CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP019412	Salmonella enterica subsp. enterica serovar Koessen str. S-1501 chromosome, complete genome	3 crisprs	DinG,cas3,DEDDh,cas14j,csa3,WYL,PD-DExK	0	2	6	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP019412_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP019412_1

2857936-2858023

Orphan

I-E

Consensus_repeat	Method
GTTTATCCCCGCTGGCGCGGGGAACAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP019412_1

>merge|NZ_CP019412|1|2857936-2858023|CRISPRCasFinder
GTTTATCCCCGCTGGCGCGGGGAACACCCTGTTTCAGGTTACTACCTAATCCGTTAAGGCGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP019412|1|1|2857936-2858023|CRISPRCasFinder
GTTTATCCCCGCTGGCGCGGGGAACAC	CCTGTTTCAGGTTACTACCTAATCCGTTAAGGCG
GTTTATCCCCGCTGGCGCGGGGAACAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019412.1\|WP_001290665.1\|2861847_2863560_-\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
NZ_CP019412.1\|WP_000108312.1\|2865794_2866157_+\|6-carboxytetrahydropterin-synthase-QueD	unknown	unknown	gnl\|CDD\|238264
NZ_CP019412.1\|WP_000517480.1\|2852796_2853108_-\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
NZ_CP019412.1\|WP_001667037.1\|2866244_2867042_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|224158
NZ_CP019412.1\|WP_000372384.1\|2855713_2856622_-\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375
NZ_CP019412.1\|WP_023212181.1\|2856872_2857919_+\|aminopeptidase	unknown	unknown	gnl\|CDD\|182299
NZ_CP019412.1\|WP_001199956.1\|2868013_2868685_-\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
NZ_CP019412.1\|WP_001219244.1\|2851588_2852068_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
NZ_CP019412.1\|WP_000210864.1\|2870201_2871839_-\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437
NZ_CP019412.1\|WP_000210909.1\|2863559_2865359_-\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|182862
NZ_CP019412.1\|WP_001221538.1\|2849800_2850562_-\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
NZ_CP019412.1\|WP_000036734.1\|2868820_2870119_-\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NZ_CP019412.1\|WP_000080400.1\|2861037_2861772_-\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NZ_CP019412.1\|WP_000134246.1\|2850542_2851592_-\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
NZ_CP019412.1\|WP_000210451.1\|2872066_2872867_-\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
NZ_CP019412.1\|WP_001092259.1\|2854264_2855704_-\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
NZ_CP019412.1\|WP_001145533.1\|2859996_2860950_+\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
NZ_CP019412.1\|WP_001537530.1\|2853298_2853622_-\|DUF3561-family-protein	unknown	unknown	gnl\|CDD\|371891
NZ_CP019412.1\|WP_000741649.1\|2852067_2852778_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
NZ_CP019412.1\|WP_001173661.1\|2853672_2854278_-\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661

Protein	Function_ID	Function_description	E-value
NZ_CP019412.1\|WP_001290665.1\|2861847_2863560_-\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
NZ_CP019412.1\|WP_000108312.1\|2865794_2866157_+\|6-carboxytetrahydropterin-synthase-QueD	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	2.66978e-58
NZ_CP019412.1\|WP_000517480.1\|2852796_2853108_-\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	1.08865e-64
NZ_CP019412.1\|WP_001667037.1\|2866244_2867042_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|224158	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only].	2.4605e-101
NZ_CP019412.1\|WP_000372384.1\|2855713_2856622_-\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
NZ_CP019412.1\|WP_023212181.1\|2856872_2857919_+\|aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
NZ_CP019412.1\|WP_001199956.1\|2868013_2868685_-\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	2.27998e-154
NZ_CP019412.1\|WP_001219244.1\|2851588_2852068_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	1.27909e-104
NZ_CP019412.1\|WP_000210864.1\|2870201_2871839_-\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NZ_CP019412.1\|WP_000210909.1\|2863559_2865359_-\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
NZ_CP019412.1\|WP_001221538.1\|2849800_2850562_-\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.7078e-146
NZ_CP019412.1\|WP_000036734.1\|2868820_2870119_-\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NZ_CP019412.1\|WP_000080400.1\|2861037_2861772_-\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	2.30149e-138
NZ_CP019412.1\|WP_000134246.1\|2850542_2851592_-\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
NZ_CP019412.1\|WP_000210451.1\|2872066_2872867_-\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	3.42454e-158
NZ_CP019412.1\|WP_001092259.1\|2854264_2855704_-\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
NZ_CP019412.1\|WP_001145533.1\|2859996_2860950_+\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
NZ_CP019412.1\|WP_001537530.1\|2853298_2853622_-\|DUF3561-family-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	3.31009e-48
NZ_CP019412.1\|WP_000741649.1\|2852067_2852778_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	2.24126e-119
NZ_CP019412.1\|WP_001173661.1\|2853672_2854278_-\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	1.53293e-145

>NZ_CP019412.1|WP_023212181.1|2856872_2857919_+|aminopeptidase
MFSATRRFAVILALGVGFILPAQAASPAPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLDNLIVGDKLYFNSGKNTPEAVRTLTRDRALAIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS
>NZ_CP019412.1|WP_000372384.1|2855713_2856622_-|sulfate-adenylyltransferase-subunit-CysD
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF
>NZ_CP019412.1|WP_001092259.1|2854264_2855704_-|sulfate-adenylyltransferase-subunit-CysN
MNTILAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTLQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYREETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSANMRWYSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNLDFRGYAGTLASGSVKVGERIKVLPSGVESSVARIVTFDGDKEEAYAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMAEQPLAPGQSYDVKLAGKKTRARIEAIRYQIDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVRELDERGATPPVEYSAFELELNALVRRHFPHWDARDLLGDKHGAA
>NZ_CP019412.1|WP_001173661.1|2853672_2854278_-|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVAAREQLHGHRGVVLWFTGLSGSGKSTVAGALEEALHQRGVSTYLLDGDNVRHGLCCDLGFSDADRQENIRRVGEVASLMADAGLIVLTAFISPHRAERQLVKERVGHDRFIEIYVNTPLAICEQRDPKGLYKKARAGELRNFTGIDAIYEAPDSPQVHLNGEQLVTNLVSQLLDLLRRRDIIRS
>NZ_CP019412.1|WP_001537530.1|2853298_2853622_-|DUF3561-family-protein
MRNSHNITFTRSDAFMVDDDATSAFPGAVVGFVSWLLALGIPFLLYGPNTLFFFLYTWPFFLALMPVSVIIGIALHLLVKGKILFSIMFTLLAVGALFGALFIWLLG
>NZ_CP019412.1|WP_000517480.1|2852796_2853108_-|cell-division-protein-FtsB
MGKLTLLLLALLVWLQYSLWFGKNGIHDYSRVNDDVVAQQATNAKLKARNDQLFAEIDDLNGGQEAIEERARNELSMTKPGETFYRLVPDASKRAATAGQTHR
>NZ_CP019412.1|WP_000741649.1|2852067_2852778_-|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MAATLLDVCAVVPAAGFGRRMQTECPKQYLSIGNKTILEHSVHALLAHPRVTRVVIAISPGDHRFAQLPLANHPQITVVDGGNERADSVLAGLQAVAKAQWVLVHDAARPCLHQDDLARLLAISENSRVGGILASPVRDTMKRGEPGKNAIAHTVERADLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPALVEGRADNIKVTRPEDLALAEFYLTRTIHQEKA
>NZ_CP019412.1|WP_001219244.1|2851588_2852068_-|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLMKAAK
>NZ_CP019412.1|WP_000134246.1|2850542_2851592_-|tRNA-pseudouridine(13)-synthase-TruD
MTEFDNLTWLHGKPQGSGLLKANPEDFVVVEDLGFTPDGEGEHILLRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDFSAFQLEGCKVLEYARHKRKLRLGALKGNAFTLVLREISDRRDVETRLQAIRDGGVPNYFGAQRFGIGGSNLQGALRWAQSNAPVRDRNKRSFWLSAARSALFNQIVHQRLKKPDFNQVVDGDALQLAGRGSWFVATSEELPELQRRVDEKELMITASLPGSGEWGTQRAALAFEQDAIAQETVLQSLLLREKVEASRRAMLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVVRELINTMGDYAHIAE
>NZ_CP019412.1|WP_001221538.1|2849800_2850562_-|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLNGYQHYDTAAAVTCALLRGLSREPLRTGRILNVNVPDLPLAQVKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVDEGYVSVTPLHVDLTAHSAHDVVSDWLDSVGVGTQW
>NZ_CP019412.1|WP_001145533.1|2859996_2860950_+|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKLDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGAKMTWHPELLQESISTLRKEVTGNAQIKATVYEMMRPAEAPDHPLVEWQDSLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFAEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKIYLTHERSLHIGKDGCSRNILLT
>NZ_CP019412.1|WP_000080400.1|2861037_2861772_-|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVLALAETNVQLETLTAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>NZ_CP019412.1|WP_001290665.1|2861847_2863560_-|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGLETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDNNWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQKVKIETLARDHGLMNAVSAQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGNRIGTRIPRMYQENITEPDILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>NZ_CP019412.1|WP_000210909.1|2863559_2865359_-|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit
MTTPAPLTGLLPLNPEQLARLQAATTDLTPEQLAWVSGYFWGVLNPRSGAVAVTPAPEGKMPGVTLISASQTGNARRVAEALRDDLLAANLNVTLVNAGDYKFKQIASEKLLVIVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDVLKSRAPVAAPSQSVATGAVNDIHTSPYTKDAPLTATLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVDGKTLPLAEALEWHFELTVNTANIVENYATLTRSESLLPLVGDKAQLQHYAATTPIVDMVRFSPAQLDAEALIGLLRPLTPRLYSIASAQAEVESEVHVTVGVVRYDIEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAADGAEGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLNRIDLAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDARRMAADVEKALLEVIAEFGAMDIEAADEFLSELRVERRYQRDVY
>NZ_CP019412.1|WP_000108312.1|2865794_2866157_+|6-carboxytetrahydropterin-synthase-QueD
MSTTLYKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFADLKAAFKPTYDRLDHYYLNDIPGLSNPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCIYRGE
>NZ_CP019412.1|WP_001667037.1|2866244_2867042_-|MBL-fold-metallo-hydrolase
MALRIRVLLENHKGAGADKSLKARPGLSLLVEDESTSILFDTGPDGSFMQNALAMGIDLSDVSAVVLSHGHYDHCGGVPWLPDNSRIICHPDIARERYAAMTFLGITRKIKKLSCEVDYSRYRMMYTRGPLPIGENFIWSGEIPVVAPEAYGIFGGHDAEPDSILDEGVLIYQSAKGLVIITGCGHRGIANIVRHCQNITGIKRIYALVGGFHLRCASPFTMWRVRRFLQEHKPEKLCGCHCTGAWGRLWLPEITAPATGDVLRF
>NZ_CP019412.1|WP_001199956.1|2868013_2868685_-|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILAKTKESDKWGAASSEDLLAVINRQDYTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA
>NZ_CP019412.1|WP_000036734.1|2868820_2870119_-|phosphopyruvate-hydratase
MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVGAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTENKSNFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKGKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>NZ_CP019412.1|WP_000210864.1|2870201_2871839_-|CTP-synthase-(glutamine-hydrolyzing)
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQLAVDIGREHALFMHLTLVPYLAAAGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISMKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIYEEANPAGEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVTVNIKLIDSQDVETRGVEILKDLDAILIPGGFGYRGVEGKIATARYARENNIPYLGICLGMQVALIEFARNVAGMDNANSTEFVPDCKYPVVALITEWRDEDGNVEVRSEKSDLGGTMRLGAQQCQLSDDSLVRQLYGASTIVERHRHRYEVNNMLLKQIEAAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAASEHQKRQAK
>NZ_CP019412.1|WP_000210451.1|2872066_2872867_-|nucleoside-triphosphate-pyrophosphohydrolase
MTTNHQIDRLLTLMQRLRDPENGCPWDKEQTFASIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFGELSADNSEEALVRWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCSNVGFDWTTLGPVVDKVYEEIDEVMFEARQAVVDQAKLEEEMGDLLFATVNMARHLGTKAELALQKANDKFERRFREVERIVAARGLEMTGVDLETMEEVWQEVKRQEIDL

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Crispr_ID: NZ_CP019412_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP019412_2

2867140-2867717

Orphan

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRISPRCasFinder
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	PILER-CR

9 spacers

The CRISPR arrays of NZ_CP019412_2

>merge|NZ_CP019412|2|2867140-2867717|CRISPRCasFinder,CRT,PILER-CR
ACGGCTATCCTTGTTGGCGCGGGGAACACGTTACCGTTGGCGTAACGCTGAATTGTTGGTACGGTTTATCCCCGCTGACGCGGGTAACACACGGCAACGGATGCGACCGCCAACGCGATCCCCGGTTTATCCCCGCTGGCGCGGCGAACACCTGAGAGGAACCAGGGAAAGATGTTTTGGGATCGGTTTATCCCCGCTGGCGCGGGGAACACTGCCTGAAACTTTCCATGAACTGGCTGTAACGCGGTTTATCCCCGCTGGCGCGGGAAACACAATTATTCCCTCCCATGCACCCTGTTCTCACCCGGTTTATCCCCGCTGGCGCGGGGAACACCCCTTCGCTCTCGATCCAGTGCTGCGCATGAGCGGTTTATCCCCGCTGGCGCGGGGAACACCCAATTCAATCCCTTGTTGACCTTAGTAAATCCGGTTTATCCCCGCTGGCGCGGGGAACACTCACGCATCGCCTGTTGCGCGCCCTCATACGCCGGTTTATCCCCGCTGGCGCGGGGAACACGGGGCTTGATTGCCTAAACAAACTTTTCTGGGCGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP019412|2|2|2867140-2867717|CRISPRCasFinder
ACGGCTATCCTTGTTGGCGCGGGGAACAC	GTTACCGTTGGCGTAACGCTGAATTGTTGGTA
CGGTTTATCCCCGCTGACGCGGGTAACAC	ACGGCAACGGATGCGACCGCCAACGCGATCCC
CGGTTTATCCCCGCTGGCGCGGCGAACAC	CTGAGAGGAACCAGGGAAAGATGTTTTGGGAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGCCTGAAACTTTCCATGAACTGGCTGTAACG
CGGTTTATCCCCGCTGGCGCGGGAAACAC	AATTATTCCCTCCCATGCACCCTGTTCTCACC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCCTTCGCTCTCGATCCAGTGCTGCGCATGAG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCAATTCAATCCCTTGTTGACCTTAGTAAATC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCACGCATCGCCTGTTGCGCGCCCTCATACGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGGGCTTGATTGCCTAAACAAACTTTTCTGGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP019412|2|1|2867140-2867717|CRT
ACGGCTATCCTTGTTGGCGCGGGGAACAC	GTTACCGTTGGCGTAACGCTGAATTGTTGGTA
CGGTTTATCCCCGCTGACGCGGGTAACAC	ACGGCAACGGATGCGACCGCCAACGCGATCCC
CGGTTTATCCCCGCTGGCGCGGCGAACAC	CTGAGAGGAACCAGGGAAAGATGTTTTGGGAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGCCTGAAACTTTCCATGAACTGGCTGTAACG
CGGTTTATCCCCGCTGGCGCGGGAAACAC	AATTATTCCCTCCCATGCACCCTGTTCTCACC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCCTTCGCTCTCGATCCAGTGCTGCGCATGAG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCAATTCAATCCCTTGTTGACCTTAGTAAATC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCACGCATCGCCTGTTGCGCGCCCTCATACGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGGGCTTGATTGCCTAAACAAACTTTTCTGGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP019412|2|1|2867262-2867717|PILER-CR
CGGTTTATCCCCGCTGGCGCGGCGAACAC	CTGAGAGGAACCAGGGAAAGATGTTTTGGGAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGCCTGAAACTTTCCATGAACTGGCTGTAACG
CGGTTTATCCCCGCTGGCGCGGGAAACAC	AATTATTCCCTCCCATGCACCCTGTTCTCACC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCCTTCGCTCTCGATCCAGTGCTGCGCATGAG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCAATTCAATCCCTTGTTGACCTTAGTAAATC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCACGCATCGCCTGTTGCGCGCCCTCATACGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGGGCTTGATTGCCTAAACAAACTTTTCTGGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019412.1\|WP_000108312.1\|2865794_2866157_+\|6-carboxytetrahydropterin-synthase-QueD	unknown	unknown	gnl\|CDD\|238264
NZ_CP019412.1\|WP_001290665.1\|2861847_2863560_-\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
NZ_CP019412.1\|WP_072196359.1\|2873882_2874239_-\|type-II-toxin-antitoxin-system-ParD-family-antitoxin	unknown	unknown	gnl\|CDD\|226136
NZ_CP019412.1\|WP_000210451.1\|2872066_2872867_-\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
NZ_CP019412.1\|WP_000372384.1\|2855713_2856622_-\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375
NZ_CP019412.1\|WP_023212181.1\|2856872_2857919_+\|aminopeptidase	unknown	unknown	gnl\|CDD\|182299
NZ_CP019412.1\|WP_023212186.1\|2876609_2877905_-\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|237291
NZ_CP019412.1\|WP_001199956.1\|2868013_2868685_-\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
NZ_CP019412.1\|WP_000186400.1\|2877962_2880719_+\|two-component-sensor-histidine-kinase-BarA	unknown	unknown	gnl\|CDD\|236848
NZ_CP019412.1\|WP_000210864.1\|2870201_2871839_-\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437
NZ_CP019412.1\|WP_000210909.1\|2863559_2865359_-\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|182862
NZ_CP019412.1\|WP_023212185.1\|2874323_2876558_-\|GTP-diphosphokinase	unknown	unknown	gnl\|CDD\|182797
NZ_CP019412.1\|WP_000036734.1\|2868820_2870119_-\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NZ_CP019412.1\|WP_000080400.1\|2861037_2861772_-\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NZ_CP019412.1\|WP_000706486.1\|2880762_2881905_-\|glycerate-kinase	unknown	unknown	gnl\|CDD\|224840
NZ_CP019412.1\|WP_001092259.1\|2854264_2855704_-\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
NZ_CP019412.1\|WP_001667037.1\|2866244_2867042_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|224158
NZ_CP019412.1\|WP_001145533.1\|2859996_2860950_+\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
NZ_CP019412.1\|WP_000107113.1\|2881982_2883323_-\|glucarate-dehydratase	unknown	unknown	gnl\|CDD\|211799
NZ_CP019412.1\|WP_001173661.1\|2853672_2854278_-\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661

Protein	Function_ID	Function_description	E-value
NZ_CP019412.1\|WP_000108312.1\|2865794_2866157_+\|6-carboxytetrahydropterin-synthase-QueD	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	2.66978e-58
NZ_CP019412.1\|WP_001290665.1\|2861847_2863560_-\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
NZ_CP019412.1\|WP_072196359.1\|2873882_2874239_-\|type-II-toxin-antitoxin-system-ParD-family-antitoxin	gnl\|CDD\|226136	COG3609, COG3609, Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain [Transcription].	1.09987e-19
NZ_CP019412.1\|WP_000210451.1\|2872066_2872867_-\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	3.42454e-158
NZ_CP019412.1\|WP_000372384.1\|2855713_2856622_-\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
NZ_CP019412.1\|WP_023212181.1\|2856872_2857919_+\|aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
NZ_CP019412.1\|WP_023212186.1\|2876609_2877905_-\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|237291	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD.	0
NZ_CP019412.1\|WP_001199956.1\|2868013_2868685_-\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	2.27998e-154
NZ_CP019412.1\|WP_000186400.1\|2877962_2880719_+\|two-component-sensor-histidine-kinase-BarA	gnl\|CDD\|236848	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional.	0
NZ_CP019412.1\|WP_000210864.1\|2870201_2871839_-\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NZ_CP019412.1\|WP_000210909.1\|2863559_2865359_-\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
NZ_CP019412.1\|WP_023212185.1\|2874323_2876558_-\|GTP-diphosphokinase	gnl\|CDD\|182797	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional.	0
NZ_CP019412.1\|WP_000036734.1\|2868820_2870119_-\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NZ_CP019412.1\|WP_000080400.1\|2861037_2861772_-\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	2.30149e-138
NZ_CP019412.1\|WP_000706486.1\|2880762_2881905_-\|glycerate-kinase	gnl\|CDD\|224840	COG1929, COG1929, Glycerate kinase [Carbohydrate transport and metabolism].	0
NZ_CP019412.1\|WP_001092259.1\|2854264_2855704_-\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
NZ_CP019412.1\|WP_001667037.1\|2866244_2867042_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|224158	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only].	2.4605e-101
NZ_CP019412.1\|WP_001145533.1\|2859996_2860950_+\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
NZ_CP019412.1\|WP_000107113.1\|2881982_2883323_-\|glucarate-dehydratase	gnl\|CDD\|211799	TIGR03247, glucar-dehydr, glucarate dehydratase. Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (GenProp0716). The E. coli enzyme has been well-characterized.	0
NZ_CP019412.1\|WP_001173661.1\|2853672_2854278_-\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	1.53293e-145

>NZ_CP019412.1|WP_001667037.1|2866244_2867042_-|MBL-fold-metallo-hydrolase
MALRIRVLLENHKGAGADKSLKARPGLSLLVEDESTSILFDTGPDGSFMQNALAMGIDLSDVSAVVLSHGHYDHCGGVPWLPDNSRIICHPDIARERYAAMTFLGITRKIKKLSCEVDYSRYRMMYTRGPLPIGENFIWSGEIPVVAPEAYGIFGGHDAEPDSILDEGVLIYQSAKGLVIITGCGHRGIANIVRHCQNITGIKRIYALVGGFHLRCASPFTMWRVRRFLQEHKPEKLCGCHCTGAWGRLWLPEITAPATGDVLRF
>NZ_CP019412.1|WP_000108312.1|2865794_2866157_+|6-carboxytetrahydropterin-synthase-QueD
MSTTLYKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFADLKAAFKPTYDRLDHYYLNDIPGLSNPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCIYRGE
>NZ_CP019412.1|WP_000210909.1|2863559_2865359_-|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit
MTTPAPLTGLLPLNPEQLARLQAATTDLTPEQLAWVSGYFWGVLNPRSGAVAVTPAPEGKMPGVTLISASQTGNARRVAEALRDDLLAANLNVTLVNAGDYKFKQIASEKLLVIVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDVLKSRAPVAAPSQSVATGAVNDIHTSPYTKDAPLTATLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVDGKTLPLAEALEWHFELTVNTANIVENYATLTRSESLLPLVGDKAQLQHYAATTPIVDMVRFSPAQLDAEALIGLLRPLTPRLYSIASAQAEVESEVHVTVGVVRYDIEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAADGAEGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLNRIDLAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDARRMAADVEKALLEVIAEFGAMDIEAADEFLSELRVERRYQRDVY
>NZ_CP019412.1|WP_001290665.1|2861847_2863560_-|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGLETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDNNWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQKVKIETLARDHGLMNAVSAQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGNRIGTRIPRMYQENITEPDILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>NZ_CP019412.1|WP_000080400.1|2861037_2861772_-|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVLALAETNVQLETLTAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>NZ_CP019412.1|WP_001145533.1|2859996_2860950_+|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKLDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGAKMTWHPELLQESISTLRKEVTGNAQIKATVYEMMRPAEAPDHPLVEWQDSLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFAEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKIYLTHERSLHIGKDGCSRNILLT
>NZ_CP019412.1|WP_023212181.1|2856872_2857919_+|aminopeptidase
MFSATRRFAVILALGVGFILPAQAASPAPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLDNLIVGDKLYFNSGKNTPEAVRTLTRDRALAIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS
>NZ_CP019412.1|WP_000372384.1|2855713_2856622_-|sulfate-adenylyltransferase-subunit-CysD
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF
>NZ_CP019412.1|WP_001092259.1|2854264_2855704_-|sulfate-adenylyltransferase-subunit-CysN
MNTILAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTLQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYREETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSANMRWYSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNLDFRGYAGTLASGSVKVGERIKVLPSGVESSVARIVTFDGDKEEAYAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMAEQPLAPGQSYDVKLAGKKTRARIEAIRYQIDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVRELDERGATPPVEYSAFELELNALVRRHFPHWDARDLLGDKHGAA
>NZ_CP019412.1|WP_001173661.1|2853672_2854278_-|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVAAREQLHGHRGVVLWFTGLSGSGKSTVAGALEEALHQRGVSTYLLDGDNVRHGLCCDLGFSDADRQENIRRVGEVASLMADAGLIVLTAFISPHRAERQLVKERVGHDRFIEIYVNTPLAICEQRDPKGLYKKARAGELRNFTGIDAIYEAPDSPQVHLNGEQLVTNLVSQLLDLLRRRDIIRS
>NZ_CP019412.1|WP_001199956.1|2868013_2868685_-|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILAKTKESDKWGAASSEDLLAVINRQDYTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA
>NZ_CP019412.1|WP_000036734.1|2868820_2870119_-|phosphopyruvate-hydratase
MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVGAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTENKSNFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKGKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>NZ_CP019412.1|WP_000210864.1|2870201_2871839_-|CTP-synthase-(glutamine-hydrolyzing)
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQLAVDIGREHALFMHLTLVPYLAAAGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISMKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIYEEANPAGEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVTVNIKLIDSQDVETRGVEILKDLDAILIPGGFGYRGVEGKIATARYARENNIPYLGICLGMQVALIEFARNVAGMDNANSTEFVPDCKYPVVALITEWRDEDGNVEVRSEKSDLGGTMRLGAQQCQLSDDSLVRQLYGASTIVERHRHRYEVNNMLLKQIEAAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAASEHQKRQAK
>NZ_CP019412.1|WP_000210451.1|2872066_2872867_-|nucleoside-triphosphate-pyrophosphohydrolase
MTTNHQIDRLLTLMQRLRDPENGCPWDKEQTFASIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFGELSADNSEEALVRWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCSNVGFDWTTLGPVVDKVYEEIDEVMFEARQAVVDQAKLEEEMGDLLFATVNMARHLGTKAELALQKANDKFERRFREVERIVAARGLEMTGVDLETMEEVWQEVKRQEIDL
>NZ_CP019412.1|WP_072196359.1|2873882_2874239_-|type-II-toxin-antitoxin-system-ParD-family-antitoxin
MFLTYISFPVYSYVRFILTVEAVMARTMTVDLGDELREFIESLIESGDYRTQSEVIRESLRLLREKQAESRLLALRELLAEGLNSGEPQAWEKDAFLRKVKTGMIKPDENGKINAKGQ
>NZ_CP019412.1|WP_023212185.1|2874323_2876558_-|GTP-diphosphokinase
MVAVRSAHINKAGEFDPKKWVASLGISSQQSCERLAETWAYCLQQTQGHPDADLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSIVTLIHGVRDMAAIRQLNATHNDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKEAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPAEYKRIAKLLHERRLDREHYIEEFVGHLRAEMKNEGVQAEVYGRPKHIYSIWRKMQKKHLAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAHWKYKEGAASGGVRSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQVEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNILAGRQILDDELAHLGISLKEAEKHLLPRYNFNELEELLAAIGGGDIRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKTYAPQNRRKDDGRVVVEGVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPERIVEAVWGESYSAGYSLVVRVQANDRSGLLRDITTILANEKVNVLGVASRSDIKQQIATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLHGG
>NZ_CP019412.1|WP_023212186.1|2876609_2877905_-|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MAQFYSAKRRVTTRQIITVKVNDLDSFGQGVARHNGKALFIPGLLPEESAEVIITEDKKQFARARVSRRLNDSPERETPRCPHFGVCGGCQQQHVSIALQQRSKSAALARLMKHEVNDIIAGAPWGYRRRARLSLNCPPDKPLQMGFRKAGSSDIVNVEQCPVLVPQLAALLPRIRACLASLHGTRHLGHVELVQAGSGTLMILRHTAPLSAADKEKLERFSHSEGLSLFLAPFSEILETVSGEAPWYDSHGLRLAFSPRDFIQVNEAVNQQMVARALEWLDVRAEDRVLDLFCGMGNFTLPLATRAASVIGVEGVPALVEKGRENAIRNGLHNVTFFHENLEEDVTKQPWAKNGFDKVLLDPARAGATGVMRHIIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLESMVLFERM
>NZ_CP019412.1|WP_000186400.1|2877962_2880719_+|two-component-sensor-histidine-kinase-BarA
MTNYSLRARMMILILAPTVLIGLLLSIFFVVHRYNDLQRQLEDAGASIIEPLAVSSEYGMNLQNRESIGQLISVLHRRHSDIVRAISVYDDHNRLFVTSNFHLDPSQMQLPAGAPFPRRLSVDRHGDIMILRTPIISESYSPDESAIADAKNTKNMLGYVALELDLKSVRLQQYKEIFISSVMMLFCIGIALIFGWRLMRDVTGPIRNMVNTVDRIRRGQLDSRVEGFMLGELDMLKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNVIGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNVIIDGPSTACLAGKRLAYVEPNATAAQCTLDLLSDTPVEVVYSPTFSALPLAHYDIMILSVPVTFREPLTMQHERLAKAASMTDFLLLALPCHAQINAEKLKQGGAAACLLKPLTSTRLLPALTEYCQLNHHPEPLLMDTSKITMTVMAVDDNPANLKLIGALLEDKVQHVELCDSGHQAVDRAKQMQFDLILMDIQMPDMDGIRACELIHQLPHQQQTPVIAVTAHAMAGQKEKLLSAGMNDYLAKPIEEEKLHNLLLRYKPGANVAARLMAPEPAEFIFNPNATLDWQLALRQAAGKPDLARDMLQMLIDFLPEVRNKIEEQLVGENPNGLVDLVHKLHGSCGYSGVPRMKNLCQLIEQQLRSGVHEEELEPEFLELLDEMDNVAREAKKILG
>NZ_CP019412.1|WP_000706486.1|2880762_2881905_-|glycerate-kinase
MKIVIAPDSYKESLSALEVATAIEQGFREIWPDADYLKLPLADGGEGTVEAMVEATAGRIVHVEVTGPLGHRVNAFYGLSGDARSAFIEMAAASGLEQVPPAQRDPLKTTSWGTGELIRHALDAGVEHIIIGIGGSATNDGGAGMVQALGARLRDAQGNDIVQGGIGLETLASIDISGLDKRLSACHIEVACDVTNPLTGKEGASAVFGPQKGATPEMIERLDTALTRYAHLIARDLHVDVLDLAGGGAAGGMGAALYAFCGAQLRRGIEIVTDALHLEACLADADLVITGEGRIDSQTIHGKVPIGVANIAKRYNKPVIGIAGSLTADVGVVHEHGLDAVFSVIYTICTLEDALKNASENVRMTARNVAATLKAGQQLR
>NZ_CP019412.1|WP_000107113.1|2881982_2883323_-|glucarate-dehydratase
MSTQFTTPVVTEMQVIPVAGHDSMLMNLSGAHAPFFTRNIVIIKDNSGHTGVGEIPGGEKIRKTLEDAIPLVVGKTLGEYKNVLTAVRNQFADRDAGGRGLQTFDLRTTIHVVTGIEAAMLDLLGQHLGVNVASLLGDGQQRSEVEMLGYLFFVGNRKATPLPYQSQPDEQCDWYRLRHEEAMTPETVVRLAEAAYEKYGFNDFKLKGGVLAGEEEAESIVALAKRFPQARVTLDPNGAWSLNEAISIGKYLKGSLAYAEDPCGAEQGFSGREVMAEFRRATGLPTATNMIATDWRQMGHTLSLQSVDIPLADPHFWTMQGSVRVAQMCHEFGLTWGSHSNNHFDISLAMFTHVAAAAPGKITAIDTHWIWQEGNQRLTKEPFEIKGGMVQVPTKPGLGVELDMDQVMKAHELYQKHGLGARDDAMGMQYLIPGWTFDNKRPCMVR

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Crispr_ID: NZ_CP019412_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP019412_3

3624663-3624741

Orphan

Consensus_repeat	Method
CATTACCACCAGGCTGATATCAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP019412_3

>merge|NZ_CP019412|3|3624663-3624741|CRISPRCasFinder
CATTACCACCAGGCTGATATCAATACGGTAGGCCCTATAAGCGAAGTGCCATCGGGCATTACCACCAGGCTAATATCAA

>NZ_CP019412|3|3|3624663-3624741|CRISPRCasFinder
CATTACCACCAGGCTGATATCAA	TACGGTAGGCCCTATAAGCGAAGTGCCATCGGG
CATTACCACCAGGCTAATATCAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019412.1\|WP_000193201.1\|3636488_3637079_+\|MltR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|236817
NZ_CP019412.1\|WP_000766331.1\|3616688_3617675_+\|TRAP-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270397
NZ_CP019412.1\|WP_001062558.1\|3637088_3637298_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019412.1\|WP_000891812.1\|3621524_3622340_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|227095
NZ_CP019412.1\|WP_000645385.1\|3635343_3636492_+\|mannitol-1-phosphate-5-dehydrogenase	unknown	unknown	gnl\|CDD\|235031
NZ_CP019412.1\|WP_023212606.1\|3627448_3628600_-\|L-threonine-dehydrogenase	unknown	unknown	gnl\|CDD\|182118
NZ_CP019412.1\|WP_000089520.1\|3619171_3619822_+\|3-keto-L-gulonate-6-phosphate-decarboxylase-UlaD	unknown	unknown	gnl\|CDD\|183962
NZ_CP019412.1\|WP_000074063.1\|3617678_3619175_+\|carbohydrate-kinase	unknown	unknown	gnl\|CDD\|212666
NZ_CP019412.1\|WP_000582383.1\|3628785_3630636_-\|selenocysteine-specific-translation-elongation-factor	unknown	unknown	gnl\|CDD\|182508
NZ_CP019412.1\|WP_000183988.1\|3624788_3626327_-\|aldehyde-dehydrogenase-AldB	unknown	unknown	gnl\|CDD\|143434
NZ_CP019412.1\|WP_000832313.1\|3614923_3615397_+\|2,3-diketo-L-gulonate-TRAP-transporter-small-permease-YiaM	unknown	unknown	gnl\|CDD\|182129
NZ_CP019412.1\|WP_023137414.1\|3620680_3621376_+\|L-ribulose-5-phosphate-4-epimerase	unknown	unknown	gnl\|CDD\|183459
NZ_CP019412.1\|WP_023212607.1\|3630632_3632024_-\|L-seryl-tRNA(Sec)-selenium-transferase	unknown	unknown	gnl\|CDD\|235278
NZ_CP019412.1\|WP_001244036.1\|3619826_3620687_+\|L-ribulose-5-phosphate-3-epimerase	unknown	unknown	gnl\|CDD\|237308
NZ_CP019412.1\|WP_023212608.1\|3633206_3635123_+\|PTS-mannitol-transporter-subunit-IICBA	unknown	unknown	gnl\|CDD\|237905
NZ_CP019412.1\|WP_001188271.1\|3626495_3627377_+\|ROK-family-protein	unknown	unknown	gnl\|CDD\|224851
NZ_CP019412.1\|WP_000301820.1\|3615399_3616677_+\|2,3-diketo-L-gulonate-transporter-large-permease-YiaN	unknown	unknown	gnl\|CDD\|185020
NZ_CP019412.1\|WP_000766675.1\|3632122_3632731_-\|glutathione-S-transferase	unknown	unknown	gnl\|CDD\|182405
NZ_CP019412.1\|WP_023137415.1\|3622603_3624559_+\|glycoside-hydrolase-family-127-protein	unknown	unknown	gnl\|CDD\|226063
NZ_CP019412.1\|WP_023212605.1\|3613852_3614785_+\|DUF4862-family-protein	unknown	unknown	gnl\|CDD\|374399

Protein	Function_ID	Function_description	E-value
NZ_CP019412.1\|WP_000193201.1\|3636488_3637079_+\|MltR-family-transcriptional-regulator	gnl\|CDD\|236817	PRK11001, mtlR, MltR family transcriptional regulator.	1.37879e-106
NZ_CP019412.1\|WP_000766331.1\|3616688_3617675_+\|TRAP-transporter-substrate-binding-protein	gnl\|CDD\|270397	cd13679, PBP2_TRAP_YiaO_like, Substrate-binding domain of 2,3-diketo-L-gulonate-binding Tripartite ATP-independent Periplasmic transport system and related proteins; the type 2 periplasmic-binding protein fold. This subfamily includes the solute receptor protein YiaO of TRAP transport system. TRAP transporters are a large family of solute transporters ubiquitously found in bacteria and archaea. They are comprised of a periplasmic substrate-binding protein (SBP) and two unequally sized integral membrane components: a large transmembrane subunit involved in the translocation process and a smaller membrane of unknown function. The driving force of TRAP transporters is provided by electrochemical ion gradients (either protons or sodium ions) across the cytoplasmic membrane, rather than ATP hydrolysis. This substrate-binding domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	3.88867e-149
NZ_CP019412.1\|WP_000891812.1\|3621524_3622340_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|227095	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms].	1.11433e-21
NZ_CP019412.1\|WP_000645385.1\|3635343_3636492_+\|mannitol-1-phosphate-5-dehydrogenase	gnl\|CDD\|235031	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional.	0
NZ_CP019412.1\|WP_023212606.1\|3627448_3628600_-\|L-threonine-dehydrogenase	gnl\|CDD\|182118	PRK09860, PRK09860, putative alcohol dehydrogenase; Provisional.	0
NZ_CP019412.1\|WP_000089520.1\|3619171_3619822_+\|3-keto-L-gulonate-6-phosphate-decarboxylase-UlaD	gnl\|CDD\|183962	PRK13305, sgbH, 3-keto-L-gulonate-6-phosphate decarboxylase UlaD.	4.61819e-146
NZ_CP019412.1\|WP_000074063.1\|3617678_3619175_+\|carbohydrate-kinase	gnl\|CDD\|212666	cd07802, FGGY_L-XK, L-xylulose kinases; a subfamily of the FGGY family of carbohydrate kinases. This subfamily is composed of bacterial L-xylulose kinases (L-XK, also known as L-xylulokinase; EC 2.7.1.53), which catalyze the ATP-dependent phosphorylation of L-xylulose to produce L-xylulose 5-phosphate and ADP. The presence of Mg2+ might be required for catalytic activity. Some uncharacterized sequences are also included in this subfamily. L-XKs belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain.	0
NZ_CP019412.1\|WP_000582383.1\|3628785_3630636_-\|selenocysteine-specific-translation-elongation-factor	gnl\|CDD\|182508	PRK10512, PRK10512, selenocysteinyl-tRNA-specific translation factor; Provisional.	0
NZ_CP019412.1\|WP_000183988.1\|3624788_3626327_-\|aldehyde-dehydrogenase-AldB	gnl\|CDD\|143434	cd07116, ALDH_ACDHII-AcoD, Ralstonia eutrophus NAD+-dependent acetaldehyde dehydrogenase II-like. Included in this CD is the NAD+-dependent, acetaldehyde dehydrogenase II (AcDHII, AcoD, EC=1.2.1.3) from Ralstonia (Alcaligenes) eutrophus H16 involved in the catabolism of acetoin and ethanol, and similar proteins, such as, the dimeric dihydrolipoamide dehydrogenase of the acetoin dehydrogenase enzyme system of Klebsiella pneumonia. Also included are sequences similar to the NAD+-dependent chloroacetaldehyde dehydrogenases (AldA and AldB) of Xanthobacter autotrophicus GJ10 which are involved in the degradation of 1,2-dichloroethane. These proteins apparently require RpoN factors for expression.	0
NZ_CP019412.1\|WP_000832313.1\|3614923_3615397_+\|2,3-diketo-L-gulonate-TRAP-transporter-small-permease-YiaM	gnl\|CDD\|182129	PRK09877, PRK09877, 2,3-diketo-L-gulonate TRAP transporter small permease protein YiaM; Provisional.	1.23224e-98
NZ_CP019412.1\|WP_023137414.1\|3620680_3621376_+\|L-ribulose-5-phosphate-4-epimerase	gnl\|CDD\|183459	PRK12347, sgbE, L-ribulose-5-phosphate 4-epimerase; Reviewed.	6.13201e-177
NZ_CP019412.1\|WP_023212607.1\|3630632_3632024_-\|L-seryl-tRNA(Sec)-selenium-transferase	gnl\|CDD\|235278	PRK04311, PRK04311, selenocysteine synthase; Provisional.	0
NZ_CP019412.1\|WP_001244036.1\|3619826_3620687_+\|L-ribulose-5-phosphate-3-epimerase	gnl\|CDD\|237308	PRK13210, PRK13210, L-ribulose-5-phosphate 3-epimerase.	0
NZ_CP019412.1\|WP_023212608.1\|3633206_3635123_+\|PTS-mannitol-transporter-subunit-IICBA	gnl\|CDD\|237905	PRK15083, PRK15083, PTS system mannitol-specific transporter subunit IICBA; Provisional.	0
NZ_CP019412.1\|WP_001188271.1\|3626495_3627377_+\|ROK-family-protein	gnl\|CDD\|224851	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism].	2.99633e-77
NZ_CP019412.1\|WP_000301820.1\|3615399_3616677_+\|2,3-diketo-L-gulonate-transporter-large-permease-YiaN	gnl\|CDD\|185020	PRK15060, PRK15060, 2,3-diketo-L-gulonate transporter large permease YiaN.	0
NZ_CP019412.1\|WP_000766675.1\|3632122_3632731_-\|glutathione-S-transferase	gnl\|CDD\|182405	PRK10357, PRK10357, putative glutathione S-transferase; Provisional.	2.71219e-154
NZ_CP019412.1\|WP_023137415.1\|3622603_3624559_+\|glycoside-hydrolase-family-127-protein	gnl\|CDD\|226063	COG3533, COG3533, Uncharacterized protein conserved in bacteria [Function unknown].	0
NZ_CP019412.1\|WP_023212605.1\|3613852_3614785_+\|DUF4862-family-protein	gnl\|CDD\|374399	pfam16154, DUF4862, Domain of unknown function (DUF4862). This family consists of uncharacterized proteins around 300 residues in length and is mainly found in various high GC Gram+ bacteria, but also in several pathogenic and non-pathogenic enterobacteria (Salmonella, E. coli). Distant homology analysis suggests this could be a branch of Xylose isomerase-like TIM barrel family, but this prediction is currently not confirmed by experiment.	1.87715e-118

>NZ_CP019412.1|WP_023137415.1|3622603_3624559_+|glycoside-hydrolase-family-127-protein
MNVLEVDLHKLTVSDPFLGQYQQLVRDVVIPYQWDALNDRIPEAEPSHAIENFRIAAGQQTGDFYGMVFQDSDVAKWLEAVAWSLCQKPDPALEKTADEVIELVAAAQCDDGYLNTYFTAKAPQERWSNLAECHELYCAGHLIEAGVAFFQATGKRRLLDVVCRLADHIDSTFGPGENQLHGYPGHPEIELALMRLYEVTEQPRYMTLASYFIGQRGAQPHFYDEEYEKRGQTSYWHTYGPAWMVKDKAYSQAHLPISQQQTAIGHAVRFVYLMTGVAHLARLSNDEGKRQDCLRLWKNMAQRQLYITGGIGSQSSGEAFSCDYDLPNDSVYAESCASIGLMMFARRMLEMEADSQYADVMERALYNTVLGGMALDGKHFFYVNPLEVHPKSLKFNHIYDHVKPIRQRWFGCACCPPNIARVLTSLGHYIYTPRADALYINMYVGNSMEIPVENGALKLRIGGNYPWHEQVKIAIDSVQPVRHTLALRLPDWCPEAKVTLNGLEVEQDIRKGYLHIRRTWQEGDTITLTLPMPVRRVYGNPLARHVAGKVAIQRGPLVYCLEQADNGEELHNLWLPKESEFRVFEGKGLFAHKMLIQAEGEKQSAPDAQHQALWHYDNAPSSRQPQTLTFIPWFSWANRGEGEMRIWVNER
>NZ_CP019412.1|WP_000891812.1|3621524_3622340_-|helix-turn-helix-domain-containing-protein
MLELSITLPIKVQNGGLFISRGIGRHPARRLQSWEIIFVEKGCLKIQEEECVFCVEAGESLLLWPHRRHIGVEEFPTDLKFYWLHFEVKAPDSDPRWLTHLSVPQHTQVADPQALIALFRQFMNEQEKHQRSPALEFIVLLILQQLTVDARQNENAEAAGVSLAWKVQQLIRTHYHLPLSSSVLAKELHCNVDYLGRVYRRVFHLTLTEAIHRQRVREAEKLLISDARSLKEVAERCGFNDVGYFRQIFRKHTGLTPTAWKRRYSKEHVNS
>NZ_CP019412.1|WP_023137414.1|3620680_3621376_+|L-ribulose-5-phosphate-4-epimerase
MLEQLKAEVLAANLALPAHGLVTFTWGNVSAVDETRKLMVIKPSGVEYEVMTADDMVVVEIANGKIVEGNKKPSSDTATHLALYRRYPQIGGIVHTHSRHATIWSQAGLDLPAWGTTHADYFYGAIPCTRLMTVEEINGEYEYQTGEVIIKTFEERGLDPAQIPAVLVHSHGPFAWGKNAADAVHNAVVLEECAYMGLFSRQLAPQLPDMQPELLNKHYLRKHGANAYYGQ
>NZ_CP019412.1|WP_001244036.1|3619826_3620687_+|L-ribulose-5-phosphate-3-epimerase
MRNHPLGIYEKALAKDLSWPERLVLAKSCGFDFVEMSVDETDERLSRLEWTSAQRASLVNAMLESGVAIPSMCLSAHRRFPFGSRDEAVRQRAREIMTKAIRLARDLGIRTIQLAGYDVYYEEHDEGTQQRFAEGLAWAVEQAAAAQVMLAVEIMDTAFMNSISKWKKWDEMLSSPWFTVYPDVGNLSAWGNDVTAELKLGIDRIAAIHLKDTLPVTGDSPGQFRDVPFGEGCVDFVGIFKTLHELNYRGSFLIEMWTEKSSEPVLEIIQARRWIESRMQEGGFTC
>NZ_CP019412.1|WP_000089520.1|3619171_3619822_+|3-keto-L-gulonate-6-phosphate-decarboxylase-UlaD
MSRPLLQLALDHTNLEAAQRDVALLQDHVDIVEAGTILCLTEGLSAVKALRAQCPEKIIVADWKVADAGETLAQQAFSAGANWMTIICAAPLATVEKGHAVAQSCGGEIQMELFGNWTLDDARDWYRVGVRQAIYHRGRDAQASGQQWGEADLTRMKALSDIGLELSITGGITPADLPLFRDINVKAFIAGRALAGAAHPAQVAAEFHAQIDAIWG
>NZ_CP019412.1|WP_000074063.1|3617678_3619175_+|carbohydrate-kinase
MSNYWLGLDCGGSWLKAGLYDGAGREVAVQRLPLHALSPQPGWVERDMTELWQQCASVINKLLAHTGVNGSQIRGLGISAQGKGLFLLDKSDRPLGKAILSSDRRAMEIVQRWQKEAVPQKLYPLTRQTLWTGHPVSLLRWVKENEPQRYAQIGSVMMTHDYLRWCLTGVKGCEESNISESNLYNMATGQYDPRLTEWLGISEIDSALPPVVGSAEICGEITAQAAAITGLTVGTPVVGGLFDVVSTALCAGIEDESTLNAVMGTWAVTSGIAHGLRDHEAHPYVYGRYVNDGQYIVHEASPTSSGNLEWFTAQWGDLSFDEINQAVASLPKAGSDLFFLPFLYGSNAGLEMTCGFYGMQALHTRAHLLQAIYEGVVFSHMTHLNRMRERFTDVCALRVTGGPAHSDVWMQMLADVSGLRIELPQVEETGCFGAALAARVGTGVYRNFREAQRDLRHPVRTLLPDMAAHALYQRKYRQYQHLIEALQGYHARIKEHAL
>NZ_CP019412.1|WP_000766331.1|3616688_3617675_+|TRAP-transporter-substrate-binding-protein
MKLHVIARSLLIAGLTVFSVSSLAAQSLRFGYETPQTDSQHIAAKKFNELLKEKTNDELTLKLFPDSTLGNAQAMISGVRGGTIDMEMSGSNNFTGLAPVFNLLDVPFLFRDTAHAHKTLDGKVGDELKKSLDSKGLKVLAYWENGWRDVTNSRAPVKTPGDLKGLKIRTNNSPMNIAAFKIFGANPIPMPFSEVYTGLETRTIDAQEHPINVVWSAKFYEVQKYLSLTHHAYSPLLLVINKAKFDALSPQFQEALLSSAKEAGDYQRKLVAEDQQKIIDGMKEAGVEVLTDIDRKAFSDALGSQVRDMFLKDNPQGADLLKAVDEVQ
>NZ_CP019412.1|WP_000301820.1|3615399_3616677_+|2,3-diketo-L-gulonate-transporter-large-permease-YiaN
MAVVIFLCCLLGGIAIGLPIAWSLLLCGAALMAYLDMFDVQIMAQTLVNGADSFSLLAIPFFVLAGEIMNAGGLSKRIVDLPMKLVGHKPGGLGYVGVIAAMIMASLSGSAVADTAAVAALLVPMMRSANYPINRSVGLIASGGIIAPIIPPSIPFIIFGVSSGLSISKLFMAGIAPGIMMGAALMLTWWWQAGRLNLPSQPKATPREIWQSLVSGIWALFLPVIIIGGFRSGLFTPTEAGAVAAFYALFVAVVIYRELTFSSLYHVLVNAAKTTSVVMFLVAAAQVSAWLITIAELPMMVSDLLQPLVDSPRLLFIVIMISIMVVGMVMDLTPTVLILTPVLLPLVKEANIDPIYFGVMFIINCSIGLITPPVGNVLNVISGVAKLKFDDAVRGVFPYVVVLMSLLILFIFIPELIITPLKWIN
>NZ_CP019412.1|WP_000832313.1|3614923_3615397_+|2,3-diketo-L-gulonate-TRAP-transporter-small-permease-YiaM
MKRVLEGILAVLIAVLSCIVFINVILRYGFESSILSVDELSRYLFVWLTFIGAIVAFMDNAHVQVTFVVEKLSPANQRRLSLLTHSLILLLCIALGWGSLQKALQDWSDHSPILGLPIGLMYIACLPTSVAIALIELRRLYHLITRNDSFQQPQQGA
>NZ_CP019412.1|WP_023212605.1|3613852_3614785_+|DUF4862-family-protein
MKNNTGYIIGAYPCAPSFHQKSEEEETEFWRQLSDTPDIRGLEQPCLEHLHPLGDEWLLRHTPGNWQIVVTAIMETMRRRSENGGFGLASSDEEQRKACVEYYRHLYQKINKLNAKTPGKVIALELHAAPLAGNPNVAQATDAFARSLKEIANWDWSCDLVLEHCDAMTGPAPRKGFLPLVNVLETIADYDISVCINWARSAIEGRDTSLPLIHTQQAKQAGKLGALMFSGTTLDGEYGEWQDLHAPFVPFCPQSLMTEKHVKELITAAAPELLLFTGIKLLEINASADINHRINILRDGINMMKKATRS
>NZ_CP019412.1|WP_000183988.1|3624788_3626327_-|aldehyde-dehydrogenase-AldB
MTNNPPSTRIQPGEYGYPLKLKARYDNFIGGDWVAPADGEYYQNLTPVTGQPLCEVASSGKKDIDLALDAAHKAKDKWAHTSVQDRAAILFKIADRMEQNLELLATAETWDNGKPIRETSAADVPLAIDHFRYFASCIRAQEGGISEVDSETVAYHFHEPLGVVGQIIPWNFPLLMASWKMAPALAAGNCVVLKPARLTPLSVLLLMEVIGDLLPPGVVNVVNGAGGEIGEYLATSKRIAKVAFTGSTEVGQQIMQYATQNIIPVTLELGGKSPNIFFADVMDEEDAFFDKALEGFALFAFNQGEVCTCPSRALVQESIYERFMERAIRRVESIRSGNPLDSGTQMGAQVSHGQLETILNYIDIGKKEGADILTGGRRKELDGELKEGYYLEPTILFGKNNMRVFQEEIFGPVLAVTTFKTMEEALEIANDTQYGLGAGVWSRNGNLAYKMGRGIQAGRVWTNCYHAYPAHAAFGGYKQSGIGRETHKMMLEHYQQTKCLLVSYSDKPLGLF
>NZ_CP019412.1|WP_001188271.1|3626495_3627377_+|ROK-family-protein
MQQYIGIDVGGTHVKYGVINSDGEELTHHQFDTPEDASTFTRKWQDVVARCQQDYDIAAIGVSFPGHINPHNGHAAKAGALAYLDDVNLMELFSGLTDLPLVVENDANCAALGEMWRGAGQHYDNLVCITIGTGIGGGIIVGRELYRGAHFHAGEFGVMPVGNNGESMHKIASTSGLMASCRQALALPAEEMPPADVIFERMATDVHLREAVNDWARYLSRGVYSVISMFDPGVVLIGGGISEQEKLYPLLTRHLETFEMWEALQVPIQPCQLGNQAGRLGAVWLAQQKLDRS
>NZ_CP019412.1|WP_023212606.1|3627448_3628600_-|L-threonine-dehydrogenase
MAASTFFIPSVNVIGADSLKNAMNTMAEYGFRRTLIVTDAMLTKLGVAGDIQKALQERDIFSVIYDGTQPNPTTSNVAAGLKLLKENGCDSVISLGGGSPHDCAKGIALVAANGGDIRDYEGVDRSAKPQLPMIAINTTAGTASEMTRFCIITDEERHIKMAIVDKHVTPLLSVNDSSLMVGMPKSLTAATGMDALTHAIEAYVSVAATPITDACALKAVTMIAENLVVAVEEGSNVQAREAMAYAQFLAGMAFNNASLGYVHAMAHQLGGFYNLPHGVCNAVLLPHVQVFNSQVAAARLRDCAAAMGVDVSDMSEAEGAQACVAAIRQLSQKVNIPAGLRELNVKEEDIPVLATNALKDACGLTNPIQATHDEIVEIYRAAM
>NZ_CP019412.1|WP_000582383.1|3628785_3630636_-|selenocysteine-specific-translation-elongation-factor
MIIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHALLVVACDDGVMAQTREHLQILQLTGNLQLTVALTKADRVDEARIGEVREEVLAALDNYGFADTVLFVTAANEGRGIAELRAHLQQLPARLHAAQHRFRLAIDRAFTVKGAGLVVTGTALSGEVKVGDTLWLTGVNKPMRVRSLHAQNQPTDHAHAGQRIALNIAGDAEKEQLNRGDWLLSDAPVGEAFSRVIVSLALHAPLSQWQPLHIHHAASHVTGRVSLLEGGLAELIFDTPLWLADNDRLVLRDISARATLAGARVVTLKAPRRGKRKPDYLHWLSTLAAAQDDSAALAIHLERGAVNLPDFGWARQLNPLGMRQLIEQHGFIQAGDNLLSAPVAARWQRKILDTLATYHEQHRDEPGPGRERLRRMALPMEDEALVLMLIERMRDDGLIHSHHGWLHLPDHKAGFSDEQQAVWQKVEPLFGDEPWWVRDLAKETGTEEQLMRLVLRQAAQQGIITAIVKDRYYRNDRIVAFANMIRELDQERGSTCAADFRDRLNVGRKLAIQILEYFDRIGFTRRRGNDHLLRDALLFPQKE
>NZ_CP019412.1|WP_023212607.1|3630632_3632024_-|L-seryl-tRNA(Sec)-selenium-transferase
MTSETRTLYSQLPAIDRLLHDSAFLSLRDRYGHTQVVDLLRRMLDDARDVIRNTQTLPDWYADWAQEAKLRLENAAQSALRPVINLTGTVLHTNLGRALQAQEAIEAVTQAMRAPVTLEYDLDGAGRGHRDRALATLLCRITGAEDACIVNNNAAAVLLMLAATASGKEVAVSRGELVEIGGAFRIPDVMRQAGCTLHEVGTTNRTHAKDYRQAVNENTGLLMKVHTSNYSIEGFTKTVEEAELAEIGRELDIPVVADLGSGSLVDLSQYGLPKEPMPQQLIAAGVSLVSFSGDKLLGGPQAGIIVGKKAMIAQLQSHPLKRALRADKMTLAALEATLRLYLHPEALAEKLPTLRLLTRSEASIREQAQRLQARLAARYGDEFALEVKPCLSQIGSGSLPVDRLPSAAMTFTPHDGRGSRLEALAARWRTLPVPVIGRIYDGRLWLDMRCLEDESRFMEMMLK
>NZ_CP019412.1|WP_000766675.1|3632122_3632731_-|glutathione-S-transferase
MKLIGSYTSPFVRKISILLLEKGITFEFINELPYEADNGVAQYNPLGKVPALVTEKGEYWFDSPIIAEYIELLDIAPAMLPRDPMAALKVRQLEALADGIMDAALVSVREQARPAAQQSETELLRQREKINRSLDMLESYLSDGTLKTDTVNLATIAIACAVGYLNFRRVAPGWCVSRPHLVKLVETLFQRESFARTEAPKA
>NZ_CP019412.1|WP_023212608.1|3633206_3635123_+|PTS-mannitol-transporter-subunit-IICBA
MSSDIKIKVQSFGRFLSNMVMPNIGAFIAWGIITALFIPTGWLPNETLAKLVGPMITYLLPLLIGYTGGRLVGGERGGVVGAITTMGVIVGADMPMFLGSMIAGPLGGYCIKKFDSWVDGKIKSGFEMLVNNFSAGIIGMILAILAFLGIGPAVEVLSKILAAGVNFMVAHDMLPLASIFVEPAKILFLNNAINHGIFSPLGIQQSHEMGKSIFFLIEANPGPGMGVLLAYMFFGRGSAKQSAGGAAIIHFLGGIHEIYFPYVLMNPRLILAVILGGMTGVFTLTILNGGLVSPASPGSILAVLAMTPKGAYFANIAAIVAAMAVSFLVSAILLKTSKVKEEDDIEAATRRMHDMKAESKGASPLAAGDVTNDLSHVRKIIVACDAGMGSSAMGAGVLRKKVQDAGLSQISVTNSAINNLPPDVDLVITHRDLTERAMRQVPQAQHISLTNFLDSGLYTSLTERLVAAQRHNTNEEKVRDHLKDSFEEGDNNLFKLGAENIFLGRKAANKEEAIRFAGEQLVKGGYVEPEYVEAMLDREKLTPTYLGESIAVPHGTVEAKDRVLKTGVVFCQYPEGVRFGEEEDDIARLVIGIAARNNEHIQVITSLTNALDDESVIERLAHTTSVDEVLELLAGKKA
>NZ_CP019412.1|WP_000645385.1|3635343_3636492_+|mannitol-1-phosphate-5-dehydrogenase
MKALHFGAGNIGRGFIGKLLADAGIQLTFADVNQVVLDALNARHSYQVHVVGENEQVDTVSGVNAVSSIGDDVVDLIAHVDLITTAVGPVVLERIAPAIAKGLVKRKAQGVDAPLNIIACENMVRGTTQLKGHVMNALADGDKAWVEQHVGFVDSAVDRIVPPSASATHDPLEVTVETFSEWIVDKTQFKGALPTIPGMELTDNLMAFVERKLFTLNTGHAITAYLGKLAGHQTIRDAILDESIRAVVKGAMEESGAVLIKRYGFDADKHAAYIQKILGRFENPYLKDDVERVGRQPLRKLSAGDRLIKPLLGTLEYGLPHVNLVKGIAAAMHFRSEEDPQAQELAALIDEKGPQAALAQISGLDANSDVVAEAVNAYNATK
>NZ_CP019412.1|WP_000193201.1|3636488_3637079_+|MltR-family-transcriptional-regulator
MTQNPAQVSLRPNNRLSDMQAIMEQTQAFENRVLERLNAGKTVRSFLITAVELLTEAVNILVLQVFRKDDYAVKYAVEPLLDGDGPLGDLSVRLKLIYGLGVLSRTEYEDAELLMALREELNHDGNEYAFTDDEILGPFGELHCVMALPPPPHFDTSDAALYAMQIQRYQQAVRSTMVLSLTELISKISLKKAFQK
>NZ_CP019412.1|WP_001062558.1|3637088_3637298_-|hypothetical-protein
MAKIGENVPLLIDKAVDFMASSQAFREYLNKTPPRDYVPSEVPSESAPIYLQRLEYYRRLYRPKEEERG

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP019412_2	2.2\|2867230\|32\|NZ_CP019412\|CRISPRCasFinder,CRT	2867230-2867261	32	NZ_CP041606	Streptomyces sp. S1D4-14 plasmid pS1D4-14.2, complete sequence	6595-6626	6	0.812
NZ_CP019412_2	2.2\|2867230\|32\|NZ_CP019412\|CRISPRCasFinder,CRT	2867230-2867261	32	NC_008826	Methylibium petroleiphilum PM1 plasmid RPME01, complete sequence	343727-343758	8	0.75
NZ_CP019412_2	2.9\|2867657\|32\|NZ_CP019412\|CRISPRCasFinder,CRT,PILER-CR	2867657-2867688	32	MK605244	Nodularia phage vB_NspS-kac65v162, complete genome	141954-141985	8	0.75
NZ_CP019412_2	2.9\|2867657\|32\|NZ_CP019412\|CRISPRCasFinder,CRT,PILER-CR	2867657-2867688	32	MK605242	Nodularia phage vB_NspS-kac65v151, complete genome	141539-141570	8	0.75
NZ_CP019412_2	2.9\|2867657\|32\|NZ_CP019412\|CRISPRCasFinder,CRT,PILER-CR	2867657-2867688	32	MK605243	Nodularia phage vB_NspS-kac65v161, complete genome	141656-141687	8	0.75
NZ_CP019412_2	2.2\|2867230\|32\|NZ_CP019412\|CRISPRCasFinder,CRT	2867230-2867261	32	NZ_CP049244	Rhizobium pseudoryzae strain DSM 19479 plasmid unnamed3, complete sequence	20537-20568	9	0.719
NZ_CP019412_2	2.2\|2867230\|32\|NZ_CP019412\|CRISPRCasFinder,CRT	2867230-2867261	32	NZ_CP038639	Cupriavidus oxalaticus strain X32 plasmid unnamed4, complete sequence	222471-222502	9	0.719
NZ_CP019412_2	2.2\|2867230\|32\|NZ_CP019412\|CRISPRCasFinder,CRT	2867230-2867261	32	MT075871	Klebsiella phage vB_KleS-HSE3, complete genome	29026-29057	9	0.719
NZ_CP019412_2	2.2\|2867230\|32\|NZ_CP019412\|CRISPRCasFinder,CRT	2867230-2867261	32	MN694675	Marine virus AFVG_250M635, complete genome	6608-6639	10	0.688

1. spacer 2.2|2867230|32|NZ_CP019412|CRISPRCasFinder,CRT matches to NZ_CP041606 (Streptomyces sp. S1D4-14 plasmid pS1D4-14.2, complete sequence) position: , mismatch: 6, identity: 0.812

acggcaacggatgcgaccgccaacgcgatccc	CRISPR spacer
aagtcgtcggaggcgacctccaacgcgatccc	Protospacer
* * *. **** ****** *************

2. spacer 2.2|2867230|32|NZ_CP019412|CRISPRCasFinder,CRT matches to NC_008826 (Methylibium petroleiphilum PM1 plasmid RPME01, complete sequence) position: , mismatch: 8, identity: 0.75

acggcaac-----ggatgcgaccgccaacgcgatccc	CRISPR spacer
-----aacttcctcgaagcgaccgccaccgcgatccc	Protospacer
     ***      ** ********** *********

3. spacer 2.9|2867657|32|NZ_CP019412|CRISPRCasFinder,CRT,PILER-CR matches to MK605244 (Nodularia phage vB_NspS-kac65v162, complete genome) position: , mismatch: 8, identity: 0.75

ggggcttgattgcctaaacaaacttttctggg	CRISPR spacer
ggggcttgtttgcctatacaaacaccttctgg	Protospacer
******** ******* ****** ..*.. **

4. spacer 2.9|2867657|32|NZ_CP019412|CRISPRCasFinder,CRT,PILER-CR matches to MK605242 (Nodularia phage vB_NspS-kac65v151, complete genome) position: , mismatch: 8, identity: 0.75

ggggcttgattgcctaaacaaacttttctggg	CRISPR spacer
ggggcttgtttgcctatacaaacaccttctgg	Protospacer
******** ******* ****** ..*.. **

5. spacer 2.9|2867657|32|NZ_CP019412|CRISPRCasFinder,CRT,PILER-CR matches to MK605243 (Nodularia phage vB_NspS-kac65v161, complete genome) position: , mismatch: 8, identity: 0.75

ggggcttgattgcctaaacaaacttttctggg	CRISPR spacer
ggggcttgtttgcctatacaaacaccttctgg	Protospacer
******** ******* ****** ..*.. **

6. spacer 2.2|2867230|32|NZ_CP019412|CRISPRCasFinder,CRT matches to NZ_CP049244 (Rhizobium pseudoryzae strain DSM 19479 plasmid unnamed3, complete sequence) position: , mismatch: 9, identity: 0.719

acggcaacggatgcgaccgccaacgcgatccc	CRISPR spacer
gtcgtcatcgatgcgaccggcaatgcgatccc	Protospacer
.. *. *. ********** ***.********

7. spacer 2.2|2867230|32|NZ_CP019412|CRISPRCasFinder,CRT matches to NZ_CP038639 (Cupriavidus oxalaticus strain X32 plasmid unnamed4, complete sequence) position: , mismatch: 9, identity: 0.719

acggcaacggatgcgaccgccaacgcgatccc	CRISPR spacer
gtttcggcggatgcgaccggcaaggcgatcac	Protospacer
..  *..************ *** ****** *

8. spacer 2.2|2867230|32|NZ_CP019412|CRISPRCasFinder,CRT matches to MT075871 (Klebsiella phage vB_KleS-HSE3, complete genome) position: , mismatch: 9, identity: 0.719

acggcaacggatgcgaccgccaacgcgatccc	CRISPR spacer
cttgtagtcgatgcggccgcctacgcgatccc	Protospacer
 . *.*.. ******.***** **********

9. spacer 2.2|2867230|32|NZ_CP019412|CRISPRCasFinder,CRT matches to MN694675 (Marine virus AFVG_250M635, complete genome) position: , mismatch: 10, identity: 0.688

acggcaacggatgcgaccgccaacgcgatccc	CRISPR spacer
acggcaatggatgcgtccgccaattcagcaaa	Protospacer
*******.******* *******. *...

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1173349 : 1181627

Escherichia_phage(42.86%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000444506.1\|1173349_1174600_+	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	2.0e-19	90.7
WP_023212263.1\|1175045_1176170_+	type III secretion system effector SopF	NA	NA	NA	NA
WP_023212262.1\|1177214_1177628_+	subtilase cytotoxin subunit B	A0A0U2KD34	Escherichia_phage	5.5e-19	38.6
WP_000733630.1\|1177644_1178373_+	pertussis-like toxin subunit ArtA	A0A0U2KD26	Escherichia_phage	1.6e-61	52.5
WP_000158843.1\|1178565_1179108_+	glycoside hydrolase family 108 protein	A0A0U2S643	Escherichia_phage	6.2e-71	67.0
WP_001277616.1\|1179255_1179633_-	DUF1353 domain-containing protein	I1TQ41	Pseudomonas_phage	2.2e-14	38.4
WP_001529135.1\|1179705_1180515_-	cytolethal distending toxin S-CDT	A5LH53	Enterobacteria_phage	2.1e-62	50.0
WP_001036548.1\|1181012_1181177_+	hypothetical protein	NA	NA	NA	NA
WP_000497451.1\|1181387_1181627_-	virulence protein MsgA	K7P6H1	Enterobacteria_phage	8.5e-33	88.6

DBSCAN-SWA_2

1800183 : 1883637

Enterobacteria_phage(33.33%)

protease,transposase,lysis,head,tail,capsid,terminase,portal,holin,integrase

attL 1847926:1847940|attR 1885681:1885695

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000984498.1\|1800183_1801065_-\|protease	protease HtpX	NA	NA	NA	NA
WP_001091237.1\|1801258_1803307_-	carboxy terminal-processing peptidase	A0A0R6PIZ1	Moraxella_phage	8.0e-87	33.5
WP_000431401.1\|1803326_1804013_-	RNA chaperone ProQ	NA	NA	NA	NA
WP_001518229.1\|1804110_1804608_-	GAF domain-containing protein	NA	NA	NA	NA
WP_023212561.1\|1804736_1806020_+	membrane integrity lipid transport subunit YebS	NA	NA	NA	NA
WP_023212562.1\|1805988_1808628_+	PqiB family protein	NA	NA	NA	NA
WP_001633706.1\|1808705_1810145_+	16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF	NA	NA	NA	NA
WP_024131167.1\|1810262_1810499_+	DUF1480 family protein	NA	NA	NA	NA
WP_000457838.1\|1810609_1810801_+	YebW family protein	NA	NA	NA	NA
WP_023212563.1\|1810819_1811470_-	protein-serine/threonine phosphatase	A0A222YWF0	Escherichia_phage	2.5e-58	51.4
WP_001134848.1\|1811694_1811859_-	hypothetical protein	NA	NA	NA	NA
WP_000182069.1\|1812143_1812866_-	SPI-1 type III secretion system guanine nucleotide exchange factor SopE2	NA	NA	NA	NA
WP_000422887.1\|1813549_1813945_+	DUF1398 domain-containing protein	C6ZCX4	Enterobacteria_phage	7.0e-16	32.8
WP_023212564.1\|1814273_1814750_+	hypothetical protein	NA	NA	NA	NA
WP_000354406.1\|1814878_1815298_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_077909932.1\|1815666_1815936_+	hypothetical protein	B6SCX2	Bacteriophage	1.4e-07	47.9
WP_001576018.1\|1816101_1816242_+	hypothetical protein	NA	NA	NA	NA
WP_001233453.1\|1818436_1819351_+	DMT family transporter	NA	NA	NA	NA
WP_000480735.1\|1819483_1819642_+	hypothetical protein	NA	NA	NA	NA
WP_000848066.1\|1819651_1820266_+	disulfide bond formation protein B	NA	NA	NA	NA
WP_001537204.1\|1820753_1820900_+	hypothetical protein	NA	NA	NA	NA
WP_000457876.1\|1821413_1821539_-	hypothetical protein	NA	NA	NA	NA
WP_031603924.1\|1822108_1822309_+	phage virulence factor PagK family protein	NA	NA	NA	NA
WP_001629197.1\|1825011_1825503_-	DUF1441 family protein	Q9EYD0	Enterobacteria_phage	7.6e-44	56.2
WP_024134652.1\|1825557_1825740_+	hypothetical protein	NA	NA	NA	NA
WP_000789530.1\|1825804_1825972_+	lytic enzyme	NA	NA	NA	NA
WP_001633683.1\|1826228_1826762_-	DUF2514 domain-containing protein	A0A291LBG9	Klebsiella_phage	1.6e-10	42.4
WP_076735114.1\|1827076_1828183_+	PD-(D/E)XK nuclease-like domain-containing protein	Q9QF34	Lambdoid_phage	3.3e-55	66.7
WP_001633682.1\|1828179_1829259_+\|integrase	tyrosine-type recombinase/integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	3.3e-100	52.5
WP_076735115.1\|1830211_1831012_+	hypothetical protein	NA	NA	NA	NA
WP_076735116.1\|1832146_1832842_+	T3SS effector NleG family protein	NA	NA	NA	NA
WP_076735117.1\|1833664_1834237_-\|tail	tail fiber assembly protein	A0A0M4RTP2	Salmonella_phage	3.6e-93	87.8
WP_076735118.1\|1834226_1835111_-	macro domain-containing protein	A0A0M4QWS3	Salmonella_phage	1.4e-136	82.7
WP_076735119.1\|1835107_1837480_-\|tail	prophage tail fiber N-terminal domain-containing protein	A0A0K2FIZ6	Escherichia_phage	2.2e-88	63.8
WP_076735120.1\|1837533_1837776_-	hypothetical protein	NA	NA	NA	NA
WP_076735121.1\|1837814_1841177_-	host specificity protein J	K7PKJ2	Enterobacteria_phage	0.0e+00	80.5
WP_023197193.1\|1841239_1841887_-\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	4.2e-90	79.1
WP_076735122.1\|1841784_1842522_-\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	6.8e-129	85.0
WP_001156291.1\|1842528_1843227_-\|tail	phage minor tail protein L	A0A1B5FP81	Escherichia_phage	4.6e-103	75.4
WP_076735123.1\|1843236_1843566_-\|tail	phage tail protein	A5LH39	Enterobacteria_phage	1.3e-42	71.3
WP_076735124.1\|1843568_1846610_-\|tail	phage tail tape measure protein	A0A291AWX1	Escherichia_phage	6.1e-293	65.2
WP_077906431.1\|1846581_1846920_-\|tail	phage tail assembly protein T	A5LH37	Enterobacteria_phage	1.0e-31	62.4
WP_000479607.1\|1846916_1847312_-\|tail	phage minor tail protein G	A5LH36	Enterobacteria_phage	2.3e-30	56.5
WP_078060252.1\|1847362_1848112_-	Ig-like domain-containing protein	A0A291AWU6	Escherichia_phage	2.5e-99	76.9
1847926:1847940	attL	NA	NA	NA	NA
WP_000033885.1\|1848119_1848521_-\|tail	tail protein	Q9G0F3	Phage_Gifsy-1	8.1e-52	100.0
WP_000677089.1\|1848517_1849096_-\|tail	phage tail protein	A5LH33	Enterobacteria_phage	3.7e-82	80.2
WP_000817265.1\|1849204_1850335_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	Q9G0F2	Phage_Gifsy-1	4.0e-213	98.1
WP_000083292.1\|1850367_1850751_-\|tail	tail attachment protein	A0A0K2FJB7	Enterobacteria_phage	1.2e-28	55.6
WP_023165594.1\|1850761_1851133_-	DNA-packaging protein FI	NA	NA	NA	NA
WP_000522566.1\|1851190_1852219_-\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	1.7e-114	61.1
WP_000011260.1\|1852273_1852621_-\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	9.2e-20	52.7
WP_076735126.1\|1852633_1854130_-	S49 family peptidase	A0A0K2FI53	Enterobacteria_phage	6.7e-99	52.9
WP_061873945.1\|1854119_1855700_-\|portal	phage portal protein	K7P6U7	Enterobacteria_phage	9.6e-189	62.8
WP_000201415.1\|1855696_1855900_-	gpW family protein	K7PM10	Enterobacteria_phage	1.9e-17	73.8
WP_023187571.1\|1855883_1857815_-\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	1.7e-259	65.9
WP_001102152.1\|1857786_1858332_-\|terminase	terminase small subunit	A0A0U2S671	Escherichia_phage	1.9e-56	79.9
WP_000669689.1\|1858617_1859019_+	PPC domain-containing protein	NA	NA	NA	NA
WP_086015771.1\|1859245_1859701_-\|lysis	lysis protein	A0A0M4RD57	Salmonella_phage	8.0e-56	78.8
WP_065660702.1\|1860018_1860558_-	lysozyme	S5MQK2	Escherichia_phage	5.7e-77	74.1
WP_023260642.1\|1860535_1860838_-\|holin	phage holin family protein	NA	NA	NA	NA
WP_000658042.1\|1861040_1861229_-	hypothetical protein	NA	NA	NA	NA
WP_076735127.1\|1861587_1863834_+	SET domain-containing protein	NA	NA	NA	NA
WP_065660700.1\|1863954_1864317_-	antitermination protein	Q777W5	Enterobacteria_phage	1.7e-53	80.0
WP_000784711.1\|1864618_1864813_-	hypothetical protein	S4TNP0	Salmonella_phage	7.9e-13	61.5
WP_076735128.1\|1864809_1865409_-	DUF1367 family protein	A0A0U2RT94	Escherichia_phage	7.0e-100	84.4
WP_000911593.1\|1865472_1865721_-	hypothetical protein	NA	NA	NA	NA
WP_000589341.1\|1866255_1866762_-	hypothetical protein	NA	NA	NA	NA
WP_076735129.1\|1867064_1867442_-	DUF977 family protein	A0A088CBK9	Shigella_phage	1.5e-15	36.8
WP_000788954.1\|1867459_1868212_-	ATP-binding protein	A0A088CBP4	Shigella_phage	5.9e-104	76.5
WP_076735130.1\|1868218_1869094_-	DNA-binding protein	A0A088CD36	Shigella_phage	7.0e-32	58.5
WP_001534383.1\|1869138_1869633_-	hypothetical protein	NA	NA	NA	NA
WP_001033909.1\|1869619_1869874_-	helix-turn-helix transcriptional regulator	K7PKH4	Enterobacteria_phage	1.2e-16	59.4
WP_023165607.1\|1869970_1870396_+	helix-turn-helix domain-containing protein	K7PH71	Enterobacterial_phage	9.3e-14	56.3
WP_076735131.1\|1870840_1871020_-	hypothetical protein	NA	NA	NA	NA
WP_000103933.1\|1871280_1871556_+	hypothetical protein	NA	NA	NA	NA
WP_000682660.1\|1871560_1871767_+	cell division inhibitor protein	I6PBM9	Cronobacter_phage	3.0e-10	45.6
WP_000799629.1\|1871842_1872178_+	hypothetical protein	NA	NA	NA	NA
WP_076735132.1\|1872318_1875009_+	exodeoxyribonuclease VIII	Q9QF34	Lambdoid_phage	1.1e-115	75.3
WP_001534364.1\|1875001_1875832_+	recombination protein RecT	A0A1P8DTF2	Proteus_phage	1.0e-104	72.0
WP_001033921.1\|1875867_1876188_+	hypothetical protein	A0A222YY67	Escherichia_phage	3.6e-34	60.2
WP_047598971.1\|1876180_1876513_+	hypothetical protein	S4TNP2	Salmonella_phage	3.8e-15	74.2
WP_000276802.1\|1877124_1877304_+	DUF1187 family protein	A0A0U2QL97	Escherichia_phage	4.3e-13	62.1
WP_076735133.1\|1877402_1877831_+	hypothetical protein	NA	NA	NA	NA
WP_076735134.1\|1877891_1878194_+	excisionase	A0A2H4J5E1	uncultured_Caudovirales_phage	1.5e-10	37.9
WP_076735135.1\|1878144_1879221_+\|integrase	phage integrase Arm DNA-binding domain-containing protein	A0A2H4IYC8	uncultured_Caudovirales_phage	4.3e-92	49.0
WP_076735136.1\|1879271_1880477_-	XRE family transcriptional regulator	A0A0U4JD08	Gordonia_phage	7.9e-26	26.2
WP_076735137.1\|1880489_1881158_-	hypothetical protein	NA	NA	NA	NA
WP_000722368.1\|1881648_1882002_-	YebY family protein	NA	NA	NA	NA
WP_001633680.1\|1882018_1882894_-	copper homeostasis membrane protein CopD	NA	NA	NA	NA
WP_001633679.1\|1882894_1883269_-	CopC domain-containing protein YobA	NA	NA	NA	NA
WP_000856225.1\|1883406_1883637_+	DNA polymerase III subunit theta	H9C187	Pectobacterium_phage	2.9e-14	60.3
1885681:1885695	attR	NA	NA	NA	NA

DBSCAN-SWA_3

1986299 : 1993551

Morganella_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_023212512.1\|1986299_1987730_-	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	7.8e-105	58.1
WP_023212513.1\|1987803_1988499_-	phosphohydrolase	A0A1D6Y7U0	Golden_Marseillevirus	4.3e-08	28.7
WP_023212514.1\|1988578_1988890_-	hypothetical protein	NA	NA	NA	NA
WP_023212515.1\|1989539_1990736_+	porin OmpS1	Q1MVN1	Enterobacteria_phage	7.4e-109	56.6
WP_024131163.1\|1990994_1991183_-	hypothetical protein	NA	NA	NA	NA
WP_000208509.1\|1991193_1991406_-	cold-shock protein	A0A1W6JNX5	Morganella_phage	3.9e-21	70.0
WP_023212516.1\|1991860_1993129_-	Y-family DNA polymerase	I6RSM4	Salmonella_phage	6.4e-228	92.4
WP_000394197.1\|1993131_1993551_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	8.5e-36	60.5

DBSCAN-SWA_4

2080580 : 2091087

Enterobacteria_phage(37.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000126349.1\|2080580_2081894_-	lipopolysaccharide biosynthesis protein RfbH	H8ZJ36	Ostreococcus_tauri_virus	7.0e-52	35.1
WP_001528452.1\|2081920_2083000_-	CDP-glucose 4,6-dehydratase	A0A222YY99	Synechococcus_phage	2.3e-16	24.5
WP_000648785.1\|2083004_2083778_-	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA
WP_001528498.1\|2083793_2084768_-	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA
WP_000973709.1\|2084773_2085325_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	1.3e-52	58.0
WP_015405859.1\|2085325_2086204_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	2.7e-108	65.5
WP_015405858.1\|2086251_2087151_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	6.7e-30	36.0
WP_000697846.1\|2087150_2088236_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.6e-102	53.9
WP_023212543.1\|2088612_2089506_-	GalU regulator GalF	A0A127AW70	Bacillus_phage	3.6e-44	42.2
WP_001144954.1\|2089683_2091087_-	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	3.1e-21	28.2

DBSCAN-SWA_5

2158254 : 2167425

Enterobacteria_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_023212308.1\|2158254_2160288_+\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	1.0e-54	27.6
WP_000703136.1\|2160528_2160987_+	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	7.6e-54	73.2
WP_023137005.1\|2161158_2161689_+	YehR family lipoprotein	NA	NA	NA	NA
WP_000950413.1\|2161745_2162213_-	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	3.9e-74	90.3
WP_000598637.1\|2162259_2162979_-	two-component system response regulator BtsR	NA	NA	NA	NA
WP_000272850.1\|2162975_2164661_-	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	4.8e-279	91.3
WP_001240416.1\|2164883_2165615_+	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	4.5e-101	87.9
WP_001261696.1\|2165674_2165782_+	protein YohO	NA	NA	NA	NA
WP_000824854.1\|2165762_2166494_-	ABC transporter permease	NA	NA	NA	NA
WP_000569166.1\|2166477_2167425_-	ABC transporter ATP-binding protein	F2Y1V5	Organic_Lake_phycodnavirus	3.7e-10	27.8

DBSCAN-SWA_6

2688236 : 2694988

Enterobacteria_phage(85.71%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_023209739.1\|2688236_2688803_-	hypothetical protein	Q7M2A1	Enterobacteria_phage	4.8e-58	64.3
WP_024146987.1\|2688819_2689065_-	ogr/Delta-like zinc finger family protein	Q7M294	Enterobacteria_phage	4.1e-30	75.3
WP_000149860.1\|2689061_2689799_-	hypothetical protein	Q7M2A2	Enterobacteria_phage	9.0e-81	64.4
WP_001673700.1\|2690336_2690603_+	AlpA family transcriptional regulator	Q7M299	Enterobacteria_phage	3.6e-32	73.9
WP_000980374.1\|2690599_2691148_+	host cell division inhibitor Icd-like protein	Q7M2A7	Enterobacteria_phage	9.7e-32	69.4
WP_001216600.1\|2691144_2691372_+	hypothetical protein	NA	NA	NA	NA
WP_023209824.1\|2691368_2691689_+	DUF5375 domain-containing protein	NA	NA	NA	NA
WP_023209823.1\|2691703_2694037_+	toprim domain-containing protein	Q7M2A8	Enterobacteria_phage	0.0e+00	84.0
WP_001592532.1\|2694487_2694988_+	hypothetical protein	A0A2H4J2P5	uncultured_Caudovirales_phage	8.9e-40	61.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP019412

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection