella_phage	7.1e-24	98.3
WP_076934913.1\|637993_638641_-	adenine methylase	A0A193GYV6	Enterobacter_phage	1.7e-120	93.5
WP_076934914.1\|638637_639276_-	hypothetical protein	A0A059VF56	Pseudomonas_phage	1.6e-25	34.4
WP_076934915.1\|639272_639431_-	DUF1317 family protein	T1SAR0	Salmonella_phage	7.4e-17	78.8
WP_000041117.1\|639423_639723_-	PerC family transcriptional regulator	T1S9J5	Salmonella_phage	4.0e-48	99.0
WP_015971066.1\|639832_640081_-	AlpA family phage regulatory protein	T1SA17	Salmonella_phage	4.0e-41	100.0
WP_076934916.1\|640130_641072_-	recombinase RecT	A0A193GYL3	Enterobacter_phage	6.3e-164	91.7
WP_076934917.1\|641068_641890_-	PD-(D/E)XK nuclease-like domain-containing protein	A0A193GYK2	Enterobacter_phage	1.2e-158	97.4
WP_076732642.1\|641886_642189_-	hypothetical protein	T1SA88	Salmonella_phage	5.0e-46	97.0
WP_188318462.1\|642193_642343_-	hypothetical protein	T1SA20	Salmonella_phage	1.5e-24	98.0
WP_003037805.1\|642567_643164_-	helix-turn-helix transcriptional regulator	Q858D7	Salmonella_phage	5.9e-107	99.0
WP_076934919.1\|643319_643553_+	hypothetical protein	Q858D6	Salmonella_phage	1.2e-39	98.7
WP_076934920.1\|643898_644960_+	DNA cytosine methyltransferase	Q858D4	Salmonella_phage	7.6e-166	74.6
WP_076934921.1\|644949_645627_+	Pyocin large subunit	Q858D3	Salmonella_phage	4.2e-125	98.2
WP_076934922.1\|645757_646222_+	crossover junction endodeoxyribonuclease RuvC	Q858D2	Salmonella_phage	5.8e-78	96.8
WP_188318463.1\|646790_647333_+	hypothetical protein	J9Q748	Salmonella_phage	6.6e-73	75.1
WP_076934923.1\|647819_648038_+	DUF4014 family protein	C6ZR28	Salmonella_phage	9.2e-34	95.8
WP_076934924.1\|648835_649189_+	hypothetical protein	NA	NA	NA	NA
WP_076934925.1\|649181_649463_+	RNA-binding protein	A0A0F6R7P5	Escherichia_coli_O157_typing_phage	6.7e-37	75.3
WP_076934926.1\|649455_649794_+	hypothetical protein	A0A193GYX4	Enterobacter_phage	1.1e-49	86.6
WP_078057571.1\|649811_650024_+	hypothetical protein	K0G0I6	Escherichia_phage	1.1e-12	52.5
WP_176207413.1\|650020_650698_+\|terminase	terminase small subunit	Q858H4	Salmonella_phage	4.5e-103	98.5
WP_076934927.1\|650694_652176_+\|terminase	terminase	M1F3C4	Salmonella_phage	3.3e-292	97.8
WP_042306810.1\|652218_652638_-	hypothetical protein	A0A2H4ZJ80	Enterobacter_phage	3.0e-17	89.8
WP_000334867.1\|653312_653519_+	hypothetical protein	T1SA67	Salmonella_phage	5.7e-09	100.0
WP_076934928.1\|653533_655204_+\|tail	phage tail protein	T1S9Z7	Salmonella_phage	5.9e-306	96.8
WP_076934929.1\|655200_655500_+	hypothetical protein	T1SBI9	Salmonella_phage	1.6e-36	78.1
WP_076934930.1\|655496_655820_+\|tRNA	phenylalanyl-tRNA synthetase subunit beta	NA	NA	NA	NA
WP_076934931.1\|655831_656539_+	peptidase	Q858G9	Salmonella_phage	7.3e-72	91.1
WP_076934932.1\|656556_657543_+	hypothetical protein	G9L6C5	Escherichia_phage	5.6e-163	86.3
WP_076934933.1\|657594_658035_+	hypothetical protein	A0A193GYT9	Enterobacter_phage	2.3e-63	89.0
WP_076934934.1\|658045_658390_+	hypothetical protein	G9L6C7	Escherichia_phage	4.4e-38	72.2
WP_003037867.1\|658441_658765_+	hypothetical protein	A0A193GYH8	Enterobacter_phage	1.7e-36	72.8
WP_076934935.1\|658764_659370_+	hypothetical protein	T1SAQ2	Salmonella_phage	1.1e-108	97.0
WP_076934936.1\|659369_661847_+	hypothetical protein	Q858G3	Salmonella_phage	0.0e+00	96.1
WP_076934937.1\|661846_662311_+	hypothetical protein	T1SA73	Salmonella_phage	4.9e-85	96.8
WP_076934938.1\|662310_662853_+	hypothetical protein	T1SA02	Salmonella_phage	1.7e-68	81.7
WP_076934939.1\|662865_665394_+	hypothetical protein	Q858G0	Salmonella_phage	0.0e+00	95.5
WP_076934940.1\|665393_666959_+	hypothetical protein	Q858F9	Salmonella_phage	1.3e-241	74.9
WP_076934941.1\|666958_669715_+	hypothetical protein	Q858F8	Salmonella_phage	0.0e+00	98.0
WP_003847193.1\|669944_670205_-	hypothetical protein	T1SA06	Salmonella_phage	7.6e-43	100.0
WP_149866882.1\|670402_672709_+	hypothetical protein	A0A0F6TJC8	Escherichia_coli_O157_typing_phage	3.8e-101	83.4
WP_076934943.1\|672756_673776_-	hypothetical protein	NA	NA	NA	NA
WP_076934944.1\|673790_675251_-	MBOAT family protein	A0A125RNP0	Pseudomonas_phage	2.5e-82	39.4
WP_076936381.1\|675442_675847_+	hypothetical protein	T1SA79	Salmonella_phage	6.4e-65	98.5
WP_076934945.1\|675833_676139_+\|holin	phage holin family protein	T1SA10	Salmonella_phage	1.9e-45	95.0
WP_028120221.1\|676131_676611_+	TIGR02594 family protein	A0A222YWL8	Escherichia_phage	5.1e-61	66.9
WP_076934946.1\|676607_677090_+	DUF2514 domain-containing protein	Q858E9	Salmonella_phage	3.2e-63	83.1
WP_076934947.1\|677428_678682_+\|integrase	tyrosine-type recombinase/integrase	A0A1X9TCT6	Enterobacter_phage	1.2e-165	71.9
WP_076934949.1\|679221_680451_+	ImmA/IrrE family metallo-endopeptidase	A0A0P0ZCT8	Stx2-converting_phage	9.5e-19	39.2
689429:689444	attR	NA	NA	NA	NA

DBSCAN-SWA_5

1311210 : 1315633

Escherichia_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_076935132.1\|1311210_1311624_+	subtilase cytotoxin subunit B	A0A0U2KD34	Escherichia_phage	3.2e-19	38.9
WP_076935133.1\|1311640_1312369_+	pertussis-like toxin subunit ArtA	A0A0U2KD26	Escherichia_phage	2.0e-61	52.5
WP_024797575.1\|1312560_1313103_+	glycoside hydrolase family 108 protein	A0A0U2S643	Escherichia_phage	1.8e-70	66.5
WP_076935134.1\|1313251_1313629_-	DUF1353 domain-containing protein	I1TQ41	Pseudomonas_phage	2.2e-14	38.4
WP_076936396.1\|1313701_1314520_-	cytolethal distending toxin subunit B family protein	A5LH53	Enterobacteria_phage	8.5e-64	50.7
WP_039513200.1\|1315017_1315182_+	hypothetical protein	NA	NA	NA	NA
WP_000497451.1\|1315393_1315633_-	virulence protein MsgA	K7P6H1	Enterobacteria_phage	8.5e-33	88.6

DBSCAN-SWA_6

1922985 : 1975792

Escherichia_phage(52.38%)

tail,transposase,lysis,plate,protease,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000984498.1\|1922985_1923867_-\|protease	protease HtpX	NA	NA	NA	NA
WP_076935328.1\|1924060_1926109_-	carboxy terminal-processing peptidase	A0A0R6PIZ1	Moraxella_phage	1.4e-86	33.5
WP_000431401.1\|1926128_1926815_-	RNA chaperone ProQ	NA	NA	NA	NA
WP_001518229.1\|1926912_1927410_-	GAF domain-containing protein	NA	NA	NA	NA
WP_001207296.1\|1927538_1928822_+	membrane integrity lipid transport subunit YebS	NA	NA	NA	NA
WP_188318470.1\|1928790_1931424_+	MCE family protein	NA	NA	NA	NA
WP_076936416.1\|1931501_1932941_+	16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF	NA	NA	NA	NA
WP_024131167.1\|1933058_1933295_+	DUF1480 family protein	NA	NA	NA	NA
WP_000457838.1\|1933405_1933597_+	YebW family protein	NA	NA	NA	NA
WP_000986166.1\|1933615_1934266_-	protein-serine/threonine phosphatase	A0A222YWF0	Escherichia_phage	8.5e-59	51.4
WP_001134850.1\|1935739_1935904_-	hypothetical protein	NA	NA	NA	NA
WP_000182069.1\|1936188_1936911_-	SPI-1 type III secretion system guanine nucleotide exchange factor SopE2	NA	NA	NA	NA
WP_076935330.1\|1937594_1937990_+	DUF1398 domain-containing protein	C6ZCX4	Enterobacteria_phage	7.0e-16	32.8
WP_000030947.1\|1938318_1938795_+	hypothetical protein	NA	NA	NA	NA
WP_000354410.1\|1938923_1939343_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_078057590.1\|1939712_1939982_+	hypothetical protein	Q6UAV5	Klebsiella_phage	2.6e-06	39.0
WP_078057591.1\|1940147_1940288_+	hypothetical protein	NA	NA	NA	NA
WP_061371941.1\|1942298_1943213_+	DMT family transporter	NA	NA	NA	NA
WP_000480735.1\|1943345_1943504_+	hypothetical protein	NA	NA	NA	NA
WP_076935331.1\|1943513_1944128_+	disulfide bond formation protein B	NA	NA	NA	NA
WP_023209792.1\|1948187_1948889_+	DUF1076 domain-containing protein	NA	NA	NA	NA
WP_149022698.1\|1949430_1949577_+	hypothetical protein	NA	NA	NA	NA
WP_023225454.1\|1949733_1950309_-\|tail	tail fiber assembly protein	A0A0M4RTP2	Salmonella_phage	6.3e-90	85.6
WP_076935332.1\|1950308_1952018_-\|tail	tail fiber protein	A0A0U2SAV1	Escherichia_phage	2.0e-91	66.0
WP_000729406.1\|1952014_1952641_-	hypothetical protein	A0A0U2RK03	Escherichia_phage	3.3e-92	71.6
WP_023225456.1\|1952624_1953851_-\|plate	baseplate J/gp47 family protein	A0A0U2RJZ0	Escherichia_phage	8.3e-148	63.6
WP_001261467.1\|1953847_1954180_-	hypothetical protein	NA	NA	NA	NA
WP_000026342.1\|1954176_1954893_-	hypothetical protein	NA	NA	NA	NA
WP_023225457.1\|1954889_1955933_-	hypothetical protein	NA	NA	NA	NA
WP_000061271.1\|1955932_1956208_-	hypothetical protein	NA	NA	NA	NA
WP_000011138.1\|1956204_1956921_-	hypothetical protein	A0A0U2JGI7	Escherichia_phage	1.3e-28	36.5
WP_076935333.1\|1956920_1958975_-	hypothetical protein	A0A2R3UAN6	Myoviridae_environmental_samples	2.9e-20	35.8
WP_023225459.1\|1959098_1959686_-	hypothetical protein	NA	NA	NA	NA
WP_001133547.1\|1959685_1960123_-	hypothetical protein	NA	NA	NA	NA
WP_023225460.1\|1960126_1961521_-	hypothetical protein	A0A0U2KD19	Escherichia_phage	1.0e-69	36.6
WP_023225461.1\|1961526_1962465_-	hypothetical protein	A0A0U2SH76	Escherichia_phage	2.9e-52	39.9
WP_031604700.1\|1962448_1962859_-	hypothetical protein	NA	NA	NA	NA
WP_001114360.1\|1962876_1963302_-	hypothetical protein	NA	NA	NA	NA
WP_001643824.1\|1963314_1963800_-	hypothetical protein	NA	NA	NA	NA
WP_023225462.1\|1963864_1964896_-	DUF2184 domain-containing protein	A0A0U2QQI2	Escherichia_phage	1.9e-73	45.8
WP_023225463.1\|1964913_1965786_-	hypothetical protein	NA	NA	NA	NA
WP_076935334.1\|1965806_1967381_-	NUDIX domain-containing protein	Q6UJ14	Burkholderia_virus	1.7e-20	48.6
WP_023225465.1\|1967381_1968257_-	hypothetical protein	A0A0U2I1R8	Escherichia_phage	9.1e-56	45.8
WP_023225466.1\|1968228_1969659_-	DUF1073 domain-containing protein	A0A0U2S5X9	Escherichia_phage	2.9e-91	37.7
WP_023225467.1\|1969658_1970930_-	hypothetical protein	A0A0U2JTW9	Escherichia_phage	1.5e-83	38.3
WP_023225468.1\|1970919_1971891_-\|terminase	terminase small subunit	I6NV32	Burkholderia_virus	6.0e-24	32.8
WP_023225469.1\|1971961_1972144_-	DUF826 domain-containing protein	NA	NA	NA	NA
WP_149022699.1\|1972371_1972827_-\|lysis	lysis protein	A0A0M4RD57	Salmonella_phage	1.6e-56	79.2
WP_023225471.1\|1973144_1973684_-	lysozyme	K7PLY1	Enterobacteria_phage	1.3e-76	71.2
WP_076936418.1\|1974214_1974628_+	DUF2441 domain-containing protein	NA	NA	NA	NA
WP_108638227.1\|1974641_1975792_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	6.8e-51	42.3

DBSCAN-SWA_7

1979257 : 1995091

Enterobacteria_phage(29.41%)

integrase

attL 1970806:1970820|attR 1996964:1996978

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1970806:1970820	attL	NA	NA	NA	NA
WP_001204682.1\|1979257_1979620_-	antitermination protein	Q777W5	Enterobacteria_phage	1.3e-53	80.8
WP_023209020.1\|1979619_1979922_-	hypothetical protein	K7P7Q1	Enterobacteria_phage	8.0e-36	78.3
WP_021000145.1\|1979918_1980113_-	hypothetical protein	S4TNP0	Salmonella_phage	6.1e-13	61.5
WP_000940759.1\|1980109_1980709_-	DUF1367 family protein	A0A0U2RT94	Escherichia_phage	1.9e-97	83.4
WP_000911592.1\|1980772_1981021_-	hypothetical protein	NA	NA	NA	NA
WP_001597144.1\|1981270_1981426_-	type I toxin-antitoxin system Hok family toxin	A0A0U2QV81	Escherichia_phage	1.2e-14	84.3
WP_000687975.1\|1981629_1981902_-	hypothetical protein	NA	NA	NA	NA
WP_000089421.1\|1981898_1982294_-	DUF977 family protein	A0A088CBK9	Shigella_phage	1.7e-17	38.1
WP_157872077.1\|1982309_1982852_-	replication protein	A0A0U2JGJ0	Escherichia_phage	7.1e-67	74.8
WP_000729540.1\|1982763_1983765_-	DUF1376 domain-containing protein	A0A0U2RT81	Escherichia_phage	4.4e-123	68.1
WP_078057592.1\|1983808_1984303_-	hypothetical protein	NA	NA	NA	NA
WP_001033911.1\|1984289_1984544_-	helix-turn-helix transcriptional regulator	K7PKH4	Enterobacteria_phage	5.3e-17	60.9
WP_031617964.1\|1984642_1985041_+	helix-turn-helix domain-containing protein	K7PH19	Enterobacteria_phage	1.2e-18	56.0
WP_001669535.1\|1985482_1985797_-	hypothetical protein	NA	NA	NA	NA
WP_000613374.1\|1986228_1986513_+	hypothetical protein	K7PGY4	Enterobacteria_phage	1.7e-08	53.2
WP_076935335.1\|1986587_1986923_+	hypothetical protein	NA	NA	NA	NA
WP_076935336.1\|1987063_1989754_+	exodeoxyribonuclease VIII	Q9QF34	Lambdoid_phage	1.5e-117	71.5
WP_001534364.1\|1989746_1990577_+	recombination protein RecT	A0A1P8DTF2	Proteus_phage	1.0e-104	72.0
WP_023225901.1\|1990623_1990809_+	DUF1187 family protein	A0A0U2QL97	Escherichia_phage	1.1e-11	57.9
WP_023225902.1\|1990907_1991324_+	hypothetical protein	NA	NA	NA	NA
WP_031617966.1\|1991396_1991669_+	excisionase	A0A2H4J5E1	uncultured_Caudovirales_phage	8.8e-10	39.7
WP_023225904.1\|1991649_1992729_+\|integrase	phage integrase Arm DNA-binding domain-containing protein	A0A2H4IYC8	uncultured_Caudovirales_phage	4.8e-99	50.6
WP_076935337.1\|1993102_1993456_-	YebY family protein	NA	NA	NA	NA
WP_017441953.1\|1993472_1994348_-	copper homeostasis membrane protein CopD	NA	NA	NA	NA
WP_078057593.1\|1994348_1994723_-	CopC domain-containing protein YobA	NA	NA	NA	NA
WP_000856225.1\|1994860_1995091_+	DNA polymerase III subunit theta	H9C187	Pectobacterium_phage	2.9e-14	60.3
1996964:1996978	attR	NA	NA	NA	NA

DBSCAN-SWA_8

2097653 : 2104905

Morganella_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001157316.1\|2097653_2099084_-	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	7.8e-105	57.4
WP_000377042.1\|2099157_2099853_-	phosphohydrolase	A0A1D6Y7U0	Golden_Marseillevirus	2.8e-07	27.1
WP_000107430.1\|2099944_2100244_-	membrane protein	NA	NA	NA	NA
WP_023212515.1\|2100893_2102090_+	porin OmpS1	Q1MVN1	Enterobacteria_phage	7.4e-109	56.6
WP_024131109.1\|2102348_2102537_-	hypothetical protein	NA	NA	NA	NA
WP_000208509.1\|2102547_2102760_-	cold-shock protein	A0A1W6JNX5	Morganella_phage	3.9e-21	70.0
WP_058214694.1\|2103214_2104483_-	Y-family DNA polymerase	I6RSM4	Salmonella_phage	2.9e-228	92.7
WP_058214695.1\|2104485_2104905_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	1.9e-35	59.7

DBSCAN-SWA_9

2279395 : 2288593

Enterobacteria_phage(14.29%)

transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_076935420.1\|2279395_2279854_+	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	7.6e-54	72.5
WP_108638227.1\|2280109_2281260_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	6.8e-51	42.3
WP_000934064.1\|2282229_2284506_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	6.2e-165	42.3
WP_000520789.1\|2284536_2284857_-\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	4.5e-13	45.7
WP_000447499.1\|2285180_2285402_+	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	9.3e-18	64.2
WP_076935421.1\|2285531_2287478_-	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	9.1e-40	42.3
WP_001201754.1\|2287474_2288593_-	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	1.4e-08	38.9

DBSCAN-SWA_10

4252928 : 4333050

Burkholderia_phage(34.78%)

tail,transposase,plate,holin,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_076936111.1\|4252928_4254587_-\|tail	phage tail protein	A0A0M3ULH6	Salmonella_phage	1.2e-53	40.5
WP_076936113.1\|4254589_4255222_-\|tail	phage tail protein I	Q6QI98	Burkholderia_phage	1.1e-23	56.4
WP_076936115.1\|4255214_4256330_-\|plate	baseplate J/gp47 family protein	Q6QI99	Burkholderia_phage	2.2e-102	52.5
WP_076936117.1\|4256320_4256680_-	GPW/gp25 family protein	Q6QIA0	Burkholderia_phage	4.7e-35	63.3
WP_000679392.1\|4256778_4257501_-\|plate	phage baseplate assembly protein V	A0A067ZIM2	Vibrio_phage	3.9e-12	42.0
WP_076936119.1\|4257510_4258551_-	phage late control D family protein	A4JWL3	Burkholderia_virus	2.3e-74	45.3
WP_076936121.1\|4258538_4258748_-\|tail	tail protein X	A4JWL2	Burkholderia_virus	4.4e-17	60.3
WP_076936123.1\|4258747_4259701_-\|tail	phage tail protein	A4JWL1	Burkholderia_virus	3.9e-36	50.8
WP_001185653.1\|4262170_4262299_-\|tail	GpE family phage tail protein	NA	NA	NA	NA
WP_076936125.1\|4262258_4262576_-\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_076936128.1\|4262627_4263152_-\|tail	phage major tail tube protein	Q6QIA9	Burkholderia_phage	1.2e-68	69.5
WP_076936129.1\|4263151_4264579_-\|tail	phage tail sheath family protein	A4JWK5	Burkholderia_virus	8.9e-194	70.7
WP_023201676.1\|4264568_4264766_-	hypothetical protein	Q6QIB1	Burkholderia_phage	1.3e-07	54.9
WP_076936131.1\|4264762_4265218_-	hypothetical protein	NA	NA	NA	NA
WP_076936132.1\|4265376_4265691_-	hypothetical protein	Q6QIC4	Burkholderia_phage	2.4e-19	47.3
WP_076936134.1\|4265703_4266309_-	lytic transglycosylase domain-containing protein	Q5ZQZ1	Pseudomonas_phage	2.5e-60	59.9
WP_001226439.1\|4266311_4266599_-\|holin	putative holin	Q6QIC8	Burkholderia_phage	3.0e-16	48.1
WP_000615248.1\|4267173_4267521_+	DNA-binding protein	Q6QIE8	Burkholderia_phage	4.9e-21	51.5
WP_076936136.1\|4267648_4268998_-	lysine-sensitive aspartokinase 3	NA	NA	NA	NA
WP_076936137.1\|4269342_4270992_+	glucose-6-phosphate isomerase	NA	NA	NA	NA
WP_031569882.1\|4271435_4271678_+	hypothetical protein	NA	NA	NA	NA
WP_164726674.1\|4271711_4272380_+	YjbF family lipoprotein	NA	NA	NA	NA
WP_000977972.1\|4272376_4273114_+	capsule biosynthesis GfcC family protein	NA	NA	NA	NA
WP_076936141.1\|4273113_4275210_+	YjbH domain-containing protein	NA	NA	NA	NA
WP_000982752.1\|4275352_4275763_+	phosphate-starvation-inducible protein PsiE	NA	NA	NA	NA
WP_001252081.1\|4275928_4276819_-	maltose ABC transporter permease MalG	NA	NA	NA	NA
WP_000382573.1\|4276833_4278378_-	maltose ABC transporter permease MalF	NA	NA	NA	NA
WP_000695415.1\|4278509_4279700_-	maltose/maltodextrin ABC transporter substrate-binding protein MalE	NA	NA	NA	NA
WP_000179173.1\|4280061_4281171_+	maltose/maltodextrin ABC transporter ATP-binding protein MalK	Q6GZ03	Mycoplasma_phage	6.2e-17	47.2
WP_076936143.1\|4281259_4282618_+	maltoporin	NA	NA	NA	NA
WP_020838457.1\|4282781_4283699_+	maltose operon protein MalM	NA	NA	NA	NA
WP_000019217.1\|4283878_4284376_+	chorismate lyase	NA	NA	NA	NA
WP_000455251.1\|4284389_4285262_+	4-hydroxybenzoate octaprenyltransferase	NA	NA	NA	NA
WP_000017365.1\|4285360_4287781_-	glycerol-3-phosphate 1-O-acyltransferase PlsB	NA	NA	NA	NA
WP_000002900.1\|4287951_4288320_+	diacylglycerol kinase	NA	NA	NA	NA
WP_000646079.1\|4288428_4289037_+	repressor LexA	Q9G0C2	Lactococcus_phage	1.0e-13	38.0
WP_076936145.1\|4289215_4290541_+	MATE family efflux transporter DinF	NA	NA	NA	NA
WP_010989093.1\|4290537_4290651_+	hypothetical protein	NA	NA	NA	NA
WP_001030592.1\|4290672_4290882_+	CsbD family protein	NA	NA	NA	NA
WP_076936147.1\|4290981_4291497_-	zinc uptake transcriptional repressor Zur	NA	NA	NA	NA
WP_076936149.1\|4291743_4293054_+	conjugal transfer protein TraF	NA	NA	NA	NA
WP_001825318.1\|4293141_4294140_+\|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	NA	NA	NA	NA
WP_000891414.1\|4294307_4294550_+	envelope stress response protein PspG	NA	NA	NA	NA
WP_000235555.1\|4294724_4295708_-	quinone oxidoreductase	NA	NA	NA	NA
WP_000918353.1\|4295772_4297188_+	replicative DNA helicase	A0A1B0VG30	Salmonella_phage	7.0e-199	78.4
WP_001147297.1\|4297219_4298299_+	alanine racemase	A0A0P0YM39	Yellowstone_lake_mimivirus	1.2e-28	29.1
WP_000486910.1\|4298484_4299678_+	aromatic amino acid transaminase	NA	NA	NA	NA
WP_000724435.1\|4299864_4300578_+	acid phosphatase AphA	NA	NA	NA	NA
WP_076936151.1\|4300706_4301123_+	YjbQ family protein	NA	NA	NA	NA
WP_000155665.1\|4301125_4301482_+	MmcQ/YjbR family DNA-binding protein	NA	NA	NA	NA
WP_000146588.1\|4301482_4301821_-	hypothetical protein	NA	NA	NA	NA
WP_076936153.1\|4301807_4302263_-	hypothetical protein	NA	NA	NA	NA
WP_000357722.1\|4302394_4305220_-	excinuclease ABC subunit UvrA	A0A1B1IVR3	uncultured_Mediterranean_phage	0.0e+00	55.8
WP_000168322.1\|4305467_4305998_+	single-stranded DNA-binding protein SSB1	A0A0A0P1Q9	Enterobacteria_phage	3.9e-54	88.9
WP_076936155.1\|4307038_4307671_+	SPI-4 type I secretion system auxiliary protein SiiA	NA	NA	NA	NA
WP_023227582.1\|4307667_4309056_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA
WP_076936157.1\|4309045_4310365_+	SPI-4 type I secretion system protein SiiC	NA	NA	NA	NA
WP_023262289.1\|4310361_4311639_+	SPI-4 type I secretion system protein SiiD	NA	NA	NA	NA
WP_076936159.1\|4311655_4329571_+	Ig-like domain repeat protein	NA	NA	NA	NA
WP_069721153.1\|4329610_4331677_+	SPI-4 type I secretion system protein SiiF	F2Y2R6	Organic_Lake_phycodnavirus	6.3e-15	23.7
WP_149866878.1\|4331900_4333050_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	6.8e-51	42.3

DBSCAN-SWA_11

4553875 : 4563964

Enterobacteria_phage(88.89%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149866877.1\|4553875_4555025_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	6.8e-51	42.3
WP_023225535.1\|4555929_4556856_-	hypothetical protein	NA	NA	NA	NA
WP_076936275.1\|4557256_4557823_-	phage polarity suppression protein	Q7M2A1	Enterobacteria_phage	8.5e-55	61.6
WP_023225537.1\|4557839_4558085_-	ogr/Delta-like zinc finger family protein	Q7M294	Enterobacteria_phage	6.3e-31	77.8
WP_023209022.1\|4558081_4558819_-	hypothetical protein	Q7M2A2	Enterobacteria_phage	9.9e-80	64.9
WP_023209275.1\|4559369_4559636_+	AlpA family transcriptional regulator	Q7M299	Enterobacteria_phage	2.0e-30	71.6
WP_023209276.1\|4559632_4560235_+	host cell division inhibitor Icd-like protein	Q7M2A7	Enterobacteria_phage	6.2e-48	75.2
WP_023209277.1\|4560224_4560524_+	hypothetical protein	Q7M2A0	Enterobacteria_phage	1.4e-27	70.7
WP_023225539.1\|4560516_4560966_+	hypothetical protein	Q7M298	Enterobacteria_phage	4.1e-44	71.7
WP_023209279.1\|4561038_4561299_+	hypothetical protein	NA	NA	NA	NA
WP_023225540.1\|4561295_4561616_+	DUF5375 domain-containing protein	NA	NA	NA	NA
WP_076936277.1\|4561630_4563964_+	toprim domain-containing protein	Q7M2A8	Enterobacteria_phage	0.0e+00	83.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP019409

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection