CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP019410	Salmonella enterica subsp. enterica serovar Hillingdon str. N1529-D3 chromosome, complete genome	3 crisprs	WYL,DinG,cas3,DEDDh,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	0	19	5	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP019410_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP019410_1

2850712-2852204

TypeI-E

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRISPRCasFinder
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	PILER-CR

24 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of NZ_CP019410_1

>merge|NZ_CP019410|1|2850712-2852204|CRISPRCasFinder,CRT,PILER-CR
GTGTTTATCCCCGCTGGCACGGGGAACATTTTTCAGCCCTTGCCGACTGCGGAACGCCCCTCGGTTTATCCCCGCTGGCGCGGGGAACACATGGATGGCTCATATCCGGTTTCTGTTTCTGCCGGTTTATCCCCGCTGGCGCGGGGAACACGCGAAATAGTGGGGAAAAACCCCTGGTTAACCCGGTTTATCCCCGCTGGCACGGGGAACACATATTGATACTGTTCTCAAGCGCCGTTTTAGCCGGTTTATCCCCGCTGGCGCGGGGAACACGCGATCACCGTTCGGGCGAACTGGCGAATCACCGGTTTATCCCCGCTGGCGCGGGGAACACAGGCGAATAATCTCTAATAGTCTCAATTCGTTCGGTTTATCCCCGCTGGCGCGGGGAACACTCGATCAGCGCGTCAGCCGTAGTTGCAATACTCGGTTTATCCCCGCTGGCGCGGGGAACACGGTCTTTAACTCAGGCAGGTTGATATCCAGTACGGTTTATCCCCGCTGGCGCGGGGAACACGCCCACCGATAAAAACGGGCGTTGCCGCACAACGGTTTATCCCCGCTGGCGCGGGGAACACTTCGATCAGCCTGGTACCTAATACGTATGCTGCGGTTTATCCCCGCTGGCGCGGGGAACACGGCCTGATTGCGTAATGTTTGGAGAGTATTAACGGTTTATCCCCGCTGGCGCGGGGAACACCACCCGAAGGCGAAATGGAACAGCGCTACAGGCGGTTTATCCCCGCTGGCGCGGGGAACACCTCAGCAGGCTGGAGGAGATGATCAAAAATGGCGGTTTATCCCCGCTGGCGCGGGGAACACAGTTCAACGCTAAGAATTGCCTCACGCTATCTCGGTTTATCCCCGCTGGCGCGGGGAACACCCGCCGGCTGAGGATGTCCGCTGGACACCCAGCGGTTTATCCCCGCTGGCGCGGGGAACACAACAGTTAATGCGGCCAGTTCTCCGCCTGAGTCGGTTTATCCCCGCTGGCGCGGGGAACACCATTGCGGGCAGTTGTCCAGATCATCTAATTTCGGTTTATCCCCGCTGGCGCGGGGAACACTAACCGCGCAGTTTAGCGTTACACACGTAGGCCGGTTTATCCCCGCTGGCGCGGGGAACACTTTTGAAGAAGTCGCGGCGAGATGGTCGGTGGCGGTTTATCCCCGCTGGCGCGGGGAACACCTGACGGCTGCAATTAAAGCTATCCAAATTACCGGTTTATCCCCGCTGGCGCGGGGAACACTGGCTCGCATTGCAGGAACGACCTTTTTTAAACGGTTTATCCCCGCTGGCGCGGGGAACACTTTTACCACCTGTCAGGCAATAGCCTGGTTTCCGGTTTATCCCCGCTGGCGCGGGGAACACCCATCAGAATTTTGCGAATACTCGCCTGAAGGCGGTTTATCCCCGCTGGCGCGGGGAACACGTTTCGAGAAAAGGGATCAACTGAATAAATTGCGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP019410|1|1|2850712-2852204|CRISPRCasFinder
GTGTTTATCCCCGCTGGCACGGGGAACAT	TTTTCAGCCCTTGCCGACTGCGGAACGCCCCT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATGGATGGCTCATATCCGGTTTCTGTTTCTGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCGAAATAGTGGGGAAAAACCCCTGGTTAACC
CGGTTTATCCCCGCTGGCACGGGGAACAC	ATATTGATACTGTTCTCAAGCGCCGTTTTAGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCGATCACCGTTCGGGCGAACTGGCGAATCAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGGCGAATAATCTCTAATAGTCTCAATTCGTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCGATCAGCGCGTCAGCCGTAGTTGCAATACT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGTCTTTAACTCAGGCAGGTTGATATCCAGTA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCCCACCGATAAAAACGGGCGTTGCCGCACAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTCGATCAGCCTGGTACCTAATACGTATGCTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGCCTGATTGCGTAATGTTTGGAGAGTATTAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CACCCGAAGGCGAAATGGAACAGCGCTACAGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CTCAGCAGGCTGGAGGAGATGATCAAAAATGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGTTCAACGCTAAGAATTGCCTCACGCTATCT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCGCCGGCTGAGGATGTCCGCTGGACACCCAG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AACAGTTAATGCGGCCAGTTCTCCGCCTGAGT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CATTGCGGGCAGTTGTCCAGATCATCTAATTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TAACCGCGCAGTTTAGCGTTACACACGTAGGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTTTGAAGAAGTCGCGGCGAGATGGTCGGTGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CTGACGGCTGCAATTAAAGCTATCCAAATTAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGGCTCGCATTGCAGGAACGACCTTTTTTAAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTTTACCACCTGTCAGGCAATAGCCTGGTTTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCATCAGAATTTTGCGAATACTCGCCTGAAGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTTTCGAGAAAAGGGATCAACTGAATAAATTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP019410|1|1|2850712-2852204|CRT
GTGTTTATCCCCGCTGGCACGGGGAACAT	TTTTCAGCCCTTGCCGACTGCGGAACGCCCCT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATGGATGGCTCATATCCGGTTTCTGTTTCTGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCGAAATAGTGGGGAAAAACCCCTGGTTAACC
CGGTTTATCCCCGCTGGCACGGGGAACAC	ATATTGATACTGTTCTCAAGCGCCGTTTTAGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCGATCACCGTTCGGGCGAACTGGCGAATCAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGGCGAATAATCTCTAATAGTCTCAATTCGTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCGATCAGCGCGTCAGCCGTAGTTGCAATACT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGTCTTTAACTCAGGCAGGTTGATATCCAGTA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCCCACCGATAAAAACGGGCGTTGCCGCACAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTCGATCAGCCTGGTACCTAATACGTATGCTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGCCTGATTGCGTAATGTTTGGAGAGTATTAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CACCCGAAGGCGAAATGGAACAGCGCTACAGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CTCAGCAGGCTGGAGGAGATGATCAAAAATGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGTTCAACGCTAAGAATTGCCTCACGCTATCT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCGCCGGCTGAGGATGTCCGCTGGACACCCAG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AACAGTTAATGCGGCCAGTTCTCCGCCTGAGT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CATTGCGGGCAGTTGTCCAGATCATCTAATTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TAACCGCGCAGTTTAGCGTTACACACGTAGGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTTTGAAGAAGTCGCGGCGAGATGGTCGGTGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CTGACGGCTGCAATTAAAGCTATCCAAATTAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGGCTCGCATTGCAGGAACGACCTTTTTTAAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTTTACCACCTGTCAGGCAATAGCCTGGTTTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCATCAGAATTTTGCGAATACTCGCCTGAAGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTTTCGAGAAAAGGGATCAACTGAATAAATTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP019410|1|1|2850773-2852021|PILER-CR
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATGGATGGCTCATATCCGGTTTCTGTTTCTGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCGAAATAGTGGGGAAAAACCCCTGGTTAACC
CGGTTTATCCCCGCTGGCACGGGGAACAC	ATATTGATACTGTTCTCAAGCGCCGTTTTAGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCGATCACCGTTCGGGCGAACTGGCGAATCAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGGCGAATAATCTCTAATAGTCTCAATTCGTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCGATCAGCGCGTCAGCCGTAGTTGCAATACT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGTCTTTAACTCAGGCAGGTTGATATCCAGTA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCCCACCGATAAAAACGGGCGTTGCCGCACAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTCGATCAGCCTGGTACCTAATACGTATGCTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGCCTGATTGCGTAATGTTTGGAGAGTATTAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CACCCGAAGGCGAAATGGAACAGCGCTACAGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CTCAGCAGGCTGGAGGAGATGATCAAAAATGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGTTCAACGCTAAGAATTGCCTCACGCTATCT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCGCCGGCTGAGGATGTCCGCTGGACACCCAG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AACAGTTAATGCGGCCAGTTCTCCGCCTGAGT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CATTGCGGGCAGTTGTCCAGATCATCTAATTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TAACCGCGCAGTTTAGCGTTACACACGTAGGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTTTGAAGAAGTCGCGGCGAGATGGTCGGTGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CTGACGGCTGCAATTAAAGCTATCCAAATTAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGGCTCGCATTGCAGGAACGACCTTTTTTAAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019410.1\|WP_076727099.1\|2854142_2854889_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
NZ_CP019410.1\|WP_076727101.1\|2854899_2855958_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|273843
NZ_CP019410.1\|WP_000134241.1\|2843320_2844370_-\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
NZ_CP019410.1\|WP_001219245.1\|2844366_2844846_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
NZ_CP019410.1\|WP_000741653.1\|2844845_2845556_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
NZ_CP019410.1\|WP_076727103.1\|2855971_2856514_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
NZ_CP019410.1\|WP_000517480.1\|2845574_2845886_-\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
NZ_CP019410.1\|WP_076727111.1\|2862626_2863361_-\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NZ_CP019410.1\|WP_000281478.1\|2853510_2854161_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|273869
NZ_CP019410.1\|WP_076727109.1\|2861585_2862539_+\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
NZ_CP019410.1\|WP_001537530.1\|2846076_2846400_-\|DUF3561-family-protein	unknown	unknown	gnl\|CDD\|371891
NZ_CP019410.1\|WP_000144834.1\|2852593_2853514_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NZ_CP019410.1\|WP_001173663.1\|2846450_2847056_-\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
NZ_CP019410.1\|WP_001221537.1\|2842578_2843340_-\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
NZ_CP019410.1\|WP_023204590.1\|2852300_2852594_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	pfam09707_cas2_CAS-I-E	gnl\|CDD\|236930
NZ_CP019410.1\|WP_076727107.1\|2858481_2861142_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP019410.1\|WP_000372384.1\|2848491_2849400_-\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375
NZ_CP019410.1\|WP_076727097.1\|2849650_2850697_+\|aminopeptidase	unknown	unknown	gnl\|CDD\|182299
NZ_CP019410.1\|WP_001092256.1\|2847042_2848482_-\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
NZ_CP019410.1\|WP_076727105.1\|2856510_2858061_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192

Protein	Function_ID	Function_description	E-value
NZ_CP019410.1\|WP_076727099.1\|2854142_2854889_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	2.42346e-49
NZ_CP019410.1\|WP_076727101.1\|2854899_2855958_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	1.38629e-139
NZ_CP019410.1\|WP_000134241.1\|2843320_2844370_-\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
NZ_CP019410.1\|WP_001219245.1\|2844366_2844846_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	3.20925e-104
NZ_CP019410.1\|WP_000741653.1\|2844845_2845556_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	4.09575e-119
NZ_CP019410.1\|WP_076727103.1\|2855971_2856514_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	1.65119e-23
NZ_CP019410.1\|WP_000517480.1\|2845574_2845886_-\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	1.08865e-64
NZ_CP019410.1\|WP_076727111.1\|2862626_2863361_-\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	4.3117e-138
NZ_CP019410.1\|WP_000281478.1\|2853510_2854161_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	5.84644e-75
NZ_CP019410.1\|WP_076727109.1\|2861585_2862539_+\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
NZ_CP019410.1\|WP_001537530.1\|2846076_2846400_-\|DUF3561-family-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	3.31009e-48
NZ_CP019410.1\|WP_000144834.1\|2852593_2853514_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	3.37013e-157
NZ_CP019410.1\|WP_001173663.1\|2846450_2847056_-\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	4.61291e-146
NZ_CP019410.1\|WP_001221537.1\|2842578_2843340_-\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	7.64916e-147
NZ_CP019410.1\|WP_023204590.1\|2852300_2852594_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	1.3037e-64
NZ_CP019410.1\|WP_076727107.1\|2858481_2861142_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	0
NZ_CP019410.1\|WP_000372384.1\|2848491_2849400_-\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
NZ_CP019410.1\|WP_076727097.1\|2849650_2850697_+\|aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
NZ_CP019410.1\|WP_001092256.1\|2847042_2848482_-\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
NZ_CP019410.1\|WP_076727105.1\|2856510_2858061_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0

>NZ_CP019410.1|WP_076727097.1|2849650_2850697_+|aminopeptidase
MFSATRRFAVILALGVGFILPAQAASPGPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLDNLIVGDKLYFHSGKNTPEAVRTLTRDRALAIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS
>NZ_CP019410.1|WP_000372384.1|2848491_2849400_-|sulfate-adenylyltransferase-subunit-CysD
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF
>NZ_CP019410.1|WP_001092256.1|2847042_2848482_-|sulfate-adenylyltransferase-subunit-CysN
MNTILAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTLQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYREETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSANMRWYSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNLDFRGYAGTLASGSVKVGERIKVLPSGVESSVARIVTFDGDKEEACAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMAEQPLAPGQSYDVKLAGKKTRARIEAIRYQIDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVRELDERGATPPVEYSAFELELNALVRRHFPHWDARDLLGDKHGAA
>NZ_CP019410.1|WP_001173663.1|2846450_2847056_-|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVAAREQLHGHRGVVLWFTGLSGSGKSTVAGALEEALHQRGVSTYLLDGDNVRHGLCRDLGFSDADRQENIRRVGEVASLMADAGLIVLTAFISPHRAERQLVKERVGHDRFIEIYVNTPLAICEQRDPKGLYKKARAGELRNFTGIDAIYEAPDSPQVHLNGEQLVTNLVSQLLDLLRRRDIIRS
>NZ_CP019410.1|WP_001537530.1|2846076_2846400_-|DUF3561-family-protein
MRNSHNITFTRSDAFMVDDDATSAFPGAVVGFVSWLLALGIPFLLYGPNTLFFFLYTWPFFLALMPVSVIIGIALHLLVKGKILFSIMFTLLAVGALFGALFIWLLG
>NZ_CP019410.1|WP_000517480.1|2845574_2845886_-|cell-division-protein-FtsB
MGKLTLLLLALLVWLQYSLWFGKNGIHDYSRVNDDVVAQQATNAKLKARNDQLFAEIDDLNGGQEAIEERARNELSMTKPGETFYRLVPDASKRAATAGQTHR
>NZ_CP019410.1|WP_000741653.1|2844845_2845556_-|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MAATLLDVCAVVPAAGFGRRMQTECPKQYLSIGNKTILEHSVHALLAHPRVTRVVIAISPGDHRFAQLPLANHPQITVVDGGNERADSVLAGLQAVAKAQWVLVHDAARPCLHQDDLARLLTISENSRVGGILASPVRDTMKRGEPGKNAIAHTVERADLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPALVEGRADNIKVTRPEDLALAEFYLTRTIHQEKA
>NZ_CP019410.1|WP_001219245.1|2844366_2844846_-|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDEVNVKATTTEKLGFTGRGEGIACEAVALLMKAAK
>NZ_CP019410.1|WP_000134241.1|2843320_2844370_-|tRNA-pseudouridine(13)-synthase-TruD
MTEFDNLTWLHGKPQGSGLLKANPEDFVVVEDLGFRPDGEGEHILLRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDFSAFQLEGCKVLEYARHKRKLRLGALKGNAFTLVLREISDRRDVETRLQAIRDGGVPNYFGAQRFGIGGSNLQGALRWAQSNAPVRDRNKRSFWLSAARSALFNQIVHQRLKKPDFNQVVDGDALQLAGRGSWFVATSEELPELQRRVDEKELMITASLPGSGEWGTQRAALAFEQDAIAQETVLQSLLLREKVEASRRAMLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVVRELINTMGDYAHIAE
>NZ_CP019410.1|WP_001221537.1|2842578_2843340_-|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLNGYQHYDTAAAVTCALLRGLSREPLRTGRILNVNVPDLPLAQIKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVDEGYVSVTPLHVDLTAHSAHDVVSDWLDSVGVGTQW
>NZ_CP019410.1|WP_023204590.1|2852300_2852594_-|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMVVVVTENVPPRLRGRLAVWLLEVRAGVYVGDTSKRIREMIWQQITQLGGCGNAVMAWATNTESGFEFQTWGENRRIPVDLDGLRLVSFLPVENQ
>NZ_CP019410.1|WP_000144834.1|2852593_2853514_-|type-I-E-CRISPR-associated-endonuclease-Cas1
MTFVPLNPIPLKDRTSMIFLQYGQIDVLDGAFVLIDKTGVRTHIPVGSVACIMLEPGTRVSHAAVHLASTVGTLLVWVGEAGVRVYSSGQPGGARADKLLYQAKLALDDDLRLKVVRKMYELRFREPPPARRSVEQLRGIEGSRVRATYALLAKQYGVKWHGRNYDPKDWEKGDVVNRCISAATSCLYGISEAAILAAGYAPAIGFIHSGKPLSFVYDIADIIKFESVVPKAFEIAARHPAEPDKEVRLACRDIFRSSKLTGKLIPLIEEVLAAGEIEPPQPASDMLPPAIPEPESLGDSGHRGHG
>NZ_CP019410.1|WP_000281478.1|2853510_2854161_-|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRITLHTSELSPAQLLHLVERGEYVMHQWLWDLFPGGKERQFLYRREELQGAFRFFVLSQEQPAASAIFDVQTRPFAPMLSAGQTLRFNLRANPTVCKNGKRHDLLMEAKRQRKTQGDSQDIWSYQQQAALTWLARQGEQNGFTLRETSVDAYRQQQIRREKSRQMIQFSSVDYTGVLVLNDPVLFLQRLAQGYGKSRAFGCGMMMIKPGDDA
>NZ_CP019410.1|WP_076727099.1|2854142_2854889_-|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSQYLVFQLHGPMASWGVDAPGEVRHSHELPSRSALLGLLAAALGIRRDEEERLNAFNRHYQFLLCASGNPRWARDYHTVQMPKEVRKARYFSRREELQDPELLSALISRRDYYTDAWWMIAVSATPDAPYTLAQLQAALQHPVFPLYLGRKSHPLALPLAPQLLEGSAADVLREAYRWYQDKFNTLKLTLPGLQNECWWEGEHDGLTANKILRRRDMPLSRQQWLFGERSVNQGPWLRKEDACISQE
>NZ_CP019410.1|WP_076727101.1|2854899_2855958_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRISSQSLKRAWRTSELFEQALAGNIGIRTGRIAREAAQILIESGIDAKKAVEYVEKIANCFGKVKAEKKPKDELTNAETEQLVHISPAEFEGVKALAHRLAEEKRAPKEEELALLRKDRMAVDIAMFGRMLANKPDFNVEAACQVAHAFGVSETIVEDDFFTAVDDLRQASAEDAGAGHLGETGFGSALFYTYICIDKDLLVKNLNGNEELANKTLRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTDQLNVAVKRITSLHKNMNKVYGQRTDTANFDVMNQQGSMKDVLDFICA
>NZ_CP019410.1|WP_076727103.1|2855971_2856514_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSIMQEDHKATLRKWHEDLQEKRGARASLRRSKTVNEACLSEGFRSLLMQTHTLWKIDGQEWRVTALALTAALAANVKAIDERQKFAAQLNGVMSELRFTRLCAVKTPDELLRQLRRAVKLSNGAVNLFSLAEDIFCWCREQDDLLSHHRRQQRSTEFLRIRWALEYYQAGDTDNDNEQD
>NZ_CP019410.1|WP_076727105.1|2856510_2858061_-|type-I-E-CRISPR-associated-protein-Cse1/CasA
MGSLLTTPWLPVRFKDGSTGKLAPVNLADENVVDIAATRADLQGAAWQFLLGLLQCSIAPKNSARWEDIWFDGLHADALHKALAPLEHAFQFGAESPSFMQDFEPLTGEKVSIASLLPEIPGAQTTKFNKDHFVKRGVTERFCPHCAALALFSLQLNAPAGGKGYRTGLRGGGPLTTLVELQEYQGERQTPLWRKLWLNVMPQDTADLPLPDQCDATVFPWLAATRTSEQANAVTTPEQVNKLQAYWGMPRRIRLDFATLQSGCCDICGAESDELLGFMTVKNYGVNYDGWRHPLTPYRAPVKDQNAFFSVKPQPGGLIWRDWLGLSQNNQTEANYESPAQVVKVFNARSLTDVKAGIWGFGADFDNMKIRCWYEHHFPLLMTEGLIPDLRKATQTATRLLSLLRSALKEAWFANAKDARGDFSFIDIDFWNLTQGRFLNLIHDLENGHKPDERLNKWQRELWLFTRRYFDDRVFTNPYESSDLKRIMTARKKYFTSSAEKQSAKAAKAKKQEAAE
>NZ_CP019410.1|WP_076727107.1|2858481_2861142_-|CRISPR-associated-helicase/endonuclease-Cas3
MSIYHYWGKSRRGETDGGDDYHLLCWHSLDVAAVGYWMVINNIYFIDHYLKKLGIQDKEQAAQFFAWILCWHDIGKFAHSFQQLYRHEALNVFNEPTRHYEKIAHTTLGYELWNSWLSECPELFPPSSLSVRKSKRVMALWMPVTTGHHGRPPEAIQELDHFRQQDKDAARDFLLRIKALFPLITLPEAWDEDEGIAQFQQLSWFISAAVVLADWTGSASRYFPRTAEEMPVDTYWQQALTKAQTAITLFPSAANVSAFTGIETLFPFIQHPTPLQQKALELDINVDGAQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLYFGLPTMATANAMFERMANTWLALYQPDSRPSLILAHSARRLMDRFNQSIWSVTLSGTEEPDEAQPYSQGCAAWFADSNKKALLAEVGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAWMSRILEGLIERQASNGNATILLSATLSQQQRDKLVAAFSRGVRRSVQAPLLGHDDYPWLTQVTQTELISQRVDTRKEVERSVDIGWLHSEESCLERIGEAVEKGNCIAWIRNSVDDAIRIYRQLQLSKVVATENLLLFHSRFAFHDRQRIESQTLNLFGKQSGAQRAGKVIIATQVIEQSLDIDCDEMISDLAPVDLLIQRAGRLQRHIRDRNGLVKKSGQDERETPVLRILAPEWDDAPRENWLSSAMRNSAYVYPDHGRMWLTQRILREQGTIRMPQSARLLIESVYGEDVNMPVGFAKTEQLQEGKFYCDRAFAGQMLLNFAPGYCAEISDSLPEKMSTRLAEESVTLWLAKIVDSVVTPYASGEHAWEMSVLRVRQSWWEKHNGEFERLKGESFQQWCVEQHQNKDFAIVIVVTDSAACGYSATEGLTGKMG
>NZ_CP019410.1|WP_076727109.1|2861585_2862539_+|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKFQDHFRAEKKDHALKVLHTIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLFMVGDTVISQSNIKDILNISDDTVIESMSREERQLFLQICEVIGAKMTWHPELLQESISTLRKEVTGNAQIKAAVYEMMRPAEAPDHPLVEWQDSLTEDEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFAEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLT
>NZ_CP019410.1|WP_076727111.1|2862626_2863361_-|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNKLPKVDRVLALAEANAQLETLTAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQVRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELKAQTWFAGLRREQSGSRAHLPVLAIQRGIFKVLPIIDWDNRTVYQYLQKQGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG

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Crispr_ID: NZ_CP019410_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP019410_2

2868729-2869917

TypeI-E

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRISPRCasFinder
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	PILER-CR

19 spacers

cas3,cas8e,cse2gr11,cas7

The CRISPR arrays of NZ_CP019410_2

>merge|NZ_CP019410|2|2868729-2869917|CRISPRCasFinder,CRT,PILER-CR
ACGGCTATCCCCGCTGGCGCGGGGAACACGTTACCGTTGGCGTAACGCTGAATTGTTGGTACGGTTTATCCCCGCTGACGCGGGGAACACTTGCCGACCAGATCAATGACAACGCTAACCTTCGGTTTATCCCCGCTGGCGCGGGGAACACGCATTTAAGGTTTCTGATGGCTCGCAAAACGTCGGTTTATCCCCGCTGACGCGGGGAACACAGCATCGATCCCTTCATAGTGCCCCCAAACTCCGGTTTATCCCCGCTGGCGCGGGGAACACATCACAAACCATATGGGGACTATGTACGGCATCGGTTTATCCCCGCTGGCACGGGGAACACATAGATGGCGCCAACACCGAGAATCGGGATTCCGGTTTATCCCCGCTGGCGCGGGGAACACAGCACGAAGCGTGGTGTGAGGGTTCTGACGGTCGGTTTATCCCCGCTGGCGCGGGGAACACGCTGGATTAAAGCCAGTGACCGCGACATCTCGCGGTTTATCCCCGCTGGCGCGGGGAACACCCTGACCTGACCACGCCTGCCGACGAACGGACCGGTTTATCCCCGCTGGCGCGGGGAACACGCTCATTGCGAGTTTTATTCCTACATTGACTGCCGGTTTATCCCCGCTGGCGCGGGGAACACTTCAGCGTGATCGGTTCGGCTGTATTCAACACCGGTTTATCCCCGCTGGCGCGGGGAACACATGAGATATTCACTCATCTGGACGCAGGAAAGCGGTTTATCCCCGCTGGCGCGGGGAACACTCCCAAGCGAGCGTTTACAAATGGCTATATCACGGTTTATCCCCGCTGGCGCGGGGAACACTTTGGTTTACCGCCGATTACCGGGAAAAAAGCCGGTTTATCCCCGCTGGCGCGGGGAACACGCCTTCCTGTAATTCAGCATACTTCGACGTACCGGTTTATCCCCGCTGGCGCGGGGAACACTTTCGCCTGGTTATGCCCGGCGTTTTTGTTGCCGGTTTATCCCCGCTGGCGCGGGGAACACGAGGTCGCAGATGGCGAGGGCGACGTCATTAACGGTTTATCCCCGCTGGCGCGGGGAACACCCCGCTGACGATAACCTGATATTCGTCGTCGCCGGTTTATCCCCGCTGGCGCGGGGAACACTGGCCCACCACTTATCCAGTTTTTAGATAAGTCGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP019410|2|2|2868729-2869917|CRISPRCasFinder
ACGGCTATCCCCGCTGGCGCGGGGAACAC	GTTACCGTTGGCGTAACGCTGAATTGTTGGTA
CGGTTTATCCCCGCTGACGCGGGGAACAC	TTGCCGACCAGATCAATGACAACGCTAACCTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCATTTAAGGTTTCTGATGGCTCGCAAAACGT
CGGTTTATCCCCGCTGACGCGGGGAACAC	AGCATCGATCCCTTCATAGTGCCCCCAAACTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATCACAAACCATATGGGGACTATGTACGGCAT
CGGTTTATCCCCGCTGGCACGGGGAACAC	ATAGATGGCGCCAACACCGAGAATCGGGATTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGCACGAAGCGTGGTGTGAGGGTTCTGACGGT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCTGGATTAAAGCCAGTGACCGCGACATCTCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCTGACCTGACCACGCCTGCCGACGAACGGAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCTCATTGCGAGTTTTATTCCTACATTGACTGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTCAGCGTGATCGGTTCGGCTGTATTCAACAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATGAGATATTCACTCATCTGGACGCAGGAAAG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCCCAAGCGAGCGTTTACAAATGGCTATATCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTTGGTTTACCGCCGATTACCGGGAAAAAAGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCCTTCCTGTAATTCAGCATACTTCGACGTAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTTCGCCTGGTTATGCCCGGCGTTTTTGTTGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GAGGTCGCAGATGGCGAGGGCGACGTCATTAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCCGCTGACGATAACCTGATATTCGTCGTCGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGGCCCACCACTTATCCAGTTTTTAGATAAGT
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP019410|2|2|2868729-2869917|CRT
ACGGCTATCCCCGCTGGCGCGGGGAACAC	GTTACCGTTGGCGTAACGCTGAATTGTTGGTA
CGGTTTATCCCCGCTGACGCGGGGAACAC	TTGCCGACCAGATCAATGACAACGCTAACCTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCATTTAAGGTTTCTGATGGCTCGCAAAACGT
CGGTTTATCCCCGCTGACGCGGGGAACAC	AGCATCGATCCCTTCATAGTGCCCCCAAACTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATCACAAACCATATGGGGACTATGTACGGCAT
CGGTTTATCCCCGCTGGCACGGGGAACAC	ATAGATGGCGCCAACACCGAGAATCGGGATTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGCACGAAGCGTGGTGTGAGGGTTCTGACGGT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCTGGATTAAAGCCAGTGACCGCGACATCTCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCTGACCTGACCACGCCTGCCGACGAACGGAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCTCATTGCGAGTTTTATTCCTACATTGACTGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTCAGCGTGATCGGTTCGGCTGTATTCAACAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATGAGATATTCACTCATCTGGACGCAGGAAAG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCCCAAGCGAGCGTTTACAAATGGCTATATCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTTGGTTTACCGCCGATTACCGGGAAAAAAGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCCTTCCTGTAATTCAGCATACTTCGACGTAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTTCGCCTGGTTATGCCCGGCGTTTTTGTTGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GAGGTCGCAGATGGCGAGGGCGACGTCATTAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCCGCTGACGATAACCTGATATTCGTCGTCGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGGCCCACCACTTATCCAGTTTTTAGATAAGT
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP019410|2|2|2868790-2869917|PILER-CR
CGGTTTATCCCCGCTGACGCGGGGAACAC	TTGCCGACCAGATCAATGACAACGCTAACCTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCATTTAAGGTTTCTGATGGCTCGCAAAACGT
CGGTTTATCCCCGCTGACGCGGGGAACAC	AGCATCGATCCCTTCATAGTGCCCCCAAACTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATCACAAACCATATGGGGACTATGTACGGCAT
CGGTTTATCCCCGCTGGCACGGGGAACAC	ATAGATGGCGCCAACACCGAGAATCGGGATTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGCACGAAGCGTGGTGTGAGGGTTCTGACGGT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCTGGATTAAAGCCAGTGACCGCGACATCTCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCTGACCTGACCACGCCTGCCGACGAACGGAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCTCATTGCGAGTTTTATTCCTACATTGACTGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTCAGCGTGATCGGTTCGGCTGTATTCAACAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATGAGATATTCACTCATCTGGACGCAGGAAAG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCCCAAGCGAGCGTTTACAAATGGCTATATCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTTGGTTTACCGCCGATTACCGGGAAAAAAGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCCTTCCTGTAATTCAGCATACTTCGACGTAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTTCGCCTGGTTATGCCCGGCGTTTTTGTTGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GAGGTCGCAGATGGCGAGGGCGACGTCATTAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCCGCTGACGATAACCTGATATTCGTCGTCGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGGCCCACCACTTATCCAGTTTTTAGATAAGT
CGGTTTATCCCCGCTGGCGCGGGGAACAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019410.1\|WP_076727103.1\|2855971_2856514_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
NZ_CP019410.1\|WP_000108313.1\|2867383_2867746_+\|6-carboxytetrahydropterin-synthase-QueD	unknown	unknown	gnl\|CDD\|238264
NZ_CP019410.1\|WP_076727116.1\|2867833_2868631_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|224158
NZ_CP019410.1\|WP_076727105.1\|2856510_2858061_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
NZ_CP019410.1\|WP_076727101.1\|2854899_2855958_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|273843
NZ_CP019410.1\|WP_076727111.1\|2862626_2863361_-\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NZ_CP019410.1\|WP_000210454.1\|2874266_2875067_-\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
NZ_CP019410.1\|WP_076727109.1\|2861585_2862539_+\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
NZ_CP019410.1\|WP_076727113.1\|2863436_2865149_-\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
NZ_CP019410.1\|WP_000706477.1\|2882979_2884122_-\|glycerate-kinase	unknown	unknown	gnl\|CDD\|224840
NZ_CP019410.1\|WP_072196359.1\|2876099_2876456_-\|type-II-toxin-antitoxin-system-ParD-family-antitoxin	unknown	unknown	gnl\|CDD\|226136
NZ_CP019410.1\|WP_076727118.1\|2878826_2880122_-\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|237291
NZ_CP019410.1\|WP_000186400.1\|2880179_2882936_+\|two-component-sensor-histidine-kinase-BarA	unknown	unknown	gnl\|CDD\|236848
NZ_CP019410.1\|WP_076727107.1\|2858481_2861142_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP019410.1\|WP_000210863.1\|2872401_2874039_-\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437
NZ_CP019410.1\|WP_076727115.1\|2865148_2866948_-\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|182862
NZ_CP019410.1\|WP_000226841.1\|2876540_2878775_-\|GTP-diphosphokinase	unknown	unknown	gnl\|CDD\|182797
NZ_CP019410.1\|WP_001199961.1\|2870213_2870885_-\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
NZ_CP019410.1\|WP_000107113.1\|2884199_2885540_-\|glucarate-dehydratase	unknown	unknown	gnl\|CDD\|211799
NZ_CP019410.1\|WP_000036734.1\|2871020_2872319_-\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617

Protein	Function_ID	Function_description	E-value
NZ_CP019410.1\|WP_076727103.1\|2855971_2856514_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	1.65119e-23
NZ_CP019410.1\|WP_000108313.1\|2867383_2867746_+\|6-carboxytetrahydropterin-synthase-QueD	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	2.78454e-58
NZ_CP019410.1\|WP_076727116.1\|2867833_2868631_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|224158	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only].	3.91154e-102
NZ_CP019410.1\|WP_076727105.1\|2856510_2858061_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
NZ_CP019410.1\|WP_076727101.1\|2854899_2855958_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	1.38629e-139
NZ_CP019410.1\|WP_076727111.1\|2862626_2863361_-\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	4.3117e-138
NZ_CP019410.1\|WP_000210454.1\|2874266_2875067_-\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	1.36327e-159
NZ_CP019410.1\|WP_076727109.1\|2861585_2862539_+\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
NZ_CP019410.1\|WP_076727113.1\|2863436_2865149_-\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
NZ_CP019410.1\|WP_000706477.1\|2882979_2884122_-\|glycerate-kinase	gnl\|CDD\|224840	COG1929, COG1929, Glycerate kinase [Carbohydrate transport and metabolism].	0
NZ_CP019410.1\|WP_072196359.1\|2876099_2876456_-\|type-II-toxin-antitoxin-system-ParD-family-antitoxin	gnl\|CDD\|226136	COG3609, COG3609, Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain [Transcription].	1.09987e-19
NZ_CP019410.1\|WP_076727118.1\|2878826_2880122_-\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|237291	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD.	0
NZ_CP019410.1\|WP_000186400.1\|2880179_2882936_+\|two-component-sensor-histidine-kinase-BarA	gnl\|CDD\|236848	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional.	0
NZ_CP019410.1\|WP_076727107.1\|2858481_2861142_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	0
NZ_CP019410.1\|WP_000210863.1\|2872401_2874039_-\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NZ_CP019410.1\|WP_076727115.1\|2865148_2866948_-\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
NZ_CP019410.1\|WP_000226841.1\|2876540_2878775_-\|GTP-diphosphokinase	gnl\|CDD\|182797	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional.	0
NZ_CP019410.1\|WP_001199961.1\|2870213_2870885_-\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	1.43874e-155
NZ_CP019410.1\|WP_000107113.1\|2884199_2885540_-\|glucarate-dehydratase	gnl\|CDD\|211799	TIGR03247, glucar-dehydr, glucarate dehydratase. Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (GenProp0716). The E. coli enzyme has been well-characterized.	0
NZ_CP019410.1\|WP_000036734.1\|2871020_2872319_-\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0

>NZ_CP019410.1|WP_076727116.1|2867833_2868631_-|MBL-fold-metallo-hydrolase
MALRIRVLLENHKGAGADKSLKARPGLSLLVEDESTSILFDTGPDGSFMQNALAMGIDLSDVSAVVLSHGHYDHCGGVPWLPDNSRIICHPDIARERYAAMTFLGITRKIKKLSCEVDYSRYRMMYTRDPLPIGENFIWSGEIPVVAPEAYGIFGGHDAEPDSILDEGVLIYQSAKGLVIITGCGHRGIANIVRHCQNITGIKRIYALVGGFHLRCASPFTLWRVRRFLQEHKPEKLCGCHCTGAWGRLWLPEITAPATGDVLRF
>NZ_CP019410.1|WP_000108313.1|2867383_2867746_+|6-carboxytetrahydropterin-synthase-QueD
MSTTLYKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFADLKAAFKPTYDRLDHYYLNDIPGLSNPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCVYRGE
>NZ_CP019410.1|WP_076727115.1|2865148_2866948_-|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit
MTTPAPLTGLLPLNPEQLARLQAATTDLTPEQLAWVSGYFWGVLNPRSGAVAVTPAPEGKMSGVTLISASQTGNARRVAEALRDDLLAANLNVTLVNAGDYKFKQIASEKLLVIVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDVLKSRAPVAAPSQSVATGAVNDIHTSPYTKDAPLTATLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVDGKTLPLAEALEWHFELTVNTANIVENYATLTRSESLLPLVGDKAQLQHYAATTPIVDMVRFSPAQLDAQALIDLLRPLTPRLYSIASSQAETENEVHVTVGVVRYDIEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPQTPVIMIGPGTGIAPFRAFMQQRAADGAEGKNWLFFGNPHFTEDFLYQVEWQRYVKEGLLSRIDLAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDARRMAADVEKALLEVIAEFGGMDLESADEYLSELRVERRYQRDVY
>NZ_CP019410.1|WP_076727113.1|2863436_2865149_-|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGATYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGLETFKAEVERRAGITFEPIRPYEFTGRGDRIGWVKGIDDKWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQKAKIETLARDHGLMNAVKPQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGNRIGTRIPRMYQENITEPDILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>NZ_CP019410.1|WP_076727111.1|2862626_2863361_-|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNKLPKVDRVLALAEANAQLETLTAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQVRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELKAQTWFAGLRREQSGSRAHLPVLAIQRGIFKVLPIIDWDNRTVYQYLQKQGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>NZ_CP019410.1|WP_076727109.1|2861585_2862539_+|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKFQDHFRAEKKDHALKVLHTIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLFMVGDTVISQSNIKDILNISDDTVIESMSREERQLFLQICEVIGAKMTWHPELLQESISTLRKEVTGNAQIKAAVYEMMRPAEAPDHPLVEWQDSLTEDEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFAEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLT
>NZ_CP019410.1|WP_076727107.1|2858481_2861142_-|CRISPR-associated-helicase/endonuclease-Cas3
MSIYHYWGKSRRGETDGGDDYHLLCWHSLDVAAVGYWMVINNIYFIDHYLKKLGIQDKEQAAQFFAWILCWHDIGKFAHSFQQLYRHEALNVFNEPTRHYEKIAHTTLGYELWNSWLSECPELFPPSSLSVRKSKRVMALWMPVTTGHHGRPPEAIQELDHFRQQDKDAARDFLLRIKALFPLITLPEAWDEDEGIAQFQQLSWFISAAVVLADWTGSASRYFPRTAEEMPVDTYWQQALTKAQTAITLFPSAANVSAFTGIETLFPFIQHPTPLQQKALELDINVDGAQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLYFGLPTMATANAMFERMANTWLALYQPDSRPSLILAHSARRLMDRFNQSIWSVTLSGTEEPDEAQPYSQGCAAWFADSNKKALLAEVGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAWMSRILEGLIERQASNGNATILLSATLSQQQRDKLVAAFSRGVRRSVQAPLLGHDDYPWLTQVTQTELISQRVDTRKEVERSVDIGWLHSEESCLERIGEAVEKGNCIAWIRNSVDDAIRIYRQLQLSKVVATENLLLFHSRFAFHDRQRIESQTLNLFGKQSGAQRAGKVIIATQVIEQSLDIDCDEMISDLAPVDLLIQRAGRLQRHIRDRNGLVKKSGQDERETPVLRILAPEWDDAPRENWLSSAMRNSAYVYPDHGRMWLTQRILREQGTIRMPQSARLLIESVYGEDVNMPVGFAKTEQLQEGKFYCDRAFAGQMLLNFAPGYCAEISDSLPEKMSTRLAEESVTLWLAKIVDSVVTPYASGEHAWEMSVLRVRQSWWEKHNGEFERLKGESFQQWCVEQHQNKDFAIVIVVTDSAACGYSATEGLTGKMG
>NZ_CP019410.1|WP_076727105.1|2856510_2858061_-|type-I-E-CRISPR-associated-protein-Cse1/CasA
MGSLLTTPWLPVRFKDGSTGKLAPVNLADENVVDIAATRADLQGAAWQFLLGLLQCSIAPKNSARWEDIWFDGLHADALHKALAPLEHAFQFGAESPSFMQDFEPLTGEKVSIASLLPEIPGAQTTKFNKDHFVKRGVTERFCPHCAALALFSLQLNAPAGGKGYRTGLRGGGPLTTLVELQEYQGERQTPLWRKLWLNVMPQDTADLPLPDQCDATVFPWLAATRTSEQANAVTTPEQVNKLQAYWGMPRRIRLDFATLQSGCCDICGAESDELLGFMTVKNYGVNYDGWRHPLTPYRAPVKDQNAFFSVKPQPGGLIWRDWLGLSQNNQTEANYESPAQVVKVFNARSLTDVKAGIWGFGADFDNMKIRCWYEHHFPLLMTEGLIPDLRKATQTATRLLSLLRSALKEAWFANAKDARGDFSFIDIDFWNLTQGRFLNLIHDLENGHKPDERLNKWQRELWLFTRRYFDDRVFTNPYESSDLKRIMTARKKYFTSSAEKQSAKAAKAKKQEAAE
>NZ_CP019410.1|WP_076727103.1|2855971_2856514_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSIMQEDHKATLRKWHEDLQEKRGARASLRRSKTVNEACLSEGFRSLLMQTHTLWKIDGQEWRVTALALTAALAANVKAIDERQKFAAQLNGVMSELRFTRLCAVKTPDELLRQLRRAVKLSNGAVNLFSLAEDIFCWCREQDDLLSHHRRQQRSTEFLRIRWALEYYQAGDTDNDNEQD
>NZ_CP019410.1|WP_076727101.1|2854899_2855958_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRISSQSLKRAWRTSELFEQALAGNIGIRTGRIAREAAQILIESGIDAKKAVEYVEKIANCFGKVKAEKKPKDELTNAETEQLVHISPAEFEGVKALAHRLAEEKRAPKEEELALLRKDRMAVDIAMFGRMLANKPDFNVEAACQVAHAFGVSETIVEDDFFTAVDDLRQASAEDAGAGHLGETGFGSALFYTYICIDKDLLVKNLNGNEELANKTLRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTDQLNVAVKRITSLHKNMNKVYGQRTDTANFDVMNQQGSMKDVLDFICA
>NZ_CP019410.1|WP_001199961.1|2870213_2870885_-|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILAKTKESDKWGAASSEDLLAVINRQGYTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA
>NZ_CP019410.1|WP_000036734.1|2871020_2872319_-|phosphopyruvate-hydratase
MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVGAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTENKSNFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKGKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>NZ_CP019410.1|WP_000210863.1|2872401_2874039_-|CTP-synthase-(glutamine-hydrolyzing)
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQLAVDIGREHALFMHLTLVPYLAAAGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISMKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIYEEANPAGEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVTVNIKLIDSQDVETRGVEILKDLDAILIPGGFGYRGVEGKIATARYARENNIPYLGICLGMQVALIEFARNVAGMDNANSTEFVPDCKYPVVALITEWRDEDGNVEVRSEKSDLGGTMRLGAQQCQLSDDSLVRQLYGASTIVERHRHRYEVNNMLLKQIEAAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAANEHQKRQAK
>NZ_CP019410.1|WP_000210454.1|2874266_2875067_-|nucleoside-triphosphate-pyrophosphohydrolase
MTTNHQIDRLLTLMQRLRDPENGCPWDKEQTFASIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFGELSADNSEEVLARWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCSNVGFDWTTLGPVVDKVYEEIDEVMFEARQAVVDQAKLEEEMGDLLFATVNMARHLGTKAELALQKANDKFERRFREVERIVAARGLEMTGVDLETMEEVWQEVKRQEIDL
>NZ_CP019410.1|WP_072196359.1|2876099_2876456_-|type-II-toxin-antitoxin-system-ParD-family-antitoxin
MFLTYISFPVYSYVRFILTVEAVMARTMTVDLGDELREFIESLIESGDYRTQSEVIRESLRLLREKQAESRLLALRELLAEGLNSGEPQAWEKDAFLRKVKTGMIKPDENGKINAKGQ
>NZ_CP019410.1|WP_000226841.1|2876540_2878775_-|GTP-diphosphokinase
MVAVRSAHINKAGEFDPKKWIASLGISSQQSCERLAETWAYCLQQTQGHPDADLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSIVTLIHGVRDMAAIRQLNATHNDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKEAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPAEYKRIAKLLHERRLDREHYIEEFVGHLRAEMKNEGVQAEVYGRPKHIYSIWRKMQKKHLAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAHWKYKEGAASGGVRSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQVEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNILAGRQILDDELAHLGISLKEAEKHLLPRYNFNELEELLAAIGGGDIRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKTYAPQNRRKDDGRVVVEGVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPERIVEAVWGESYSAGYSLVVRVQANDRSGLLRDITTILANEKVNVLGVASRSDIKQQIATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLHGG
>NZ_CP019410.1|WP_076727118.1|2878826_2880122_-|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MAQFYSAKRRVTTRQIITVKVNDLDSFGQGVARHNGKALFIPGLLPEESAEVIITEDKKQFARARVSRRLNDSPERETPRCPHFGVCGGCQQQHVSIALQQRSKSAALARLMKHEVNDIIAGAPWGYRRRARLSLNCPPDKPLQMGFRKAGSSNIVNVEQCPVLAPQLEALLPRIRACLASLHGTRHLGHVELVQAGSGTLMILRHTAPLSAADKEKLERFSHSEGLSLFLAPFSEILETVSGEAPWYDSHGLRLAFSPRDFIQVNEVVNQQMVARALEWLDVRAEDRVLDLFCGMGNFTLPLATRAASVVGVEGVPALVEKGRENAIRNGLHNVTFFHENLEEDVTKQPWAKNGFDKVLLDPARAGATGVMRHIIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLESMVLFERM
>NZ_CP019410.1|WP_000186400.1|2880179_2882936_+|two-component-sensor-histidine-kinase-BarA
MTNYSLRARMMILILAPTVLIGLLLSIFFVVHRYNDLQRQLEDAGASIIEPLAVSSEYGMNLQNRESIGQLISVLHRRHSDIVRAISVYDDHNRLFVTSNFHLDPSQMQLPAGAPFPRRLSVDRHGDIMILRTPIISESYSPDESAIADAKNTKNMLGYVALELDLKSVRLQQYKEIFISSVMMLFCIGIALIFGWRLMRDVTGPIRNMVNTVDRIRRGQLDSRVEGFMLGELDMLKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNVIGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNVIIDGPSTACLAGKRLAYVEPNATAAQCTLDLLSDTPVEVVYSPTFSALPLAHYDIMILSVPVTFREPLTMQHERLAKAASMTDFLLLALPCHAQINAEKLKQGGAAACLLKPLTSTRLLPALTEYCQLNHHPEPLLMDTSKITMTVMAVDDNPANLKLIGALLEDKVQHVELCDSGHQAVDRAKQMQFDLILMDIQMPDMDGIRACELIHQLPHQQQTPVIAVTAHAMAGQKEKLLSAGMNDYLAKPIEEEKLHNLLLRYKPGANVAARLMAPEPAEFIFNPNATLDWQLALRQAAGKPDLARDMLQMLIDFLPEVRNKIEEQLVGENPNGLVDLVHKLHGSCGYSGVPRMKNLCQLIEQQLRSGVHEEELEPEFLELLDEMDNVAREAKKILG
>NZ_CP019410.1|WP_000706477.1|2882979_2884122_-|glycerate-kinase
MKIVIAPDSYKESLSALEVATAIEQGFREIWPDADYLKLPLADGGEGTVEAMVEATAGRIVHVEVTGPLGHRVNAFYGLSGDARSAFIEMAAASGLEQVPPAQRDPLKTTSWGTGELIRHALDAGVEHIIIGIGGSATNDGGAGMVQALGARLRDAQGNDIAQGGIGLETLASIDISGLDKRLSACHIEVACDVTNPLTGKEGASAVFGPQKGATPEMIERLDTALTRYAHLIARDLHVDVLDLAGGGAAGGMGAALYAFCGAQLRRGIEIVTDALHLEACLADADLVITGEGRIDSQTIHGKVPIGVANIAKRYNKPVIGIAGSLTADVGVVHEHGLDAVFSVIYTICTLEDALKNASENVRMTARNVAATLKAGQQLR
>NZ_CP019410.1|WP_000107113.1|2884199_2885540_-|glucarate-dehydratase
MSTQFTTPVVTEMQVIPVAGHDSMLMNLSGAHAPFFTRNIVIIKDNSGHTGVGEIPGGEKIRKTLEDAIPLVVGKTLGEYKNVLTAVRNQFADRDAGGRGLQTFDLRTTIHVVTGIEAAMLDLLGQHLGVNVASLLGDGQQRSEVEMLGYLFFVGNRKATPLPYQSQPDEQCDWYRLRHEEAMTPETVVRLAEAAYEKYGFNDFKLKGGVLAGEEEAESIVALAKRFPQARVTLDPNGAWSLNEAISIGKYLKGSLAYAEDPCGAEQGFSGREVMAEFRRATGLPTATNMIATDWRQMGHTLSLQSVDIPLADPHFWTMQGSVRVAQMCHEFGLTWGSHSNNHFDISLAMFTHVAAAAPGKITAIDTHWIWQEGNQRLTKEPFEIKGGMVQVPTKPGLGVELDMDQVMKAHELYQKHGLGARDDAMGMQYLIPGWTFDNKRPCMVR

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Crispr_ID: NZ_CP019410_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP019410_3

3622943-3623024

Orphan

Consensus_repeat	Method
GTAGGCCCGATAAGCGCAGCGCCATC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP019410_3

>merge|NZ_CP019410|3|3622943-3623024|CRISPRCasFinder
GTAGGCCCGATAAGCGCAGCGCCATCAGACATTACCACCAGGCTGATATCAATGCGGTAGGCCCGATAAGCGCAGCGCCATC

>NZ_CP019410|3|3|3622943-3623024|CRISPRCasFinder
GTAGGCCCGATAAGCGCAGCGCCATC	AGACATTACCACCAGGCTGATATCAATGCG
GTAGGCCCGATAAGCGCAGCGCCATC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019410.1\|WP_050067978.1\|3618123_3618984_+\|L-ribulose-5-phosphate-3-epimerase	unknown	unknown	gnl\|CDD\|237308
NZ_CP019410.1\|WP_076727383.1\|3619833_3620649_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|227095
NZ_CP019410.1\|WP_001188275.1\|3624748_3625630_+\|ROK-family-protein	unknown	unknown	gnl\|CDD\|224851
NZ_CP019410.1\|WP_000089539.1\|3617468_3618131_+\|3-keto-L-gulonate-6-phosphate-decarboxylase-UlaD	unknown	unknown	gnl\|CDD\|183962
NZ_CP019410.1\|WP_000200188.1\|3628885_3630277_-\|L-seryl-tRNA(Sec)-selenium-transferase	unknown	unknown	gnl\|CDD\|235278
NZ_CP019410.1\|WP_000893174.1\|3618977_3619673_+\|L-ribulose-5-phosphate-4-epimerase	unknown	unknown	gnl\|CDD\|183459
NZ_CP019410.1\|WP_076727381.1\|3615975_3617472_+\|carbohydrate-kinase	unknown	unknown	gnl\|CDD\|212666
NZ_CP019410.1\|WP_001101516.1\|3620912_3622868_+\|glycoside-hydrolase-family-127-protein	unknown	unknown	gnl\|CDD\|226063
NZ_CP019410.1\|WP_076727390.1\|3635263_3636412_+\|mannitol-1-phosphate-5-dehydrogenase	unknown	unknown	gnl\|CDD\|235031
NZ_CP019410.1\|WP_000766337.1\|3614985_3615972_+\|TRAP-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270397
NZ_CP019410.1\|WP_061377055.1\|3625701_3626853_-\|L-threonine-dehydrogenase	unknown	unknown	gnl\|CDD\|182118
NZ_CP019410.1\|WP_076727386.1\|3632220_3632583_-\|DUF3302-domain-containing-protein	unknown	unknown	gnl\|CDD\|314583
NZ_CP019410.1\|WP_076727384.1\|3627038_3628889_-\|selenocysteine-specific-translation-elongation-factor	unknown	unknown	gnl\|CDD\|182508
NZ_CP019410.1\|WP_000301822.1\|3613696_3614974_+\|2,3-diketo-L-gulonate-transporter-large-permease-YiaN	unknown	unknown	gnl\|CDD\|185020
NZ_CP019410.1\|WP_000364909.1\|3631081_3632218_-\|HlyD-family-secretion-protein	unknown	unknown	gnl\|CDD\|224482
NZ_CP019410.1\|WP_076727379.1\|3613220_3613694_+\|2,3-diketo-L-gulonate-TRAP-transporter-small-permease-YiaM	unknown	unknown	gnl\|CDD\|182129
NZ_CP019410.1\|WP_000766677.1\|3630375_3630984_-\|glutathione-S-transferase	unknown	unknown	gnl\|CDD\|182405
NZ_CP019410.1\|WP_000183988.1\|3623041_3624580_-\|aldehyde-dehydrogenase-AldB	unknown	unknown	gnl\|CDD\|143434
NZ_CP019410.1\|WP_000093287.1\|3633116_3635033_+\|PTS-mannitol-transporter-subunit-IICBA	unknown	unknown	gnl\|CDD\|237905
NZ_CP019410.1\|WP_047606889.1\|3612149_3613082_+\|DUF4862-family-protein	unknown	unknown	gnl\|CDD\|374399

Protein	Function_ID	Function_description	E-value
NZ_CP019410.1\|WP_050067978.1\|3618123_3618984_+\|L-ribulose-5-phosphate-3-epimerase	gnl\|CDD\|237308	PRK13210, PRK13210, L-ribulose-5-phosphate 3-epimerase.	0
NZ_CP019410.1\|WP_076727383.1\|3619833_3620649_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|227095	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms].	9.69607e-22
NZ_CP019410.1\|WP_001188275.1\|3624748_3625630_+\|ROK-family-protein	gnl\|CDD\|224851	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism].	1.74357e-77
NZ_CP019410.1\|WP_000089539.1\|3617468_3618131_+\|3-keto-L-gulonate-6-phosphate-decarboxylase-UlaD	gnl\|CDD\|183962	PRK13305, sgbH, 3-keto-L-gulonate-6-phosphate decarboxylase UlaD.	1.19189e-146
NZ_CP019410.1\|WP_000200188.1\|3628885_3630277_-\|L-seryl-tRNA(Sec)-selenium-transferase	gnl\|CDD\|235278	PRK04311, PRK04311, selenocysteine synthase; Provisional.	0
NZ_CP019410.1\|WP_000893174.1\|3618977_3619673_+\|L-ribulose-5-phosphate-4-epimerase	gnl\|CDD\|183459	PRK12347, sgbE, L-ribulose-5-phosphate 4-epimerase; Reviewed.	2.18935e-178
NZ_CP019410.1\|WP_076727381.1\|3615975_3617472_+\|carbohydrate-kinase	gnl\|CDD\|212666	cd07802, FGGY_L-XK, L-xylulose kinases; a subfamily of the FGGY family of carbohydrate kinases. This subfamily is composed of bacterial L-xylulose kinases (L-XK, also known as L-xylulokinase; EC 2.7.1.53), which catalyze the ATP-dependent phosphorylation of L-xylulose to produce L-xylulose 5-phosphate and ADP. The presence of Mg2+ might be required for catalytic activity. Some uncharacterized sequences are also included in this subfamily. L-XKs belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain.	0
NZ_CP019410.1\|WP_001101516.1\|3620912_3622868_+\|glycoside-hydrolase-family-127-protein	gnl\|CDD\|226063	COG3533, COG3533, Uncharacterized protein conserved in bacteria [Function unknown].	0
NZ_CP019410.1\|WP_076727390.1\|3635263_3636412_+\|mannitol-1-phosphate-5-dehydrogenase	gnl\|CDD\|235031	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional.	0
NZ_CP019410.1\|WP_000766337.1\|3614985_3615972_+\|TRAP-transporter-substrate-binding-protein	gnl\|CDD\|270397	cd13679, PBP2_TRAP_YiaO_like, Substrate-binding domain of 2,3-diketo-L-gulonate-binding Tripartite ATP-independent Periplasmic transport system and related proteins; the type 2 periplasmic-binding protein fold. This subfamily includes the solute receptor protein YiaO of TRAP transport system. TRAP transporters are a large family of solute transporters ubiquitously found in bacteria and archaea. They are comprised of a periplasmic substrate-binding protein (SBP) and two unequally sized integral membrane components: a large transmembrane subunit involved in the translocation process and a smaller membrane of unknown function. The driving force of TRAP transporters is provided by electrochemical ion gradients (either protons or sodium ions) across the cytoplasmic membrane, rather than ATP hydrolysis. This substrate-binding domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	1.08134e-150
NZ_CP019410.1\|WP_061377055.1\|3625701_3626853_-\|L-threonine-dehydrogenase	gnl\|CDD\|182118	PRK09860, PRK09860, putative alcohol dehydrogenase; Provisional.	0
NZ_CP019410.1\|WP_076727386.1\|3632220_3632583_-\|DUF3302-domain-containing-protein	gnl\|CDD\|314583	pfam11742, DUF3302, Protein of unknown function (DUF3302). This family of unknown function is expressed by proteobacteria.	2.85329e-43
NZ_CP019410.1\|WP_076727384.1\|3627038_3628889_-\|selenocysteine-specific-translation-elongation-factor	gnl\|CDD\|182508	PRK10512, PRK10512, selenocysteinyl-tRNA-specific translation factor; Provisional.	0
NZ_CP019410.1\|WP_000301822.1\|3613696_3614974_+\|2,3-diketo-L-gulonate-transporter-large-permease-YiaN	gnl\|CDD\|185020	PRK15060, PRK15060, 2,3-diketo-L-gulonate transporter large permease YiaN.	0
NZ_CP019410.1\|WP_000364909.1\|3631081_3632218_-\|HlyD-family-secretion-protein	gnl\|CDD\|224482	COG1566, EmrA, Multidrug resistance efflux pump [Defense mechanisms].	4.43013e-92
NZ_CP019410.1\|WP_076727379.1\|3613220_3613694_+\|2,3-diketo-L-gulonate-TRAP-transporter-small-permease-YiaM	gnl\|CDD\|182129	PRK09877, PRK09877, 2,3-diketo-L-gulonate TRAP transporter small permease protein YiaM; Provisional.	3.64581e-98
NZ_CP019410.1\|WP_000766677.1\|3630375_3630984_-\|glutathione-S-transferase	gnl\|CDD\|182405	PRK10357, PRK10357, putative glutathione S-transferase; Provisional.	3.5794e-154
NZ_CP019410.1\|WP_000183988.1\|3623041_3624580_-\|aldehyde-dehydrogenase-AldB	gnl\|CDD\|143434	cd07116, ALDH_ACDHII-AcoD, Ralstonia eutrophus NAD+-dependent acetaldehyde dehydrogenase II-like. Included in this CD is the NAD+-dependent, acetaldehyde dehydrogenase II (AcDHII, AcoD, EC=1.2.1.3) from Ralstonia (Alcaligenes) eutrophus H16 involved in the catabolism of acetoin and ethanol, and similar proteins, such as, the dimeric dihydrolipoamide dehydrogenase of the acetoin dehydrogenase enzyme system of Klebsiella pneumonia. Also included are sequences similar to the NAD+-dependent chloroacetaldehyde dehydrogenases (AldA and AldB) of Xanthobacter autotrophicus GJ10 which are involved in the degradation of 1,2-dichloroethane. These proteins apparently require RpoN factors for expression.	0
NZ_CP019410.1\|WP_000093287.1\|3633116_3635033_+\|PTS-mannitol-transporter-subunit-IICBA	gnl\|CDD\|237905	PRK15083, PRK15083, PTS system mannitol-specific transporter subunit IICBA; Provisional.	0
NZ_CP019410.1\|WP_047606889.1\|3612149_3613082_+\|DUF4862-family-protein	gnl\|CDD\|374399	pfam16154, DUF4862, Domain of unknown function (DUF4862). This family consists of uncharacterized proteins around 300 residues in length and is mainly found in various high GC Gram+ bacteria, but also in several pathogenic and non-pathogenic enterobacteria (Salmonella, E. coli). Distant homology analysis suggests this could be a branch of Xylose isomerase-like TIM barrel family, but this prediction is currently not confirmed by experiment.	3.91704e-116

>NZ_CP019410.1|WP_001101516.1|3620912_3622868_+|glycoside-hydrolase-family-127-protein
MNVLEVDLHKLTVSDPFLGQYQQLVRDVVIPYQWDALNDRIPEAEPSHAIENFRIAAGQQTGDFYGMVFQDSDVAKWLEAVAWSLCQKPDPALEKTADEVIELVAAAQCDDGYLNTYFTAKAPQERWSNLAECHELYCAGHLIEAGVAFFQATGKRRLLDVVCRLADHIDSTFGPGENQLHGYPGHPEIELALMRLYEVTEQPRYMTLASYFIGQRGTQPHFYDEEYEKRGQTSYWHTYGPAWMVKDKAYSQAHLPISQQQTAIGHAVRFVYLMTGVAHLARLSNDEGKRQDCLRLWKNMAQRQLYITGGIGSQSSGEAFSSDYDLPNDSVYAESCASIGLMMFARRMLEMEADSQYADVMERALYNTVLGGMALDGKHFFYVNPLEVHPKSLKFNHIYDHVKPIRQRWFGCACCPPNIARVLTSLGHYIYTPRADALYINMYVGNSMEIPVENGALKLRISGNYPWHEQVKIAIDSVQPVRHTLALRLPDWCPEAKVTLNGLEVEQDIRKGYLHIRRTWQEGDTITLTLPMPVRRVYGNPLARHVAGKVAIQRGPLVYCLEQADNGEELHNLWLPKESEFRVFEGKGLFAHKMLIQAEGEKQSAPDAQHQALWHYDNAPSSRQPQTLTFIPWFSWANRGEGEMRIWVNER
>NZ_CP019410.1|WP_076727383.1|3619833_3620649_-|helix-turn-helix-domain-containing-protein
MLELSMTLPIKVQNGGLFISRGIGRHPARRLQSWEIIFVEKGCLKIQEEECVFCVDAGESLLLWPHRRHIGVEEFPADLKFYWLHFEVKAPDSDPRWLTHLSVPQHTQVADPQALIALFRQFMNEQEKHQRSPALEFIVLLILQQLTVDARQNENAEVAGVSLAWKVQQLIRTHYHLPLSSSVLAKELHCNVDYLGRVYRRVFHLTLTEAIHRQRVREAEKLLISDARSLKEVAERCGFNDVGYFRQIFRKHTGLTPTAWKRRYSKEHVNS
>NZ_CP019410.1|WP_000893174.1|3618977_3619673_+|L-ribulose-5-phosphate-4-epimerase
MLEQLKAEVLAANLALPAHGLVTFTWGNVSAVDETRKLMVIKPSGVEYEVMTADDMVVVEIASGKVVEGNKKPSSDTATHLALYRRYPQIGGIVHTHSRHATIWSQAGLDLPAWGTTHADYFYGAIPCTRLMTVEEINGEYEYQTGEVIIKTFEERGLDPAQIPAVLVHSHGPFAWGKNAADAVHNAVVLEECAYMGLFSRQLAPQLPDMQPELLDKHYLRKHGANAYYGQ
>NZ_CP019410.1|WP_050067978.1|3618123_3618984_+|L-ribulose-5-phosphate-3-epimerase
MRNHPLGIYEKALAKDLSWPERLVLAKSCGFDFVEMSVDETDERLSRLEWTSAQRASLVSAMLESGVAIPSMCLSAHRRFPFGSRDEAVRERAREIMTKAIRLARDLGIRTIQLAGYDVYYEEHDEGTRQRFAEGLAWAVEQAAAAQVMLAVEIMDTAFMNSISKWKKWDEMLSSPWFTVYPDVGNLSAWGNDVTAELKLGIDRIAAIHLKDTLPVTGDSPGQFRDVPFGEGCVDFVGIFKTLHELNYRGSFLIEMWTEKASEPVLEIIQARRWIESRMQEGGFTC
>NZ_CP019410.1|WP_000089539.1|3617468_3618131_+|3-keto-L-gulonate-6-phosphate-decarboxylase-UlaD
MSRPLLQLALDHTSLEAAQRDVALLQDHVDIVEAGTILCLTEGLSAVKALRAQCPEKIIVADWKVADAGETLAQQAFSAGANWMTIICAAPLATVEKGHAVAQSCGGEIQMELFGNWTLDDARDWYRVGVRQAIYHRGRDAQASGQQWGEADLARMKALSDIGLELSITGGITPADLPLFRDINVKAFIAGRALAGAAHPAQVAAEFHAQIDAIWGEKHA
>NZ_CP019410.1|WP_076727381.1|3615975_3617472_+|carbohydrate-kinase
MSNYWLGLDCGGSWLKAGLYDGAGREVAVQRLPLHALSPQPGWVERDMTELWQQCGSVINKLLTHTGVSGSQIRGLGISAQGKGLFLLDKIDRPLGKAILSSDRRAMEIVQRWQKEAVPQKLYPLTRQTLWTGHPVSLLRWVKENEPQRYAQIGCVMMTHDYLRWCLTGVKGCEESNISESNLYNMATGQYDLRLTEWLGISEIDSALPPVVGSAEICGEITAQAAAITGLAAGTPVVGGLFDVVSTALCAGIEDESTLNAVMGTWAVTSGIAHGLRDHEAHPYVYGRYVNDGQYIVHEASPTSSGNLEWFTAQWGYLSFDEINQAVASLPKAGSDLFFLPFLYGSNAGLEMTCGFYGMQALHTRAHLLQAIYEGVVFSHMTHLNRMRERFTDVCALRVTGGPAHSDVWMQMLADVSGLRIELPQVEETGCFGAALAARVGTGVYRDFREAQRDLQHPVRTLLPDMTAHALYQRKYRQYQDLITALQGYHARIKEHAL
>NZ_CP019410.1|WP_000766337.1|3614985_3615972_+|TRAP-transporter-substrate-binding-protein
MKLHVIARSLLIAGLTVFSVSSLAAQSLRFGYETPQTDSQHIAAKKFNELLKEKTNGELTLKLFPDSTLGNAQAMISGVRGGTIDMEMSGSNNFTGLAPVFNLLDVPFLFRDTAHAHKTLDGKVGDELKKSLDSKGLKVLAYWENGWRDVTNSRAPVKTPGDLKGLKIRTNNSPMNIAAFKIFGANPIPMPFSEVYTGLETRTIDAQEHPINVVWSAKFYEVQKYLSLTHHAYSPLLLVINKAKFDALSPQFQEALLSSAKEAGDYQRKLVAEDQQKIIDGMKEAGVEVLTDIDRKAFSDALGSQVRDMFLKDNPQGADLLKAVDEVQ
>NZ_CP019410.1|WP_000301822.1|3613696_3614974_+|2,3-diketo-L-gulonate-transporter-large-permease-YiaN
MAVVIFLCCLLGGIAIGLPIAWSLLLCGAALMAYLDMFDVQIMAQTLVNGADSFSLLAIPFFVLAGEIMNAGGLSKRIVDLPMKLVGHKPGGLGYVGVIAAMIMASLSGSAVADTAAVAALLVPMMRSANYPINRSVGLIASGGIIAPIIPPSIPFIIFGVSSGLSISKLFMAGIAPGIMMGAALMLTWWWQAGRLNLPSQPKATPREIWQSLVSGIWALFLPVIIIGGFRSGLFTPTEAGAVAAFYALFVAVVIYRELTFSSLYHVLVNAAKTTSVVMFLVAAAQVSAWLITIAELPMMVSDLLQPLVDSPRLLFIVIMISIMVVGMVMDLTPTVLILTPVLLPLVKEANIDPIYFGVMFIINCSIGLITPPVGNVLNVISGVAKLKFDDAVRGVFPYVVVLMSLLVLFIFIPELIITPLKWIN
>NZ_CP019410.1|WP_076727379.1|3613220_3613694_+|2,3-diketo-L-gulonate-TRAP-transporter-small-permease-YiaM
MKRVLEGILAVLIAVLSCIVFINVILRYGFESSILSVDELSRYLFVWLTFIGAIVAFMDNAHVQVTFVVEKLSPANQRRLSLLTHSLILLLCLALGWGSLQKALQDWSDHSPILGLPIGLMYIACLPTSAAIALIELRRLYHLITRNDSFQQPQQGA
>NZ_CP019410.1|WP_047606889.1|3612149_3613082_+|DUF4862-family-protein
MKNNTGYIIGAYPCAPSFHQKSEEEETEFWRQLSDTPDIRGLEQPCLEHLHPLGDEWLLRHTPGNWQIVVTAIMETMRRRSENGGFGLASSDEEQRKACVEYYRHLHQKINKINGNNTGKVIALELHAAPLAGNPNVAQATDAFARSLKEIANWDWSCDLVLEHCDAMTGPAPRKGFLPLVNVLETIADYDISVCINWARSAIEGRDTSLPLIHTQQAKQAGKLGALMFSGTTLDGEYGEWQDLHAPFAPFCPQSLMTEKHVQELITAAAPELLQFTGIKLLEINASADINHRINILRDGINMMKKATRR
>NZ_CP019410.1|WP_000183988.1|3623041_3624580_-|aldehyde-dehydrogenase-AldB
MTNNPPSTRIQPGEYGYPLKLKARYDNFIGGDWVAPADGEYYQNLTPVTGQPLCEVASSGKKDIDLALDAAHKAKDKWAHTSVQDRAAILFKIADRMEQNLELLATAETWDNGKPIRETSAADVPLAIDHFRYFASCIRAQEGGISEVDSETVAYHFHEPLGVVGQIIPWNFPLLMASWKMAPALAAGNCVVLKPARLTPLSVLLLMEVIGDLLPPGVVNVVNGAGGEIGEYLATSKRIAKVAFTGSTEVGQQIMQYATQNIIPVTLELGGKSPNIFFADVMDEEDAFFDKALEGFALFAFNQGEVCTCPSRALVQESIYERFMERAIRRVESIRSGNPLDSGTQMGAQVSHGQLETILNYIDIGKKEGADILTGGRRKELDGELKEGYYLEPTILFGKNNMRVFQEEIFGPVLAVTTFKTMEEALEIANDTQYGLGAGVWSRNGNLAYKMGRGIQAGRVWTNCYHAYPAHAAFGGYKQSGIGRETHKMMLEHYQQTKCLLVSYSDKPLGLF
>NZ_CP019410.1|WP_001188275.1|3624748_3625630_+|ROK-family-protein
MQQYIGIDVGGTHVKYGVINSDGEELTHHQFDTPEDASTFTRKWQDVVARCQQDYDIAAIGVSFPGHINPHNGHAAKAGALAYLDDVNLMELFSGLTDLPLVVENDANCAALGEMWRGAGQHYENMVCITIGTGIGGGIIVGRELYRGAHFHAGEFGVMPVGNNGESMHKIASTSGLMASCRQALALPAEEMPPADVIFERMATDVHLREAVNDWARYLSRGVYSVISMFDPGVVLIGGGISEQEKLYPLLTRHLETFEMWEALQVPIQPCQLGNQAGRLGAVWLAQQKLDRS
>NZ_CP019410.1|WP_061377055.1|3625701_3626853_-|L-threonine-dehydrogenase
MAASTFFIPSVNVIGADSLKNAMNTMAEYGFRRTLIVTDAMLTKLGMAGDIQKALQERDIFSVIYDGTQPNPTTSNVAAGLKLLKENGCDSVISLGGGSPHDCAKGIALVAANGGDIRDYEGVDRSAKPQLPMIAINTTAGTASEMTRFCIITDEERHIKMAIVDKHVTPLLSVNDSSLMVGMPKSLTAATGMDALTHAIEAYVSVAATPITDACALKAVTMIAENLVVAVEEGSNVQAREAMAYAQFLAGMAFNNASLGYVHAMAHQLGGFYNLPHGVCNAVLLPHVQVFNSQVAAARLRDCAAAMGVDVSGMSEAEGAQACVAAIRQLSQKVNIPAGLRELNVKEEDIPVLATNALKDACGLTNPIQATHDEIVEIYRAAM
>NZ_CP019410.1|WP_076727384.1|3627038_3628889_-|selenocysteine-specific-translation-elongation-factor
MIIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHALLVVACDDGVMAQTREHLQILQLTGNLQLTVALTKADRVDEVRIGEVREEVLAALDNYGFADTVVFVTAANEGRGIAELRAHLQQLPARLHAAQHRFRLAIDRAFTVKGAGLVVTGTALSGEVNVGDTLWLTGVNTPMRVRSLHAQNQPTDHAYAGQRIALNIAGDAEKEQLNRGDWLLSDAPVGEAFSRVIVSLALHAPLSQWQPLHIHHAASHVTGRVSLLEGGLAELIFDTPLWLADNDRLVLRDISARATLAGARVVTLKAPRRGKRKPDYLHWLSTLADAQDDSAALAIHLERGAVNLPDFGWARQLNPLGMRQLIEQHGFIQAGDNLLSAPVAARWQRKILDTLATYHEQHRDEPGPGRERLRRMALPMEDEALVLMLIERMRDDGLIHSHHGWLHLPDHKAGFSDEQQAVWHKVEPLFGDEPWWVRDLAKETGTEEQLMRLVLRQAAQQGIITAIVKDRYYRNDRIVAFANMIRELDQERGSTCAADFRDRLNVGRKLAIQILEYFDRIGFTRRRGNDHLLRDALLFPQKE
>NZ_CP019410.1|WP_000200188.1|3628885_3630277_-|L-seryl-tRNA(Sec)-selenium-transferase
MTSETRTLYSQLPAIDRLLHDSAFLSLRDRYGHTQVVDLLRRMLDDARDVIRNTQTLPDWYADWAQEAKLRLENAAQSALRPVINLTGTVLHTNLGRALQAQEAIEAVTQAMRAPVTLEYDLDGAGRGHRDRALATLLCRITGAEDACIVNNNAAAVLLMLAATASGKEVVVSRGELVEIGGAFRIPDVMRQAGCTLHEVGTTNRTHAKDYRQAVNENTGLLMKVHTSNYSIEGFTKTVEEAELAEIGRELDIPVVADLGSGSLVDLSQYGLPKEPMPQQLIAAGVSLVSFSGDKLLGGPQAGIIVGKKAMIAQLQSHPLKRALRADKMTLAALEATLRLYLHPEALAEKLPTLRLLTRSEASIREQAQRLQARLAARYGDEFALEVKPCLSQIGSGSLPVDRLPSAAMTFTPHDGRGSRLEALAARWRTLPVPVIGRIYDGRLWLDMRCLEDESRFMEMMLK
>NZ_CP019410.1|WP_000766677.1|3630375_3630984_-|glutathione-S-transferase
MKLIGSYTSPFVRKISILLLEKGITFEFVNELPYNADSGVARYNPLGKVPALVTDAGEYWFDSPIIAEYIELLDIAPAMLPRDPMAALKVRQLEALADGIMDAALVSVREQARPAAQQSETELLRQREKINRSLDMLESYLSDGTLKTDTVNLATIAIACAVGYLNFRRVAPGWCVSRPHLVKLVETLFQRESFARTEAPKA
>NZ_CP019410.1|WP_000364909.1|3631081_3632218_-|HlyD-family-secretion-protein
MDLLIVLTYVAFAWAIFKIFRIPVNQWTLATAALGGVFIVAGLILLMNYNHPYTFTAQKAVISIPVTPQVTGIVSEVTDKNNQLIKKGDVLFKLDPVRYQARVDRLQADLVTATHNIDNLKAQLSEAVANTTRVSAERDRLYKDYQRYLKGSQAKVNPFSESDIDNARQNYLAQDALVKGSVAEQTQIQSQLDSMVNGEQSQVASLRAQLAEAKYNLEQTVVRAPSNGYATQILIRPGTYAAALPLRPVMVFIPEQKRQIVAQFRQNSLLRLKPGDEAEVVFNALPGQIFTGKLTSILPVVPGGSYQAQGALQSLTVVPGTDGVLATIELDPNADVDALPDGIYAQVAVYSDHFAHVSVMRKVLLRMTSWMHYLYLDH
>NZ_CP019410.1|WP_076727386.1|3632220_3632583_-|DUF3302-domain-containing-protein
MFLNYFALGVLIFVFLVLFYGIIAIHDIPYNMAKKRNHPHADAIHTAGWVSLFTLHVIWPFLWIWATLYQPEKGWGMQSHTTPTGKESDPEIAALAARITQLEKRLDGEKKNDNSTFPEI
>NZ_CP019410.1|WP_000093287.1|3633116_3635033_+|PTS-mannitol-transporter-subunit-IICBA
MSSDIKIKVQSFGRFLSNMVMPNIGAFIAWGIITALFIPTGWLPNETLAKLVGPMITYLLPLLIGYTGGRLVGGERGGVVGAITTMGVIVGADMPMFLGSMIAGPLGGYCIKKFDSWVDGKIKSGFEMLVNNFSAGIIGMILAILAFLGIGPAVEVLSKILAAGVNFMVAHDMLPLASIFVEPAKILFLNNAINHGIFSPLGIQQSHEMGKSIFFLIEANPGPGMGVLLAYMFFGRGSAKQSAGGAAIIHFLGGIHEIYFPYVLMNPRLILAVILGGMTGVFTLTILNGGLVSPASPGSILAVLAMTPKGAYFANIAAIVAAMAVSFVVSAILLKTSKVKEEDDIEAATRRMHDMKAESKGASPLAAGDVTNDLSHVRKIIVACDAGMGSSAMGAGVLRKKVQDAGLSQISVTNSAINNLPPDVDLVITHRDLTERAMRQVPQAQHISLTNFLDSGLYTSLTERLVAAQRHNTNEEKVRDHLKDSFEEGDNNLFKLGAENIFLGRKAANKEEAIRFAGEQLVKGGYVEPEYVEAMLDREKLTPTYLGESIAVPHGTVEAKDRVLKTGVVFCQYPEGVRFGEEEDDIARLVIGIAARNNEHIQVITSLTNALDDESVIERLAHTTSVDEVLELLAGKKA
>NZ_CP019410.1|WP_076727390.1|3635263_3636412_+|mannitol-1-phosphate-5-dehydrogenase
MKALHFGAGNIGRGFIGKLLADAGIQLTFADVNQVVLDALNARHSYQVHVVGENEQVDTVSGVNAVSSIGDDVVDLIAHVDLITTAVGPVVLERIAPAIAKGLVKRKAQGVDAPLNIIACENMVRGTTQLKGHVMNALADGDKAWVEQHVGFVDSAVDRIVPPSASATNDPLEVTVETFSEWIVDKTQFKGALPTIPGMELTDNLMAFVERKLFTLNTGHAITAYLGKLAGHQTIRDAILDESIRAVVKGAMEESGAVLIKRYGFDADKHAAYIQKILGRFENPYLKDDVERVGRQPLRKLSAGDRLIKPLLGTLEYGLPHVNLVKGIAAAMHFRSEEDPQAQELAALIDEKGPQAALAQISGLDANSDVVAEAVNAYNATK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP019410_1	1.5\|2850985\|32\|NZ_CP019410\|CRISPRCasFinder,CRT,PILER-CR	2850985-2851016	32	NZ_KX960110	Escherichia coli strain CREC-TJ2 plasmid pCREC-TJ2-NDM, complete sequence	43761-43792	0	1.0
NZ_CP019410_1	1.5\|2850985\|32\|NZ_CP019410\|CRISPRCasFinder,CRT,PILER-CR	2850985-2851016	32	NZ_KU295131	Escherichia coli strain BK28009 plasmid pBK28009, complete sequence	54028-54059	0	1.0
NZ_CP019410_1	1.5\|2850985\|32\|NZ_CP019410\|CRISPRCasFinder,CRT,PILER-CR	2850985-2851016	32	NZ_CP026237	Citrobacter freundii complex sp. CFNIH3 plasmid pCFR-9161, complete sequence	201401-201432	0	1.0
NZ_CP019410_1	1.5\|2850985\|32\|NZ_CP019410\|CRISPRCasFinder,CRT,PILER-CR	2850985-2851016	32	NZ_CP025944	Escherichia coli strain SCEC020023 plasmid pOXA10_020023, complete sequence	85940-85971	0	1.0
NZ_CP019410_1	1.5\|2850985\|32\|NZ_CP019410\|CRISPRCasFinder,CRT,PILER-CR	2850985-2851016	32	NZ_CP038456	Escherichia coli strain EC-129 plasmid pEC129_3	8090-8121	0	1.0
NZ_CP019410_1	1.5\|2850985\|32\|NZ_CP019410\|CRISPRCasFinder,CRT,PILER-CR	2850985-2851016	32	MH430882	Salmonella enterica subsp. enterica serovar London strain 3-5 plasmid pSa44-CIP, complete sequence	30660-30691	0	1.0
NZ_CP019410_1	1.5\|2850985\|32\|NZ_CP019410\|CRISPRCasFinder,CRT,PILER-CR	2850985-2851016	32	MH430881	Salmonella enterica subsp. enterica serovar London strain 3-5 plasmid pSa44-CIP-CRO, complete sequence	98928-98959	0	1.0
NZ_CP019410_1	1.5\|2850985\|32\|NZ_CP019410\|CRISPRCasFinder,CRT,PILER-CR	2850985-2851016	32	NZ_CP021734	Escherichia coli strain AR_0114 plasmid unitig_2, complete sequence	11997-12028	0	1.0
NZ_CP019410_1	1.5\|2850985\|32\|NZ_CP019410\|CRISPRCasFinder,CRT,PILER-CR	2850985-2851016	32	MN604267	Salmonella enterica subsp. enterica serovar London strain SAL-19-0623 plasmid pSAL-19-0623_NDM, complete sequence	161066-161097	0	1.0
NZ_CP019410_1	1.5\|2850985\|32\|NZ_CP019410\|CRISPRCasFinder,CRT,PILER-CR	2850985-2851016	32	NZ_MG870194	Salmonella enterica subsp. enterica serovar London strain Sa128 plasmid pSa128, complete sequence	102550-102581	0	1.0
NZ_CP019410_1	1.5\|2850985\|32\|NZ_CP019410\|CRISPRCasFinder,CRT,PILER-CR	2850985-2851016	32	MG874043	Salmonella sp. strain Sa63 plasmid pSa63-CIP, complete sequence	59654-59685	0	1.0
NZ_CP019410_1	1.5\|2850985\|32\|NZ_CP019410\|CRISPRCasFinder,CRT,PILER-CR	2850985-2851016	32	MG874044	Salmonella sp. strain Sa76 plasmid pSa76-CIP, complete sequence	95707-95738	0	1.0
NZ_CP019410_1	1.19\|2851839\|32\|NZ_CP019410\|CRISPRCasFinder,CRT,PILER-CR	2851839-2851870	32	NZ_KY515226	Salmonella enterica subsp. enterica serovar Derby strain S701 plasmid AnCo3, complete sequence	73625-73656	0	1.0
NZ_CP019410_1	1.19\|2851839\|32\|NZ_CP019410\|CRISPRCasFinder,CRT,PILER-CR	2851839-2851870	32	NZ_KP763470	Salmonella enterica subsp. enterica serovar Typhimurium strain L946 plasmid pSTM_Phi, complete sequence	33909-33940	0	1.0
NZ_CP019410_1	1.24\|2852144\|32\|NZ_CP019410\|CRISPRCasFinder,CRT	2852144-2852175	32	NZ_CP029997	Salmonella enterica subsp. salamae strain SA20053897 plasmid pSA20053897.2, complete sequence	60054-60085	1	0.969
NZ_CP019410_1	1.24\|2852144\|32\|NZ_CP019410\|CRISPRCasFinder,CRT	2852144-2852175	32	CP053334	Salmonella enterica subsp. diarizonae serovar 47:k:z35 strain 2009K1094 plasmid unnamed2, complete sequence	30297-30328	2	0.938
NZ_CP019410_1	1.19\|2851839\|32\|NZ_CP019410\|CRISPRCasFinder,CRT,PILER-CR	2851839-2851870	32	NZ_CP010244	Escherichia coli strain S56 plasmid B, complete sequence	104997-105028	4	0.875
NZ_CP019410_1	1.2\|2850802\|32\|NZ_CP019410\|CRISPRCasFinder,CRT,PILER-CR	2850802-2850833	32	NZ_CP022304	Thalassococcus sp. S3 plasmid pS3A, complete sequence	1984-2015	5	0.844
NZ_CP019410_1	1.19\|2851839\|32\|NZ_CP019410\|CRISPRCasFinder,CRT,PILER-CR	2851839-2851870	32	NZ_CP044180	Salmonella enterica subsp. enterica serovar Concord strain AR-0407 plasmid pAR-0407-3, complete sequence	12543-12574	5	0.844
NZ_CP019410_1	1.19\|2851839\|32\|NZ_CP019410\|CRISPRCasFinder,CRT,PILER-CR	2851839-2851870	32	NZ_CP030187	Salmonella enterica strain SA20094620 plasmid pSA20094620.2, complete sequence	72216-72247	5	0.844
NZ_CP019410_1	1.19\|2851839\|32\|NZ_CP019410\|CRISPRCasFinder,CRT,PILER-CR	2851839-2851870	32	NZ_CP027108	Cronobacter sakazakii strain CS-931 plasmid pCsaCS931a, complete sequence	11132-11163	5	0.844
NZ_CP019410_1	1.2\|2850802\|32\|NZ_CP019410\|CRISPRCasFinder,CRT,PILER-CR	2850802-2850833	32	NZ_CP023072	Sinorhizobium fredii CCBAU 83666 plasmid pSF83666a, complete sequence	328890-328921	6	0.812
NZ_CP019410_1	1.4\|2850924\|32\|NZ_CP019410\|CRISPRCasFinder,CRT,PILER-CR	2850924-2850955	32	NZ_KY296095	Pseudomonas aeruginosa strain 14057 plasmid p14057-KPC, complete sequence	32689-32720	6	0.812
NZ_CP019410_1	1.4\|2850924\|32\|NZ_CP019410\|CRISPRCasFinder,CRT,PILER-CR	2850924-2850955	32	NZ_CP024631	Pseudomonas aeruginosa strain PA59 plasmid unnamed1, complete sequence	7133-7164	6	0.812
NZ_CP019410_1	1.4\|2850924\|32\|NZ_CP019410\|CRISPRCasFinder,CRT,PILER-CR	2850924-2850955	32	NZ_MH734334	Pseudomonas aeruginosa strain 1011 plasmid p1011-KPC2, complete sequence	45685-45716	6	0.812
NZ_CP019410_1	1.10\|2851290\|32\|NZ_CP019410\|CRISPRCasFinder,CRT,PILER-CR	2851290-2851321	32	NZ_CP019603	Croceicoccus marinus strain E4A9 plasmid pCME4A9I, complete sequence	178380-178411	6	0.812
NZ_CP019410_2	2.17\|2869735\|32\|NZ_CP019410\|CRISPRCasFinder,CRT,PILER-CR	2869735-2869766	32	NZ_CP054026	Rhizobium sp. JKLM12A2 plasmid pPR12A205, complete sequence	41693-41724	6	0.812
NZ_CP019410_2	2.17\|2869735\|32\|NZ_CP019410\|CRISPRCasFinder,CRT,PILER-CR	2869735-2869766	32	NZ_CP054036	Rhizobium sp. JKLM13E plasmid pPR13E05, complete sequence	179990-180021	6	0.812
NZ_CP019410_1	1.4\|2850924\|32\|NZ_CP019410\|CRISPRCasFinder,CRT,PILER-CR	2850924-2850955	32	NZ_CP020561	Pseudomonas aeruginosa strain CR1 plasmid pCR1, complete sequence	30704-30735	7	0.781
NZ_CP019410_1	1.4\|2850924\|32\|NZ_CP019410\|CRISPRCasFinder,CRT,PILER-CR	2850924-2850955	32	NZ_MN433456	Pseudomonas aeruginosa strain PAB546 plasmid unnamed, complete sequence	30247-30278	7	0.781
NZ_CP019410_2	2.11\|2869369\|32\|NZ_CP019410\|CRISPRCasFinder,CRT,PILER-CR	2869369-2869400	32	NZ_CP029834	Azospirillum ramasamyi strain M2T2B2 plasmid unnamed4, complete sequence	398668-398699	7	0.781
NZ_CP019410_1	1.3\|2850863\|32\|NZ_CP019410\|CRISPRCasFinder,CRT,PILER-CR	2850863-2850894	32	MN855803	Bacteriophage sp. isolate 108, partial genome	10057-10088	8	0.75
NZ_CP019410_1	1.4\|2850924\|32\|NZ_CP019410\|CRISPRCasFinder,CRT,PILER-CR	2850924-2850955	32	NC_021709	Alteromonas mediterranea 615 plasmid unnamed, complete sequence	120479-120510	8	0.75
NZ_CP019410_1	1.13\|2851473\|32\|NZ_CP019410\|CRISPRCasFinder,CRT,PILER-CR	2851473-2851504	32	NZ_CP049914	Vibrio sp. HDW18 plasmid p_unnamed1, complete sequence	234396-234427	8	0.75
NZ_CP019410_1	1.13\|2851473\|32\|NZ_CP019410\|CRISPRCasFinder,CRT,PILER-CR	2851473-2851504	32	NC_018688	Bacillus thuringiensis MC28 plasmid pMC319, complete sequence	85616-85647	8	0.75
NZ_CP019410_2	2.8\|2869185\|32\|NZ_CP019410\|CRISPRCasFinder,CRT,PILER-CR	2869185-2869216	32	MH593832	Phage sp. isolate ctcj9, complete genome	23581-23612	8	0.75
NZ_CP019410_2	2.17\|2869735\|32\|NZ_CP019410\|CRISPRCasFinder,CRT,PILER-CR	2869735-2869766	32	NZ_CP028972	Aminobacter sp. MSH1 plasmid pUSP4, complete sequence	34920-34951	8	0.75
NZ_CP019410_2	2.19\|2869857\|32\|NZ_CP019410\|CRISPRCasFinder,CRT,PILER-CR	2869857-2869888	32	NZ_CP053689	Arthrobacter citreus strain NEB 577 plasmid unnamed1, complete sequence	116343-116374	8	0.75
NZ_CP019410_3	3.1\|3622969\|30\|NZ_CP019410\|CRISPRCasFinder	3622969-3622998	30	NZ_CP019064	Rahnella sp. ERMR1:05 plasmid unnamed2, complete sequence	25629-25658	8	0.733
NZ_CP019410_1	1.2\|2850802\|32\|NZ_CP019410\|CRISPRCasFinder,CRT,PILER-CR	2850802-2850833	32	NZ_CP049157	Caballeronia sp. SBC1 plasmid pSBC1_1, complete sequence	1929932-1929963	9	0.719
NZ_CP019410_1	1.2\|2850802\|32\|NZ_CP019410\|CRISPRCasFinder,CRT,PILER-CR	2850802-2850833	32	NZ_CP049317	Caballeronia sp. SBC2 plasmid pSBC2-1, complete sequence	1709399-1709430	9	0.719
NZ_CP019410_1	1.5\|2850985\|32\|NZ_CP019410\|CRISPRCasFinder,CRT,PILER-CR	2850985-2851016	32	LN890663	Acinetobacter phage vB_AbaS_Loki genome assembly, complete genome: monopartite	7475-7506	9	0.719
NZ_CP019410_1	1.5\|2850985\|32\|NZ_CP019410\|CRISPRCasFinder,CRT,PILER-CR	2850985-2851016	32	MT152150	Pseudomonas phage 8P, complete genome	12714-12745	9	0.719
NZ_CP019410_1	1.5\|2850985\|32\|NZ_CP019410\|CRISPRCasFinder,CRT,PILER-CR	2850985-2851016	32	NC_048047	Caulobacter phage CcrBL9, complete genome	80549-80580	9	0.719
NZ_CP019410_1	1.8\|2851168\|32\|NZ_CP019410\|CRISPRCasFinder,CRT,PILER-CR	2851168-2851199	32	NZ_CP045296	Paenibacillus cellulositrophicus strain KACC 16577 plasmid unnamed1, complete sequence	821604-821635	9	0.719
NZ_CP019410_1	1.8\|2851168\|32\|NZ_CP019410\|CRISPRCasFinder,CRT,PILER-CR	2851168-2851199	32	NC_011273	Mycobacterium phage Myrna, complete genome	12501-12532	9	0.719
NZ_CP019410_1	1.19\|2851839\|32\|NZ_CP019410\|CRISPRCasFinder,CRT,PILER-CR	2851839-2851870	32	NZ_CP023739	Methylosinus trichosporium OB3b plasmid pOB3b2, complete sequence	42782-42813	9	0.719
NZ_CP019410_2	2.6\|2869063\|32\|NZ_CP019410\|CRISPRCasFinder,CRT,PILER-CR	2869063-2869094	32	NZ_CP020911	Rhizobium etli strain NXC12 plasmid pRetNXC12e, complete sequence	285189-285220	9	0.719
NZ_CP019410_2	2.6\|2869063\|32\|NZ_CP019410\|CRISPRCasFinder,CRT,PILER-CR	2869063-2869094	32	NC_021911	Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1f, complete sequence	840804-840835	9	0.719
NZ_CP019410_2	2.15\|2869613\|32\|NZ_CP019410\|CRISPRCasFinder,CRT,PILER-CR	2869613-2869644	32	NZ_CP009417	Jeotgalibacillus malaysiensis strain malaysiensis plasmid unnamed, complete sequence	397066-397097	9	0.719
NZ_CP019410_2	2.17\|2869735\|32\|NZ_CP019410\|CRISPRCasFinder,CRT,PILER-CR	2869735-2869766	32	NC_010311	Streptomyces sp. HK1 plasmid pSHK1, complete sequence	44318-44349	9	0.719
NZ_CP019410_2	2.17\|2869735\|32\|NZ_CP019410\|CRISPRCasFinder,CRT,PILER-CR	2869735-2869766	32	NZ_CP032322	Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence	1817555-1817586	9	0.719
NZ_CP019410_2	2.17\|2869735\|32\|NZ_CP019410\|CRISPRCasFinder,CRT,PILER-CR	2869735-2869766	32	ASHF01000034	Streptomyces sp. GBA 94-10 plasmid pGBA1, complete sequence, whole genome shotgun sequence	39380-39411	9	0.719
NZ_CP019410_2	2.17\|2869735\|32\|NZ_CP019410\|CRISPRCasFinder,CRT,PILER-CR	2869735-2869766	32	NZ_CP022367	Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence	641444-641475	9	0.719
NZ_CP019410_2	2.17\|2869735\|32\|NZ_CP019410\|CRISPRCasFinder,CRT,PILER-CR	2869735-2869766	32	NZ_CP007130	Gemmatirosa kalamazoonesis strain KBS708 plasmid 2, complete sequence	389488-389519	9	0.719
NZ_CP019410_2	2.17\|2869735\|32\|NZ_CP019410\|CRISPRCasFinder,CRT,PILER-CR	2869735-2869766	32	NZ_CP007794	Azospirillum brasilense strain Az39 plasmid AbAZ39_p1, complete sequence	1231871-1231902	9	0.719
NZ_CP019410_2	2.17\|2869735\|32\|NZ_CP019410\|CRISPRCasFinder,CRT,PILER-CR	2869735-2869766	32	NZ_CP029339	Streptomyces sp. SM17 plasmid pSM17A, complete sequence	125587-125618	9	0.719
NZ_CP019410_2	2.17\|2869735\|32\|NZ_CP019410\|CRISPRCasFinder,CRT,PILER-CR	2869735-2869766	32	NZ_CP032340	Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence	191879-191910	9	0.719
NZ_CP019410_2	2.17\|2869735\|32\|NZ_CP019410\|CRISPRCasFinder,CRT,PILER-CR	2869735-2869766	32	NZ_CP026489	Streptomyces sp. 604F plasmid unnamed, complete sequence	65041-65072	9	0.719
NZ_CP019410_2	2.17\|2869735\|32\|NZ_CP019410\|CRISPRCasFinder,CRT,PILER-CR	2869735-2869766	32	NZ_CP012915	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence	194130-194161	9	0.719
NZ_CP019410_2	2.17\|2869735\|32\|NZ_CP019410\|CRISPRCasFinder,CRT,PILER-CR	2869735-2869766	32	MN204498	Streptomyces phage Saftant, complete genome	21054-21085	9	0.719
NZ_CP019410_1	1.8\|2851168\|32\|NZ_CP019410\|CRISPRCasFinder,CRT,PILER-CR	2851168-2851199	32	NC_010699	Erwinia tasmaniensis Et1/99 plasmid pET45, complete sequence	31113-31144	10	0.688
NZ_CP019410_1	1.20\|2851900\|32\|NZ_CP019410\|CRISPRCasFinder,CRT,PILER-CR	2851900-2851931	32	NZ_CP033346	Salmonella enterica subsp. enterica serovar Tennessee strain CFSAN076210 plasmid pCFSAN076210, complete sequence	106193-106224	10	0.688
NZ_CP019410_1	1.20\|2851900\|32\|NZ_CP019410\|CRISPRCasFinder,CRT,PILER-CR	2851900-2851931	32	NZ_CP014995	Salmonella enterica subsp. enterica serovar Tennessee strain CFSAN001387 plasmid, complete sequence	86980-87011	10	0.688
NZ_CP019410_2	2.15\|2869613\|32\|NZ_CP019410\|CRISPRCasFinder,CRT,PILER-CR	2869613-2869644	32	KU686197	Synechococcus phage S-CAM3 isolate 0808SB25, complete genome	162087-162118	10	0.688
NZ_CP019410_2	2.15\|2869613\|32\|NZ_CP019410\|CRISPRCasFinder,CRT,PILER-CR	2869613-2869644	32	KU686199	Synechococcus phage S-CAM3 isolate 1010CC42, complete genome	162432-162463	10	0.688
NZ_CP019410_2	2.15\|2869613\|32\|NZ_CP019410\|CRISPRCasFinder,CRT,PILER-CR	2869613-2869644	32	KU686198	Synechococcus phage S-CAM3 isolate 0910TB04, complete genome	162417-162448	10	0.688
NZ_CP019410_2	2.17\|2869735\|32\|NZ_CP019410\|CRISPRCasFinder,CRT,PILER-CR	2869735-2869766	32	NZ_CP016463	Bosea sp. RAC05 plasmid pBSY19_1, complete sequence	434108-434139	10	0.688
NZ_CP019410_1	1.1\|2850741\|32\|NZ_CP019410\|CRISPRCasFinder,CRT	2850741-2850772	32	CP054927	Streptomyces fulvissimus strain NA06532 plasmid unnamed1, complete sequence	47822-47853	11	0.656
NZ_CP019410_1	1.15\|2851595\|32\|NZ_CP019410\|CRISPRCasFinder,CRT,PILER-CR	2851595-2851626	32	NZ_CP025844	Escherichia coli strain 720632 plasmid p720632_94, complete sequence	38649-38680	11	0.656
NZ_CP019410_1	1.15\|2851595\|32\|NZ_CP019410\|CRISPRCasFinder,CRT,PILER-CR	2851595-2851626	32	NZ_CP012501	Escherichia coli strain 08-00022 plasmid pCFSAN004179G, complete sequence	192000-192031	11	0.656
NZ_CP019410_1	1.15\|2851595\|32\|NZ_CP019410\|CRISPRCasFinder,CRT,PILER-CR	2851595-2851626	32	NZ_CP027598	Escherichia coli strain 86-3153 plasmid unnamed	26516-26547	11	0.656
NZ_CP019410_1	1.15\|2851595\|32\|NZ_CP019410\|CRISPRCasFinder,CRT,PILER-CR	2851595-2851626	32	NZ_CP027588	Escherichia coli strain 2013C-4974 plasmid unnamed	6571-6602	11	0.656

1. spacer 1.5|2850985|32|NZ_CP019410|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KX960110 (Escherichia coli strain CREC-TJ2 plasmid pCREC-TJ2-NDM, complete sequence) position: , mismatch: 0, identity: 1.0

gcgatcaccgttcgggcgaactggcgaatcac	CRISPR spacer
gcgatcaccgttcgggcgaactggcgaatcac	Protospacer
********************************

2. spacer 1.5|2850985|32|NZ_CP019410|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KU295131 (Escherichia coli strain BK28009 plasmid pBK28009, complete sequence) position: , mismatch: 0, identity: 1.0

gcgatcaccgttcgggcgaactggcgaatcac	CRISPR spacer
gcgatcaccgttcgggcgaactggcgaatcac	Protospacer
********************************

3. spacer 1.5|2850985|32|NZ_CP019410|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026237 (Citrobacter freundii complex sp. CFNIH3 plasmid pCFR-9161, complete sequence) position: , mismatch: 0, identity: 1.0

gcgatcaccgttcgggcgaactggcgaatcac	CRISPR spacer
gcgatcaccgttcgggcgaactggcgaatcac	Protospacer
********************************

4. spacer 1.5|2850985|32|NZ_CP019410|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP025944 (Escherichia coli strain SCEC020023 plasmid pOXA10_020023, complete sequence) position: , mismatch: 0, identity: 1.0

gcgatcaccgttcgggcgaactggcgaatcac	CRISPR spacer
gcgatcaccgttcgggcgaactggcgaatcac	Protospacer
********************************

5. spacer 1.5|2850985|32|NZ_CP019410|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP038456 (Escherichia coli strain EC-129 plasmid pEC129_3) position: , mismatch: 0, identity: 1.0

gcgatcaccgttcgggcgaactggcgaatcac	CRISPR spacer
gcgatcaccgttcgggcgaactggcgaatcac	Protospacer
********************************

6. spacer 1.5|2850985|32|NZ_CP019410|CRISPRCasFinder,CRT,PILER-CR matches to MH430882 (Salmonella enterica subsp. enterica serovar London strain 3-5 plasmid pSa44-CIP, complete sequence) position: , mismatch: 0, identity: 1.0

gcgatcaccgttcgggcgaactggcgaatcac	CRISPR spacer
gcgatcaccgttcgggcgaactggcgaatcac	Protospacer
********************************

7. spacer 1.5|2850985|32|NZ_CP019410|CRISPRCasFinder,CRT,PILER-CR matches to MH430881 (Salmonella enterica subsp. enterica serovar London strain 3-5 plasmid pSa44-CIP-CRO, complete sequence) position: , mismatch: 0, identity: 1.0

gcgatcaccgttcgggcgaactggcgaatcac	CRISPR spacer
gcgatcaccgttcgggcgaactggcgaatcac	Protospacer
********************************

8. spacer 1.5|2850985|32|NZ_CP019410|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021734 (Escherichia coli strain AR_0114 plasmid unitig_2, complete sequence) position: , mismatch: 0, identity: 1.0

gcgatcaccgttcgggcgaactggcgaatcac	CRISPR spacer
gcgatcaccgttcgggcgaactggcgaatcac	Protospacer
********************************

9. spacer 1.5|2850985|32|NZ_CP019410|CRISPRCasFinder,CRT,PILER-CR matches to MN604267 (Salmonella enterica subsp. enterica serovar London strain SAL-19-0623 plasmid pSAL-19-0623_NDM, complete sequence) position: , mismatch: 0, identity: 1.0

gcgatcaccgttcgggcgaactggcgaatcac	CRISPR spacer
gcgatcaccgttcgggcgaactggcgaatcac	Protospacer
********************************

10. spacer 1.5|2850985|32|NZ_CP019410|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MG870194 (Salmonella enterica subsp. enterica serovar London strain Sa128 plasmid pSa128, complete sequence) position: , mismatch: 0, identity: 1.0

gcgatcaccgttcgggcgaactggcgaatcac	CRISPR spacer
gcgatcaccgttcgggcgaactggcgaatcac	Protospacer
********************************

11. spacer 1.5|2850985|32|NZ_CP019410|CRISPRCasFinder,CRT,PILER-CR matches to MG874043 (Salmonella sp. strain Sa63 plasmid pSa63-CIP, complete sequence) position: , mismatch: 0, identity: 1.0

gcgatcaccgttcgggcgaactggcgaatcac	CRISPR spacer
gcgatcaccgttcgggcgaactggcgaatcac	Protospacer
********************************

12. spacer 1.5|2850985|32|NZ_CP019410|CRISPRCasFinder,CRT,PILER-CR matches to MG874044 (Salmonella sp. strain Sa76 plasmid pSa76-CIP, complete sequence) position: , mismatch: 0, identity: 1.0

gcgatcaccgttcgggcgaactggcgaatcac	CRISPR spacer
gcgatcaccgttcgggcgaactggcgaatcac	Protospacer
********************************

13. spacer 1.19|2851839|32|NZ_CP019410|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KY515226 (Salmonella enterica subsp. enterica serovar Derby strain S701 plasmid AnCo3, complete sequence) position: , mismatch: 0, identity: 1.0

ttttgaagaagtcgcggcgagatggtcggtgg	CRISPR spacer
ttttgaagaagtcgcggcgagatggtcggtgg	Protospacer
********************************

14. spacer 1.19|2851839|32|NZ_CP019410|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KP763470 (Salmonella enterica subsp. enterica serovar Typhimurium strain L946 plasmid pSTM_Phi, complete sequence) position: , mismatch: 0, identity: 1.0

ttttgaagaagtcgcggcgagatggtcggtgg	CRISPR spacer
ttttgaagaagtcgcggcgagatggtcggtgg	Protospacer
********************************

15. spacer 1.24|2852144|32|NZ_CP019410|CRISPRCasFinder,CRT matches to NZ_CP029997 (Salmonella enterica subsp. salamae strain SA20053897 plasmid pSA20053897.2, complete sequence) position: , mismatch: 1, identity: 0.969

gtttcgagaaaagggatcaactgaataaattg	CRISPR spacer
gtttcgagaaaagggatcagctgaataaattg	Protospacer
*******************.************

16. spacer 1.24|2852144|32|NZ_CP019410|CRISPRCasFinder,CRT matches to CP053334 (Salmonella enterica subsp. diarizonae serovar 47:k:z35 strain 2009K1094 plasmid unnamed2, complete sequence) position: , mismatch: 2, identity: 0.938

gtttcgagaaaagggatcaactgaataaattg	CRISPR spacer
gtttcgagaaaagggatcagttgaataaattg	Protospacer
*******************..***********

17. spacer 1.19|2851839|32|NZ_CP019410|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010244 (Escherichia coli strain S56 plasmid B, complete sequence) position: , mismatch: 4, identity: 0.875

ttttgaagaagtcgcggcgagatggtcggtgg	CRISPR spacer
ttttgaagaaatcgcggcgagatggccgattg	Protospacer
**********.**************.**.* *

18. spacer 1.2|2850802|32|NZ_CP019410|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022304 (Thalassococcus sp. S3 plasmid pS3A, complete sequence) position: , mismatch: 5, identity: 0.844

atggat-ggctcatatccggtttctgtttctgc	CRISPR spacer
-tggatcagctcatagccggtttctgtctcttc	Protospacer
 ***** .******* ***********.*** *

19. spacer 1.19|2851839|32|NZ_CP019410|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP044180 (Salmonella enterica subsp. enterica serovar Concord strain AR-0407 plasmid pAR-0407-3, complete sequence) position: , mismatch: 5, identity: 0.844

ttttgaagaagtcgcggcgagatggtcggtgg	CRISPR spacer
ttttgaagaagtcccggcgagatggccgatta	Protospacer
************* ***********.**.* .

20. spacer 1.19|2851839|32|NZ_CP019410|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP030187 (Salmonella enterica strain SA20094620 plasmid pSA20094620.2, complete sequence) position: , mismatch: 5, identity: 0.844

ttttgaagaagtcgcggcgagatggtcggtgg	CRISPR spacer
ttttgaagaagtcccggcgagatggccgatta	Protospacer
************* ***********.**.* .

21. spacer 1.19|2851839|32|NZ_CP019410|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP027108 (Cronobacter sakazakii strain CS-931 plasmid pCsaCS931a, complete sequence) position: , mismatch: 5, identity: 0.844

ttttgaagaagtcgcggcgagatggtcggtgg	CRISPR spacer
ttttgaagaagtcgcggcgagacggctgattg	Protospacer
**********************.**..*.* *

22. spacer 1.2|2850802|32|NZ_CP019410|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP023072 (Sinorhizobium fredii CCBAU 83666 plasmid pSF83666a, complete sequence) position: , mismatch: 6, identity: 0.812

atggatggctcatatccggtttctgtttctgc	CRISPR spacer
agggatgcctcatatccggtttctgttcgtca	Protospacer
* ***** *******************. *

23. spacer 1.4|2850924|32|NZ_CP019410|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KY296095 (Pseudomonas aeruginosa strain 14057 plasmid p14057-KPC, complete sequence) position: , mismatch: 6, identity: 0.812

atattgatactgttctcaagcgccgttttagc	CRISPR spacer
atattgatgctgttctccagcgcccgatcagc	Protospacer
********.******** ******   *.***

24. spacer 1.4|2850924|32|NZ_CP019410|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP024631 (Pseudomonas aeruginosa strain PA59 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.812

atattgatactgttctcaagcgccgttttagc	CRISPR spacer
atattgatgctgttctccagcgcccgatcagc	Protospacer
********.******** ******   *.***

25. spacer 1.4|2850924|32|NZ_CP019410|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MH734334 (Pseudomonas aeruginosa strain 1011 plasmid p1011-KPC2, complete sequence) position: , mismatch: 6, identity: 0.812

atattgatactgttctcaagcgccgttttagc	CRISPR spacer
atattgatgctgttctccagcgcccgatcagc	Protospacer
********.******** ******   *.***

26. spacer 1.10|2851290|32|NZ_CP019410|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019603 (Croceicoccus marinus strain E4A9 plasmid pCME4A9I, complete sequence) position: , mismatch: 6, identity: 0.812

ttcgatcagcctggtacctaatacgtatgctg	CRISPR spacer
ttcgatcagcctggtacctatttcgtaaccgc	Protospacer
******************** * ****  *

27. spacer 2.17|2869735|32|NZ_CP019410|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP054026 (Rhizobium sp. JKLM12A2 plasmid pPR12A205, complete sequence) position: , mismatch: 6, identity: 0.812

gaggtcgcagatggcgagggcga-cgtcattaa	CRISPR spacer
gaggtcgcagatgtcgacggcgatcgccatgc-	Protospacer
************* *** ***** **.***

28. spacer 2.17|2869735|32|NZ_CP019410|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP054036 (Rhizobium sp. JKLM13E plasmid pPR13E05, complete sequence) position: , mismatch: 6, identity: 0.812

gaggtcgcagatggcgagggcga-cgtcattaa	CRISPR spacer
gaggtcgcagatgtcgacggcgatcgccatgc-	Protospacer
************* *** ***** **.***

29. spacer 1.4|2850924|32|NZ_CP019410|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020561 (Pseudomonas aeruginosa strain CR1 plasmid pCR1, complete sequence) position: , mismatch: 7, identity: 0.781

atattgatactgttctcaagcgccgttttagc	CRISPR spacer
atattgatgctgttctccagcgcccgatccgc	Protospacer
********.******** ******   *. **

30. spacer 1.4|2850924|32|NZ_CP019410|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MN433456 (Pseudomonas aeruginosa strain PAB546 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

atattgatactgttctcaagcgccgttttagc	CRISPR spacer
atattgatgctgttctccagcgcccgatccgc	Protospacer
********.******** ******   *. **

31. spacer 2.11|2869369|32|NZ_CP019410|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029834 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed4, complete sequence) position: , mismatch: 7, identity: 0.781

ttcagcgtgatcggttcggctgtat-tcaacac	CRISPR spacer
ttcaccgtgatcggttcggcggtccgccaata-	Protospacer
**** *************** ** . .***.*

32. spacer 1.3|2850863|32|NZ_CP019410|CRISPRCasFinder,CRT,PILER-CR matches to MN855803 (Bacteriophage sp. isolate 108, partial genome) position: , mismatch: 8, identity: 0.75

gcgaaatagtggggaaaaacccctggttaacc	CRISPR spacer
tttcaatattggggaaaaacccctcgttacct	Protospacer
 .  **** *************** **** *.

33. spacer 1.4|2850924|32|NZ_CP019410|CRISPRCasFinder,CRT,PILER-CR matches to NC_021709 (Alteromonas mediterranea 615 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

atattgatactgttctcaagcgccgttttagc	CRISPR spacer
atggtatcgctgttctcaatcgcctttttagc	Protospacer
**. *. ..********** **** *******

34. spacer 1.13|2851473|32|NZ_CP019410|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP049914 (Vibrio sp. HDW18 plasmid p_unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

ctcagcaggctggaggagatgatcaaaaatgg----	CRISPR spacer
ctcagcaggctggaagagacgatc----gtgttacc	Protospacer
**************.****.****    .**

35. spacer 1.13|2851473|32|NZ_CP019410|CRISPRCasFinder,CRT,PILER-CR matches to NC_018688 (Bacillus thuringiensis MC28 plasmid pMC319, complete sequence) position: , mismatch: 8, identity: 0.75

ctcagcaggctggaggagatgatcaaaaatgg	CRISPR spacer
atgataaggctggaagagatgaacaaaaatta	Protospacer
 * *  ********.******* ******* .

36. spacer 2.8|2869185|32|NZ_CP019410|CRISPRCasFinder,CRT,PILER-CR matches to MH593832 (Phage sp. isolate ctcj9, complete genome) position: , mismatch: 8, identity: 0.75

gctggattaaagccagtgaccgcgacatctcg	CRISPR spacer
gctggattgaagccagcgaccgcgatgtgagc	Protospacer
********.*******.********..*

37. spacer 2.17|2869735|32|NZ_CP019410|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP028972 (Aminobacter sp. MSH1 plasmid pUSP4, complete sequence) position: , mismatch: 8, identity: 0.75

gaggtcgcagatggcgagggcgacgtcattaa	CRISPR spacer
caggtcgcagttggcgacggcgacgggaatcc	Protospacer
 ********* ****** *******  * *

38. spacer 2.19|2869857|32|NZ_CP019410|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP053689 (Arthrobacter citreus strain NEB 577 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

tggcccaccacttatccagtttttagataagt	CRISPR spacer
ccattcaccagttatccagttcttagataact	Protospacer
. ...***** **********.******** *

39. spacer 3.1|3622969|30|NZ_CP019410|CRISPRCasFinder matches to NZ_CP019064 (Rahnella sp. ERMR1:05 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.733

agacattaccaccaggctgatatcaatgcg	CRISPR spacer
agatattaccaacaggctgatattgacaac	Protospacer
***.******* ***********..*..

40. spacer 1.2|2850802|32|NZ_CP019410|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP049157 (Caballeronia sp. SBC1 plasmid pSBC1_1, complete sequence) position: , mismatch: 9, identity: 0.719

atggatggctcatatccggtttctgtttctgc	CRISPR spacer
tcggctggctcatttccggtttctgggtgacc	Protospacer
 .** ******** ***********  *   *

41. spacer 1.2|2850802|32|NZ_CP019410|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP049317 (Caballeronia sp. SBC2 plasmid pSBC2-1, complete sequence) position: , mismatch: 9, identity: 0.719

atggatggctcatatccggtttctgtttctgc	CRISPR spacer
tcggctggctcatttccggtttctgggtgacc	Protospacer
 .** ******** ***********  *   *

42. spacer 1.5|2850985|32|NZ_CP019410|CRISPRCasFinder,CRT,PILER-CR matches to LN890663 (Acinetobacter phage vB_AbaS_Loki genome assembly, complete genome: monopartite) position: , mismatch: 9, identity: 0.719

gcgatcaccgttcgggcgaactggcgaatcac	CRISPR spacer
cgcatcaccgttcggacgaattggcgaaattg	Protospacer
   ************.****.******* .

43. spacer 1.5|2850985|32|NZ_CP019410|CRISPRCasFinder,CRT,PILER-CR matches to MT152150 (Pseudomonas phage 8P, complete genome) position: , mismatch: 9, identity: 0.719

gcgatcaccgttcgggcgaactggcgaatcac	CRISPR spacer
acgatcagcgttcgggccaactggtccggcaa	Protospacer
.****** ********* ******.  . **

44. spacer 1.5|2850985|32|NZ_CP019410|CRISPRCasFinder,CRT,PILER-CR matches to NC_048047 (Caulobacter phage CcrBL9, complete genome) position: , mismatch: 9, identity: 0.719

gcgatcaccgttcgggcgaactggcgaatcac	CRISPR spacer
gttgtgcccgttcgggcgaaatggcgactcta	Protospacer
*. .*  ************* ****** **

45. spacer 1.8|2851168|32|NZ_CP019410|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045296 (Paenibacillus cellulositrophicus strain KACC 16577 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

ggtctttaactcaggcaggttgatatccagta	CRISPR spacer
tccatccaactcaggcagcatgatatccagaa	Protospacer
  . *..***********  ********** *

46. spacer 1.8|2851168|32|NZ_CP019410|CRISPRCasFinder,CRT,PILER-CR matches to NC_011273 (Mycobacterium phage Myrna, complete genome) position: , mismatch: 9, identity: 0.719

ggtctttaactcaggcaggttgatatccagta	CRISPR spacer
accgatgaactcaggcaggatgatctccagga	Protospacer
. .  * ************ **** ***** *

47. spacer 1.19|2851839|32|NZ_CP019410|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP023739 (Methylosinus trichosporium OB3b plasmid pOB3b2, complete sequence) position: , mismatch: 9, identity: 0.719

ttttgaagaagtcgcggcgagatggtcggtgg	CRISPR spacer
catcgacgaagtcgcggcgagatcgtcgaatc	Protospacer
. *.** **************** ****.

48. spacer 2.6|2869063|32|NZ_CP019410|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020911 (Rhizobium etli strain NXC12 plasmid pRetNXC12e, complete sequence) position: , mismatch: 9, identity: 0.719

atagatggcgccaacaccgagaa---tcgggattc	CRISPR spacer
atagaaggcggcaacaccgagaaaacacaaaa---	Protospacer
***** **** ************    *...*

49. spacer 2.6|2869063|32|NZ_CP019410|CRISPRCasFinder,CRT,PILER-CR matches to NC_021911 (Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1f, complete sequence) position: , mismatch: 9, identity: 0.719

atagatggcgccaacaccgagaa---tcgggattc	CRISPR spacer
atagaaggcggcaacaccgagaaaacacaaaa---	Protospacer
***** **** ************    *...*

50. spacer 2.15|2869613|32|NZ_CP019410|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009417 (Jeotgalibacillus malaysiensis strain malaysiensis plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

gccttcctgtaattcagcatacttcgacgtac	CRISPR spacer
accttcttgtaattcatcatacttctcttcaa	Protospacer
.*****.********* ********  . .*

51. spacer 2.17|2869735|32|NZ_CP019410|CRISPRCasFinder,CRT,PILER-CR matches to NC_010311 (Streptomyces sp. HK1 plasmid pSHK1, complete sequence) position: , mismatch: 9, identity: 0.719

gaggtcgcagatggcgagggcgacgtcattaa	CRISPR spacer
gccgtcgccgagggcgagggcgacgtgctggg	Protospacer
*  ***** ** **************  * ..

52. spacer 2.17|2869735|32|NZ_CP019410|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032322 (Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence) position: , mismatch: 9, identity: 0.719

gaggtcgcagatggcgagggcgacgtcattaa	CRISPR spacer
cagatcgcagatggcgaggtcgaccttttcgg	Protospacer
 **.*************** **** *. *...

53. spacer 2.17|2869735|32|NZ_CP019410|CRISPRCasFinder,CRT,PILER-CR matches to ASHF01000034 (Streptomyces sp. GBA 94-10 plasmid pGBA1, complete sequence, whole genome shotgun sequence) position: , mismatch: 9, identity: 0.719

gaggtcgcagatggcgagggcgacgtcattaa	CRISPR spacer
caggacgccgatggcgagggcgaccttggcga	Protospacer
 *** *** *************** *.. ..*

54. spacer 2.17|2869735|32|NZ_CP019410|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022367 (Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence) position: , mismatch: 9, identity: 0.719

gaggtcgcagatggcgagggcgacgtcattaa	CRISPR spacer
caggtcgcagatggcgagatcgaccttttccg	Protospacer
 *****************. **** *. *. .

55. spacer 2.17|2869735|32|NZ_CP019410|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP007130 (Gemmatirosa kalamazoonesis strain KBS708 plasmid 2, complete sequence) position: , mismatch: 9, identity: 0.719

gaggtcgcagatggcgagggcgacgtcattaa	CRISPR spacer
gcggtcgcaggcggcgagggcgacgagcgaga	Protospacer
* ********..*************     .*

56. spacer 2.17|2869735|32|NZ_CP019410|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP007794 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p1, complete sequence) position: , mismatch: 9, identity: 0.719

gaggtcgcagatggcgagggcgacgtcattaa	CRISPR spacer
cagatcgcagatggcgaggtcgaccttttcgg	Protospacer
 **.*************** **** *. *...

57. spacer 2.17|2869735|32|NZ_CP019410|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029339 (Streptomyces sp. SM17 plasmid pSM17A, complete sequence) position: , mismatch: 9, identity: 0.719

gaggtcgcagatggcgagggcgacgtcattaa	CRISPR spacer
gccgtcgccgagggcgagggcgacgtgctggg	Protospacer
*  ***** ** **************  * ..

58. spacer 2.17|2869735|32|NZ_CP019410|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032340 (Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence) position: , mismatch: 9, identity: 0.719

gaggtcgcagatggcgagggcgacgtcattaa	CRISPR spacer
caggtcgcagatggcgagatcgaccttttccg	Protospacer
 *****************. **** *. *. .

59. spacer 2.17|2869735|32|NZ_CP019410|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026489 (Streptomyces sp. 604F plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

gaggtcgcagatggcgagggcgacgtcattaa	CRISPR spacer
gccgtcgccgagggcgagggcgacgtgctggg	Protospacer
*  ***** ** **************  * ..

60. spacer 2.17|2869735|32|NZ_CP019410|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP012915 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence) position: , mismatch: 9, identity: 0.719

gaggtcgcagatggcgagggcgacgtcattaa	CRISPR spacer
caggtcgcagatggcgagatcgaccttttccg	Protospacer
 *****************. **** *. *. .

61. spacer 2.17|2869735|32|NZ_CP019410|CRISPRCasFinder,CRT,PILER-CR matches to MN204498 (Streptomyces phage Saftant, complete genome) position: , mismatch: 9, identity: 0.719

gaggtcgcagatggcgagggcgacgtcattaa	CRISPR spacer
ggctacgcagacggcgagtgcgacgtcacgac	Protospacer
*.   ******.****** *********. *

62. spacer 1.8|2851168|32|NZ_CP019410|CRISPRCasFinder,CRT,PILER-CR matches to NC_010699 (Erwinia tasmaniensis Et1/99 plasmid pET45, complete sequence) position: , mismatch: 10, identity: 0.688

ggtctttaactcaggcaggttgatatccagta	CRISPR spacer
cggggcggactcaggcaggctgatatccggtg	Protospacer
 *   . .***********.********.**.

63. spacer 1.20|2851900|32|NZ_CP019410|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP033346 (Salmonella enterica subsp. enterica serovar Tennessee strain CFSAN076210 plasmid pCFSAN076210, complete sequence) position: , mismatch: 10, identity: 0.688

ctgacggctgcaattaaagctatccaaattac	CRISPR spacer
gttctggctgcaatgaaagctatcaaaacctt	Protospacer
 *  .********* ********* ***.. .

64. spacer 1.20|2851900|32|NZ_CP019410|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP014995 (Salmonella enterica subsp. enterica serovar Tennessee strain CFSAN001387 plasmid, complete sequence) position: , mismatch: 10, identity: 0.688

ctgacggctgcaattaaagctatccaaattac	CRISPR spacer
gttctggctgcaatgaaagctatcaaaacctt	Protospacer
 *  .********* ********* ***.. .

65. spacer 2.15|2869613|32|NZ_CP019410|CRISPRCasFinder,CRT,PILER-CR matches to KU686197 (Synechococcus phage S-CAM3 isolate 0808SB25, complete genome) position: , mismatch: 10, identity: 0.688

gccttcctgtaattcagcatacttcgacgtac	CRISPR spacer
tccttcctgtattttagcatacttgtgctcga	Protospacer
 ********** **.*********  .* ..

66. spacer 2.15|2869613|32|NZ_CP019410|CRISPRCasFinder,CRT,PILER-CR matches to KU686199 (Synechococcus phage S-CAM3 isolate 1010CC42, complete genome) position: , mismatch: 10, identity: 0.688

gccttcctgtaattcagcatacttcgacgtac	CRISPR spacer
tccttcctgtattttagcatacttgtgctcga	Protospacer
 ********** **.*********  .* ..

67. spacer 2.15|2869613|32|NZ_CP019410|CRISPRCasFinder,CRT,PILER-CR matches to KU686198 (Synechococcus phage S-CAM3 isolate 0910TB04, complete genome) position: , mismatch: 10, identity: 0.688

gccttcctgtaattcagcatacttcgacgtac	CRISPR spacer
tccttcctgtattttagcatacttgtgctcga	Protospacer
 ********** **.*********  .* ..

68. spacer 2.17|2869735|32|NZ_CP019410|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016463 (Bosea sp. RAC05 plasmid pBSY19_1, complete sequence) position: , mismatch: 10, identity: 0.688

gaggtcgcagatggcgagggcgacgtcattaa	CRISPR spacer
aaggtcgctgatggcgagggcaacacgcgcag	Protospacer
.******* ************.**..   .*.

69. spacer 1.1|2850741|32|NZ_CP019410|CRISPRCasFinder,CRT matches to CP054927 (Streptomyces fulvissimus strain NA06532 plasmid unnamed1, complete sequence) position: , mismatch: 11, identity: 0.656

ttttcagcccttgccgactgcggaacgcccct	CRISPR spacer
cgccgcacccttgccgactgcgggatgcccga	Protospacer
. ..  .****************.*.****

70. spacer 1.15|2851595|32|NZ_CP019410|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP025844 (Escherichia coli strain 720632 plasmid p720632_94, complete sequence) position: , mismatch: 11, identity: 0.656

ccgccggctgaggatgtccgctggacacccag	CRISPR spacer
gttccggctgaggatgaccgctgaactgttgc	Protospacer
 . ************* ******.**  ...

71. spacer 1.15|2851595|32|NZ_CP019410|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP012501 (Escherichia coli strain 08-00022 plasmid pCFSAN004179G, complete sequence) position: , mismatch: 11, identity: 0.656

ccgccggctgaggatgtccgctggacacccag	CRISPR spacer
gttccggctgaggatgaccgctgaactgttgc	Protospacer
 . ************* ******.**  ...

72. spacer 1.15|2851595|32|NZ_CP019410|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP027598 (Escherichia coli strain 86-3153 plasmid unnamed) position: , mismatch: 11, identity: 0.656

ccgccggctgaggatgtccgctggacacccag	CRISPR spacer
gttccggctgaggatgaccgctgaactgttgc	Protospacer
 . ************* ******.**  ...

73. spacer 1.15|2851595|32|NZ_CP019410|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP027588 (Escherichia coli strain 2013C-4974 plasmid unnamed) position: , mismatch: 11, identity: 0.656

ccgccggctgaggatgtccgctggacacccag	CRISPR spacer
gttccggctgaggatgaccgctgaactgttgc	Protospacer
 . ************* ******.**  ...

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1192366 : 1199627

Escherichia_phage(42.86%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000444508.1\|1192366_1193617_+	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	1.1e-19	92.6
WP_076726407.1\|1194412_1194766_+	hypothetical protein	NA	NA	NA	NA
WP_058331234.1\|1195198_1195612_+	subtilase cytotoxin subunit B	A0A0U2KD34	Escherichia_phage	8.4e-20	39.5
WP_058331233.1\|1195628_1196357_+	pertussis-like toxin subunit ArtA	A0A0U2KD26	Escherichia_phage	4.1e-62	52.9
WP_000158843.1\|1196548_1197091_+	glycoside hydrolase family 108 protein	A0A0U2S643	Escherichia_phage	6.2e-71	67.0
WP_001277616.1\|1197239_1197617_-	DUF1353 domain-containing protein	I1TQ41	Pseudomonas_phage	2.2e-14	38.4
WP_076728165.1\|1197689_1198508_-	cytolethal distending toxin subunit B family protein	A5LH53	Enterobacteria_phage	1.5e-60	48.5
WP_058331232.1\|1199005_1199170_+	hypothetical protein	NA	NA	NA	NA
WP_000497451.1\|1199387_1199627_-	virulence protein MsgA	K7P6H1	Enterobacteria_phage	8.5e-33	88.6

DBSCAN-SWA_2

1833934 : 1934257

106

Salmonella_phage(25.37%)

holin,tail,terminase,portal,transposase,protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000984498.1\|1833934_1834816_-\|protease	protease HtpX	NA	NA	NA	NA
WP_001091237.1\|1835009_1837058_-	carboxy terminal-processing peptidase	A0A0R6PIZ1	Moraxella_phage	8.0e-87	33.5
WP_000431401.1\|1837077_1837764_-	RNA chaperone ProQ	NA	NA	NA	NA
WP_001518229.1\|1837861_1838359_-	GAF domain-containing protein	NA	NA	NA	NA
WP_001207293.1\|1838487_1839771_+	membrane integrity lipid transport subunit YebS	NA	NA	NA	NA
WP_156010608.1\|1839739_1842373_+	MCE family protein	NA	NA	NA	NA
WP_076728194.1\|1842450_1843890_+	16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF	NA	NA	NA	NA
WP_024131167.1\|1844007_1844244_+	DUF1480 family protein	NA	NA	NA	NA
WP_000457838.1\|1844354_1844546_+	YebW family protein	NA	NA	NA	NA
WP_024798206.1\|1844564_1845215_-	protein-serine/threonine phosphatase	A0A222YWF0	Escherichia_phage	1.1e-58	51.4
WP_001134853.1\|1845438_1845603_-	hypothetical protein	NA	NA	NA	NA
WP_076726688.1\|1845887_1846610_-	SPI-1 type III secretion system guanine nucleotide exchange factor SopE2	NA	NA	NA	NA
WP_076726691.1\|1848015_1848492_+	hypothetical protein	NA	NA	NA	NA
WP_076726692.1\|1849062_1850280_-\|transposase	IS4 family transposase	S5FM71	Shigella_phage	5.5e-136	60.7
WP_076726694.1\|1850418_1851102_-	PipA/GogA/GtgA family type III secretion system effector	Q9MBM0	Phage_Gifsy-2	3.1e-88	73.4
WP_000722368.1\|1855307_1855661_-	YebY family protein	NA	NA	NA	NA
WP_017441953.1\|1855677_1856553_-	copper homeostasis membrane protein CopD	NA	NA	NA	NA
WP_000168393.1\|1856553_1856928_-	CopC domain-containing protein YobA	NA	NA	NA	NA
WP_000856224.1\|1857065_1857296_+	DNA polymerase III subunit theta	H9C187	Pectobacterium_phage	2.9e-14	60.3
WP_000100257.1\|1857403_1858060_+	carbon-nitrogen hydrolase family protein	NA	NA	NA	NA
WP_058331778.1\|1858083_1858782_+	exodeoxyribonuclease X	Q6UAU3	Klebsiella_phage	1.6e-07	41.6
WP_076726696.1\|1858816_1860868_-	oligopeptidase B	NA	NA	NA	NA
WP_000024707.1\|1861080_1861740_-	tellurite resistance TerB family protein	NA	NA	NA	NA
WP_001042123.1\|1861833_1862187_-	hypothetical protein	NA	NA	NA	NA
WP_001579458.1\|1862254_1862545_-	DNA damage-inducible protein YebG	NA	NA	NA	NA
WP_076726697.1\|1862675_1863854_+	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA
WP_000800494.1\|1863953_1864595_-	bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase	NA	NA	NA	NA
WP_076726700.1\|1864632_1866444_-	phosphogluconate dehydratase	NA	NA	NA	NA
WP_000301711.1\|1866678_1868154_-	glucose-6-phosphate dehydrogenase	H6WFS4	Cyanophage	2.6e-79	37.5
WP_001056719.1\|1868495_1869365_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
WP_000091156.1\|1869488_1870931_+	pyruvate kinase	NA	NA	NA	NA
WP_000448398.1\|1871003_1871975_-	lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase	NA	NA	NA	NA
WP_001184030.1\|1872091_1873411_-	murein DD-endopeptidase MepM	A8ATH6	Listeria_phage	2.6e-14	40.9
WP_000939597.1\|1873426_1874371_-	zinc ABC transporter substrate-binding protein ZnuA	NA	NA	NA	NA
WP_000203023.1\|1874449_1875205_+	zinc ABC transporter ATP-binding protein ZnuC	G3M9Y6	Bacillus_virus	8.5e-18	29.4
WP_000571508.1\|1875201_1875987_+	zinc ABC transporter permease subunit ZnuB	NA	NA	NA	NA
WP_000568502.1\|1876065_1877076_-	Holliday junction branch migration DNA helicase RuvB	A0A127AWE7	Bacillus_phage	2.4e-07	25.9
WP_000580335.1\|1877084_1877696_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA
WP_188317864.1\|1878055_1878748_-	hypothetical protein	NA	NA	NA	NA
WP_000716739.1\|1878956_1879556_+	YebB family permuted papain-like enzyme	NA	NA	NA	NA
WP_000022509.1\|1879557_1880079_-	crossover junction endodeoxyribonuclease RuvC	G3MA90	Bacillus_virus	2.6e-10	35.1
WP_000907242.1\|1880115_1880856_-	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_000653693.1\|1880885_1881338_-	dihydroneopterin triphosphate diphosphatase	NA	NA	NA	NA
WP_001258629.1\|1881440_1883213_-\|tRNA	aspartate--tRNA ligase	NA	NA	NA	NA
WP_023197261.1\|1883537_1884104_+	hydrolase	NA	NA	NA	NA
WP_076726704.1\|1884426_1885098_+	SOS response-associated peptidase	A0A2H4J5W2	uncultured_Caudovirales_phage	4.5e-79	61.3
WP_000394200.1\|1886360_1886780_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	3.8e-36	59.8
WP_076728199.1\|1886951_1887050_-	helix-turn-helix domain-containing protein	S4TTF2	Salmonella_phage	5.2e-05	85.7
WP_140439314.1\|1887289_1887415_+	hypothetical protein	NA	NA	NA	NA
WP_076726705.1\|1887467_1888703_-\|tail	tail fiber domain-containing protein	Q5G8V6	Enterobacteria_phage	8.4e-124	60.2
WP_058116489.1\|1888712_1889672_-	hypothetical protein	H6WRW5	Salmonella_phage	2.6e-181	98.4
WP_076726708.1\|1889680_1892893_-	host specificity protein J	O64335	Escherichia_phage	0.0e+00	84.4
WP_076726710.1\|1892947_1893553_-\|tail	tail assembly protein	K7PGY0	Enterobacteria_phage	2.9e-101	97.5
WP_076726712.1\|1893596_1893938_-	hypothetical protein	K7PLP0	Enterobacteria_phage	1.5e-54	94.7
WP_076726714.1\|1893967_1894678_-	C40 family peptidase	K7P6F5	Enterobacteria_phage	8.5e-137	91.9
WP_076726716.1\|1894679_1895435_-\|tail	phage minor tail protein L	K7PGX3	Enterobacteria_phage	1.6e-130	85.7
WP_048216155.1\|1895431_1895779_-\|tail	phage tail protein	K7PJT2	Enterobacteria_phage	3.0e-39	69.6
WP_076726718.1\|1895782_1898299_-\|tail	phage tail tape measure protein	K7PKR0	Enterobacteria_phage	0.0e+00	70.2
WP_076726720.1\|1898276_1898597_-\|tail	phage tail assembly protein T	K7PHE1	Enterobacteria_phage	6.1e-34	69.5
WP_076726722.1\|1898605_1899013_-\|tail	phage minor tail protein G	K7PM17	Enterobacteria_phage	2.9e-25	58.6
WP_076726724.1\|1899049_1899787_-	Ig-like domain-containing protein	O64327	Escherichia_phage	1.8e-89	66.9
WP_008784478.1\|1899794_1900193_-\|tail	tail protein	K7PHM6	Enterobacterial_phage	4.0e-43	62.8
WP_076726726.1\|1900189_1900744_-\|tail	phage tail protein	K7P7A8	Enterobacteria_phage	3.1e-62	76.7
WP_076726727.1\|1900756_1901032_-	ATP-binding protein	K7PH43	Enterobacteria_phage	1.5e-25	60.4
WP_008784475.1\|1901024_1901351_-	DUF2190 family protein	K7PJY3	Enterobacterial_phage	1.1e-30	60.2
WP_155553807.1\|1901442_1903485_-\|protease	ATP-dependent Clp protease proteolytic subunit	K7PKX4	Enterobacterial_phage	0.0e+00	84.9
WP_076726731.1\|1903411_1904920_-\|portal	phage portal protein	K7PHM5	Enterobacterial_phage	1.4e-258	86.7
WP_001082414.1\|1904916_1905132_-	hypothetical protein	A5LH28	Enterobacteria_phage	1.5e-25	82.9
WP_076726733.1\|1905128_1907231_-\|terminase	phage terminase large subunit family protein	K7PH52	Enterobacterial_phage	0.0e+00	86.3
WP_044700360.1\|1907230_1907719_-	DUF1441 family protein	K7PJY2	Enterobacterial_phage	8.9e-77	94.4
WP_188317865.1\|1907905_1908406_-	hypothetical protein	K7PKT0	Enterobacteria_phage	9.9e-15	49.4
WP_076726736.1\|1908467_1908659_-	hypothetical protein	Q8W634	Enterobacteria_phage	2.6e-08	50.0
WP_076726738.1\|1908692_1909232_-	DUF2514 domain-containing protein	A0A193GYI0	Enterobacter_phage	1.1e-06	28.2
WP_076726739.1\|1909228_1909846_-	glycoside hydrolase family 19 protein	Q8HA86	Salmonella_phage	2.2e-93	80.4
WP_000250465.1\|1909845_1910127_-\|holin	phage holin family protein	A0A0U2SHD1	Escherichia_phage	8.2e-19	51.1
WP_023171055.1\|1910113_1910500_-\|holin	phage holin family protein	A0A192Y8P2	Salmonella_phage	8.9e-56	92.2
WP_000578420.1\|1910650_1911574_+	hypothetical protein	A0A1B5FPA3	Escherichia_phage	2.1e-42	56.4
WP_023171057.1\|1911680_1912511_-	antitermination protein	A0A1B5FPA5	Escherichia_phage	5.0e-56	43.3
WP_076728202.1\|1912541_1913531_-	DUF968 domain-containing protein	A0A1C9IHZ5	Salmonella_phage	2.6e-192	98.5
WP_024150661.1\|1913538_1914399_-	KilA-N domain-containing protein	Q8HA92	Salmonella_phage	9.2e-162	99.3
WP_057515278.1\|1914415_1914805_-	RusA family crossover junction endodeoxyribonuclease	A0A192Y8N5	Salmonella_phage	3.2e-61	87.6
WP_076726741.1\|1914801_1915122_-	Rrf2 family transcriptional regulator	S5FXP5	Shigella_phage	7.4e-24	56.6
WP_076726743.1\|1915118_1916912_-	DNA cytosine methyltransferase	H9C171	Pectobacterium_phage	1.7e-218	56.9
WP_076726744.1\|1916904_1917780_-	phage N-6-adenine-methyltransferase	Q8HA94	Salmonella_phage	4.3e-114	66.8
WP_023219701.1\|1917779_1918262_-	PerC family transcriptional regulator	Q8HA95	Salmonella_phage	5.5e-87	99.4
WP_076726746.1\|1918263_1919223_-	helix-turn-helix domain-containing protein	U5P0A0	Shigella_phage	3.5e-117	80.3
WP_072050186.1\|1919212_1919392_-	DUF4222 domain-containing protein	S5M7S5	Escherichia_phage	2.1e-15	69.1
WP_023139406.1\|1919555_1920110_-	hypothetical protein	A0A1C9II13	Salmonella_phage	1.2e-101	99.5
WP_001749160.1\|1920153_1920354_-	helix-turn-helix domain-containing protein	U5P445	Shigella_phage	2.5e-22	81.5
WP_001749159.1\|1920442_1921117_+	LexA family transcriptional regulator	U5P0T5	Shigella_phage	1.7e-115	86.9
WP_000997190.1\|1921896_1922268_+	hypothetical protein	Q8HAA1	Salmonella_phage	1.1e-63	100.0
WP_076726747.1\|1922325_1923153_+	DUF2303 family protein	Q8HAA2	Salmonella_phage	2.7e-150	98.2
WP_057515271.1\|1923289_1923829_+	hypothetical protein	A0A192Y8M4	Salmonella_phage	7.7e-98	99.4
WP_076726749.1\|1923899_1924433_+	hypothetical protein	A0A192Y7N1	Salmonella_phage	1.6e-92	91.0
WP_000224239.1\|1924434_1924692_+	hypothetical protein	A0A192Y5W0	Salmonella_phage	4.5e-40	95.3
WP_078057667.1\|1924702_1925551_+	hypothetical protein	Q8HAA7	Salmonella_phage	6.1e-57	44.3
WP_076726751.1\|1925547_1926117_+	3'-5' exoribonuclease	A0A192Y6E0	Salmonella_phage	2.4e-89	82.0
WP_076726752.1\|1926155_1926392_+	excisionase family protein	Q8W657	Enterobacteria_phage	1.0e-38	91.0
WP_076726754.1\|1926450_1927764_+	DUF3596 domain-containing protein	Q8W658	Enterobacteria_phage	9.6e-227	85.8
WP_076726756.1\|1927742_1928516_+	DUF72 domain-containing protein	Q859D1	Escherichia_coli_phage	5.5e-57	80.3
WP_000252975.1\|1928568_1928964_+	MAPEG family protein	NA	NA	NA	NA
WP_000019609.1\|1929004_1929748_+	carboxy-S-adenosyl-L-methionine synthase CmoA	F5B419	Synechococcus_phage	5.4e-25	30.9
WP_076726758.1\|1929744_1930716_+\|tRNA	tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB	NA	NA	NA	NA
WP_001185780.1\|1930951_1931698_-	copper homeostasis protein CutC	NA	NA	NA	NA
WP_000024796.1\|1931717_1932287_-	VOC family protein	NA	NA	NA	NA
WP_001025360.1\|1932523_1934257_+\|tRNA	arginine--tRNA ligase	A0A2K9L6Z2	Tupanvirus	4.9e-85	33.4

DBSCAN-SWA_3

2003457 : 2010725

Morganella_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001157305.1\|2003457_2004888_-	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	1.0e-104	57.4
WP_076726787.1\|2004961_2005657_-	phosphohydrolase	A0A1D6Y7U0	Golden_Marseillevirus	2.8e-07	27.1
WP_000107437.1\|2005736_2006048_-	hypothetical protein	NA	NA	NA	NA
WP_001080675.1\|2006697_2007909_+	porin OmpC	Q1MVN1	Enterobacteria_phage	1.3e-108	56.0
WP_024131109.1\|2008168_2008357_-	hypothetical protein	NA	NA	NA	NA
WP_000208509.1\|2008367_2008580_-	cold-shock protein	A0A1W6JNX5	Morganella_phage	3.9e-21	70.0
WP_076726789.1\|2009034_2010303_-	Y-family DNA polymerase	I6RSM4	Salmonella_phage	3.2e-227	92.2
WP_023200548.1\|2010305_2010725_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	8.5e-36	60.5

DBSCAN-SWA_4

2097898 : 2108406

Enterobacteria_phage(37.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_076726830.1\|2097898_2099212_-	lipopolysaccharide biosynthesis protein RfbH	H8ZJ36	Ostreococcus_tauri_virus	4.1e-52	35.1
WP_076726832.1\|2099238_2100318_-	CDP-glucose 4,6-dehydratase	A0A222YY99	Synechococcus_phage	1.7e-16	24.9
WP_000648783.1\|2100322_2101096_-	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA
WP_076726833.1\|2101111_2102086_-	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA
WP_076726835.1\|2102091_2102643_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	1.3e-52	58.6
WP_000857535.1\|2102643_2103522_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	2.1e-108	65.5
WP_001023659.1\|2103569_2104469_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	5.1e-30	36.0
WP_000697846.1\|2104468_2105554_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.6e-102	53.9
WP_076726837.1\|2105931_2106825_-	GalU regulator GalF	A0A127AW70	Bacillus_phage	2.8e-44	42.2
WP_076726838.1\|2107002_2108406_-	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	1.8e-21	26.5

DBSCAN-SWA_5

2175987 : 2185158

Enterobacteria_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000195343.1\|2175987_2178021_+\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	1.4e-54	27.6
WP_000703137.1\|2178261_2178720_+	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	8.4e-53	72.5
WP_076726872.1\|2178891_2179422_+	YehR family lipoprotein	NA	NA	NA	NA
WP_000950413.1\|2179478_2179946_-	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	3.9e-74	90.3
WP_076726874.1\|2179992_2180712_-	two-component system response regulator BtsR	NA	NA	NA	NA
WP_000272850.1\|2180708_2182394_-	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	4.8e-279	91.3
WP_001240418.1\|2182616_2183348_+	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	4.5e-101	87.9
WP_001261696.1\|2183407_2183515_+	protein YohO	NA	NA	NA	NA
WP_023225924.1\|2183495_2184227_-	ABC transporter permease	NA	NA	NA	NA
WP_000569166.1\|2184210_2185158_-	ABC transporter ATP-binding protein	F2Y1V5	Organic_Lake_phycodnavirus	3.7e-10	27.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP019410

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection