CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP019417	Salmonella enterica subsp. enterica serovar Wandsworth str. SA20092095 chromosome, complete genome	3 crisprs	WYL,DinG,cas3,DEDDh,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	0	22	12	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP019417_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP019417_1

3019100-3020348

TypeI-E

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRISPRCasFinder
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	PILER-CR

20 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of NZ_CP019417_1

>merge|NZ_CP019417|1|3019100-3020348|CRISPRCasFinder,CRT,PILER-CR
GTGTTTATCCCCGCTGACGCGGGGAACATTTTTCAGCCCTTGTCGACTGCGGAACGCCCCTCGGTTTATCCCCGCTAGCGCGGGGAACACACCGACAGCCAGGTGACGAACGCCACCAACGACGGTTTATCCCCGCTGGCGCGGGGAACACTCCGGATGTCTCCCCCCGCGCCGTTTGAATATCGGTTTATCCCCGCTGGCGCGGGGAACACTGGGGTTACCTGCACTCCAGTCCCGGCAGGTACGGTTTATCCCCGCTGGCGCGGGGAACACTGGGGTTACCTGCACTCCAGTCCCGGCAGGTACGGTTTATCCCCGCTGGCGCGGGGAACACAGCCCCAAGGCTAACAGAACCAAACTCTACATCGGTTTATCCCCGCTGGCGCGGGGAACACGGCGTTTTGTTCCTGGAGATTGACGGCTGTCGCGGTTTATCCCCGCTGGCGCGGGGAACACGGCGTTTTGTTCCTGGAGATTGACGGCTGTCGCGGTTTATCCCCGCTGGCGCGGGGAACACCTAACACTAATGCGAAAATCTGCGTAAATTGTCGGTTTATCCCCGCTGGCGCGGGGAACACATGCCAAAAATAAGCGGCTGGCGACGGGCACCCGGTTTATCCCCGCTGGCGCGGGGAACACGGTGTGCCGGAGCTGGGAGAAATGGCCGACGCCGGTTTATCCCCGCTGGCGCGGGGAACACTTGTTTTGCTTTTTTCGCCAGGCGGCGCATATCGGTTTATCCCCGCTGGCGCGGGGAACACTACTCTATTTATTTCTATATCCCACGTTCGATCGGTTTATCCCCGCTGGCGCGGGGAACACCAAAATATTCAACTGTCTGCCCGCAGGTGGGGCGGTTTATCCCCGCTGGCGCGGGGAACACTGGTCAAGTAATACGGTATACGGGGCCACAAACGGTTTATCCCCGCTGGCGCGGGGAACACATCACGGCTTACGAAACCGTTTCGCGATAGCTCGGTTTATCCCCGCTGGCGCGGGGAACACATGCCAGGGGGTTATATCGGTGAGTCTGGAGACGGTTTATCCCCGCTGGCGCGGGGAACACATAGATGATGTCTGTTGCTATCTGGCTATCGGCGGTTTATCCCCGCTGGCGCGGGGAACACACTAACCTCTGGAGGGAATGGTATTTCTATTCCGGTTTATCCCCGCTGGCGCGGGGAACACGATTCGTGATTAGCATTAAGCACCAAAAGAACCGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP019417|1|1|3019100-3020348|CRISPRCasFinder
GTGTTTATCCCCGCTGACGCGGGGAACAT	TTTTCAGCCCTTGTCGACTGCGGAACGCCCCT
CGGTTTATCCCCGCTAGCGCGGGGAACAC	ACCGACAGCCAGGTGACGAACGCCACCAACGA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCCGGATGTCTCCCCCCGCGCCGTTTGAATAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGGGGTTACCTGCACTCCAGTCCCGGCAGGTA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGGGGTTACCTGCACTCCAGTCCCGGCAGGTA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGCCCCAAGGCTAACAGAACCAAACTCTACAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGCGTTTTGTTCCTGGAGATTGACGGCTGTCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGCGTTTTGTTCCTGGAGATTGACGGCTGTCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CTAACACTAATGCGAAAATCTGCGTAAATTGT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATGCCAAAAATAAGCGGCTGGCGACGGGCACC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGTGTGCCGGAGCTGGGAGAAATGGCCGACGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTGTTTTGCTTTTTTCGCCAGGCGGCGCATAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TACTCTATTTATTTCTATATCCCACGTTCGAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CAAAATATTCAACTGTCTGCCCGCAGGTGGGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGGTCAAGTAATACGGTATACGGGGCCACAAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATCACGGCTTACGAAACCGTTTCGCGATAGCT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATGCCAGGGGGTTATATCGGTGAGTCTGGAGA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATAGATGATGTCTGTTGCTATCTGGCTATCGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACTAACCTCTGGAGGGAATGGTATTTCTATTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GATTCGTGATTAGCATTAAGCACCAAAAGAAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP019417|1|1|3019100-3020348|CRT
GTGTTTATCCCCGCTGACGCGGGGAACAT	TTTTCAGCCCTTGTCGACTGCGGAACGCCCCT
CGGTTTATCCCCGCTAGCGCGGGGAACAC	ACCGACAGCCAGGTGACGAACGCCACCAACGA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCCGGATGTCTCCCCCCGCGCCGTTTGAATAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGGGGTTACCTGCACTCCAGTCCCGGCAGGTA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGGGGTTACCTGCACTCCAGTCCCGGCAGGTA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGCCCCAAGGCTAACAGAACCAAACTCTACAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGCGTTTTGTTCCTGGAGATTGACGGCTGTCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGCGTTTTGTTCCTGGAGATTGACGGCTGTCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CTAACACTAATGCGAAAATCTGCGTAAATTGT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATGCCAAAAATAAGCGGCTGGCGACGGGCACC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGTGTGCCGGAGCTGGGAGAAATGGCCGACGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTGTTTTGCTTTTTTCGCCAGGCGGCGCATAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TACTCTATTTATTTCTATATCCCACGTTCGAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CAAAATATTCAACTGTCTGCCCGCAGGTGGGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGGTCAAGTAATACGGTATACGGGGCCACAAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATCACGGCTTACGAAACCGTTTCGCGATAGCT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATGCCAGGGGGTTATATCGGTGAGTCTGGAGA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATAGATGATGTCTGTTGCTATCTGGCTATCGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACTAACCTCTGGAGGGAATGGTATTTCTATTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GATTCGTGATTAGCATTAAGCACCAAAAGAAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP019417|1|1|3019161-3020348|PILER-CR
CGGTTTATCCCCGCTAGCGCGGGGAACAC	ACCGACAGCCAGGTGACGAACGCCACCAACGA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCCGGATGTCTCCCCCCGCGCCGTTTGAATAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGGGGTTACCTGCACTCCAGTCCCGGCAGGTA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGGGGTTACCTGCACTCCAGTCCCGGCAGGTA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGCCCCAAGGCTAACAGAACCAAACTCTACAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGCGTTTTGTTCCTGGAGATTGACGGCTGTCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGCGTTTTGTTCCTGGAGATTGACGGCTGTCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CTAACACTAATGCGAAAATCTGCGTAAATTGT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATGCCAAAAATAAGCGGCTGGCGACGGGCACC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGTGTGCCGGAGCTGGGAGAAATGGCCGACGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTGTTTTGCTTTTTTCGCCAGGCGGCGCATAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TACTCTATTTATTTCTATATCCCACGTTCGAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CAAAATATTCAACTGTCTGCCCGCAGGTGGGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGGTCAAGTAATACGGTATACGGGGCCACAAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATCACGGCTTACGAAACCGTTTCGCGATAGCT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATGCCAGGGGGTTATATCGGTGAGTCTGGAGA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATAGATGATGTCTGTTGCTATCTGGCTATCGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACTAACCTCTGGAGGGAATGGTATTTCTATTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GATTCGTGATTAGCATTAAGCACCAAAAGAAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019417.1\|WP_076741752.1\|3021654_3022305_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|273869
NZ_CP019417.1\|WP_023204590.1\|3020444_3020738_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	pfam09707_cas2_CAS-I-E	gnl\|CDD\|236930
NZ_CP019417.1\|WP_076741753.1\|3024124_3024676_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
NZ_CP019417.1\|WP_000372384.1\|3016879_3017788_-\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375
NZ_CP019417.1\|WP_076741754.1\|3026240_3028904_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP019417.1\|WP_001660851.1\|3023043_3024102_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|273843
NZ_CP019417.1\|WP_000134246.1\|3011708_3012758_-\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
NZ_CP019417.1\|WP_000741649.1\|3013233_3013944_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
NZ_CP019417.1\|WP_023210684.1\|3022286_3023033_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
NZ_CP019417.1\|WP_001219245.1\|3012754_3013234_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
NZ_CP019417.1\|WP_000039832.1\|3030513_3031248_-\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NZ_CP019417.1\|WP_001660848.1\|3015430_3016870_-\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
NZ_CP019417.1\|WP_076741951.1\|3029347_3030301_+\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
NZ_CP019417.1\|WP_001537530.1\|3014464_3014788_-\|DUF3561-family-protein	unknown	unknown	gnl\|CDD\|371891
NZ_CP019417.1\|WP_000144836.1\|3020737_3021658_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NZ_CP019417.1\|WP_001173663.1\|3014838_3015444_-\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
NZ_CP019417.1\|WP_000517480.1\|3013962_3014274_-\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
NZ_CP019417.1\|WP_000490481.1\|3018038_3019085_+\|aminopeptidase	unknown	unknown	gnl\|CDD\|182299
NZ_CP019417.1\|WP_001221538.1\|3010966_3011728_-\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
NZ_CP019417.1\|WP_001619835.1\|3024672_3026229_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192

Protein	Function_ID	Function_description	E-value
NZ_CP019417.1\|WP_076741752.1\|3021654_3022305_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	1.34821e-73
NZ_CP019417.1\|WP_023204590.1\|3020444_3020738_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	1.3037e-64
NZ_CP019417.1\|WP_076741753.1\|3024124_3024676_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	9.14856e-34
NZ_CP019417.1\|WP_000372384.1\|3016879_3017788_-\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
NZ_CP019417.1\|WP_076741754.1\|3026240_3028904_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	0
NZ_CP019417.1\|WP_001660851.1\|3023043_3024102_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	1.56713e-129
NZ_CP019417.1\|WP_000134246.1\|3011708_3012758_-\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
NZ_CP019417.1\|WP_000741649.1\|3013233_3013944_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	2.24126e-119
NZ_CP019417.1\|WP_023210684.1\|3022286_3023033_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	4.46051e-47
NZ_CP019417.1\|WP_001219245.1\|3012754_3013234_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	3.20925e-104
NZ_CP019417.1\|WP_000039832.1\|3030513_3031248_-\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	6.96009e-139
NZ_CP019417.1\|WP_001660848.1\|3015430_3016870_-\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
NZ_CP019417.1\|WP_076741951.1\|3029347_3030301_+\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
NZ_CP019417.1\|WP_001537530.1\|3014464_3014788_-\|DUF3561-family-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	3.31009e-48
NZ_CP019417.1\|WP_000144836.1\|3020737_3021658_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	9.54577e-157
NZ_CP019417.1\|WP_001173663.1\|3014838_3015444_-\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	4.61291e-146
NZ_CP019417.1\|WP_000517480.1\|3013962_3014274_-\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	1.08865e-64
NZ_CP019417.1\|WP_000490481.1\|3018038_3019085_+\|aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
NZ_CP019417.1\|WP_001221538.1\|3010966_3011728_-\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.7078e-146
NZ_CP019417.1\|WP_001619835.1\|3024672_3026229_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0

>NZ_CP019417.1|WP_000490481.1|3018038_3019085_+|aminopeptidase
MFSATRRFAVILALGVGFILPAQAASPGPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLDNLIVGDKLYFNSGKNTPEAVRTLTRDRALAIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS
>NZ_CP019417.1|WP_000372384.1|3016879_3017788_-|sulfate-adenylyltransferase-subunit-CysD
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF
>NZ_CP019417.1|WP_001660848.1|3015430_3016870_-|sulfate-adenylyltransferase-subunit-CysN
MNTILAQQIANEGGVEAWMMAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTLQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYREETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSANMRWYSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNLDFRGYAGTLASGSVKVGERIKVLPSGVESSVARIVTFDGDKEEACAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMAEQPLAPGQSYDVKLAGKKTRARIEAIRYQIDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVRELDERGATPPMEYSAFELELNALVRRHFPHWDARDLLGDKHGAA
>NZ_CP019417.1|WP_001173663.1|3014838_3015444_-|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVAAREQLHGHRGVVLWFTGLSGSGKSTVAGALEEALHQRGVSTYLLDGDNVRHGLCRDLGFSDADRQENIRRVGEVASLMADAGLIVLTAFISPHRAERQLVKERVGHDRFIEIYVNTPLAICEQRDPKGLYKKARAGELRNFTGIDAIYEAPDSPQVHLNGEQLVTNLVSQLLDLLRRRDIIRS
>NZ_CP019417.1|WP_001537530.1|3014464_3014788_-|DUF3561-family-protein
MRNSHNITFTRSDAFMVDDDATSAFPGAVVGFVSWLLALGIPFLLYGPNTLFFFLYTWPFFLALMPVSVIIGIALHLLVKGKILFSIMFTLLAVGALFGALFIWLLG
>NZ_CP019417.1|WP_000517480.1|3013962_3014274_-|cell-division-protein-FtsB
MGKLTLLLLALLVWLQYSLWFGKNGIHDYSRVNDDVVAQQATNAKLKARNDQLFAEIDDLNGGQEAIEERARNELSMTKPGETFYRLVPDASKRAATAGQTHR
>NZ_CP019417.1|WP_000741649.1|3013233_3013944_-|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MAATLLDVCAVVPAAGFGRRMQTECPKQYLSIGNKTILEHSVHALLAHPRVTRVVIAISPGDHRFAQLPLANHPQITVVDGGNERADSVLAGLQAVAKAQWVLVHDAARPCLHQDDLARLLAISENSRVGGILASPVRDTMKRGEPGKNAIAHTVERADLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPALVEGRADNIKVTRPEDLALAEFYLTRTIHQEKA
>NZ_CP019417.1|WP_001219245.1|3012754_3013234_-|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDEVNVKATTTEKLGFTGRGEGIACEAVALLMKAAK
>NZ_CP019417.1|WP_000134246.1|3011708_3012758_-|tRNA-pseudouridine(13)-synthase-TruD
MTEFDNLTWLHGKPQGSGLLKANPEDFVVVEDLGFTPDGEGEHILLRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDFSAFQLEGCKVLEYARHKRKLRLGALKGNAFTLVLREISDRRDVETRLQAIRDGGVPNYFGAQRFGIGGSNLQGALRWAQSNAPVRDRNKRSFWLSAARSALFNQIVHQRLKKPDFNQVVDGDALQLAGRGSWFVATSEELPELQRRVDEKELMITASLPGSGEWGTQRAALAFEQDAIAQETVLQSLLLREKVEASRRAMLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVVRELINTMGDYAHIAE
>NZ_CP019417.1|WP_001221538.1|3010966_3011728_-|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLNGYQHYDTAAAVTCALLRGLSREPLRTGRILNVNVPDLPLAQVKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVDEGYVSVTPLHVDLTAHSAHDVVSDWLDSVGVGTQW
>NZ_CP019417.1|WP_023204590.1|3020444_3020738_-|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMVVVVTENVPPRLRGRLAVWLLEVRAGVYVGDTSKRIREMIWQQITQLGGCGNAVMAWATNTESGFEFQTWGENRRIPVDLDGLRLVSFLPVENQ
>NZ_CP019417.1|WP_000144836.1|3020737_3021658_-|type-I-E-CRISPR-associated-endonuclease-Cas1
MTFVPLNPIPLKDRTSMIFLQYGQIDVLDGAFVLINKTGVRTHIPVGSVACIMLEPGTRVSHAAVHLASTVGTLLVWVGEAGVRVYSSGQPGGARADKLLYQAKLALDDDLRLKVVRKMYELRFREPPPARRSVEQLRGIEGSRVRATYALLAKQYGVKWHGRNYDPKDWEKGDVVNRCISAATSCLYGISEAAILAAGYAPAIGFIHSGKPLSFVYDIADIIKFESVVPKAFEIAARHPAEPDKEVRLACRDIFRSSKLTGKLIPLIEEVLAAGEIEPPQPAPDMLPPAIPEPESLGDSGHRGHG
>NZ_CP019417.1|WP_076741752.1|3021654_3022305_-|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRITLHTSELSPAQLLHLVECGEYVMRQWLWDLFPGGKERQFLYRREELQGAFRFFVLSQEQPAASAIFDVQTRPFAPMLSAGQTLRFNLRANPTVCKNGKRHDLLMEAKRQRKTQGDSQDIWSYQQQAALTWLARQGEQNGFTLRETSVDAYRQQQIRREKSRQMIQFSSVDYTGVLVINDPVLFLQRLAQGYGKSRAFGCGMMMIKPGDDA
>NZ_CP019417.1|WP_023210684.1|3022286_3023033_-|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSQYLVFQLHGPMASWGVDAPGEVRHSHELPSRSALLGLLAAALGIRRDEEERLNAFNRHYQFLLCASGNPRWARDYHTVQMPKEVRKARYFSRREELQDPELLSALISRRDYYTDAWWMIAVSATPDAPYRLAQLQASLQHPVFPLYLGRKSHPLALPLAPQLLEGSAADVLREAYRWYQDQFNALKLPLPRLQNECWWEGEHDGLTASKILRRRDMPLSRQQWLFGERSVNQGPWLRKEDACISQE
>NZ_CP019417.1|WP_001660851.1|3023043_3024102_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRISSQSLKRAWRTSELFEQALAGHIGIRTGRIAREAAQILVDSGIDAKKAVEYVKNIANCFGKVKEDKKPKEDLTNAETEQLVHISPAEFEAVKALARRLAEEKRPATEEEAELLRHDRMAVDIAMFGRMLAKKTDFNVEAACQVAYAFGVSETIIEDDFFTAVDDLRQASAEDAGAGHLGETGFGSALFYTYICIDKDLLVKNLNDNEELANKTLRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTDQLNVAVKRITSLHKNMNKVYGQRTDTASFDVMNQQGSMEDVLDFICA
>NZ_CP019417.1|WP_076741753.1|3024124_3024676_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSVVTKDDKATLRQWHEELQEKRGLRASLRRSKTVNDACLAEGLHSLLMQTHSLWKNKAPWNVTALAITAALAAHIKFIDEQKSFAAQLGQKKGGDTPVMSKLRFSHLLAVKTPDELLRQLRRAVKLLDGSVNLFSLADDIFCWCQEQNDLLNHHRRQQRPTEFLRIRWALEYYQAGDGDTDN
>NZ_CP019417.1|WP_001619835.1|3024672_3026229_-|type-I-E-CRISPR-associated-protein-Cse1/CasA
MDNFSLLTTPWLPVRFKDGSTGKLAPVNLADENVVDIAATRADLQGAAWQFLLGLLQCSIAPKRYKNWEDIWFDGLHADALHKALAQLEHAFQFGAETPSFMQDFEPLTGEKVSMASLLPETPGAQTTKFNKDHFIKRGVTERFCPHCAALALFSLQLNAPSGGKGYRTGLRGGGPLTTLVELQEYQGERQTPLWRKLWLNVMPQDTADLPLPDQCDATVFPWLAATRTSEQANAVTTPEQVNKLQAYWGMPRRIRLDFATLQSGCCDICGAESDELLGFMTVKNYGVNYDGWRHPLTPYRAPVKDQNAFFSVKPQPGGLIWRDWLGLSQNNQTEANYESPAQVVKVFNARSLTDVKAGIWGFGADFDNMKIRCWYEHHFPLLMTEGLIPDLRKAVQTAARLLSLLRSALKEAWFADAKGARGDFSFIDIDFWNLTQGRFLNLIHDLENGHKPDERLNKWQRELWLFTRHYFDDHVFTNPYESSDLERIMTARKKYFTTSAEKQSAKAAKAKKQEAAE
>NZ_CP019417.1|WP_076741754.1|3026240_3028904_-|CRISPR-associated-helicase/endonuclease-Cas3
MSIYHYWGKSRRGETDGGDDYHLLCWHSLDVAAVGYWMVINNIYFIDHYLKKLGIQDKEQAAQFFAWILCWHDIGKFAHSFQQLYRHEALNIFNEPTRHYEKIAHTTLGYMLWNSWLSECPELFPPSSLSVRKSKRVMALWMPVTTGHHGRPPEAIQELDHFRQQDKDAARDFLLRIKALFPLITLPEAWDEDEGIDQFQQLSWFISAAVVLADWTGSASRYFPRTAEKMPVDTYWQQALAKAQTAITLFPSAANVSAFTGIETLFPFIQHPTPLQQKALELDINVDGAQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLYFGLPTMATANAMFERMANTWLALYQPDSRPSLILAHSARRLMDRFNQSIWSVTLSGTEEPDEAQPYSQGCAAWFADSNKKALLAEVGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAWMSRILEGLIERQASNGNATILLSATLSQQQRDKLVAAFSRGVRRSVQAPLLGHDDYPWLTQVTQTELISQRVDTRKEVERCVDIGWLHSEEACLERIGEAVEKGNCIAWIRNSVDDAIRIYRQLQLSKVVATENLLLFHSRFAFHDRQRIESQTLNLFGKQSGAQRAGKVIIATQVIEQSLDIDCDEMISDLAPVDLLIQRAGRLQRHIRDRNGLVKKSGQDERETPVLRILAPEWDDAPRENWLSSAMRNSAYVYPDHGRMWLTQRILREQGTIRMPQSARLLIESVYGEDVNMPVGFAKTEQLQEGKVHCDRAFAYQMLLNFAPGYCAEISDSLPEKMSTRLAEESVTLWLAKIVDGVVTPYASGEHAWEMSVLRVRQSWWNKHKDEFEKLDGEPLRKWCAQQHQDKDFATVIVVTDCAACGYSANEGLIGMMGE
>NZ_CP019417.1|WP_076741951.1|3029347_3030301_+|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGAKMTWHPELLQESISTLRKEVTGNAQIKTAVYEMMRPAEAPDHPLVEWQDSLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHTYSPFSEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLV
>NZ_CP019417.1|WP_000039832.1|3030513_3031248_-|phosphoadenosine-phosphosulfate-reductase
MSKLDLNALNDLPKVDRVLALAETNAQLETLTAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELKAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG

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Crispr_ID: NZ_CP019417_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP019417_2

3036644-3038136

TypeI-E

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRISPRCasFinder
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	PILER-CR

24 spacers

cas3,cas8e,cse2gr11,cas7

The CRISPR arrays of NZ_CP019417_2

>merge|NZ_CP019417|2|3036644-3038136|CRISPRCasFinder,CRT,PILER-CR
ACGGCTATCCCCGCTGACGCGGGGAACACACGGCAACGGATGCGACCGCCAGCGCGATCCCCGGTTTATCCCCGCTGGCGCGGGGAACACACCGATAAACAACCGCATAGCCTCTTTCGTTTCGATTTATCCCTGCTGGCGCGGGGAACACTGCTCAATAACGTCGTAAATAGCGTAAGCTGGCGGTTTATCCCCGCTGGCGCGGGGAACACTATTTCGCCTTCGGCACTGACGTCACCGTCAACGGTTTATCCCCGCTGGCGCGGGGAACACACCGATAAACAACCGCATAGCCTCTTTCGTTTCGATTTATCCCTGCTGGCGCGGGGAACACTGCTCAATAACGTCGTAAATAGCGTAAGCTGGCGGTTTATCCCCGCTGGCGCGGGGAACACTATTTCGCCTTCGGCACTGACGTCACCGTCAACGGTTTATCCCCGCTGGCGCGGGGAACACAGTTGCCCGGGCCGATTGAGATCCACAGTCTGCGGTTTATCCCCGCTGGCGCGGGGAACACGTTTTTCGGTCCGCCTCTCCCTGGAATAATCACGGTTTATCCCCGCTGGCGCGGGGAACACCTCCCCACGGCACACGGCGTGCGTAGTTTCGACGGTTTATCCCCGCTGGCGCGGGGAACACATGGATGCGAGCGTATCGAGCCAGTCAAGAATCGGTTTATCCCCGCTGGCGCGGGGAACACGCGGCGACCAGCCGCTCTAACCTCAGCCAGAGCGGTTTATCCCCGCTGGCGCGGGGAACACGAGATAATCGGCGTTGTCGGCCACTCATGGCGCGGTTTATCCCCGCTGGCGCGGGGAACACTCTATCTCCGTGCCTCCTACCAGCACGGCGCGCGGTTTATCCCCGCTGGCGCGGGGAACACTGCTGGAGCGTATCGAGCATTTTTAAACGCTCCGGTTTATCCCCGCTGGCGCGGGGAACACCTCACCTGCTCGTCTGTTAGTTTGCTATTGGTCGGTTTATCCCCGCTGGCGCGGGGAACACTCTCTCACGTAAAAATTAAATACCCGATACGGCGGTTTATCCCCGCTGGCGCGGGGAACACTGAGTTACGGGCGGGAACTTTATCATAATGCGCGGTTTATCCCCGCTGGCGCGGGGAACACTGTAGCCAACTGCCCGAAGACATGGAGCGGATCGGTTTATCCCCGCTGGCGCGGGGAACACCGACGCTCCTTTTCCCGATCAATAGCGACGTCCGGTTTATCCCCGCTGGCGCGGGGAACACCTGATTGCCAAAATCAAAAAACAGACCGAGTCCGGTTTATCCCCGCTGGCGCGGGGAACACTTGAAAGTGAAATAAATAATTCAAATCCAGTGCGGTTTATCCCCGCTGGCGCGGGGAACACCTGCGCTCTATCTTGCTTTGTGGAGGGAACGGCGGTTTATCCCCGCTGGCGCGGGGAACACTAAGGAATATCAAATTATGGCGTCATTTAACCCGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP019417|2|2|3036644-3038136|CRISPRCasFinder
ACGGCTATCCCCGCTGACGCGGGGAACAC	ACGGCAACGGATGCGACCGCCAGCGCGATCCC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACCGATAAACAACCGCATAGCCTCTTTCGTTT
CGATTTATCCCTGCTGGCGCGGGGAACAC	TGCTCAATAACGTCGTAAATAGCGTAAGCTGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TATTTCGCCTTCGGCACTGACGTCACCGTCAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACCGATAAACAACCGCATAGCCTCTTTCGTTT
CGATTTATCCCTGCTGGCGCGGGGAACAC	TGCTCAATAACGTCGTAAATAGCGTAAGCTGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TATTTCGCCTTCGGCACTGACGTCACCGTCAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGTTGCCCGGGCCGATTGAGATCCACAGTCTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTTTTTCGGTCCGCCTCTCCCTGGAATAATCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CTCCCCACGGCACACGGCGTGCGTAGTTTCGA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATGGATGCGAGCGTATCGAGCCAGTCAAGAAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCGGCGACCAGCCGCTCTAACCTCAGCCAGAG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GAGATAATCGGCGTTGTCGGCCACTCATGGCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTATCTCCGTGCCTCCTACCAGCACGGCGCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGCTGGAGCGTATCGAGCATTTTTAAACGCTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CTCACCTGCTCGTCTGTTAGTTTGCTATTGGT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTCTCACGTAAAAATTAAATACCCGATACGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGAGTTACGGGCGGGAACTTTATCATAATGCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGTAGCCAACTGCCCGAAGACATGGAGCGGAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGACGCTCCTTTTCCCGATCAATAGCGACGTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CTGATTGCCAAAATCAAAAAACAGACCGAGTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTGAAAGTGAAATAAATAATTCAAATCCAGTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CTGCGCTCTATCTTGCTTTGTGGAGGGAACGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TAAGGAATATCAAATTATGGCGTCATTTAACC
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP019417|2|2|3036644-3038136|CRT
ACGGCTATCCCCGCTGACGCGGGGAACAC	ACGGCAACGGATGCGACCGCCAGCGCGATCCC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACCGATAAACAACCGCATAGCCTCTTTCGTTT
CGATTTATCCCTGCTGGCGCGGGGAACAC	TGCTCAATAACGTCGTAAATAGCGTAAGCTGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TATTTCGCCTTCGGCACTGACGTCACCGTCAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACCGATAAACAACCGCATAGCCTCTTTCGTTT
CGATTTATCCCTGCTGGCGCGGGGAACAC	TGCTCAATAACGTCGTAAATAGCGTAAGCTGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TATTTCGCCTTCGGCACTGACGTCACCGTCAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGTTGCCCGGGCCGATTGAGATCCACAGTCTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTTTTTCGGTCCGCCTCTCCCTGGAATAATCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CTCCCCACGGCACACGGCGTGCGTAGTTTCGA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATGGATGCGAGCGTATCGAGCCAGTCAAGAAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCGGCGACCAGCCGCTCTAACCTCAGCCAGAG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GAGATAATCGGCGTTGTCGGCCACTCATGGCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTATCTCCGTGCCTCCTACCAGCACGGCGCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGCTGGAGCGTATCGAGCATTTTTAAACGCTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CTCACCTGCTCGTCTGTTAGTTTGCTATTGGT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTCTCACGTAAAAATTAAATACCCGATACGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGAGTTACGGGCGGGAACTTTATCATAATGCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGTAGCCAACTGCCCGAAGACATGGAGCGGAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGACGCTCCTTTTCCCGATCAATAGCGACGTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CTGATTGCCAAAATCAAAAAACAGACCGAGTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTGAAAGTGAAATAAATAATTCAAATCCAGTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CTGCGCTCTATCTTGCTTTGTGGAGGGAACGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TAAGGAATATCAAATTATGGCGTCATTTAACC
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP019417|2|2|3036705-3038136|PILER-CR
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACCGATAAACAACCGCATAGCCTCTTTCGTTT
CGATTTATCCCTGCTGGCGCGGGGAACAC	TGCTCAATAACGTCGTAAATAGCGTAAGCTGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TATTTCGCCTTCGGCACTGACGTCACCGTCAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACCGATAAACAACCGCATAGCCTCTTTCGTTT
CGATTTATCCCTGCTGGCGCGGGGAACAC	TGCTCAATAACGTCGTAAATAGCGTAAGCTGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TATTTCGCCTTCGGCACTGACGTCACCGTCAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGTTGCCCGGGCCGATTGAGATCCACAGTCTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTTTTTCGGTCCGCCTCTCCCTGGAATAATCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CTCCCCACGGCACACGGCGTGCGTAGTTTCGA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATGGATGCGAGCGTATCGAGCCAGTCAAGAAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCGGCGACCAGCCGCTCTAACCTCAGCCAGAG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GAGATAATCGGCGTTGTCGGCCACTCATGGCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTATCTCCGTGCCTCCTACCAGCACGGCGCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGCTGGAGCGTATCGAGCATTTTTAAACGCTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CTCACCTGCTCGTCTGTTAGTTTGCTATTGGT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTCTCACGTAAAAATTAAATACCCGATACGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGAGTTACGGGCGGGAACTTTATCATAATGCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGTAGCCAACTGCCCGAAGACATGGAGCGGAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGACGCTCCTTTTCCCGATCAATAGCGACGTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CTGATTGCCAAAATCAAAAAACAGACCGAGTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTGAAAGTGAAATAAATAATTCAAATCCAGTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CTGCGCTCTATCTTGCTTTGTGGAGGGAACGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TAAGGAATATCAAATTATGGCGTCATTTAACC
CGGTTTATCCCCGCTGGCGCGGGGAACAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019417.1\|WP_076741753.1\|3024124_3024676_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
NZ_CP019417.1\|WP_000210863.1\|3040620_3042258_-\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437
NZ_CP019417.1\|WP_000480218.1\|3044314_3044671_-\|type-II-toxin-antitoxin-system-ParD-family-antitoxin	unknown	unknown	gnl\|CDD\|226136
NZ_CP019417.1\|WP_000859612.1\|3044052_3044349_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|226194
NZ_CP019417.1\|WP_076741754.1\|3026240_3028904_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP019417.1\|WP_001660851.1\|3023043_3024102_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|273843
NZ_CP019417.1\|WP_020839101.1\|3051193_3052336_-\|glycerate-kinase	unknown	unknown	gnl\|CDD\|224840
NZ_CP019417.1\|WP_000210451.1\|3042485_3043286_-\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
NZ_CP019417.1\|WP_076741755.1\|3033061_3034861_-\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|182862
NZ_CP019417.1\|WP_000036734.1\|3039239_3040538_-\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NZ_CP019417.1\|WP_000039832.1\|3030513_3031248_-\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NZ_CP019417.1\|WP_001207996.1\|3035748_3036546_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|224158
NZ_CP019417.1\|WP_020437818.1\|3031349_3033062_-\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
NZ_CP019417.1\|WP_076741951.1\|3029347_3030301_+\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
NZ_CP019417.1\|WP_001619835.1\|3024672_3026229_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
NZ_CP019417.1\|WP_000186400.1\|3048393_3051150_+\|two-component-sensor-histidine-kinase-BarA	unknown	unknown	gnl\|CDD\|236848
NZ_CP019417.1\|WP_000046849.1\|3047040_3048336_-\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|237291
NZ_CP019417.1\|WP_001199961.1\|3038432_3039104_-\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
NZ_CP019417.1\|WP_000226841.1\|3044754_3046989_-\|GTP-diphosphokinase	unknown	unknown	gnl\|CDD\|182797
NZ_CP019417.1\|WP_000108313.1\|3035296_3035659_+\|6-carboxytetrahydropterin-synthase-QueD	unknown	unknown	gnl\|CDD\|238264

Protein	Function_ID	Function_description	E-value
NZ_CP019417.1\|WP_076741753.1\|3024124_3024676_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	9.14856e-34
NZ_CP019417.1\|WP_000210863.1\|3040620_3042258_-\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NZ_CP019417.1\|WP_000480218.1\|3044314_3044671_-\|type-II-toxin-antitoxin-system-ParD-family-antitoxin	gnl\|CDD\|226136	COG3609, COG3609, Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain [Transcription].	6.12601e-20
NZ_CP019417.1\|WP_000859612.1\|3044052_3044349_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|226194	COG3668, ParE, Plasmid stabilization system protein [General function prediction only].	1.09008e-13
NZ_CP019417.1\|WP_076741754.1\|3026240_3028904_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	0
NZ_CP019417.1\|WP_001660851.1\|3023043_3024102_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	1.56713e-129
NZ_CP019417.1\|WP_020839101.1\|3051193_3052336_-\|glycerate-kinase	gnl\|CDD\|224840	COG1929, COG1929, Glycerate kinase [Carbohydrate transport and metabolism].	0
NZ_CP019417.1\|WP_000210451.1\|3042485_3043286_-\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	3.42454e-158
NZ_CP019417.1\|WP_076741755.1\|3033061_3034861_-\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
NZ_CP019417.1\|WP_000036734.1\|3039239_3040538_-\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NZ_CP019417.1\|WP_000039832.1\|3030513_3031248_-\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	6.96009e-139
NZ_CP019417.1\|WP_001207996.1\|3035748_3036546_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|224158	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only].	1.04844e-101
NZ_CP019417.1\|WP_020437818.1\|3031349_3033062_-\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
NZ_CP019417.1\|WP_076741951.1\|3029347_3030301_+\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
NZ_CP019417.1\|WP_001619835.1\|3024672_3026229_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
NZ_CP019417.1\|WP_000186400.1\|3048393_3051150_+\|two-component-sensor-histidine-kinase-BarA	gnl\|CDD\|236848	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional.	0
NZ_CP019417.1\|WP_000046849.1\|3047040_3048336_-\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|237291	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD.	0
NZ_CP019417.1\|WP_001199961.1\|3038432_3039104_-\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	1.43874e-155
NZ_CP019417.1\|WP_000226841.1\|3044754_3046989_-\|GTP-diphosphokinase	gnl\|CDD\|182797	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional.	0
NZ_CP019417.1\|WP_000108313.1\|3035296_3035659_+\|6-carboxytetrahydropterin-synthase-QueD	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	2.78454e-58

>NZ_CP019417.1|WP_001207996.1|3035748_3036546_-|MBL-fold-metallo-hydrolase
MALRIRVLLENHKGAGADKSLKARPGLSLLVEDESTSILFDTGPDGSFMQNALAMGIDLSDVSAVVLSHGHYDHCGGVPWLPDNSRIICHPDIARERYAAMTFLGITRKIKKLSCEVDYSRYRMMYTRDPLPIGENFIWSGEIPVVAPEAYGIFGGHDAEPDSILDEGVLIYQSTKGLVIITGCGHRGIANIVRHCQNITGIKRIYALVGGFHLRCASPFTLWRVRRFLQAHKPEKLCGCHCTGAWGRLWLPEITAPATGDVLRF
>NZ_CP019417.1|WP_000108313.1|3035296_3035659_+|6-carboxytetrahydropterin-synthase-QueD
MSTTLYKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFADLKAAFKPTYDRLDHYYLNDIPGLSNPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCVYRGE
>NZ_CP019417.1|WP_076741755.1|3033061_3034861_-|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit
MTTPAPLTGLLPLNPEQLARLQAATTDLTPEQLAWVSGYFWGVLNPRSGAVAVTPAPEGKMPGVTLISASQTGNARRVAEALRDDLLAANLNVTLVNAGDYKFKQIASEKLLVIVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDVLKSRAPVAAPSQSVATGSVNDIHTSPYTKDAPLAATLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVDGKTLPLAEALEWHFELTVNTANIVENYATLTRSESLLPLVGDKAQLQHYAATTPIVDMVRFSPAQLDAQALIDLLRPLTPRLYSIASAQAEVESEVHITVGVVRYDIEGRARAGGASSFLAGRVEEEGEVRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAAEGVEGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLSRIDLAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDARRMAADVEKALLEVIAEFGGMDLESADEYLNELRVERRYQRDVY
>NZ_CP019417.1|WP_020437818.1|3031349_3033062_-|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGLETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDKWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQKAKIETLARDHGLMNAVKPQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGNRIGTRIPRMYQENITEPDILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>NZ_CP019417.1|WP_000039832.1|3030513_3031248_-|phosphoadenosine-phosphosulfate-reductase
MSKLDLNALNDLPKVDRVLALAETNAQLETLTAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELKAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>NZ_CP019417.1|WP_076741951.1|3029347_3030301_+|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGAKMTWHPELLQESISTLRKEVTGNAQIKTAVYEMMRPAEAPDHPLVEWQDSLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHTYSPFSEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLV
>NZ_CP019417.1|WP_076741754.1|3026240_3028904_-|CRISPR-associated-helicase/endonuclease-Cas3
MSIYHYWGKSRRGETDGGDDYHLLCWHSLDVAAVGYWMVINNIYFIDHYLKKLGIQDKEQAAQFFAWILCWHDIGKFAHSFQQLYRHEALNIFNEPTRHYEKIAHTTLGYMLWNSWLSECPELFPPSSLSVRKSKRVMALWMPVTTGHHGRPPEAIQELDHFRQQDKDAARDFLLRIKALFPLITLPEAWDEDEGIDQFQQLSWFISAAVVLADWTGSASRYFPRTAEKMPVDTYWQQALAKAQTAITLFPSAANVSAFTGIETLFPFIQHPTPLQQKALELDINVDGAQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLYFGLPTMATANAMFERMANTWLALYQPDSRPSLILAHSARRLMDRFNQSIWSVTLSGTEEPDEAQPYSQGCAAWFADSNKKALLAEVGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAWMSRILEGLIERQASNGNATILLSATLSQQQRDKLVAAFSRGVRRSVQAPLLGHDDYPWLTQVTQTELISQRVDTRKEVERCVDIGWLHSEEACLERIGEAVEKGNCIAWIRNSVDDAIRIYRQLQLSKVVATENLLLFHSRFAFHDRQRIESQTLNLFGKQSGAQRAGKVIIATQVIEQSLDIDCDEMISDLAPVDLLIQRAGRLQRHIRDRNGLVKKSGQDERETPVLRILAPEWDDAPRENWLSSAMRNSAYVYPDHGRMWLTQRILREQGTIRMPQSARLLIESVYGEDVNMPVGFAKTEQLQEGKVHCDRAFAYQMLLNFAPGYCAEISDSLPEKMSTRLAEESVTLWLAKIVDGVVTPYASGEHAWEMSVLRVRQSWWNKHKDEFEKLDGEPLRKWCAQQHQDKDFATVIVVTDCAACGYSANEGLIGMMGE
>NZ_CP019417.1|WP_001619835.1|3024672_3026229_-|type-I-E-CRISPR-associated-protein-Cse1/CasA
MDNFSLLTTPWLPVRFKDGSTGKLAPVNLADENVVDIAATRADLQGAAWQFLLGLLQCSIAPKRYKNWEDIWFDGLHADALHKALAQLEHAFQFGAETPSFMQDFEPLTGEKVSMASLLPETPGAQTTKFNKDHFIKRGVTERFCPHCAALALFSLQLNAPSGGKGYRTGLRGGGPLTTLVELQEYQGERQTPLWRKLWLNVMPQDTADLPLPDQCDATVFPWLAATRTSEQANAVTTPEQVNKLQAYWGMPRRIRLDFATLQSGCCDICGAESDELLGFMTVKNYGVNYDGWRHPLTPYRAPVKDQNAFFSVKPQPGGLIWRDWLGLSQNNQTEANYESPAQVVKVFNARSLTDVKAGIWGFGADFDNMKIRCWYEHHFPLLMTEGLIPDLRKAVQTAARLLSLLRSALKEAWFADAKGARGDFSFIDIDFWNLTQGRFLNLIHDLENGHKPDERLNKWQRELWLFTRHYFDDHVFTNPYESSDLERIMTARKKYFTTSAEKQSAKAAKAKKQEAAE
>NZ_CP019417.1|WP_076741753.1|3024124_3024676_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSVVTKDDKATLRQWHEELQEKRGLRASLRRSKTVNDACLAEGLHSLLMQTHSLWKNKAPWNVTALAITAALAAHIKFIDEQKSFAAQLGQKKGGDTPVMSKLRFSHLLAVKTPDELLRQLRRAVKLLDGSVNLFSLADDIFCWCQEQNDLLNHHRRQQRPTEFLRIRWALEYYQAGDGDTDN
>NZ_CP019417.1|WP_001660851.1|3023043_3024102_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRISSQSLKRAWRTSELFEQALAGHIGIRTGRIAREAAQILVDSGIDAKKAVEYVKNIANCFGKVKEDKKPKEDLTNAETEQLVHISPAEFEAVKALARRLAEEKRPATEEEAELLRHDRMAVDIAMFGRMLAKKTDFNVEAACQVAYAFGVSETIIEDDFFTAVDDLRQASAEDAGAGHLGETGFGSALFYTYICIDKDLLVKNLNDNEELANKTLRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTDQLNVAVKRITSLHKNMNKVYGQRTDTASFDVMNQQGSMEDVLDFICA
>NZ_CP019417.1|WP_001199961.1|3038432_3039104_-|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILAKTKESDKWGAASSEDLLAVINRQGYTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA
>NZ_CP019417.1|WP_000036734.1|3039239_3040538_-|phosphopyruvate-hydratase
MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVGAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTENKSNFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKGKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>NZ_CP019417.1|WP_000210863.1|3040620_3042258_-|CTP-synthase-(glutamine-hydrolyzing)
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQLAVDIGREHALFMHLTLVPYLAAAGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISMKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIYEEANPAGEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVTVNIKLIDSQDVETRGVEILKDLDAILIPGGFGYRGVEGKIATARYARENNIPYLGICLGMQVALIEFARNVAGMDNANSTEFVPDCKYPVVALITEWRDEDGNVEVRSEKSDLGGTMRLGAQQCQLSDDSLVRQLYGASTIVERHRHRYEVNNMLLKQIEAAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAANEHQKRQAK
>NZ_CP019417.1|WP_000210451.1|3042485_3043286_-|nucleoside-triphosphate-pyrophosphohydrolase
MTTNHQIDRLLTLMQRLRDPENGCPWDKEQTFASIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFGELSADNSEEALVRWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCSNVGFDWTTLGPVVDKVYEEIDEVMFEARQAVVDQAKLEEEMGDLLFATVNMARHLGTKAELALQKANDKFERRFREVERIVAARGLEMTGVDLETMEEVWQEVKRQEIDL
>NZ_CP019417.1|WP_000859612.1|3044052_3044349_-|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MKTVKLTPKASEDLENIWHYGWQHFGEIQADRYINHLSEIFSIMSANNIGTPRPELGEYIYALPFERHIIYFIQSVTEVIVIRILSQNQDAGKHVNWL
>NZ_CP019417.1|WP_000480218.1|3044314_3044671_-|type-II-toxin-antitoxin-system-ParD-family-antitoxin
MFLTYISFPVYSYVRFILTVEAVMARTMTVDLGDELREFIESLIESGDYRTQSEVIRESLRLLREKQAESRLQALRELLAEGLNSGEPQAWEKDAFLRKVKTGMIKPDENGKINAKGQ
>NZ_CP019417.1|WP_000226841.1|3044754_3046989_-|GTP-diphosphokinase
MVAVRSAHINKAGEFDPKKWIASLGISSQQSCERLAETWAYCLQQTQGHPDADLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSIVTLIHGVRDMAAIRQLNATHNDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKEAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPAEYKRIAKLLHERRLDREHYIEEFVGHLRAEMKNEGVQAEVYGRPKHIYSIWRKMQKKHLAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAHWKYKEGAASGGVRSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQVEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNILAGRQILDDELAHLGISLKEAEKHLLPRYNFNELEELLAAIGGGDIRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKTYAPQNRRKDDGRVVVEGVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPERIVEAVWGESYSAGYSLVVRVQANDRSGLLRDITTILANEKVNVLGVASRSDIKQQIATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLHGG
>NZ_CP019417.1|WP_000046849.1|3047040_3048336_-|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MAQFYSAKRRVTTRQIITVKVNDLDSFGQGVARHNGKALFIPGLLPEESAEVIITEDKKQFARARVSRRLNDSPERETPRCPHFGVCGGCQQQHVSIALQQRSKSAALARLMKHEVNDIIAGAPWGYRRRARLSLNCPPDKPLQMGFRKAGSSDIVNVEQCPVLAPQLAALLPRIRACLASLHGTRHLGHVELVQAGSGTLMILRHTAPLSAADKEKLERFSHSEGLSLFLAPFSEILETVSGEAPWYDSHGLRLAFSPRDFIQVNEAVNQQMVARALEWLDVRAEDRVLDLFCGMGNFTLPLATRAASVIGVEGVPALVEKGRENAIRNGLHNVTFFHENLEEDVTKQPWAKNGFDKVLLDPARAGATGVMRHIIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLESMVLFERM
>NZ_CP019417.1|WP_000186400.1|3048393_3051150_+|two-component-sensor-histidine-kinase-BarA
MTNYSLRARMMILILAPTVLIGLLLSIFFVVHRYNDLQRQLEDAGASIIEPLAVSSEYGMNLQNRESIGQLISVLHRRHSDIVRAISVYDDHNRLFVTSNFHLDPSQMQLPAGAPFPRRLSVDRHGDIMILRTPIISESYSPDESAIADAKNTKNMLGYVALELDLKSVRLQQYKEIFISSVMMLFCIGIALIFGWRLMRDVTGPIRNMVNTVDRIRRGQLDSRVEGFMLGELDMLKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNVIGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNVIIDGPSTACLAGKRLAYVEPNATAAQCTLDLLSDTPVEVVYSPTFSALPLAHYDIMILSVPVTFREPLTMQHERLAKAASMTDFLLLALPCHAQINAEKLKQGGAAACLLKPLTSTRLLPALTEYCQLNHHPEPLLMDTSKITMTVMAVDDNPANLKLIGALLEDKVQHVELCDSGHQAVDRAKQMQFDLILMDIQMPDMDGIRACELIHQLPHQQQTPVIAVTAHAMAGQKEKLLSAGMNDYLAKPIEEEKLHNLLLRYKPGANVAARLMAPEPAEFIFNPNATLDWQLALRQAAGKPDLARDMLQMLIDFLPEVRNKIEEQLVGENPNGLVDLVHKLHGSCGYSGVPRMKNLCQLIEQQLRSGVHEEELEPEFLELLDEMDNVAREAKKILG
>NZ_CP019417.1|WP_020839101.1|3051193_3052336_-|glycerate-kinase
MKIVIAPDSYKESLSALEVATAIEQGFREIWPDADYLKLPLADGGEGTVEAMVEATAGRIVHVEVTGPLGHRVNAFYGLSGDARSAFIEMAAASGLEQVPPAQRDPLKTTSWGTGELIRHALDAGVEHIIIGIGGSATNDGGAGMVQALGARLRDAQGNDIAQGGIGLETLASIDISGLDKRLSACHIEVACDVTNPLTGKEGASAVFGPQKGATPEMIERLETALTRYAHLIARDLHVDVLDLAGGGAAGGMGAALYAFCGAQLRRGIEIVTDALHLEACLADADLVITGEGRIDSQTIHGKVPIGVANIAKRYNKPVIGIAGSLTADVSVVHEHGLDAVFSVIYTICTLEDALKNASENVRMTARNVAATLKAGQQLR

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Crispr_ID: NZ_CP019417_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP019417_3

4565182-4565276

Orphan

Consensus_repeat	Method
TGCGGGGCGCAGCAAGTACAAAAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP019417_3

>merge|NZ_CP019417|3|4565182-4565276|CRISPRCasFinder
TGCGGGGCGCAGCAAGTACAAAAAATGAGCAGAACTACTGGGCGCAATAGTGGTTAAAAAATGACCTTGTTGCGGGGCGCAACAAGTACAAAAAA

>NZ_CP019417|3|3|4565182-4565276|CRISPRCasFinder
TGCGGGGCGCAGCAAGTACAAAAAA	TGAGCAGAACTACTGGGCGCAATAGTGGTTAAAAAATGACCTTGT
TGCGGGGCGCAACAAGTACAAAAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019417.1\|WP_076741895.1\|4554109_4555291_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|222980
NZ_CP019417.1\|WP_076741897.1\|4566215_4568225_+\|DNA-topoisomerase-III	unknown	unknown	gnl\|CDD\|236078
NZ_CP019417.1\|WP_000077899.1\|4563000_4563597_+\|DUF2857-domain-containing-protein	unknown	unknown	gnl\|CDD\|378591
NZ_CP019417.1\|WP_076741898.1\|4571009_4572359_+\|TcpQ-domain-containing-protein	unknown	unknown	gnl\|CDD\|163460
NZ_CP019417.1\|WP_000203356.1\|4558853_4560221_+\|replicative-DNA-helicase	unknown	unknown	gnl\|CDD\|273206
NZ_CP019417.1\|WP_001287846.1\|4561925_4562180_+\|TraR/DksA-C4-type-zinc-finger-protein	unknown	unknown	gnl\|CDD\|184270
NZ_CP019417.1\|WP_000540084.1\|4572360_4572804_+\|type-IV-pilus-biogenesis-protein-PilM	unknown	unknown	gnl\|CDD\|369356
NZ_CP019417.1\|WP_000550614.1\|4557942_4558857_+\|ParA-family-protein	unknown	unknown	gnl\|CDD\|224113
NZ_CP019417.1\|WP_000527984.1\|4569417_4569621_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019417.1\|WP_000073295.1\|4560217_4561933_+\|ParB-family-protein	unknown	unknown	gnl\|CDD\|213858
NZ_CP019417.1\|WP_001178480.1\|4563596_4563827_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019417.1\|WP_000154859.1\|4563905_4565138_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|379352
NZ_CP019417.1\|WP_001137388.1\|4572823_4574497_+\|PilN-family-type-IVB-pilus-formation-outer-membrane-protein	unknown	unknown	gnl\|CDD\|274177
NZ_CP019417.1\|WP_000818555.1\|4565479_4566202_+\|TIGR03761-family-integrating-conjugative-element-protein	unknown	unknown	gnl\|CDD\|274771
NZ_CP019417.1\|WP_000168256.1\|4569638_4570190_+\|single-stranded-DNA-binding-protein	unknown	unknown	gnl\|CDD\|236362
NZ_CP019417.1\|WP_000127558.1\|4568853_4569345_+\|DUF3577-domain-containing-protein	unknown	unknown	gnl\|CDD\|371899
NZ_CP019417.1\|WP_076741896.1\|4556343_4557636_-\|integrase-arm-type-DNA-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|170049
NZ_CP019417.1\|WP_000005470.1\|4562172_4562916_+\|DUF2786-domain-containing-protein	unknown	unknown	gnl\|CDD\|378525
NZ_CP019417.1\|WP_001144085.1\|4570268_4570511_+\|DUF4160-domain-containing-protein	unknown	unknown	gnl\|CDD\|379344
NZ_CP019417.1\|WP_000155614.1\|4570494_4570743_+\|DUF2442-domain-containing-protein	unknown	unknown	gnl\|CDD\|378424

Protein	Function_ID	Function_description	E-value
NZ_CP019417.1\|WP_076741895.1\|4554109_4555291_-\|hypothetical-protein	gnl\|CDD\|222980	PHA03095, PHA03095, ankyrin-like protein; Provisional.	2.32584e-16
NZ_CP019417.1\|WP_076741897.1\|4566215_4568225_+\|DNA-topoisomerase-III	gnl\|CDD\|236078	PRK07726, PRK07726, DNA topoisomerase 3.	0
NZ_CP019417.1\|WP_000077899.1\|4563000_4563597_+\|DUF2857-domain-containing-protein	gnl\|CDD\|378591	pfam11198, DUF2857, Protein of unknown function (DUF2857). This is a bacterial family of uncharacterized proteins.	7.68619e-67
NZ_CP019417.1\|WP_076741898.1\|4571009_4572359_+\|TcpQ-domain-containing-protein	gnl\|CDD\|163460	TIGR03748, conj_PilL, conjugative transfer region protein, TIGR03748 family. This model describes the conserved N-terminal region of a variable length protein family associated with laterally transfered regions flanked by markers of conjugative plasmid integration and/or transposition. Most members of the family have the lipoprotein signal peptide motif. A member of the family from a pathogenicity island in Salmonella enterica serovar Dublin strain was designated PilL for nomenclature consistency with a neighboring gene for the pilin structural protein PilS. However, the species distribution of this protein family tracks much better with markers of conjugal transfer than with markers of PilS-like pilin structure. [Mobile and extrachromosomal element functions, Plasmid functions].	1.44093e-51
NZ_CP019417.1\|WP_000203356.1\|4558853_4560221_+\|replicative-DNA-helicase	gnl\|CDD\|273206	TIGR00665, DnaB, replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of > 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites. [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_CP019417.1\|WP_001287846.1\|4561925_4562180_+\|TraR/DksA-C4-type-zinc-finger-protein	gnl\|CDD\|184270	PRK13715, PRK13715, conjugal transfer protein TraR; Provisional.	1.48906e-10
NZ_CP019417.1\|WP_000540084.1\|4572360_4572804_+\|type-IV-pilus-biogenesis-protein-PilM	gnl\|CDD\|369356	pfam07419, PilM, PilM. This family contains the bacterial protein PilM (approximately 150 residues long). PilM is an inner membrane protein that has been predicted to function as a component of the pilin transport apparatus and thin-pilus basal body.	1.26728e-19
NZ_CP019417.1\|WP_000154859.1\|4563905_4565138_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|379352	pfam13730, HTH_36, Helix-turn-helix domain.	3.52698e-06
NZ_CP019417.1\|WP_000073295.1\|4560217_4561933_+\|ParB-family-protein	gnl\|CDD\|213858	TIGR03764, ICE_PFGI_1_parB, integrating conjugative element, PFGI_1 class, ParB family protein. Members of this protein family carry the ParB-type nuclease domain and are found in integrating conjugative elements (ICE) in the same class as PFGI-1 of Pseudomonas fluorescens Pf-5.	1.71306e-149
NZ_CP019417.1\|WP_000127558.1\|4568853_4569345_+\|DUF3577-domain-containing-protein	gnl\|CDD\|371899	pfam12101, DUF3577, Protein of unknown function (DUF3577). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 143 to 307 amino acids in length.	1.66989e-61
NZ_CP019417.1\|WP_000550614.1\|4557942_4558857_+\|ParA-family-protein	gnl\|CDD\|224113	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning].	5.58345e-22
NZ_CP019417.1\|WP_001137388.1\|4572823_4574497_+\|PilN-family-type-IVB-pilus-formation-outer-membrane-protein	gnl\|CDD\|274177	TIGR02520, putative_Type_IV_pilus_protein, type IVB pilus formation outer membrane protein, R64 PilN family. Several related protein families encode outer membrane pore proteins for type II secretion, type III secretion, and type IV pilus formation. This protein family appears to encode a secretin for pilus formation, although it is quite different from PilQ. Members include the PilN lipoprotein of the plasmid R64 thin pilus, a type IV pilus. Scoring between the trusted and noise cutoffs are examples of bundle-forming pilus B (bfpB). [Cell envelope, Surface structures, Protein fate, Protein and peptide secretion and trafficking].	2.07533e-127
NZ_CP019417.1\|WP_000818555.1\|4565479_4566202_+\|TIGR03761-family-integrating-conjugative-element-protein	gnl\|CDD\|274771	TIGR03761, ICE_PFL4669, integrating conjugative element protein, PFL_4669 family. Members of this protein family, such as PFL4669, are found in integrating conjugative elements (ICE) of the PFGI-1 class as in Pseudomonas fluorescens.	3.82803e-85
NZ_CP019417.1\|WP_000168256.1\|4569638_4570190_+\|single-stranded-DNA-binding-protein	gnl\|CDD\|236362	PRK09010, PRK09010, single-stranded DNA-binding protein; Provisional.	4.41446e-95
NZ_CP019417.1\|WP_076741896.1\|4556343_4557636_-\|integrase-arm-type-DNA-binding-domain-containing-protein	gnl\|CDD\|170049	PRK09692, PRK09692, integrase; Provisional.	4.06497e-71
NZ_CP019417.1\|WP_000005470.1\|4562172_4562916_+\|DUF2786-domain-containing-protein	gnl\|CDD\|378525	pfam10979, DUF2786, Protein of unknown function (DUF2786). This family of proteins has no known function.	3.83726e-11
NZ_CP019417.1\|WP_001144085.1\|4570268_4570511_+\|DUF4160-domain-containing-protein	gnl\|CDD\|379344	pfam13711, DUF4160, Domain of unknown function (DUF4160).	2.05304e-15
NZ_CP019417.1\|WP_000155614.1\|4570494_4570743_+\|DUF2442-domain-containing-protein	gnl\|CDD\|378424	pfam10387, DUF2442, Protein of unknown function (DUF2442). This family of bacterial and fungal proteins has several members annotated as being putative molybdopterin-guanine dinucleotide biosynthesis protein A; however this could not be verified. Hence the function is not known. This family also includes the DUF3532 that was found to be related and was merged into this family. Members of this family also fall into the NE0471 N-terminal domain-like superfamily, a family of proteins with a unique fold in SCOP:143880.	2.36359e-20

>NZ_CP019417.1|WP_000154859.1|4563905_4565138_+|helix-turn-helix-domain-containing-protein
MTIPADSIVAHTLSRMQRSLERRTDTGDVGQERSGLLFMGNVHDAFPRQLFLDTRLSPLDKTAWVMIRLYAQQNEGAVFPTYDELQVQLASAHSEKASRDTVSRVLLMLRLTGWLSLCKRVRDDHGRVRGNIYAQHDEPLGYRDAETFDPGWLTLVEESCLSRNKAVRMTALVVVNDILHDPGMRHRHSRLAIIESRLSAPATPEQMARQRQAVQPSPKSGLSKKRIKNSPNSLSPENGLSSLKSDNSQSPENGLSKKSRSYAGVRNSDCNVRSFTHSVNKKTYVPCGEQFLPDDFLNALNTEDRQMLSTQMASLPETMAKALADMLREQQALGRLNNPVGWMFSMLRRARSGELKISEDTATASSGGTISRPVESRTVPTADVPVQPAKRPSQGQVRAMIAAIRQQVQK
>NZ_CP019417.1|WP_001178480.1|4563596_4563827_+|hypothetical-protein
MQMTDFSSRQYVSPSVRRRAQRLFSAVCCGEKVFRRLTMNGYLKIDVGPFWRILSKDGGKHWWLMDHETYNREIRR
>NZ_CP019417.1|WP_000077899.1|4563000_4563597_+|DUF2857-domain-containing-protein
MSQHNLSQATTAILSSLLMDVKNGNIRRCESLGMSLEEIRALSQLSLDELHYLSQSHVSVLDVSLNHENFWLMLNQARNEQKRMLMIDRALELGGSMELIDKYFGLSPSEVSARRRLMGIESRQGRTQSLTEPQDSALWIEWKAAGLSSPDSHQALEAMMLAAEQHGLSLTAVWSRVCQWCRETTPSRKSESQQRKEA
>NZ_CP019417.1|WP_000005470.1|4562172_4562916_+|DUF2786-domain-containing-protein
MSETTKVIARIRRLMALGTRNSNPHEAARAVALAQRLMQRHGLTPDMLSLHDIQESVCQNLTSNAEKVPAWLSSLATVVCMATGCRCWFGWHIHTSCSGVKSVRRSLHFYGFSGRAEVALYIYTVLQRQLRADTDGQIAGYRKRRILKNTLRRRADQFREGWVSGVWQVLQSFAPSECENSMLQRWLAQRHTGDTLGTVNVRVAGKCRGDRAARVAGWLAGRDTEVHQGLTGAQAQQQITAGGCTHE
>NZ_CP019417.1|WP_001287846.1|4561925_4562180_+|TraR/DksA-C4-type-zinc-finger-protein
MSEDLNDEMAQASTAIFTQRGINAIRAKVHSLRPSKEICECCGADIPAARQLAVPGVELCAACQDVKEKQDVHRAAGCRGLHHV
>NZ_CP019417.1|WP_000073295.1|4560217_4561933_+|ParB-family-protein
MSNVRSLNLGDAMLQRGKSPAQAADNNTPTVTQPVNEMAMVLTLDQLRPNPDNPRKGRNPRFEEIKASVRARGLDSIPKVTRDPDGDDVYIFSDGGNTRYQILCDLWQETGDERFYRVHTIFKPWPGRLKCLVGHLAENEVRGDLTYIEKAFGVHKARVIYEEQLGRSVTLRELSDLLGKEGYPIDNSSVSRMEDTLNYLYPHMPQLLESGMSRGQATPLLSLRSSAMKVWKSFSGDVNPECSLDDVFGAVCRCFDEPESYALDIFRDEFIGQLVKALPHPSLNYDRWLIELDPREQKRREQFGEPPPLPAPTPASEQSGGRERTTPPVTTLPADTSSQPPVTGLRSGTLTTPGRPEAVPELQDNTALPGGMSVGSEPRREVQNDLFGGNPVITGQTENPDNDGEWQFKSDVNANALVSAFGEQDETSTPSVSSVAFAATGLEPVNDIWHISALQDDIEHLQDMAYRLTFEIAEAMGCADCVREDKDHHSTGFSISENASEFTLFLAGLSGSLPNKQFNMFMFCLNFFGSQEPADTAVFDDVTVVKTMRLIRVIRRLRELQRLAVKGGENV
>NZ_CP019417.1|WP_000203356.1|4558853_4560221_+|replicative-DNA-helicase
MTSNNRRNVSGLFSQDAEQSVIGGLMLDNDCWDEVALRLDTDDFYFKVHQVIFHEMARLVAAGRPIDLITLAESIENRGKDALEQLGGFAYLAELSKNTPSAANIVAYCDIVARYSQGRQLVAIGAEITETVKASGADIGAVMETAEQKITRLAERSEPQQAVTLLDGMEKLLTELERRCNVPDGITGTPTGFEDFDAMTSGLQAADLILIAARPSMGKTAFLISLILNSLLKKADTHAQFYSLEQPTEQILMRMVASLGSVDLTHLKNGQMDDEDWARVSNASSLLMGDLKDRLIIDDTGSLTPAMLRIRARRNARRYGHPSVIGLDYLQLMRCPDQENRTQEIAEISRSLKALAKEMGCPVVALSQLNRQLESRADKRPNNGDLRDSGALEQDADVIVFIYRDEVYHENTEDKGVAEIIVSKQRQGPIGTIRLQYEGRYTRFSANPGHTGRFA
>NZ_CP019417.1|WP_000550614.1|4557942_4558857_+|ParA-family-protein
MHLQSIDYPTLGVKPRIIPVVSTKGGEGKSTQSANLAGFLADAGIKTLLIDGDHAQPTASSIFPLEYEAPGGLYELLMQTVDLSNPDNLISRTSINNLDIIVSNDPRNFLPTAMLNAPDGRVRLRNALSHPLFNSYGVIIVDSQGSRSVMSELIILASTGTMVGIAKPILPDVREFMRGTVALMEELLPYCAFGIQLPVTKLLINCMEYDNLSVETLAEVKAIVEDKRYSAHADKIHIDLLETCIYDLTVYVLGHVKGVPVHRLEKNTRRKSDSAFTSMYQLACELFPEWKTNFDALANAGGEE
>NZ_CP019417.1|WP_076741896.1|4556343_4557636_-|integrase-arm-type-DNA-binding-domain-containing-protein
MPLTDIKVKNARPSEKPVKLTDGQGLYLLVHPSGSKYWQLAYRFGGKQKVFSIGVYPLISLSEARKKRDEARKLIAEGTDPVQQKKLARIQATGTLTFESVAREWHKKLSVSERWSNSHSERVLNSLINHVFPSTGHHDITRLSTRDLLVPIRAAEAAGHAETAARLKQRITAIMRYAVQEAIITHNAALDLEGAISAPVRAHRPALELDAITDLLNRIEGYKGRRLTVLAIRLTLLVFIRSSELRFARWPEIDFKNALWIIPPEREEIVDVRFSGRGSKMRTPHYVPLSRQAVEILEELKTLSYDATDGQGLIFVGCHSIHKPMSENTVNKALRTMGYDTKSDICGHGFRTMACSSLVESGKWSEDAIERQMSHQERNQVRAAYIHKAKHLEQRRLMLQWWADFLDANKNGVVRPFEFSLSAIAIPLNK
>NZ_CP019417.1|WP_076741895.1|4554109_4555291_-|hypothetical-protein
MNQKSQNKNTQNLFKIKSPEELKKLLKAGVDINTLNSSNQNALFHCRYPELMKAMIKAGIHINHTDTFNRNALFYAPSPETINALTENGIDINRTDTLGRNALFYTRDAKSVRLLVKKGIPVNHTDLEDKNALFFTSSESSARELLDSGVDINHTDNTGSNALFYTFEPDVRRILIQRGINVNQRNIYSNNAVNITDINADLLNDFFAVGLDPDIQDYYGNSLIFYPYDKAITDILIKNGCDINRVNNNGETVFEYIQTMLFSNHQLDECLSVLTHYLHLTKARPLIFNRLTFGCLELIKTLERLNIDYKINERCVVRYPNKDIKRFITEAQKIIGISNITLCSWYDTPLVNLKNKEIIKWFIRNNVKVNINDIEDQDIRTEILTYSTLRQIK
>NZ_CP019417.1|WP_000818555.1|4565479_4566202_+|TIGR03761-family-integrating-conjugative-element-protein
MAEKNEKRTGALQSEMTIALHTNYAIGLWQGRQPEKQDGEKPARHGIIGMPQFFHRATLINQDSLRNNPWADVAMFNLEEKIKVASDSMTALIQQLDAEMSMLPPGITLTEVASVEPLDIQVFTRTPLGYRCVFLLVGFDQFAKKALQASHYGLITRSRRDHHLSEGGRLIRQVYGSVLSYRRIDATRFDAVENNETWKQACEVAGEPDLSVLLGEKRSAFSPPVNESSVNLLRMRYRAA
>NZ_CP019417.1|WP_076741897.1|4566215_4568225_+|DNA-topoisomerase-III
MRLFICEKPSQGRDLANVLGATRRGDGFLTGPGVTVTWAVGHLLETAPPEAYGQQYGKPWSLSALPILPSPWQVVVKKETKSQFKVIERLLRQVDDVVISTDADREGEVIARELLEYCRWDGPVQRLWLSALDEMSIRAALQDLRPGAETLGMYHAGLGRARADWLIGMNLSRLYTLLAVQSGFDGVISVGRVQTPTLALVVRRDREIATFVPKPFWQVKALLSAGGRTFPAQWVPAKVYTDEEKRCVHQNIAQQVAHLCRQAGAATVTECETKREKAAAPLAFSLGTLQQACGLLWDMSPQQVLDTAQSLYEKHKATTYPRTDCGYLPESMREEIPSVLSAIGLSDPECSSLLSGLNTSFVSRIWNDKKITAHHGIIPTRNAFKFSALSEAERRVYTLIRRNYLAQFLPLHESDITRLQFDIGGQLFRTTGRTEIVMGWKVLFSKEEEDSAGDDDLSIELPPLRKGDRCGVNGAEVVQQMTRPPAHYTFATLIGAMMNASAFVTDIALRKVLKDNAGLGTEATCAGIVEQLLNRRFIVRKGKQLRATDLGADVIDALPSQLTDPGMTALWEQALDEVAEGRLTLNDFLQRQVGWTRNLVSMGGQQRVSIRIPPTPSCPLCGGKTRLKKGQKGEFWGCTRYPDCKGIINNDTQKRKSARSSKAVKPKNN
>NZ_CP019417.1|WP_000127558.1|4568853_4569345_+|DUF3577-domain-containing-protein
MTATTTASSSTTSSSASQKKEYFNLNVSGIGYLSSIRRVQGQNGEFTCAVINALTGPTDNASYTRFDVTVAGPEATKLINRCQKAVDEEEKVLLGFVLSGLKADVFTLQSGEHSGESRPSLKVRLIKVEFIKKGQEVVYTAPNASQTPEQGSAAPKDYDPNSF
>NZ_CP019417.1|WP_000527984.1|4569417_4569621_+|hypothetical-protein
MGNPFGLLASEAGHQLQIQVLSSQRGFYIGTANEMGPVSRESVEYYKTSLQADIALEKGEWTQREYD
>NZ_CP019417.1|WP_000168256.1|4569638_4570190_+|single-stranded-DNA-binding-protein
MASRGINKVILVGHLGQDPEVRYIPNSSTAVTGFSIATSESWRDKQSGDMKEKTEWHRVVLFGKLAEIAGEYLKKGSQVYIEGQLRTRKWTDDGGVERWTTEVVVGVNGTMQMLGSRNAPAGTGNAQQPGQAQGGWGQPQQPQPQQSAAPHIPANEPPMDFDDDIPFLGHGYGICRKAIYAIS
>NZ_CP019417.1|WP_001144085.1|4570268_4570511_+|DUF4160-domain-containing-protein
MPVILRINGFKFFFYSNEGNPLEPAHIHVRNADGEAKFWLEDEVKLSRNDGFDARTLKELTKMVQHNQTMFVEAWNDYFS
>NZ_CP019417.1|WP_000155614.1|4570494_4570743_+|DUF2442-domain-containing-protein
MTISAKNVRFDETTMWVELNDGRVMGVPIAWFPRLLNATDKERNDYELSKRGIHWDNLDEDISVDGLLAGRGDVTHVPHRVA
>NZ_CP019417.1|WP_076741898.1|4571009_4572359_+|TcpQ-domain-containing-protein
MVKINLQTRYRLGAITLCLLAAGCTDFSSRSEPMSRLQGSPRVQDLYQNRSPEVVRYDRYTLASTRPVDAQRDPLNQIIDIKMPLQMVNTIGEGMRYVMLESGYSLCSGEPGVFSELFVKPLPAVQRSLGPVKLGDALQILAGPAWRMRVDDLNREICFVQRDEYRHLALSTTGPLQASVASQGTGKSASTGTLLNSSKGLSGTGNNSYPLPPARPESSILSPGTPKVTSQAVSPLSVATTAKTPRNPFSASEPGEKSTVPVQKTQAGPAAKLTSGKVKPSTELAPAPAPSALSVASAPLNKAALGVPLASSGAVKPGGTVQNSNPPSTVISRTAPVSGKTVFTPGALLSSLPDGQAWTAQAGTTLKETLIQWATSVRCESGSSPTWVVIWPTPVNYRIDVPFTLRGNFESIIVQLFRLYRPAEKPLYAAPNRLQCLVFVDDKPIQDGK
>NZ_CP019417.1|WP_000540084.1|4572360_4572804_+|type-IV-pilus-biogenesis-protein-PilM
MGYALPVFALCLVIILIAGDAQHHSSEHVRLALQQTQPEQLAADMLRTADVVNNWRHGRSITDGPVSTALTGMVPLPDSRIKSIIQNGRLWIWVPETDGVYAALRARSVSSALALTVSGGRLRMADGTDMNLSLPSGVTEGSIVYLN
>NZ_CP019417.1|WP_001137388.1|4572823_4574497_+|PilN-family-type-IVB-pilus-formation-outer-membrane-protein
MPRIPFCLTVLTTAFVLSSCSLNEISKIDKESVGQADTAQRVLQSRQSISQPTVVWMDKPWVNLQPVTPVVSTPDEKNLPPCQITINRPDGISLPELGQRITALCGIRVSITPDAFAALSNVSTGSVVTSQMSGQLPAPDDNGRVPLAQMGATSAQPVSVQPSPALMRGLKFQGDVRDLLDVEASGYGLSWRSDGNGVYFYRQDTRTFQLVILNTKVNSSASINSGSGNQLGSGGGTSGGTSGDISSNQKTDYGMNSDLYDDIRKTIEQMLTPKSGRFWLSAATGTLSVTDTPDVLERIGRYIEYQNKVLSRQVQLNIQIVSVNQTRNEQLGLDWGLVYKSLHNFGATLTGSMANASTSAGSAGISILDTATGNAAKFSGSSLLIKALSEQGNVSMALNQTDPTANLTPVAYQLSNQQGVLTSSSSTATANVGVTSSQTVTTITTGLFMTMLPFIQENGDVQLQFAFSYTSPPQIEKFISRDGNTRNDIPNTSTQGLARKVNLRSGQTLVLTGSEQQNLSANKQGTFTPDNFILGGGQNGTRGRNTLVIMITPVLLR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP019417_1	1.12\|3019800\|32\|NZ_CP019417\|CRISPRCasFinder,CRT,PILER-CR	3019800-3019831	32	KY653119	Morganella phage IME1369_02, complete genome	20307-20338	2	0.938
NZ_CP019417_2	2.2\|3036734\|32\|NZ_CP019417\|CRISPRCasFinder,CRT,PILER-CR	3036734-3036765	32	NZ_CP030204	Salmonella enterica strain SA20083530 plasmid pSA20083530.1, complete sequence	130783-130814	2	0.938
NZ_CP019417_2	2.5\|3036917\|32\|NZ_CP019417\|CRISPRCasFinder,CRT,PILER-CR	3036917-3036948	32	NZ_CP030204	Salmonella enterica strain SA20083530 plasmid pSA20083530.1, complete sequence	130783-130814	2	0.938
NZ_CP019417_1	1.12\|3019800\|32\|NZ_CP019417\|CRISPRCasFinder,CRT,PILER-CR	3019800-3019831	32	NC_014838	Pantoea sp. At-9b plasmid pPAT9B01, complete sequence	243409-243440	4	0.875
NZ_CP019417_2	2.1\|3036673\|32\|NZ_CP019417\|CRISPRCasFinder,CRT	3036673-3036704	32	NZ_CP024424	Paracoccus yeei strain TT13 plasmid pTT13-2, complete sequence	112052-112083	5	0.844
NZ_CP019417_2	2.1\|3036673\|32\|NZ_CP019417\|CRISPRCasFinder,CRT	3036673-3036704	32	NZ_CP020440	Paracoccus yeei strain FDAARGOS_252 plasmid unnamed2, complete sequence	224971-225002	5	0.844
NZ_CP019417_2	2.1\|3036673\|32\|NZ_CP019417\|CRISPRCasFinder,CRT	3036673-3036704	32	NZ_CP044082	Paracoccus yeei strain FDAARGOS_643 plasmid unnamed4, complete sequence	90792-90823	5	0.844
NZ_CP019417_1	1.2\|3019190\|32\|NZ_CP019417\|CRISPRCasFinder,CRT,PILER-CR	3019190-3019221	32	NZ_CP033726	Clavibacter michiganensis subsp. michiganensis strain UF1 plasmid pCM2U-F1, complete sequence	43935-43966	6	0.812
NZ_CP019417_1	1.12\|3019800\|32\|NZ_CP019417\|CRISPRCasFinder,CRT,PILER-CR	3019800-3019831	32	NZ_CP024609	Massilia violaceinigra strain B2 plasmid unnamed, complete sequence	4734-4765	6	0.812
NZ_CP019417_2	2.1\|3036673\|32\|NZ_CP019417\|CRISPRCasFinder,CRT	3036673-3036704	32	NZ_CP031080	Paracoccus yeei strain CCUG 32053 plasmid pYEE2, complete sequence	271400-271431	6	0.812
NZ_CP019417_2	2.4\|3036856\|32\|NZ_CP019417\|CRISPRCasFinder,CRT,PILER-CR	3036856-3036887	32	NC_019849	Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence	850282-850313	6	0.812
NZ_CP019417_2	2.4\|3036856\|32\|NZ_CP019417\|CRISPRCasFinder,CRT,PILER-CR	3036856-3036887	32	NC_003078	Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence	887728-887759	6	0.812
NZ_CP019417_2	2.4\|3036856\|32\|NZ_CP019417\|CRISPRCasFinder,CRT,PILER-CR	3036856-3036887	32	NZ_CP019586	Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence	856045-856076	6	0.812
NZ_CP019417_2	2.4\|3036856\|32\|NZ_CP019417\|CRISPRCasFinder,CRT,PILER-CR	3036856-3036887	32	NC_017326	Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence	835457-835488	6	0.812
NZ_CP019417_2	2.4\|3036856\|32\|NZ_CP019417\|CRISPRCasFinder,CRT,PILER-CR	3036856-3036887	32	NZ_CP021799	Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence	953948-953979	6	0.812
NZ_CP019417_2	2.4\|3036856\|32\|NZ_CP019417\|CRISPRCasFinder,CRT,PILER-CR	3036856-3036887	32	NC_017323	Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence	431895-431926	6	0.812
NZ_CP019417_2	2.4\|3036856\|32\|NZ_CP019417\|CRISPRCasFinder,CRT,PILER-CR	3036856-3036887	32	NZ_CP009146	Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence	843687-843718	6	0.812
NZ_CP019417_2	2.4\|3036856\|32\|NZ_CP019417\|CRISPRCasFinder,CRT,PILER-CR	3036856-3036887	32	NC_018701	Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence	833486-833517	6	0.812
NZ_CP019417_2	2.4\|3036856\|32\|NZ_CP019417\|CRISPRCasFinder,CRT,PILER-CR	3036856-3036887	32	NZ_CP021828	Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence	457962-457993	6	0.812
NZ_CP019417_2	2.4\|3036856\|32\|NZ_CP019417\|CRISPRCasFinder,CRT,PILER-CR	3036856-3036887	32	NZ_CP021802	Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence	1502459-1502490	6	0.812
NZ_CP019417_2	2.4\|3036856\|32\|NZ_CP019417\|CRISPRCasFinder,CRT,PILER-CR	3036856-3036887	32	NZ_CP021820	Sinorhizobium meliloti strain M162 plasmid psymB, complete sequence	1188725-1188756	6	0.812
NZ_CP019417_2	2.4\|3036856\|32\|NZ_CP019417\|CRISPRCasFinder,CRT,PILER-CR	3036856-3036887	32	NZ_CP021831	Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence	1094940-1094971	6	0.812
NZ_CP019417_2	2.4\|3036856\|32\|NZ_CP019417\|CRISPRCasFinder,CRT,PILER-CR	3036856-3036887	32	NZ_CP021823	Sinorhizobium meliloti strain KH46 plasmid psymB, complete sequence	574071-574102	6	0.812
NZ_CP019417_2	2.4\|3036856\|32\|NZ_CP019417\|CRISPRCasFinder,CRT,PILER-CR	3036856-3036887	32	NZ_CP021814	Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence	758103-758134	6	0.812
NZ_CP019417_2	2.4\|3036856\|32\|NZ_CP019417\|CRISPRCasFinder,CRT,PILER-CR	3036856-3036887	32	NZ_CP021795	Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence	92938-92969	6	0.812
NZ_CP019417_2	2.4\|3036856\|32\|NZ_CP019417\|CRISPRCasFinder,CRT,PILER-CR	3036856-3036887	32	NZ_CP021810	Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence	1622461-1622492	6	0.812
NZ_CP019417_2	2.4\|3036856\|32\|NZ_CP019417\|CRISPRCasFinder,CRT,PILER-CR	3036856-3036887	32	NZ_CP021806	Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence	174090-174121	6	0.812
NZ_CP019417_2	2.4\|3036856\|32\|NZ_CP019417\|CRISPRCasFinder,CRT,PILER-CR	3036856-3036887	32	NZ_CP021218	Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence	996227-996258	6	0.812
NZ_CP019417_2	2.4\|3036856\|32\|NZ_CP019417\|CRISPRCasFinder,CRT,PILER-CR	3036856-3036887	32	NZ_CP026527	Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence	856529-856560	6	0.812
NZ_CP019417_2	2.4\|3036856\|32\|NZ_CP019417\|CRISPRCasFinder,CRT,PILER-CR	3036856-3036887	32	NZ_CP019484	Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence	1026857-1026888	6	0.812
NZ_CP019417_2	2.4\|3036856\|32\|NZ_CP019417\|CRISPRCasFinder,CRT,PILER-CR	3036856-3036887	32	NZ_CP019487	Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence	801217-801248	6	0.812
NZ_CP019417_2	2.4\|3036856\|32\|NZ_CP019417\|CRISPRCasFinder,CRT,PILER-CR	3036856-3036887	32	NC_020560	Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence	887731-887762	6	0.812
NZ_CP019417_2	2.7\|3037039\|32\|NZ_CP019417\|CRISPRCasFinder,CRT,PILER-CR	3037039-3037070	32	NC_019849	Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence	850282-850313	6	0.812
NZ_CP019417_2	2.7\|3037039\|32\|NZ_CP019417\|CRISPRCasFinder,CRT,PILER-CR	3037039-3037070	32	NC_003078	Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence	887728-887759	6	0.812
NZ_CP019417_2	2.7\|3037039\|32\|NZ_CP019417\|CRISPRCasFinder,CRT,PILER-CR	3037039-3037070	32	NZ_CP019586	Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence	856045-856076	6	0.812
NZ_CP019417_2	2.7\|3037039\|32\|NZ_CP019417\|CRISPRCasFinder,CRT,PILER-CR	3037039-3037070	32	NC_017326	Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence	835457-835488	6	0.812
NZ_CP019417_2	2.7\|3037039\|32\|NZ_CP019417\|CRISPRCasFinder,CRT,PILER-CR	3037039-3037070	32	NZ_CP021799	Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence	953948-953979	6	0.812
NZ_CP019417_2	2.7\|3037039\|32\|NZ_CP019417\|CRISPRCasFinder,CRT,PILER-CR	3037039-3037070	32	NC_017323	Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence	431895-431926	6	0.812
NZ_CP019417_2	2.7\|3037039\|32\|NZ_CP019417\|CRISPRCasFinder,CRT,PILER-CR	3037039-3037070	32	NZ_CP009146	Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence	843687-843718	6	0.812
NZ_CP019417_2	2.7\|3037039\|32\|NZ_CP019417\|CRISPRCasFinder,CRT,PILER-CR	3037039-3037070	32	NC_018701	Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence	833486-833517	6	0.812
NZ_CP019417_2	2.7\|3037039\|32\|NZ_CP019417\|CRISPRCasFinder,CRT,PILER-CR	3037039-3037070	32	NZ_CP021828	Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence	457962-457993	6	0.812
NZ_CP019417_2	2.7\|3037039\|32\|NZ_CP019417\|CRISPRCasFinder,CRT,PILER-CR	3037039-3037070	32	NZ_CP021802	Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence	1502459-1502490	6	0.812
NZ_CP019417_2	2.7\|3037039\|32\|NZ_CP019417\|CRISPRCasFinder,CRT,PILER-CR	3037039-3037070	32	NZ_CP021820	Sinorhizobium meliloti strain M162 plasmid psymB, complete sequence	1188725-1188756	6	0.812
NZ_CP019417_2	2.7\|3037039\|32\|NZ_CP019417\|CRISPRCasFinder,CRT,PILER-CR	3037039-3037070	32	NZ_CP021831	Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence	1094940-1094971	6	0.812
NZ_CP019417_2	2.7\|3037039\|32\|NZ_CP019417\|CRISPRCasFinder,CRT,PILER-CR	3037039-3037070	32	NZ_CP021823	Sinorhizobium meliloti strain KH46 plasmid psymB, complete sequence	574071-574102	6	0.812
NZ_CP019417_2	2.7\|3037039\|32\|NZ_CP019417\|CRISPRCasFinder,CRT,PILER-CR	3037039-3037070	32	NZ_CP021814	Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence	758103-758134	6	0.812
NZ_CP019417_2	2.7\|3037039\|32\|NZ_CP019417\|CRISPRCasFinder,CRT,PILER-CR	3037039-3037070	32	NZ_CP021795	Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence	92938-92969	6	0.812
NZ_CP019417_2	2.7\|3037039\|32\|NZ_CP019417\|CRISPRCasFinder,CRT,PILER-CR	3037039-3037070	32	NZ_CP021810	Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence	1622461-1622492	6	0.812
NZ_CP019417_2	2.7\|3037039\|32\|NZ_CP019417\|CRISPRCasFinder,CRT,PILER-CR	3037039-3037070	32	NZ_CP021806	Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence	174090-174121	6	0.812
NZ_CP019417_2	2.7\|3037039\|32\|NZ_CP019417\|CRISPRCasFinder,CRT,PILER-CR	3037039-3037070	32	NZ_CP021218	Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence	996227-996258	6	0.812
NZ_CP019417_2	2.7\|3037039\|32\|NZ_CP019417\|CRISPRCasFinder,CRT,PILER-CR	3037039-3037070	32	NZ_CP026527	Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence	856529-856560	6	0.812
NZ_CP019417_2	2.7\|3037039\|32\|NZ_CP019417\|CRISPRCasFinder,CRT,PILER-CR	3037039-3037070	32	NZ_CP019484	Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence	1026857-1026888	6	0.812
NZ_CP019417_2	2.7\|3037039\|32\|NZ_CP019417\|CRISPRCasFinder,CRT,PILER-CR	3037039-3037070	32	NZ_CP019487	Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence	801217-801248	6	0.812
NZ_CP019417_2	2.7\|3037039\|32\|NZ_CP019417\|CRISPRCasFinder,CRT,PILER-CR	3037039-3037070	32	NC_020560	Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence	887731-887762	6	0.812
NZ_CP019417_2	2.16\|3037588\|32\|NZ_CP019417\|CRISPRCasFinder,CRT,PILER-CR	3037588-3037619	32	NC_004813	Enterobacteria phage BP-4795, complete genome	2667-2698	6	0.812
NZ_CP019417_2	2.16\|3037588\|32\|NZ_CP019417\|CRISPRCasFinder,CRT,PILER-CR	3037588-3037619	32	AJ556162	Phage BP-4795 complete genome	2667-2698	6	0.812
NZ_CP019417_2	2.19\|3037771\|32\|NZ_CP019417\|CRISPRCasFinder,CRT,PILER-CR	3037771-3037802	32	NZ_CP013744	Streptomyces sp. CdTB01 plasmid unnamed, complete sequence	184564-184595	6	0.812
NZ_CP019417_2	2.19\|3037771\|32\|NZ_CP019417\|CRISPRCasFinder,CRT,PILER-CR	3037771-3037802	32	NC_011961	Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequence	441919-441950	6	0.812
NZ_CP019417_2	2.22\|3037954\|32\|NZ_CP019417\|CRISPRCasFinder,CRT,PILER-CR	3037954-3037985	32	NZ_AP019659	Vibrio ponticus strain DSM 16217 plasmid pVPon1	3125-3156	6	0.812
NZ_CP019417_1	1.10\|3019678\|32\|NZ_CP019417\|CRISPRCasFinder,CRT,PILER-CR	3019678-3019709	32	NZ_MK851048	Morganella morganii strain MM1L5 plasmid pMM1L5, complete sequence	1404-1435	7	0.781
NZ_CP019417_1	1.10\|3019678\|32\|NZ_CP019417\|CRISPRCasFinder,CRT,PILER-CR	3019678-3019709	32	NZ_MK851047	Actinobacillus pleuropneumoniae strain APP1L5 plasmid pAPP1L5, complete sequence	18367-18398	7	0.781
NZ_CP019417_2	2.1\|3036673\|32\|NZ_CP019417\|CRISPRCasFinder,CRT	3036673-3036704	32	NC_009621	Sinorhizobium medicae WSM419 plasmid pSMED02, complete sequence	654402-654433	7	0.781
NZ_CP019417_2	2.4\|3036856\|32\|NZ_CP019417\|CRISPRCasFinder,CRT,PILER-CR	3036856-3036887	32	NZ_CP030829	Neorhizobium sp. NCHU2750 plasmid pNCHU2750b, complete sequence	360377-360408	7	0.781
NZ_CP019417_2	2.7\|3037039\|32\|NZ_CP019417\|CRISPRCasFinder,CRT,PILER-CR	3037039-3037070	32	NZ_CP030829	Neorhizobium sp. NCHU2750 plasmid pNCHU2750b, complete sequence	360377-360408	7	0.781
NZ_CP019417_2	2.16\|3037588\|32\|NZ_CP019417\|CRISPRCasFinder,CRT,PILER-CR	3037588-3037619	32	CP053320	Salmonella enterica subsp. arizonae serovar 41:z4,z23:- strain 2016K-0011 plasmid unnamed, complete sequence	24647-24678	7	0.781
NZ_CP019417_2	2.16\|3037588\|32\|NZ_CP019417\|CRISPRCasFinder,CRT,PILER-CR	3037588-3037619	32	CP051275	Salmonella phage SW-37, complete genome	23972-24003	7	0.781
NZ_CP019417_2	2.16\|3037588\|32\|NZ_CP019417\|CRISPRCasFinder,CRT,PILER-CR	3037588-3037619	32	MT074484	Salmonella phage celemicas, complete genome	40185-40216	7	0.781
NZ_CP019417_2	2.16\|3037588\|32\|NZ_CP019417\|CRISPRCasFinder,CRT,PILER-CR	3037588-3037619	32	MG969408	UNVERIFIED: Salmonella phage GE_vB_HIL, complete genome	39678-39709	7	0.781
NZ_CP019417_2	2.16\|3037588\|32\|NZ_CP019417\|CRISPRCasFinder,CRT,PILER-CR	3037588-3037619	32	MG969409	UNVERIFIED: Salmonella phage GE_vB_M4, complete genome	11222-11253	7	0.781
NZ_CP019417_2	2.16\|3037588\|32\|NZ_CP019417\|CRISPRCasFinder,CRT,PILER-CR	3037588-3037619	32	AF349435	Bacteriophage MB78 22 kDa protein gene, complete cds; and unknown gene	1507-1538	7	0.781
NZ_CP019417_2	2.16\|3037588\|32\|NZ_CP019417\|CRISPRCasFinder,CRT,PILER-CR	3037588-3037619	32	MG969410	UNVERIFIED: Salmonella phage GE_vB_M5, complete genome	7449-7480	7	0.781
NZ_CP019417_2	2.19\|3037771\|32\|NZ_CP019417\|CRISPRCasFinder,CRT,PILER-CR	3037771-3037802	32	CP052339	Klebsiella pneumoniae strain D17KP0018 plasmid unnamed	21897-21928	7	0.781
NZ_CP019417_2	2.20\|3037832\|32\|NZ_CP019417\|CRISPRCasFinder,CRT,PILER-CR	3037832-3037863	32	MK838116	Aeromonas phage LAh10, complete genome	93092-93123	7	0.781
NZ_CP019417_1	1.2\|3019190\|32\|NZ_CP019417\|CRISPRCasFinder,CRT,PILER-CR	3019190-3019221	32	NZ_CP015231	Epibacterium mobile F1926 plasmid unnamed1, complete sequence	463868-463899	8	0.75
NZ_CP019417_1	1.2\|3019190\|32\|NZ_CP019417\|CRISPRCasFinder,CRT,PILER-CR	3019190-3019221	32	NC_021304	Streptomyces phage Sujidade, complete genome	1599-1630	8	0.75
NZ_CP019417_1	1.2\|3019190\|32\|NZ_CP019417\|CRISPRCasFinder,CRT,PILER-CR	3019190-3019221	32	MG663585	Streptomyces phage ToriToki, complete genome	15079-15110	8	0.75
NZ_CP019417_1	1.2\|3019190\|32\|NZ_CP019417\|CRISPRCasFinder,CRT,PILER-CR	3019190-3019221	32	MK112550	Streptomyces phage Olicious, complete genome	15086-15117	8	0.75
NZ_CP019417_1	1.2\|3019190\|32\|NZ_CP019417\|CRISPRCasFinder,CRT,PILER-CR	3019190-3019221	32	MG663582	Streptomyces phage HaugeAnator, complete genome	15086-15117	8	0.75
NZ_CP019417_1	1.2\|3019190\|32\|NZ_CP019417\|CRISPRCasFinder,CRT,PILER-CR	3019190-3019221	32	MG663586	Streptomyces phage ZooBear, complete genome	15086-15117	8	0.75
NZ_CP019417_1	1.2\|3019190\|32\|NZ_CP019417\|CRISPRCasFinder,CRT,PILER-CR	3019190-3019221	32	NC_048686	Streptomyces phage Immanuel3, complete genome	15090-15121	8	0.75
NZ_CP019417_1	1.2\|3019190\|32\|NZ_CP019417\|CRISPRCasFinder,CRT,PILER-CR	3019190-3019221	32	MG663584	Streptomyces phage Romero, complete genome	15079-15110	8	0.75
NZ_CP019417_1	1.10\|3019678\|32\|NZ_CP019417\|CRISPRCasFinder,CRT,PILER-CR	3019678-3019709	32	NZ_CP028957	Morganella morganii strain AR_0133 plasmid unnamed1, complete sequence	5783-5814	8	0.75
NZ_CP019417_1	1.17\|3020105\|32\|NZ_CP019417\|CRISPRCasFinder,CRT,PILER-CR	3020105-3020136	32	NZ_LR594661	Variovorax sp. PBL-H6 plasmid 3	13372-13403	8	0.75
NZ_CP019417_1	1.17\|3020105\|32\|NZ_CP019417\|CRISPRCasFinder,CRT,PILER-CR	3020105-3020136	32	NZ_CP044974	Hydrogenophaga sp. PBL-H3 substr. PBL-H3(B4) plasmid pPBL-H3_B4-2, complete sequence	85682-85713	8	0.75
NZ_CP019417_1	1.17\|3020105\|32\|NZ_CP019417\|CRISPRCasFinder,CRT,PILER-CR	3020105-3020136	32	AP018707	Uncultured bacterium plasmid pSN1104-11 DNA, complete sequence	21908-21939	8	0.75
NZ_CP019417_1	1.17\|3020105\|32\|NZ_CP019417\|CRISPRCasFinder,CRT,PILER-CR	3020105-3020136	32	AP018708	Uncultured bacterium plasmid pSN1104-34 DNA, complete sequence	21992-22023	8	0.75
NZ_CP019417_1	1.17\|3020105\|32\|NZ_CP019417\|CRISPRCasFinder,CRT,PILER-CR	3020105-3020136	32	NZ_CP044977	Hydrogenophaga sp. PBL-H3 substr. PBL-H3(B2) plasmid pPBL-H3_B2-2, complete sequence	88233-88264	8	0.75
NZ_CP019417_1	1.17\|3020105\|32\|NZ_CP019417\|CRISPRCasFinder,CRT,PILER-CR	3020105-3020136	32	NZ_CP044551	Hydrogenophaga sp. BPS33 plasmid pBPS33-2, complete sequence	87753-87784	8	0.75
NZ_CP019417_1	1.17\|3020105\|32\|NZ_CP019417\|CRISPRCasFinder,CRT,PILER-CR	3020105-3020136	32	NZ_LR594677	Variovorax sp. PBS-H4 plasmid 3	66426-66457	8	0.75
NZ_CP019417_2	2.1\|3036673\|32\|NZ_CP019417\|CRISPRCasFinder,CRT	3036673-3036704	32	NZ_CP029452	Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence	2052295-2052326	8	0.75
NZ_CP019417_2	2.1\|3036673\|32\|NZ_CP019417\|CRISPRCasFinder,CRT	3036673-3036704	32	NC_008826	Methylibium petroleiphilum PM1 plasmid RPME01, complete sequence	343727-343758	8	0.75
NZ_CP019417_2	2.4\|3036856\|32\|NZ_CP019417\|CRISPRCasFinder,CRT,PILER-CR	3036856-3036887	32	NC_012811	Methylorubrum extorquens AM1 megaplasmid, complete sequence	43093-43124	8	0.75
NZ_CP019417_2	2.4\|3036856\|32\|NZ_CP019417\|CRISPRCasFinder,CRT,PILER-CR	3036856-3036887	32	NZ_CP053442	Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eD, complete sequence	152052-152083	8	0.75
NZ_CP019417_2	2.7\|3037039\|32\|NZ_CP019417\|CRISPRCasFinder,CRT,PILER-CR	3037039-3037070	32	NC_012811	Methylorubrum extorquens AM1 megaplasmid, complete sequence	43093-43124	8	0.75
NZ_CP019417_2	2.7\|3037039\|32\|NZ_CP019417\|CRISPRCasFinder,CRT,PILER-CR	3037039-3037070	32	NZ_CP053442	Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eD, complete sequence	152052-152083	8	0.75
NZ_CP019417_2	2.11\|3037283\|32\|NZ_CP019417\|CRISPRCasFinder,CRT,PILER-CR	3037283-3037314	32	NZ_CP040761	Paracoccus sp. 2251 plasmid unnamed5, complete sequence	79790-79821	8	0.75
NZ_CP019417_2	2.11\|3037283\|32\|NZ_CP019417\|CRISPRCasFinder,CRT,PILER-CR	3037283-3037314	32	NZ_CP040762	Paracoccus sp. 2251 plasmid unnamed2, complete sequence	40438-40469	8	0.75
NZ_CP019417_2	2.16\|3037588\|32\|NZ_CP019417\|CRISPRCasFinder,CRT,PILER-CR	3037588-3037619	32	NC_022754	Salmonella phage SETP7, complete genome	33704-33735	8	0.75
NZ_CP019417_2	2.16\|3037588\|32\|NZ_CP019417\|CRISPRCasFinder,CRT,PILER-CR	3037588-3037619	32	CP053324	Salmonella enterica subsp. salamae serovar 40:c:e,n,z15 strain 2013K-0524 plasmid unnamed, complete sequence	37078-37109	8	0.75
NZ_CP019417_2	2.19\|3037771\|32\|NZ_CP019417\|CRISPRCasFinder,CRT,PILER-CR	3037771-3037802	32	NC_023287	Exiguobacterium sp. S3-2 plasmid pMC1, complete sequence	44362-44393	8	0.75
NZ_CP019417_2	2.19\|3037771\|32\|NZ_CP019417\|CRISPRCasFinder,CRT,PILER-CR	3037771-3037802	32	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	715460-715491	8	0.75
NZ_CP019417_2	2.22\|3037954\|32\|NZ_CP019417\|CRISPRCasFinder,CRT,PILER-CR	3037954-3037985	32	NZ_CP028885	Borrelia turcica IST7 plasmid lp129, complete sequence	89641-89672	8	0.75
NZ_CP019417_1	1.2\|3019190\|32\|NZ_CP019417\|CRISPRCasFinder,CRT,PILER-CR	3019190-3019221	32	NC_011368	Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG201, complete sequence	341970-342001	9	0.719
NZ_CP019417_1	1.2\|3019190\|32\|NZ_CP019417\|CRISPRCasFinder,CRT,PILER-CR	3019190-3019221	32	NZ_CP040819	Paraoceanicella profunda strain D4M1 plasmid pD4M1A, complete sequence	321406-321437	9	0.719
NZ_CP019417_1	1.4\|3019312\|32\|NZ_CP019417\|CRISPRCasFinder,CRT,PILER-CR	3019312-3019343	32	NZ_CP026091	Ralstonia solanacearum strain IBSBF 2570 plasmid unnamed, complete sequence	1282116-1282147	9	0.719
NZ_CP019417_1	1.4\|3019312\|32\|NZ_CP019417\|CRISPRCasFinder,CRT,PILER-CR	3019312-3019343	32	NC_014309	Ralstonia solanacearum CFBP2957 plasmid RCFBPv3_mp, complete genome	983836-983867	9	0.719
NZ_CP019417_1	1.4\|3019312\|32\|NZ_CP019417\|CRISPRCasFinder,CRT,PILER-CR	3019312-3019343	32	NZ_CP026093	Ralstonia solanacearum strain SFC plasmid unnamed, complete sequence	1282272-1282303	9	0.719
NZ_CP019417_1	1.5\|3019373\|32\|NZ_CP019417\|CRISPRCasFinder,CRT,PILER-CR	3019373-3019404	32	NZ_CP026091	Ralstonia solanacearum strain IBSBF 2570 plasmid unnamed, complete sequence	1282116-1282147	9	0.719
NZ_CP019417_1	1.5\|3019373\|32\|NZ_CP019417\|CRISPRCasFinder,CRT,PILER-CR	3019373-3019404	32	NC_014309	Ralstonia solanacearum CFBP2957 plasmid RCFBPv3_mp, complete genome	983836-983867	9	0.719
NZ_CP019417_1	1.5\|3019373\|32\|NZ_CP019417\|CRISPRCasFinder,CRT,PILER-CR	3019373-3019404	32	NZ_CP026093	Ralstonia solanacearum strain SFC plasmid unnamed, complete sequence	1282272-1282303	9	0.719
NZ_CP019417_1	1.6\|3019434\|32\|NZ_CP019417\|CRISPRCasFinder,CRT,PILER-CR	3019434-3019465	32	MK560763	Virgibacillus phage Mimir87, complete genome	2197-2228	9	0.719
NZ_CP019417_1	1.13\|3019861\|32\|NZ_CP019417\|CRISPRCasFinder,CRT,PILER-CR	3019861-3019892	32	MH552552	Microviridae sp. isolate ctid22, complete genome	167-198	9	0.719
NZ_CP019417_2	2.12\|3037344\|32\|NZ_CP019417\|CRISPRCasFinder,CRT,PILER-CR	3037344-3037375	32	NZ_CP046573	Rhodococcus sp. WAY2 plasmid pRWAY01, complete sequence	514812-514843	9	0.719
NZ_CP019417_2	2.16\|3037588\|32\|NZ_CP019417\|CRISPRCasFinder,CRT,PILER-CR	3037588-3037619	32	NZ_CP054718	Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence	11707-11738	9	0.719
NZ_CP019417_2	2.16\|3037588\|32\|NZ_CP019417\|CRISPRCasFinder,CRT,PILER-CR	3037588-3037619	32	NZ_CP054718	Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence	37421-37452	9	0.719
NZ_CP019417_2	2.16\|3037588\|32\|NZ_CP019417\|CRISPRCasFinder,CRT,PILER-CR	3037588-3037619	32	NZ_CP054718	Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence	115676-115707	9	0.719
NZ_CP019417_2	2.19\|3037771\|32\|NZ_CP019417\|CRISPRCasFinder,CRT,PILER-CR	3037771-3037802	32	NC_012586	Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence	1307032-1307063	9	0.719
NZ_CP019417_2	2.19\|3037771\|32\|NZ_CP019417\|CRISPRCasFinder,CRT,PILER-CR	3037771-3037802	32	NC_020062	Rhizobium tropici CIAT 899 plasmid pRtrCIAT899c, complete sequence	975551-975582	9	0.719
NZ_CP019417_2	2.22\|3037954\|32\|NZ_CP019417\|CRISPRCasFinder,CRT,PILER-CR	3037954-3037985	32	NZ_CP009044	Campylobacter iguaniorum strain 1485E plasmid pCIG1485E, complete sequence	1326-1357	9	0.719
NZ_CP019417_2	2.22\|3037954\|32\|NZ_CP019417\|CRISPRCasFinder,CRT,PILER-CR	3037954-3037985	32	NC_017471	Lactobacillus amylovorus GRL1118 plasmid p1, complete sequence	1272-1303	9	0.719
NZ_CP019417_2	2.22\|3037954\|32\|NZ_CP019417\|CRISPRCasFinder,CRT,PILER-CR	3037954-3037985	32	NC_013373	Staphylococcus sp. CDC3 plasmid SAP020A, complete sequence	35406-35437	9	0.719
NZ_CP019417_2	2.22\|3037954\|32\|NZ_CP019417\|CRISPRCasFinder,CRT,PILER-CR	3037954-3037985	32	NC_019749	Stanieria cyanosphaera PCC 7437 plasmid pSTA7437.02, complete sequence	82009-82040	9	0.719
NZ_CP019417_1	1.1\|3019129\|32\|NZ_CP019417\|CRISPRCasFinder,CRT	3019129-3019160	32	NC_016113	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence	1151729-1151760	10	0.688
NZ_CP019417_1	1.1\|3019129\|32\|NZ_CP019417\|CRISPRCasFinder,CRT	3019129-3019160	32	NC_017585	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence	661429-661460	10	0.688
NZ_CP019417_1	1.2\|3019190\|32\|NZ_CP019417\|CRISPRCasFinder,CRT,PILER-CR	3019190-3019221	32	NZ_CP032347	Azospirillum brasilense strain MTCC4039 plasmid p2, complete sequence	774630-774661	10	0.688
NZ_CP019417_2	2.16\|3037588\|32\|NZ_CP019417\|CRISPRCasFinder,CRT,PILER-CR	3037588-3037619	32	NC_022771	Bacillus phage Grass, complete genome	136200-136231	10	0.688
NZ_CP019417_2	2.17\|3037649\|32\|NZ_CP019417\|CRISPRCasFinder,CRT,PILER-CR	3037649-3037680	32	NC_014309	Ralstonia solanacearum CFBP2957 plasmid RCFBPv3_mp, complete genome	786976-787007	10	0.688
NZ_CP019417_1	1.19\|3020227\|32\|NZ_CP019417\|CRISPRCasFinder,CRT,PILER-CR	3020227-3020258	32	NZ_CP033355	Salmonella enterica subsp. enterica strain CFSA664 plasmid pCFSA664-3, complete sequence	24490-24521	11	0.656

1. spacer 1.12|3019800|32|NZ_CP019417|CRISPRCasFinder,CRT,PILER-CR matches to KY653119 (Morganella phage IME1369_02, complete genome) position: , mismatch: 2, identity: 0.938

ttgttttgcttttttcgccaggcggcgcatat	CRISPR spacer
ctcttttgcttttttcgccaggcggcgcatat	Protospacer
.* *****************************

2. spacer 2.2|3036734|32|NZ_CP019417|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP030204 (Salmonella enterica strain SA20083530 plasmid pSA20083530.1, complete sequence) position: , mismatch: 2, identity: 0.938

accgataaacaaccgcatagcctctttcgttt	CRISPR spacer
accgataaacaatcgcatggcctctttcgttt	Protospacer
************.*****.*************

3. spacer 2.5|3036917|32|NZ_CP019417|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP030204 (Salmonella enterica strain SA20083530 plasmid pSA20083530.1, complete sequence) position: , mismatch: 2, identity: 0.938

accgataaacaaccgcatagcctctttcgttt	CRISPR spacer
accgataaacaatcgcatggcctctttcgttt	Protospacer
************.*****.*************

4. spacer 1.12|3019800|32|NZ_CP019417|CRISPRCasFinder,CRT,PILER-CR matches to NC_014838 (Pantoea sp. At-9b plasmid pPAT9B01, complete sequence) position: , mismatch: 4, identity: 0.875

ttgttttgcttttttcgccaggcggcgcatat	CRISPR spacer
ctcttttgcttttttcgccaggcggcgcaggt	Protospacer
.* ************************** .*

5. spacer 2.1|3036673|32|NZ_CP019417|CRISPRCasFinder,CRT matches to NZ_CP024424 (Paracoccus yeei strain TT13 plasmid pTT13-2, complete sequence) position: , mismatch: 5, identity: 0.844

-acggcaacggatgcgaccgccagcgcgatccc	CRISPR spacer
tgcggc-acggatgaggccgccagcgcgatctc	Protospacer
 .**** ******* *.**************.*

6. spacer 2.1|3036673|32|NZ_CP019417|CRISPRCasFinder,CRT matches to NZ_CP020440 (Paracoccus yeei strain FDAARGOS_252 plasmid unnamed2, complete sequence) position: , mismatch: 5, identity: 0.844

-acggcaacggatgcgaccgccagcgcgatccc	CRISPR spacer
tgcggc-acggatgaggccgccagcgcgatctc	Protospacer
 .**** ******* *.**************.*

7. spacer 2.1|3036673|32|NZ_CP019417|CRISPRCasFinder,CRT matches to NZ_CP044082 (Paracoccus yeei strain FDAARGOS_643 plasmid unnamed4, complete sequence) position: , mismatch: 5, identity: 0.844

-acggcaacggatgcgaccgccagcgcgatccc	CRISPR spacer
tgcggc-acggatgaggccgccagcgcgatctc	Protospacer
 .**** ******* *.**************.*

8. spacer 1.2|3019190|32|NZ_CP019417|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP033726 (Clavibacter michiganensis subsp. michiganensis strain UF1 plasmid pCM2U-F1, complete sequence) position: , mismatch: 6, identity: 0.812

accgacagccaggtgacgaacgccaccaacga--	CRISPR spacer
accgacagccaggtcaagaacgcggcc--cgact	Protospacer
************** * ****** .**  ***

9. spacer 1.12|3019800|32|NZ_CP019417|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP024609 (Massilia violaceinigra strain B2 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.812

ttgttttgcttttttcgccaggcggcgcatat-	CRISPR spacer
ttgtcttgcttgtttcgccaggctg-gaatgtc	Protospacer
****.****** *********** * * **.*

10. spacer 2.1|3036673|32|NZ_CP019417|CRISPRCasFinder,CRT matches to NZ_CP031080 (Paracoccus yeei strain CCUG 32053 plasmid pYEE2, complete sequence) position: , mismatch: 6, identity: 0.812

-acggcaacggatgcgaccgccagcgcgatccc	CRISPR spacer
tgcggc-acggatgaggccgccagcgcgatctg	Protospacer
 .**** ******* *.**************.

11. spacer 2.4|3036856|32|NZ_CP019417|CRISPRCasFinder,CRT,PILER-CR matches to NC_019849 (Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

12. spacer 2.4|3036856|32|NZ_CP019417|CRISPRCasFinder,CRT,PILER-CR matches to NC_003078 (Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

13. spacer 2.4|3036856|32|NZ_CP019417|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019586 (Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

14. spacer 2.4|3036856|32|NZ_CP019417|CRISPRCasFinder,CRT,PILER-CR matches to NC_017326 (Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

15. spacer 2.4|3036856|32|NZ_CP019417|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021799 (Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

16. spacer 2.4|3036856|32|NZ_CP019417|CRISPRCasFinder,CRT,PILER-CR matches to NC_017323 (Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

17. spacer 2.4|3036856|32|NZ_CP019417|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009146 (Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

18. spacer 2.4|3036856|32|NZ_CP019417|CRISPRCasFinder,CRT,PILER-CR matches to NC_018701 (Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

19. spacer 2.4|3036856|32|NZ_CP019417|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021828 (Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

20. spacer 2.4|3036856|32|NZ_CP019417|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021802 (Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

21. spacer 2.4|3036856|32|NZ_CP019417|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021820 (Sinorhizobium meliloti strain M162 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

22. spacer 2.4|3036856|32|NZ_CP019417|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021831 (Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

23. spacer 2.4|3036856|32|NZ_CP019417|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021823 (Sinorhizobium meliloti strain KH46 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

24. spacer 2.4|3036856|32|NZ_CP019417|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021814 (Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

25. spacer 2.4|3036856|32|NZ_CP019417|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021795 (Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

26. spacer 2.4|3036856|32|NZ_CP019417|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021810 (Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

27. spacer 2.4|3036856|32|NZ_CP019417|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021806 (Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

28. spacer 2.4|3036856|32|NZ_CP019417|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021218 (Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

29. spacer 2.4|3036856|32|NZ_CP019417|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026527 (Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

30. spacer 2.4|3036856|32|NZ_CP019417|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019484 (Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

31. spacer 2.4|3036856|32|NZ_CP019417|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019487 (Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

32. spacer 2.4|3036856|32|NZ_CP019417|CRISPRCasFinder,CRT,PILER-CR matches to NC_020560 (Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

33. spacer 2.7|3037039|32|NZ_CP019417|CRISPRCasFinder,CRT,PILER-CR matches to NC_019849 (Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

34. spacer 2.7|3037039|32|NZ_CP019417|CRISPRCasFinder,CRT,PILER-CR matches to NC_003078 (Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

35. spacer 2.7|3037039|32|NZ_CP019417|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019586 (Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

36. spacer 2.7|3037039|32|NZ_CP019417|CRISPRCasFinder,CRT,PILER-CR matches to NC_017326 (Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

37. spacer 2.7|3037039|32|NZ_CP019417|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021799 (Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

38. spacer 2.7|3037039|32|NZ_CP019417|CRISPRCasFinder,CRT,PILER-CR matches to NC_017323 (Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

39. spacer 2.7|3037039|32|NZ_CP019417|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009146 (Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

40. spacer 2.7|3037039|32|NZ_CP019417|CRISPRCasFinder,CRT,PILER-CR matches to NC_018701 (Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

41. spacer 2.7|3037039|32|NZ_CP019417|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021828 (Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

42. spacer 2.7|3037039|32|NZ_CP019417|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021802 (Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

43. spacer 2.7|3037039|32|NZ_CP019417|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021820 (Sinorhizobium meliloti strain M162 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

44. spacer 2.7|3037039|32|NZ_CP019417|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021831 (Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

45. spacer 2.7|3037039|32|NZ_CP019417|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021823 (Sinorhizobium meliloti strain KH46 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

46. spacer 2.7|3037039|32|NZ_CP019417|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021814 (Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

47. spacer 2.7|3037039|32|NZ_CP019417|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021795 (Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

48. spacer 2.7|3037039|32|NZ_CP019417|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021810 (Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

49. spacer 2.7|3037039|32|NZ_CP019417|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021806 (Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

50. spacer 2.7|3037039|32|NZ_CP019417|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021218 (Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

51. spacer 2.7|3037039|32|NZ_CP019417|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026527 (Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

52. spacer 2.7|3037039|32|NZ_CP019417|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019484 (Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

53. spacer 2.7|3037039|32|NZ_CP019417|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019487 (Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

54. spacer 2.7|3037039|32|NZ_CP019417|CRISPRCasFinder,CRT,PILER-CR matches to NC_020560 (Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

55. spacer 2.16|3037588|32|NZ_CP019417|CRISPRCasFinder,CRT,PILER-CR matches to NC_004813 (Enterobacteria phage BP-4795, complete genome) position: , mismatch: 6, identity: 0.812

ctcacctgctcgtctgttagtttgctattggt	CRISPR spacer
gaaacgtattcgtctgttagtttgctattggt	Protospacer
   ** *..***********************

56. spacer 2.16|3037588|32|NZ_CP019417|CRISPRCasFinder,CRT,PILER-CR matches to AJ556162 (Phage BP-4795 complete genome) position: , mismatch: 6, identity: 0.812

ctcacctgctcgtctgttagtttgctattggt	CRISPR spacer
gaaacgtattcgtctgttagtttgctattggt	Protospacer
   ** *..***********************

57. spacer 2.19|3037771|32|NZ_CP019417|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013744 (Streptomyces sp. CdTB01 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.812

tgta-gccaactgcccgaagacatggagcggat	CRISPR spacer
-gtgcgccaactgccccaagacatggagctgcc	Protospacer
 **. *********** ************ * .

58. spacer 2.19|3037771|32|NZ_CP019417|CRISPRCasFinder,CRT,PILER-CR matches to NC_011961 (Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.812

tgtagcc-aactgcccgaagacatggagcggat	CRISPR spacer
-ggagccgaactgcccgacgagatggagcggga	Protospacer
 * **** ********** ** *********.

59. spacer 2.22|3037954|32|NZ_CP019417|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP019659 (Vibrio ponticus strain DSM 16217 plasmid pVPon1) position: , mismatch: 6, identity: 0.812

ttgaaagtgaaataaataattc---aaatccagtg	CRISPR spacer
ttgaaaatgaaataaatatttcataatatcca---	Protospacer
******.*********** ***   * *****

60. spacer 1.10|3019678|32|NZ_CP019417|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MK851048 (Morganella morganii strain MM1L5 plasmid pMM1L5, complete sequence) position: , mismatch: 7, identity: 0.781

atgccaaaaataagcggctggcg-----acgggcacc	CRISPR spacer
atgccaaaaataagcagctggcggaaaaacag-----	Protospacer
***************.*******     **.*

61. spacer 1.10|3019678|32|NZ_CP019417|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MK851047 (Actinobacillus pleuropneumoniae strain APP1L5 plasmid pAPP1L5, complete sequence) position: , mismatch: 7, identity: 0.781

atgccaaaaataagcggctggcg-----acgggcacc	CRISPR spacer
atgccaaaaataagcagctggcggaaaaacag-----	Protospacer
***************.*******     **.*

62. spacer 2.1|3036673|32|NZ_CP019417|CRISPRCasFinder,CRT matches to NC_009621 (Sinorhizobium medicae WSM419 plasmid pSMED02, complete sequence) position: , mismatch: 7, identity: 0.781

-acggcaacggatgcgaccgccagcgcgatccc	CRISPR spacer
cgcgccga-ggaagcgaccgccagcgcgagccg	Protospacer
 .** *.* *** **************** **

63. spacer 2.4|3036856|32|NZ_CP019417|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP030829 (Neorhizobium sp. NCHU2750 plasmid pNCHU2750b, complete sequence) position: , mismatch: 7, identity: 0.781

tatttcgccttcggcactgacgtcaccgtcaa	CRISPR spacer
tacgtcgccttcggcaatgtcgtcaccgaaga	Protospacer
**. ************ ** ********  .*

64. spacer 2.7|3037039|32|NZ_CP019417|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP030829 (Neorhizobium sp. NCHU2750 plasmid pNCHU2750b, complete sequence) position: , mismatch: 7, identity: 0.781

tatttcgccttcggcactgacgtcaccgtcaa	CRISPR spacer
tacgtcgccttcggcaatgtcgtcaccgaaga	Protospacer
**. ************ ** ********  .*

65. spacer 2.16|3037588|32|NZ_CP019417|CRISPRCasFinder,CRT,PILER-CR matches to CP053320 (Salmonella enterica subsp. arizonae serovar 41:z4,z23:- strain 2016K-0011 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

ctcacctgctcgtctgttagtttgctattggt	CRISPR spacer
gaaacgcgttcgtctgttagtttgttattggt	Protospacer
   ** .*.***************.*******

66. spacer 2.16|3037588|32|NZ_CP019417|CRISPRCasFinder,CRT,PILER-CR matches to CP051275 (Salmonella phage SW-37, complete genome) position: , mismatch: 7, identity: 0.781

ctcacctgctcgtctgttagtttgctattggt	CRISPR spacer
gaaacgcgttcgtctgttagtttgttattggt	Protospacer
   ** .*.***************.*******

67. spacer 2.16|3037588|32|NZ_CP019417|CRISPRCasFinder,CRT,PILER-CR matches to MT074484 (Salmonella phage celemicas, complete genome) position: , mismatch: 7, identity: 0.781

ctcacctgctcgtctgttagtttgctattggt	CRISPR spacer
tttagcgtttcgtctgttagtttgttattggt	Protospacer
.*.* *  .***************.*******

68. spacer 2.16|3037588|32|NZ_CP019417|CRISPRCasFinder,CRT,PILER-CR matches to MG969408 (UNVERIFIED: Salmonella phage GE_vB_HIL, complete genome) position: , mismatch: 7, identity: 0.781

ctcacctgctcgtctgttagtttgctattggt	CRISPR spacer
tttagcgtttcgtctgttagtttgttattggt	Protospacer
.*.* *  .***************.*******

69. spacer 2.16|3037588|32|NZ_CP019417|CRISPRCasFinder,CRT,PILER-CR matches to MG969409 (UNVERIFIED: Salmonella phage GE_vB_M4, complete genome) position: , mismatch: 7, identity: 0.781

ctcacctgctcgtctgttagtttgctattggt	CRISPR spacer
tttagcgtttcgtctgttagtttgttattggt	Protospacer
.*.* *  .***************.*******

70. spacer 2.16|3037588|32|NZ_CP019417|CRISPRCasFinder,CRT,PILER-CR matches to AF349435 (Bacteriophage MB78 22 kDa protein gene, complete cds; and unknown gene) position: , mismatch: 7, identity: 0.781

ctcacctgctcgtctgttagtttgctattggt	CRISPR spacer
tttagcgtttcgtctgttagtttgttattggt	Protospacer
.*.* *  .***************.*******

71. spacer 2.16|3037588|32|NZ_CP019417|CRISPRCasFinder,CRT,PILER-CR matches to MG969410 (UNVERIFIED: Salmonella phage GE_vB_M5, complete genome) position: , mismatch: 7, identity: 0.781

ctcacctgctcgtctgttagtttgctattggt	CRISPR spacer
tttagcgtttcgtctgttagtttgttattggt	Protospacer
.*.* *  .***************.*******

72. spacer 2.19|3037771|32|NZ_CP019417|CRISPRCasFinder,CRT,PILER-CR matches to CP052339 (Klebsiella pneumoniae strain D17KP0018 plasmid unnamed) position: , mismatch: 7, identity: 0.781

tgtagccaactgcccgaagacatggagcggat	CRISPR spacer
gcgggccaactgcccgaaaacatggggcggct	Protospacer
   .**************.******.**** *

73. spacer 2.20|3037832|32|NZ_CP019417|CRISPRCasFinder,CRT,PILER-CR matches to MK838116 (Aeromonas phage LAh10, complete genome) position: , mismatch: 7, identity: 0.781

cgacgctccttttcccgatcaatagcgacgtc	CRISPR spacer
aggatgtcgttttcacgatcaatagcgacgtc	Protospacer
 *.   ** ***** *****************

74. spacer 1.2|3019190|32|NZ_CP019417|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015231 (Epibacterium mobile F1926 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

accgacagccaggtgacgaacgccaccaacga	CRISPR spacer
tcggacatccaggtgacaaacgccaccatttc	Protospacer
 * **** *********.********** .

75. spacer 1.2|3019190|32|NZ_CP019417|CRISPRCasFinder,CRT,PILER-CR matches to NC_021304 (Streptomyces phage Sujidade, complete genome) position: , mismatch: 8, identity: 0.75

accgacagccaggtgacgaacgccaccaacga	CRISPR spacer
acggacagccaggcgacgaacgccagaagaac	Protospacer
** **********.***********  *. .

76. spacer 1.2|3019190|32|NZ_CP019417|CRISPRCasFinder,CRT,PILER-CR matches to MG663585 (Streptomyces phage ToriToki, complete genome) position: , mismatch: 8, identity: 0.75

accgacagccaggtgacgaacgccaccaacga	CRISPR spacer
atgaacaccaaggtgacgaacgccaccaagct	Protospacer
*. .*** * *******************

77. spacer 1.2|3019190|32|NZ_CP019417|CRISPRCasFinder,CRT,PILER-CR matches to MK112550 (Streptomyces phage Olicious, complete genome) position: , mismatch: 8, identity: 0.75

accgacagccaggtgacgaacgccaccaacga	CRISPR spacer
atgaacaccaaggtgacgaacgccaccaagct	Protospacer
*. .*** * *******************

78. spacer 1.2|3019190|32|NZ_CP019417|CRISPRCasFinder,CRT,PILER-CR matches to MG663582 (Streptomyces phage HaugeAnator, complete genome) position: , mismatch: 8, identity: 0.75

accgacagccaggtgacgaacgccaccaacga	CRISPR spacer
atgaacaccaaggtgacgaacgccaccaagct	Protospacer
*. .*** * *******************

79. spacer 1.2|3019190|32|NZ_CP019417|CRISPRCasFinder,CRT,PILER-CR matches to MG663586 (Streptomyces phage ZooBear, complete genome) position: , mismatch: 8, identity: 0.75

accgacagccaggtgacgaacgccaccaacga	CRISPR spacer
atgaacaccaaggtgacgaacgccaccaagct	Protospacer
*. .*** * *******************

80. spacer 1.2|3019190|32|NZ_CP019417|CRISPRCasFinder,CRT,PILER-CR matches to NC_048686 (Streptomyces phage Immanuel3, complete genome) position: , mismatch: 8, identity: 0.75

accgacagccaggtgacgaacgccaccaacga	CRISPR spacer
atgaacaccaaggtgacgaacgccaccaagct	Protospacer
*. .*** * *******************

81. spacer 1.2|3019190|32|NZ_CP019417|CRISPRCasFinder,CRT,PILER-CR matches to MG663584 (Streptomyces phage Romero, complete genome) position: , mismatch: 8, identity: 0.75

accgacagccaggtgacgaacgccaccaacga	CRISPR spacer
atgaacaccaaggtgacgaacgccaccaagct	Protospacer
*. .*** * *******************

82. spacer 1.10|3019678|32|NZ_CP019417|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP028957 (Morganella morganii strain AR_0133 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

atgccaaaaataagcggctggcg-----acgggcacc	CRISPR spacer
atgccaaaaataagcaactggcggaaaaacag-----	Protospacer
***************..******     **.*

83. spacer 1.17|3020105|32|NZ_CP019417|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR594661 (Variovorax sp. PBL-H6 plasmid 3) position: , mismatch: 8, identity: 0.75

atgccagggggttatatcggtgagtctggaga	CRISPR spacer
accccagggggttgtatcggtgcgtcttgccg	Protospacer
*. **********.******** **** *  .

84. spacer 1.17|3020105|32|NZ_CP019417|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP044974 (Hydrogenophaga sp. PBL-H3 substr. PBL-H3(B4) plasmid pPBL-H3_B4-2, complete sequence) position: , mismatch: 8, identity: 0.75

atgccagggggttatatcggtgagtctggaga	CRISPR spacer
accccagggggttgtatcggtgcgtcttgccg	Protospacer
*. **********.******** **** *  .

85. spacer 1.17|3020105|32|NZ_CP019417|CRISPRCasFinder,CRT,PILER-CR matches to AP018707 (Uncultured bacterium plasmid pSN1104-11 DNA, complete sequence) position: , mismatch: 8, identity: 0.75

atgccagggggttatatcggtgagtctggaga	CRISPR spacer
accccagggggttgtatcggtgcgtcttgccg	Protospacer
*. **********.******** **** *  .

86. spacer 1.17|3020105|32|NZ_CP019417|CRISPRCasFinder,CRT,PILER-CR matches to AP018708 (Uncultured bacterium plasmid pSN1104-34 DNA, complete sequence) position: , mismatch: 8, identity: 0.75

atgccagggggttatatcggtgagtctggaga	CRISPR spacer
accccagggggttgtatcggtgcgtcttgccg	Protospacer
*. **********.******** **** *  .

87. spacer 1.17|3020105|32|NZ_CP019417|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP044977 (Hydrogenophaga sp. PBL-H3 substr. PBL-H3(B2) plasmid pPBL-H3_B2-2, complete sequence) position: , mismatch: 8, identity: 0.75

atgccagggggttatatcggtgagtctggaga	CRISPR spacer
accccagggggttgtatcggtgcgtcttgccg	Protospacer
*. **********.******** **** *  .

88. spacer 1.17|3020105|32|NZ_CP019417|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP044551 (Hydrogenophaga sp. BPS33 plasmid pBPS33-2, complete sequence) position: , mismatch: 8, identity: 0.75

atgccagggggttatatcggtgagtctggaga	CRISPR spacer
accccagggggttgtatcggtgcgtcttgccg	Protospacer
*. **********.******** **** *  .

89. spacer 1.17|3020105|32|NZ_CP019417|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR594677 (Variovorax sp. PBS-H4 plasmid 3) position: , mismatch: 8, identity: 0.75

atgccagggggttatatcggtgagtctggaga	CRISPR spacer
accccagggggttgtatcggtgcgtcttgccg	Protospacer
*. **********.******** **** *  .

90. spacer 2.1|3036673|32|NZ_CP019417|CRISPRCasFinder,CRT matches to NZ_CP029452 (Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence) position: , mismatch: 8, identity: 0.75

acggcaacggatgcgaccgccagcgcgatccc	CRISPR spacer
cgggccgaggatgcgaccgcgagcgcgagccg	Protospacer
  *** . ************ ******* **

91. spacer 2.1|3036673|32|NZ_CP019417|CRISPRCasFinder,CRT matches to NC_008826 (Methylibium petroleiphilum PM1 plasmid RPME01, complete sequence) position: , mismatch: 8, identity: 0.75

acggcaac-----ggatgcgaccgccagcgcgatccc	CRISPR spacer
-----aacttcctcgaagcgaccgccaccgcgatccc	Protospacer
     ***      ** ********** *********

92. spacer 2.4|3036856|32|NZ_CP019417|CRISPRCasFinder,CRT,PILER-CR matches to NC_012811 (Methylorubrum extorquens AM1 megaplasmid, complete sequence) position: , mismatch: 8, identity: 0.75

tatttcgccttcggcactgacgtcaccgtcaa	CRISPR spacer
tcgaacaccttcgtcacggacgtcaccgtcga	Protospacer
*    *.****** *** ************.*

93. spacer 2.4|3036856|32|NZ_CP019417|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP053442 (Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eD, complete sequence) position: , mismatch: 8, identity: 0.75

tatttcgccttcggcactgacgtcaccgtcaa	CRISPR spacer
cattgcgccttcggcacggacgtccaccagaa	Protospacer
.*** ************ ******  *   **

94. spacer 2.7|3037039|32|NZ_CP019417|CRISPRCasFinder,CRT,PILER-CR matches to NC_012811 (Methylorubrum extorquens AM1 megaplasmid, complete sequence) position: , mismatch: 8, identity: 0.75

tatttcgccttcggcactgacgtcaccgtcaa	CRISPR spacer
tcgaacaccttcgtcacggacgtcaccgtcga	Protospacer
*    *.****** *** ************.*

95. spacer 2.7|3037039|32|NZ_CP019417|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP053442 (Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eD, complete sequence) position: , mismatch: 8, identity: 0.75

tatttcgccttcggcactgacgtcaccgtcaa	CRISPR spacer
cattgcgccttcggcacggacgtccaccagaa	Protospacer
.*** ************ ******  *   **

96. spacer 2.11|3037283|32|NZ_CP019417|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP040761 (Paracoccus sp. 2251 plasmid unnamed5, complete sequence) position: , mismatch: 8, identity: 0.75

atggatgcgagcgtatcgagccagtcaagaat	CRISPR spacer
ttattttagagcgtatcgagccaggcgagaat	Protospacer
 *.  *  **************** *.*****

97. spacer 2.11|3037283|32|NZ_CP019417|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP040762 (Paracoccus sp. 2251 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.75

atggatgcgagcgtatcgagccagtcaagaat	CRISPR spacer
ttattttagagcgtatcgagccaggcgagaat	Protospacer
 *.  *  **************** *.*****

98. spacer 2.16|3037588|32|NZ_CP019417|CRISPRCasFinder,CRT,PILER-CR matches to NC_022754 (Salmonella phage SETP7, complete genome) position: , mismatch: 8, identity: 0.75

ctcacctgctcgtctgttagtttgctattggt	CRISPR spacer
tcaggtcgctcgtctgttagtttgttattggt	Protospacer
.. . ..*****************.*******

99. spacer 2.16|3037588|32|NZ_CP019417|CRISPRCasFinder,CRT,PILER-CR matches to CP053324 (Salmonella enterica subsp. salamae serovar 40:c:e,n,z15 strain 2013K-0524 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

ctcacctgctcgtctgttagtttgctattggt	CRISPR spacer
gaaacgcgttcgtctggtagtttgttattggt	Protospacer
   ** .*.******* *******.*******

100. spacer 2.19|3037771|32|NZ_CP019417|CRISPRCasFinder,CRT,PILER-CR matches to NC_023287 (Exiguobacterium sp. S3-2 plasmid pMC1, complete sequence) position: , mismatch: 8, identity: 0.75

tgtagccaactgcccgaagacatggagcggat	CRISPR spacer
acaaaaaaactgcccgaagacatggatgggat	Protospacer
   *.  *******************  ****

101. spacer 2.19|3037771|32|NZ_CP019417|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 8, identity: 0.75

tgtagccaactgcccgaagacatggagcggat	CRISPR spacer
ggtgcgctgctgcccgaggacatgcagcggat	Protospacer
 **.  * .********.****** *******

102. spacer 2.22|3037954|32|NZ_CP019417|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP028885 (Borrelia turcica IST7 plasmid lp129, complete sequence) position: , mismatch: 8, identity: 0.75

ttgaaagtgaaataaataattcaaatccagtg	CRISPR spacer
aacaaagtgaaataaattgttcaaatcaattt	Protospacer
   ************** .******** * *

103. spacer 1.2|3019190|32|NZ_CP019417|CRISPRCasFinder,CRT,PILER-CR matches to NC_011368 (Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG201, complete sequence) position: , mismatch: 9, identity: 0.719

accgacagccaggtgacgaacgccaccaacga	CRISPR spacer
ttggacagccaggtgaccaacaccacctcccg	Protospacer
 . ************** ***.*****  * .

104. spacer 1.2|3019190|32|NZ_CP019417|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP040819 (Paraoceanicella profunda strain D4M1 plasmid pD4M1A, complete sequence) position: , mismatch: 9, identity: 0.719

accgacagccaggtgacgaacgccaccaacga	CRISPR spacer
ggcgcggcccatgtgacggacgccaccaacgc	Protospacer
. **  . *** ******.************

105. spacer 1.4|3019312|32|NZ_CP019417|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026091 (Ralstonia solanacearum strain IBSBF 2570 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

tggggttacctgcactccagtcccggcaggta	CRISPR spacer
ccggccggcctgcacttcagtccgggcaggtg	Protospacer
. ** . .********.****** *******.

106. spacer 1.4|3019312|32|NZ_CP019417|CRISPRCasFinder,CRT,PILER-CR matches to NC_014309 (Ralstonia solanacearum CFBP2957 plasmid RCFBPv3_mp, complete genome) position: , mismatch: 9, identity: 0.719

tggggttacctgcactccagtcccggcaggta	CRISPR spacer
ccggccggcctgcacttcagtccgggcaggtg	Protospacer
. ** . .********.****** *******.

107. spacer 1.4|3019312|32|NZ_CP019417|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026093 (Ralstonia solanacearum strain SFC plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

tggggttacctgcactccagtcccggcaggta	CRISPR spacer
ccggccggcctgcacttcagtccgggcaggtg	Protospacer
. ** . .********.****** *******.

108. spacer 1.5|3019373|32|NZ_CP019417|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026091 (Ralstonia solanacearum strain IBSBF 2570 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

tggggttacctgcactccagtcccggcaggta	CRISPR spacer
ccggccggcctgcacttcagtccgggcaggtg	Protospacer
. ** . .********.****** *******.

109. spacer 1.5|3019373|32|NZ_CP019417|CRISPRCasFinder,CRT,PILER-CR matches to NC_014309 (Ralstonia solanacearum CFBP2957 plasmid RCFBPv3_mp, complete genome) position: , mismatch: 9, identity: 0.719

tggggttacctgcactccagtcccggcaggta	CRISPR spacer
ccggccggcctgcacttcagtccgggcaggtg	Protospacer
. ** . .********.****** *******.

110. spacer 1.5|3019373|32|NZ_CP019417|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026093 (Ralstonia solanacearum strain SFC plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

tggggttacctgcactccagtcccggcaggta	CRISPR spacer
ccggccggcctgcacttcagtccgggcaggtg	Protospacer
. ** . .********.****** *******.

111. spacer 1.6|3019434|32|NZ_CP019417|CRISPRCasFinder,CRT,PILER-CR matches to MK560763 (Virgibacillus phage Mimir87, complete genome) position: , mismatch: 9, identity: 0.719

agccccaaggctaacagaaccaaactctacat	CRISPR spacer
catcaaatcgctaacagaaacaaactcaacat	Protospacer
 ..*  *  ********** ******* ****

112. spacer 1.13|3019861|32|NZ_CP019417|CRISPRCasFinder,CRT,PILER-CR matches to MH552552 (Microviridae sp. isolate ctid22, complete genome) position: , mismatch: 9, identity: 0.719

tactctatttatttctatatcccacgttcgat	CRISPR spacer
ttcactatttaattctatgtcccacgtgtccg	Protospacer
* * ******* ******.******** .

113. spacer 2.12|3037344|32|NZ_CP019417|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP046573 (Rhodococcus sp. WAY2 plasmid pRWAY01, complete sequence) position: , mismatch: 9, identity: 0.719

gcggcgaccagccgctctaacctca----gccagag	CRISPR spacer
tcggcgaccagccgctccaacgtcgtgacacc----	Protospacer
 ****************.*** **.    .**

114. spacer 2.16|3037588|32|NZ_CP019417|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP054718 (Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

ctcacctgctcgtctgttagtttgctattggt	CRISPR spacer
tccaaaacgtcgtctgttagttcgttattggt	Protospacer
..**     *************.*.*******

115. spacer 2.16|3037588|32|NZ_CP019417|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP054718 (Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

ctcacctgctcgtctgttagtttgctattggt	CRISPR spacer
tccaaaacgtcgtctgttagttcgttattggt	Protospacer
..**     *************.*.*******

116. spacer 2.16|3037588|32|NZ_CP019417|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP054718 (Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

ctcacctgctcgtctgttagtttgctattggt	CRISPR spacer
tccaaaacgtcgtctgttagttcgttattggt	Protospacer
..**     *************.*.*******

117. spacer 2.19|3037771|32|NZ_CP019417|CRISPRCasFinder,CRT,PILER-CR matches to NC_012586 (Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence) position: , mismatch: 9, identity: 0.719

tgtagccaactgcccgaagacatggagcggat	CRISPR spacer
catggccacctgcccggagacatggagccagc	Protospacer
..*.**** *******.*********** ...

118. spacer 2.19|3037771|32|NZ_CP019417|CRISPRCasFinder,CRT,PILER-CR matches to NC_020062 (Rhizobium tropici CIAT 899 plasmid pRtrCIAT899c, complete sequence) position: , mismatch: 9, identity: 0.719

-tgtagccaactgcccgaagacatggagcggat	CRISPR spacer
gcgcaatt-gctgcccgaagacaagcagcggat	Protospacer
 .*.*... .************* * *******

119. spacer 2.22|3037954|32|NZ_CP019417|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009044 (Campylobacter iguaniorum strain 1485E plasmid pCIG1485E, complete sequence) position: , mismatch: 9, identity: 0.719

ttgaaagtgaaataaataattcaaatccagtg	CRISPR spacer
taatatttgaaataaacaaatcaaatccagat	Protospacer
* . *  *********.** **********

120. spacer 2.22|3037954|32|NZ_CP019417|CRISPRCasFinder,CRT,PILER-CR matches to NC_017471 (Lactobacillus amylovorus GRL1118 plasmid p1, complete sequence) position: , mismatch: 9, identity: 0.719

ttgaaagtgaaataaataattcaaatccagtg	CRISPR spacer
ttttgctaaaaataaataattcaaattctgtg	Protospacer
**  .   .*****************.* ***

121. spacer 2.22|3037954|32|NZ_CP019417|CRISPRCasFinder,CRT,PILER-CR matches to NC_013373 (Staphylococcus sp. CDC3 plasmid SAP020A, complete sequence) position: , mismatch: 9, identity: 0.719

ttgaaagtgaaataaataattcaaatccagtg	CRISPR spacer
ttgaaagtgaattagataattcagaaaaacaa	Protospacer
*********** **.********.*   *  .

122. spacer 2.22|3037954|32|NZ_CP019417|CRISPRCasFinder,CRT,PILER-CR matches to NC_019749 (Stanieria cyanosphaera PCC 7437 plasmid pSTA7437.02, complete sequence) position: , mismatch: 9, identity: 0.719

ttgaaagtgaaataaataattcaaatccagtg	CRISPR spacer
cagaaagtgaattaaataatttaaaagaatta	Protospacer
. ********* *********.***   * *.

123. spacer 1.1|3019129|32|NZ_CP019417|CRISPRCasFinder,CRT matches to NC_016113 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence) position: , mismatch: 10, identity: 0.688

ttttcagcccttgtcgactgcggaacgcccct	CRISPR spacer
tccctcaccctcgtcgactgcggaccgcccgg	Protospacer
*.... .****.************ *****

124. spacer 1.1|3019129|32|NZ_CP019417|CRISPRCasFinder,CRT matches to NC_017585 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence) position: , mismatch: 10, identity: 0.688

ttttcagcccttgtcgactgcggaacgcccct	CRISPR spacer
tccctcaccctcgtcgactgcggaccgcccgg	Protospacer
*.... .****.************ *****

125. spacer 1.2|3019190|32|NZ_CP019417|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032347 (Azospirillum brasilense strain MTCC4039 plasmid p2, complete sequence) position: , mismatch: 10, identity: 0.688

accgacagccaggtgacgaacgccaccaacga	CRISPR spacer
cacgacagccaggggacggacgccatgagatt	Protospacer
  *********** ****.******. *.

126. spacer 2.16|3037588|32|NZ_CP019417|CRISPRCasFinder,CRT,PILER-CR matches to NC_022771 (Bacillus phage Grass, complete genome) position: , mismatch: 10, identity: 0.688

ctcacctgctcgtctgttagtttgctattggt	CRISPR spacer
aggagctcctcgtccgttagtttgctataatc	Protospacer
   * ** ******.************* . .

127. spacer 2.17|3037649|32|NZ_CP019417|CRISPRCasFinder,CRT,PILER-CR matches to NC_014309 (Ralstonia solanacearum CFBP2957 plasmid RCFBPv3_mp, complete genome) position: , mismatch: 10, identity: 0.688

tctctcacg--------taaaaattaaatacccgatacgg	CRISPR spacer
--------gagaaatgataaaaattaaaaatccgatacgg	Protospacer
        *        *********** *.*********

128. spacer 1.19|3020227|32|NZ_CP019417|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP033355 (Salmonella enterica subsp. enterica strain CFSA664 plasmid pCFSA664-3, complete sequence) position: , mismatch: 11, identity: 0.656

actaacctctggagggaatggtatttctattc	CRISPR spacer
ttacacctctggagggaatggtggttccgccg	Protospacer
 .  ******************. ***....

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

979200 : 1005779

uncultured_Mediterranean_phage(33.33%)

protease,plate

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000520789.1\|979200_979521_+\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	4.5e-13	45.7
WP_000934064.1\|979551_981828_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	6.2e-165	42.3
WP_052318438.1\|982325_982856_-	hypothetical protein	NA	NA	NA	NA
WP_001659428.1\|982824_983592_-	peptidoglycan DD-metalloendopeptidase family protein	NA	NA	NA	NA
WP_078054916.1\|984774_985494_-	immunity 52 family protein	NA	NA	NA	NA
WP_023219434.1\|985496_986252_-	hypothetical protein	NA	NA	NA	NA
WP_023219435.1\|986245_986596_-	hypothetical protein	NA	NA	NA	NA
WP_176146312.1\|986697_987201_-	DUF4123 domain-containing protein	NA	NA	NA	NA
WP_076741492.1\|987678_988740_-	hypothetical protein	NA	NA	NA	NA
WP_076741493.1\|988736_989762_-	DUF2169 domain-containing protein	NA	NA	NA	NA
WP_023219440.1\|989951_990623_-	DUF2931 family protein	NA	NA	NA	NA
WP_076741494.1\|990619_992527_-	DUF4150 domain-containing protein	NA	NA	NA	NA
WP_001659436.1\|992550_992787_-	hypothetical protein	NA	NA	NA	NA
WP_001659437.1\|992797_994057_-	hypothetical protein	NA	NA	NA	NA
WP_076741495.1\|994074_996036_-	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	1.0e-22	23.7
WP_039591387.1\|996257_996776_-	Hcp family type VI secretion system effector	NA	NA	NA	NA
WP_039591385.1\|997357_997855_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_076741496.1\|997875_999351_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_001659444.1\|999356_999782_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_076741497.1\|999787_1001623_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_039591390.1\|1001589_1002624_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_076741498.1\|1002628_1003918_+	type VI secretion system-associated FHA domain protein TagH	NA	NA	NA	NA
WP_001659451.1\|1003914_1004433_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_061380303.1\|1004435_1005779_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA

DBSCAN-SWA_2

1866443 : 1966398

113

Salmonella_phage(16.67%)

lysis,transposase,plate,head,protease,tRNA,tail,integrase

attL 1907704:1907726|attR 1966529:1966551

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001221017.1\|1866443_1867139_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	NA	NA	NA	NA
WP_023209838.1\|1867196_1869107_-	ATP-dependent DNA helicase	A0A127AW80	Bacillus_phage	5.9e-92	32.7
WP_000029550.1\|1869237_1869582_+	RidA family protein	NA	NA	NA	NA
WP_000457328.1\|1869587_1869767_-	YoaH family protein	NA	NA	NA	NA
WP_076741594.1\|1869847_1871212_+	aminodeoxychorismate synthase component 1	A0A0B5J984	Pandoravirus	7.3e-44	34.8
WP_000381544.1\|1871215_1871794_+	CoA pyrophosphatase	NA	NA	NA	NA
WP_000624281.1\|1872057_1873422_+	L-serine ammonia-lyase	NA	NA	NA	NA
WP_001192519.1\|1873559_1875161_+	cyclic diguanylate phosphodiesterase	NA	NA	NA	NA
WP_000421820.1\|1875182_1876742_-	CNNM family cation transport protein YoaE	A0A0R6PEZ3	Moraxella_phage	9.5e-40	44.4
WP_000150521.1\|1877214_1878183_+	PTS mannose transporter subunit IIAB	NA	NA	NA	NA
WP_000406918.1\|1878235_1879036_+	PTS mannose transporter subunit IIC	NA	NA	NA	NA
WP_001518647.1\|1879048_1879900_+	PTS mannose transporter subunit IID	NA	NA	NA	NA
WP_000156280.1\|1879957_1880416_+	DUF986 domain-containing protein	NA	NA	NA	NA
WP_001518359.1\|1880825_1881392_+	manganese efflux pump MntP	NA	NA	NA	NA
WP_000010923.1\|1881388_1882198_-	23S rRNA (guanine(745)-N(1))-methyltransferase	NA	NA	NA	NA
WP_000730326.1\|1882263_1884009_-	peptidoglycan glycosyltransferase FtsI	NA	NA	NA	NA
WP_001062678.1\|1884228_1884438_-	transcription antiterminator/RNA stability regulator CspE	A0A1W6JNX5	Morganella_phage	1.6e-22	78.1
WP_001537930.1\|1884450_1884594_-	YobF family protein	NA	NA	NA	NA
WP_001000660.1\|1885242_1885530_-	YebO family protein	NA	NA	NA	NA
WP_000714547.1\|1885600_1885744_-	PhoP/PhoQ regulator MgrB	NA	NA	NA	NA
WP_001236777.1\|1885901_1886141_+	hypothetical protein	NA	NA	NA	NA
WP_001262195.1\|1886352_1887144_-	DNA-binding transcriptional regulator KdgR	NA	NA	NA	NA
WP_000416131.1\|1887319_1888693_+	MFS transporter	NA	NA	NA	NA
WP_000502119.1\|1888800_1889259_-\|transposase	IS200/IS605-like element IS200F family transposase	NA	NA	NA	NA
WP_000984498.1\|1889451_1890333_-\|protease	protease HtpX	NA	NA	NA	NA
WP_001091237.1\|1890525_1892574_-	carboxy terminal-processing peptidase	A0A0R6PIZ1	Moraxella_phage	8.0e-87	33.5
WP_000431401.1\|1892593_1893280_-	RNA chaperone ProQ	NA	NA	NA	NA
WP_001518229.1\|1893377_1893875_-	GAF domain-containing protein	NA	NA	NA	NA
WP_001207294.1\|1894003_1895287_+	membrane integrity lipid transport subunit YebS	NA	NA	NA	NA
WP_001529852.1\|1895255_1897889_+	PqiB family protein	NA	NA	NA	NA
WP_001670762.1\|1897966_1899406_+	16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF	NA	NA	NA	NA
WP_024131167.1\|1899523_1899760_+	DUF1480 family protein	NA	NA	NA	NA
WP_000457836.1\|1899870_1900062_+	YebW family protein	NA	NA	NA	NA
WP_000986176.1\|1900080_1900731_-	protein-serine/threonine phosphatase	A0A222YWF0	Escherichia_phage	1.1e-58	51.4
WP_001134856.1\|1900954_1901119_-	membrane protein	NA	NA	NA	NA
WP_023240423.1\|1901403_1902126_-	SPI-1 type III secretion system guanine nucleotide exchange factor SopE2	NA	NA	NA	NA
WP_000422879.1\|1902809_1903205_+	DUF1398 domain-containing protein	C6ZCX4	Enterobacteria_phage	1.6e-15	33.1
WP_000030945.1\|1903532_1904009_+	hypothetical protein	NA	NA	NA	NA
WP_000354407.1\|1904381_1904801_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_001752421.1\|1905170_1905440_+	hypothetical protein	Q6UAV5	Klebsiella_phage	1.5e-06	39.0
WP_001617922.1\|1905605_1905746_+	hypothetical protein	NA	NA	NA	NA
1907704:1907726	attL	NA	NA	NA	NA
WP_001233445.1\|1908872_1909787_+	DMT family transporter	NA	NA	NA	NA
WP_000480735.1\|1909919_1910078_+	hypothetical protein	NA	NA	NA	NA
WP_000848069.1\|1910087_1910702_+	disulfide bond formation protein B	NA	NA	NA	NA
WP_001520350.1\|1911189_1911336_+	hypothetical protein	NA	NA	NA	NA
WP_001652642.1\|1911849_1911975_-	hypothetical protein	NA	NA	NA	NA
WP_010989029.1\|1912544_1912745_+	phage virulence factor PagK family protein	NA	NA	NA	NA
WP_000275418.1\|1912841_1913723_-\|tail	tail fiber assembly protein	A0A0M4RTP2	Salmonella_phage	2.2e-65	76.0
WP_000789530.1\|1914448_1914616_+	lytic enzyme	NA	NA	NA	NA
WP_001050883.1\|1914872_1915406_-	DUF2514 domain-containing protein	A0A291LBG9	Klebsiella_phage	5.4e-11	43.0
WP_076741595.1\|1915720_1916827_+	PD-(D/E)XK nuclease-like domain-containing protein	Q9QF34	Lambdoid_phage	1.2e-52	64.4
WP_076741596.1\|1916823_1917903_+\|integrase	tyrosine-type recombinase/integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	3.3e-100	52.2
WP_076741598.1\|1918685_1920227_+	sulfatase-like hydrolase/transferase	NA	NA	NA	NA
WP_000207938.1\|1920295_1921150_-	protein YibB	NA	NA	NA	NA
WP_076741599.1\|1921299_1921869_-\|tail	tail fiber assembly protein	A0A0M4RTP2	Salmonella_phage	9.9e-96	89.4
WP_076741600.1\|1921868_1923320_-\|tail	tail fiber protein	E5G6P0	Salmonella_phage	7.3e-42	70.2
WP_076741601.1\|1923309_1923912_-	DUF2612 domain-containing protein	A0A2R3UAM9	Myoviridae_environmental_samples	2.8e-32	38.4
WP_001293657.1\|1923913_1925155_-\|plate	baseplate J/gp47 family protein	A0A077KGW9	Edwardsiella_phage	1.2e-101	49.9
WP_001191860.1\|1925151_1925508_-	hypothetical protein	A0A077KCA1	Edwardsiella_phage	3.6e-19	48.1
WP_058679902.1\|1925520_1926198_-	hypothetical protein	A0A077KAY0	Edwardsiella_phage	1.2e-31	36.0
WP_000122817.1\|1926178_1927048_-	hypothetical protein	A0A077KC17	Edwardsiella_phage	5.3e-32	32.7
WP_000890115.1\|1927044_1927347_-	hypothetical protein	A0A077K9U4	Edwardsiella_phage	7.0e-24	49.5
WP_023219641.1\|1927346_1928057_-	hypothetical protein	A0A077KGW3	Edwardsiella_phage	6.5e-28	34.6
WP_058215126.1\|1928053_1930225_-	transglycosylase SLT domain-containing protein	A0A0M4REK7	Salmonella_phage	1.4e-49	67.1
WP_000228830.1\|1930208_1930391_-	hypothetical protein	NA	NA	NA	NA
WP_058116333.1\|1930432_1930837_-	hypothetical protein	H9C0W7	Aeromonas_phage	4.8e-20	45.7
WP_000016414.1\|1930836_1931283_-	hypothetical protein	Q2NPD1	Xanthomonas_phage	4.8e-21	40.4
WP_076741602.1\|1931283_1932768_-	DUF3383 domain-containing protein	A0A077KGV4	Edwardsiella_phage	1.5e-95	40.6
WP_076741603.1\|1932748_1933294_-	hypothetical protein	NA	NA	NA	NA
WP_001048637.1\|1933278_1933644_-	hypothetical protein	A0A077KAW7	Edwardsiella_phage	3.0e-21	40.5
WP_076741604.1\|1933640_1934225_-	hypothetical protein	H9C0W2	Aeromonas_phage	5.5e-17	30.6
WP_076741605.1\|1934218_1934674_-	DUF4054 domain-containing protein	H9C0W0	Aeromonas_phage	9.6e-17	45.3
WP_076741606.1\|1934680_1935028_-	hypothetical protein	H9C0V9	Aeromonas_phage	1.9e-09	38.1
WP_076741607.1\|1935031_1936060_-	DUF2184 domain-containing protein	A0A219YBB0	Aeromonas_phage	1.7e-82	48.7
WP_001091405.1\|1936059_1936542_-	hypothetical protein	A0A1X9SFC3	Acinetobacter_phage	3.2e-26	49.4
WP_076741608.1\|1936543_1937890_-	DUF2213 domain-containing protein	A0A219YCD3	Aeromonas_phage	2.5e-68	37.4
WP_023209775.1\|1937886_1938576_-\|head	phage head morphogenesis protein	A0A077KGU5	Edwardsiella_phage	7.6e-50	46.7
WP_076741609.1\|1938616_1940137_-	DUF1073 domain-containing protein	A0A2R3UAL5	Myoviridae_environmental_samples	2.4e-104	43.9
WP_076741610.1\|1940136_1941756_-	TerL protein	A0A0M5M1R6	Salmonella_phage	2.5e-261	81.2
WP_076741611.1\|1941758_1942388_-	hypothetical protein	A0A0M3ULJ9	Salmonella_phage	3.3e-108	98.6
WP_001113128.1\|1942458_1942641_-	DUF826 domain-containing protein	NA	NA	NA	NA
WP_076741612.1\|1943048_1943564_-\|lysis	lysis protein	Q56118	Enterobacteria_phage	6.1e-60	77.6
WP_164177434.1\|1943565_1943703_-	hypothetical protein	NA	NA	NA	NA
WP_076741613.1\|1943931_1944471_-	lysozyme	K7PLY1	Enterobacteria_phage	7.5e-77	71.2
WP_076741614.1\|1944737_1945142_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZCV4	Stx2-converting_phage	1.8e-67	97.0
WP_000612626.1\|1945138_1945486_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	2.6e-62	100.0
WP_076741615.1\|1945534_1947073_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	1.3e-278	93.8
WP_052938913.1\|1947731_1948268_-	DUF1133 family protein	A0A0U2S606	Escherichia_phage	3.5e-66	67.4
WP_000861020.1\|1948264_1948546_-	DUF1364 family protein	K7P7Q1	Enterobacteria_phage	1.7e-35	79.1
WP_058679884.1\|1948733_1949171_-	recombination protein NinB	G8C7V3	Escherichia_phage	5.2e-52	68.8
WP_001597144.1\|1949747_1949903_-	type I toxin-antitoxin system Hok family toxin	A0A0U2QV81	Escherichia_phage	1.2e-14	84.3
WP_000687976.1\|1950106_1950379_-	hypothetical protein	NA	NA	NA	NA
WP_000089419.1\|1950375_1950771_-	DUF977 family protein	A0A088CBK9	Shigella_phage	4.4e-18	38.8
WP_076741616.1\|1950788_1951541_-	ATP-binding protein	A0A088CBP4	Shigella_phage	1.1e-102	76.1
WP_076741617.1\|1951547_1952417_-	DNA-binding protein	A0A088CD36	Shigella_phage	6.9e-32	58.5
WP_076741618.1\|1952461_1952956_-	hypothetical protein	NA	NA	NA	NA
WP_072209360.1\|1952952_1953210_-	helix-turn-helix domain-containing protein	A0A0M4QX15	Salmonella_phage	3.2e-17	48.1
WP_071645512.1\|1953314_1953704_+	helix-turn-helix domain-containing protein	A0A0M4R5D1	Salmonella_phage	7.9e-20	47.9
WP_072156734.1\|1953871_1954027_+	DUF1391 family protein	M4QQ57	Salicola_phage	6.1e-08	55.3
WP_058679873.1\|1954462_1954705_-	hypothetical protein	NA	NA	NA	NA
WP_000613374.1\|1955153_1955438_+	hypothetical protein	K7PGY4	Enterobacteria_phage	1.7e-08	53.2
WP_000799629.1\|1955512_1955848_+	hypothetical protein	NA	NA	NA	NA
WP_076741620.1\|1955988_1959018_+	PD-(D/E)XK nuclease-like domain-containing protein	A0A0U2I1R6	Escherichia_phage	1.8e-228	44.2
WP_000107767.1\|1959030_1960125_+	recombinase RecT	H6WRX0	Salmonella_phage	2.9e-91	50.9
WP_076741621.1\|1960160_1960481_+	hypothetical protein	A0A0U2QV73	Escherichia_phage	3.6e-34	61.6
WP_000066251.1\|1960473_1960806_+	hypothetical protein	S4TNP2	Salmonella_phage	8.8e-20	81.8
WP_077946289.1\|1960802_1961972_+	DUF550 domain-containing protein	A0A1R3Y5Q8	Salmonella_virus	1.1e-85	77.5
WP_058679864.1\|1961959_1962139_+	DUF1187 family protein	NA	NA	NA	NA
WP_076741622.1\|1962232_1962490_+	hypothetical protein	NA	NA	NA	NA
WP_076741623.1\|1962486_1964580_+	DNA cytosine methyltransferase	H9C171	Pectobacterium_phage	1.8e-195	51.5
WP_057519946.1\|1964576_1965005_+	hypothetical protein	NA	NA	NA	NA
WP_031603794.1\|1965065_1965338_+	excisionase	A0A2H4J5E1	uncultured_Caudovirales_phage	1.8e-10	39.7
WP_076741624.1\|1965318_1966398_+\|integrase	phage integrase Arm DNA-binding domain-containing protein	A0A2H4IYC8	uncultured_Caudovirales_phage	9.7e-100	50.8
1966529:1966551	attR	NA	NA	NA	NA

DBSCAN-SWA_3

2073272 : 2080520

Morganella_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001157305.1\|2073272_2074703_-	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	1.0e-104	57.4
WP_001659668.1\|2074776_2075472_-	phosphohydrolase	A0A1D6Y7U0	Golden_Marseillevirus	1.8e-06	26.6
WP_000107437.1\|2075551_2075863_-	hypothetical protein	NA	NA	NA	NA
WP_001080661.1\|2076512_2077706_+	porin OmpS1	Q1MVN1	Enterobacteria_phage	3.0e-110	56.2
WP_024131109.1\|2077963_2078152_-	hypothetical protein	NA	NA	NA	NA
WP_001659666.1\|2078162_2078375_-	cold shock domain-containing protein	A0A1W6JNX5	Morganella_phage	3.9e-21	70.0
WP_000457658.1\|2078829_2080098_-	Y-family DNA polymerase	I6RSM4	Salmonella_phage	1.4e-227	92.2
WP_000394196.1\|2080100_2080520_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	8.5e-36	60.5

DBSCAN-SWA_4

2178193 : 2187351

Paramecium_bursaria_Chlorella_virus(14.29%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001660385.1\|2178193_2179360_-	UDP-glucose 6-dehydrogenase	M1I798	Paramecium_bursaria_Chlorella_virus	3.1e-112	53.5
WP_000043532.1\|2179595_2181002_-	NADP-dependent phosphogluconate dehydrogenase	M4QQM4	Ostreococcus_lucimarinus_virus	1.2e-36	28.3
WP_076741646.1\|2181172_2182543_-	colanic acid biosynthesis phosphomannomutase CpsG	A0A127AWJ1	Bacillus_phage	1.3e-32	27.5
WP_058107096.1\|2182539_2183304_-	glycosyltransferase	A0A1V0SAH6	Catovirus	1.3e-10	34.7
WP_001606058.1\|2183406_2184801_-	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	A0A1V0SH58	Hokovirus	7.4e-60	32.2
WP_001606059.1\|2184810_2185257_-	GDP-mannose mannosyl hydrolase	NA	NA	NA	NA
WP_001618438.1\|2185266_2186229_-	GDP-L-fucose synthase	M1I5W5	Acanthocystis_turfacea_Chlorella_virus	6.4e-87	51.1
WP_001660388.1\|2186232_2187351_-	GDP-mannose 4,6-dehydratase	M4QRT5	Synechococcus_phage	9.3e-130	65.8

DBSCAN-SWA_5

2192252 : 2200197

Enterobacteria_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_031605502.1\|2192252_2193356_-	DegT/DnrJ/EryC1/StrS family aminotransferase	E5ES42	Bathycoccus_sp._RCC1105_virus	1.0e-40	30.3
WP_001660400.1\|2194205_2195075_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	9.2e-109	67.0
WP_001660401.1\|2195076_2196150_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.2e-102	54.7
WP_076741648.1\|2196526_2197420_-	GalU regulator GalF	A0A127AW70	Bacillus_phage	1.4e-43	41.7
WP_076741649.1\|2197646_2198642_-	NAD-dependent epimerase/dehydratase family protein	A0A1V0QG29	Shearwaterpox_virus	1.5e-09	26.0
WP_001660404.1\|2198793_2200197_-	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	3.1e-21	26.5

DBSCAN-SWA_6

2268474 : 2277645

Enterobacteria_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000195330.1\|2268474_2270508_+\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	1.0e-54	27.6
WP_000703137.1\|2270748_2271207_+	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	8.4e-53	72.5
WP_001197951.1\|2271378_2271909_+	YehR family lipoprotein	NA	NA	NA	NA
WP_000950413.1\|2271965_2272433_-	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	3.9e-74	90.3
WP_000598637.1\|2272479_2273199_-	two-component system response regulator BtsR	NA	NA	NA	NA
WP_076741656.1\|2273195_2274881_-	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	1.4e-278	91.1
WP_001240417.1\|2275103_2275835_+	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	4.5e-101	87.9
WP_001261696.1\|2275894_2276002_+	protein YohO	NA	NA	NA	NA
WP_000824854.1\|2275982_2276714_-	ABC transporter permease	NA	NA	NA	NA
WP_000569166.1\|2276697_2277645_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.7e-23	31.2

DBSCAN-SWA_7

2539736 : 2603556

Enterobacteria_phage(58.54%)

lysis,plate,head,tail,terminase,tRNA,holin,capsid,integrase,portal

attL 2545758:2545773|attR 2590481:2590496

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000695630.1\|2539736_2541152_-\|tRNA	glutamate--tRNA ligase	NA	NA	NA	NA
WP_000438882.1\|2541966_2542851_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_000658727.1\|2542902_2543061_-	DUF1427 family protein	NA	NA	NA	NA
WP_000513243.1\|2543119_2544376_-	nucleoside permease	NA	NA	NA	NA
WP_001119750.1\|2544430_2545264_-	xanthosine phosphorylase	NA	NA	NA	NA
WP_001660574.1\|2545519_2546281_+	outer membrane protein	NA	NA	NA	NA
2545758:2545773	attL	NA	NA	NA	NA
WP_001660575.1\|2546342_2547281_-	LysR family transcriptional regulator	A0A2P0ZL89	Lactobacillus_phage	1.5e-08	25.5
WP_000765569.1\|2547357_2548356_+	bile acid:sodium symporter	NA	NA	NA	NA
WP_001519708.1\|2548352_2548571_-	DUF3820 family protein	NA	NA	NA	NA
WP_020437489.1\|2548572_2550588_-	NAD-dependent DNA ligase LigA	A0A0K2QQN8	Ralstonia_phage	2.0e-146	42.9
WP_076741678.1\|2550659_2551607_-	cell division protein ZipA	NA	NA	NA	NA
WP_000255006.1\|2551838_2552600_+	sulfate transporter CysZ	NA	NA	NA	NA
WP_000036904.1\|2552763_2553735_+	cysteine synthase A	A0A1X9I5F1	Streptococcus_phage	7.4e-75	51.0
WP_000487600.1\|2554118_2554376_+	phosphocarrier protein Hpr	NA	NA	NA	NA
WP_001660581.1\|2554424_2556152_+	phosphoenolpyruvate-protein phosphotransferase PtsI	A0A1V0SGR7	Hokovirus	7.4e-17	31.1
WP_000522253.1\|2556192_2556702_+	PTS glucose transporter subunit IIA	NA	NA	NA	NA
WP_000844541.1\|2556851_2557091_-	hypothetical protein	NA	NA	NA	NA
WP_000529613.1\|2557087_2557954_-	pyridoxine/pyridoxal/pyridoxamine kinase	NA	NA	NA	NA
WP_001660582.1\|2558036_2559329_+	transcriptional regulator PtsJ	NA	NA	NA	NA
WP_001263753.1\|2559343_2560063_+	GMP synthase	NA	NA	NA	NA
WP_000710731.1\|2560121_2560499_+	YfeK family protein	NA	NA	NA	NA
WP_001093888.1\|2560531_2561443_-	cysteine synthase CysM	A0A1X9I5F1	Streptococcus_phage	1.7e-57	41.8
WP_000021076.1\|2561510_2562608_-	sulfate/thiosulfate ABC transporter ATP-binding protein CysA	G3M9Y6	Bacillus_virus	2.1e-25	32.7
WP_000852705.1\|2562597_2563473_-	sulfate/thiosulfate ABC transporter permease CysW	NA	NA	NA	NA
WP_000881746.1\|2563472_2564306_-	sulfate/thiosulfate ABC transporter permease CysT	NA	NA	NA	NA
WP_001660584.1\|2564305_2565322_-	thiosulfate/sulfate ABC transporter substrate-binding protein CysP	NA	NA	NA	NA
WP_000517460.1\|2565479_2566271_-	SDR family oxidoreductase UcpA	Q06VL0	Trichoplusia_ni_ascovirus	1.5e-17	30.6
WP_000084583.1\|2566508_2567408_-	porphyrinogen peroxidase	S4VVJ7	Pandoravirus	3.8e-25	33.3
WP_076741679.1\|2567521_2568529_-\|integrase	tyrosine-type recombinase/integrase	A0A0A7NQ69	Enterobacteria_phage	2.1e-149	75.8
WP_076741680.1\|2568592_2568889_-	helix-turn-helix transcriptional regulator	A0A0A7NPW3	Enterobacteria_phage	8.7e-27	64.1
WP_076741681.1\|2569005_2569413_+	hypothetical protein	A0A0A7NPS5	Enterobacteria_phage	9.4e-40	61.7
WP_076741682.1\|2569664_2570063_+	hypothetical protein	NA	NA	NA	NA
WP_024154181.1\|2570134_2570377_+	hypothetical protein	NA	NA	NA	NA
WP_058647275.1\|2570382_2570586_+	LapA family protein	NA	NA	NA	NA
WP_088137047.1\|2570555_2570747_+	hypothetical protein	NA	NA	NA	NA
WP_076741683.1\|2570822_2571263_+	hypothetical protein	NA	NA	NA	NA
WP_023207951.1\|2571259_2571517_+	hypothetical protein	NA	NA	NA	NA
WP_020844109.1\|2571504_2572038_+	hypothetical protein	NA	NA	NA	NA
WP_076741684.1\|2572034_2572274_+	hypothetical protein	NA	NA	NA	NA
WP_076741685.1\|2572270_2573236_+	Dam family site-specific DNA-(adenine-N6)-methyltransferase	A0A1B2IH14	Erwinia_phage	1.2e-56	42.8
WP_078060660.1\|2573229_2573733_+	hypothetical protein	NA	NA	NA	NA
WP_076741687.1\|2573729_2574848_+	DNA cytosine methyltransferase	A0A0M3ULA1	Salmonella_phage	5.1e-136	65.1
WP_076741688.1\|2574844_2577349_+	replication endonuclease	A0A0M4RTM8	Salmonella_phage	3.5e-177	47.3
WP_076741689.1\|2577341_2577752_+	hypothetical protein	NA	NA	NA	NA
WP_045900642.1\|2578591_2579641_-\|portal	phage portal protein	A0A0A7NPT9	Enterobacteria_phage	3.3e-153	73.4
WP_045900644.1\|2579640_2581374_-	helix-turn-helix domain-containing protein	A0A0A7NV54	Enterobacteria_phage	1.7e-263	75.1
WP_000534194.1\|2581530_2582367_+\|capsid	GPO family capsid scaffolding protein	A0A0A7NRY7	Enterobacteria_phage	5.7e-100	65.5
WP_076741691.1\|2582390_2583476_+\|capsid	phage major capsid protein, P2 family	A0A0A7NQ82	Enterobacteria_phage	9.9e-137	68.4
WP_023207937.1\|2583522_2584353_+\|terminase	terminase small subunit	A0A0A7NPX9	Enterobacteria_phage	4.8e-91	65.8
WP_045900648.1\|2584454_2584949_+\|head	head completion/stabilization protein	A0A0A7NPU2	Enterobacteria_phage	2.2e-51	60.1
WP_076741692.1\|2584948_2585149_+\|tail	tail protein X	A0A0A7NV57	Enterobacteria_phage	1.3e-21	78.8
WP_001658928.1\|2585178_2585517_+\|holin	phage holin, lambda family	NA	NA	NA	NA
WP_058112086.1\|2585513_2585957_+	lysozyme	A0A075B8L0	Enterobacteria_phage	1.6e-45	63.9
WP_078060669.1\|2585963_2586455_+\|lysis	lysis protein	S4TNN7	Salmonella_phage	2.1e-33	56.1
WP_076741694.1\|2586441_2586918_+\|tail	phage tail protein	A0A0A7NPU6	Enterobacteria_phage	6.5e-40	51.0
WP_076741695.1\|2586914_2587550_+	phage virion morphogenesis protein	A0A0A7NV60	Enterobacteria_phage	3.8e-64	60.9
WP_076741696.1\|2587546_2588137_+\|plate	phage baseplate assembly protein V	A0A0A7NRZ3	Enterobacteria_phage	1.8e-68	68.1
WP_076741697.1\|2588133_2588502_+	GPW/gp25 family protein	A0A0A7NQ90	Enterobacteria_phage	8.5e-40	70.4
WP_076741698.1\|2588488_2589385_+\|plate	baseplate J/gp47 family protein	A0A0A7NPY5	Enterobacteria_phage	5.2e-107	69.5
WP_076741699.1\|2589377_2589905_+\|tail	phage tail protein I	A0A0A7NPV1	Enterobacteria_phage	7.1e-56	61.2
WP_076741700.1\|2589910_2591527_+\|tail	phage tail protein	A0A0M3ULF6	Salmonella_phage	7.0e-195	69.3
2590481:2590496	attR	NA	NA	NA	NA
WP_076741701.1\|2591523_2592348_+	macro domain-containing protein	A0A0M4QWS3	Salmonella_phage	5.2e-154	96.0
WP_076741702.1\|2592337_2592913_+\|tail	tail fiber assembly protein	A0A0M4RTP2	Salmonella_phage	3.3e-91	86.8
WP_076741703.1\|2592953_2594096_-	lipopolysaccharide N-acetylglucosaminyltransferase	NA	NA	NA	NA
WP_000980424.1\|2594379_2594868_-\|tail	phage tail protein	A0A0A7NV65	Enterobacteria_phage	1.5e-71	79.5
WP_076741704.1\|2594881_2597842_-\|tail	phage tail tape measure protein	A0A0A7NRZ9	Enterobacteria_phage	2.2e-255	51.6
WP_001627826.1\|2597828_2597987_-\|tail	GpE family phage tail protein	A0A0A7NQ96	Enterobacteria_phage	2.4e-15	79.6
WP_033904327.1\|2597992_2598292_-\|tail	tail protein	A0A0A7NPZ0	Enterobacteria_phage	1.7e-17	52.6
WP_000115856.1\|2598391_2598904_-\|tail	phage major tail tube protein	A0A0A7NPV8	Enterobacteria_phage	7.6e-63	68.0
WP_058111674.1\|2598904_2600092_-\|tail	phage tail sheath family protein	A0A0A7NV69	Enterobacteria_phage	3.7e-185	81.7
WP_076741705.1\|2600250_2601381_+	phage late control D family protein	A0A0A7NQ97	Enterobacteria_phage	1.6e-150	73.7
WP_076741706.1\|2601426_2601687_+	ogr/Delta-like zinc finger family protein	NA	NA	NA	NA
WP_048590853.1\|2601920_2602061_+	Hok/Gef family protein	S5M7Q0	Escherichia_phage	4.1e-11	69.6
WP_076741707.1\|2602214_2602967_-	type VI secretion protein	NA	NA	NA	NA
WP_076741708.1\|2603415_2603556_+	Hok/Gef family protein	S5M7Q0	Escherichia_phage	2.2e-12	71.7

DBSCAN-SWA_8

2844078 : 2853684

Enterobacteria_phage(66.67%)

integrase

attL 2841449:2841464|attR 2848892:2848907

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2841449:2841464	attL	NA	NA	NA	NA
WP_024792747.1\|2844078_2845290_+\|integrase	tyrosine-type recombinase/integrase	A0A1B5FPC6	Escherichia_phage	2.4e-107	50.4
WP_024792746.1\|2845317_2846676_+	SIR2 family protein	Q38324	Lactococcus_phage	3.0e-21	29.2
WP_024792745.1\|2847120_2847495_+	hypothetical protein	B2ZY70	Ralstonia_phage	3.1e-13	45.5
WP_024792744.1\|2847871_2848438_-	phage polarity suppression protein	Q7M2A1	Enterobacteria_phage	7.7e-56	62.7
WP_000984210.1\|2848454_2848700_-	ogr/Delta-like zinc finger family protein	Q7M294	Enterobacteria_phage	1.4e-30	76.5
WP_024792742.1\|2848696_2849434_-	hypothetical protein	Q7M2A2	Enterobacteria_phage	8.1e-82	65.7
2848892:2848907	attR	NA	NA	NA	NA
WP_003827209.1\|2849974_2850241_+	AlpA family transcriptional regulator	Q7M299	Enterobacteria_phage	2.0e-30	71.6
WP_024792741.1\|2850237_2850795_+	ash family protein	Q7M2A7	Enterobacteria_phage	2.7e-29	60.3
WP_024792740.1\|2850791_2851019_+	hypothetical protein	NA	NA	NA	NA
WP_024792739.1\|2851015_2851336_+	DUF5375 domain-containing protein	NA	NA	NA	NA
WP_024792738.1\|2851350_2853684_+	toprim domain-containing protein	Q7M2A8	Enterobacteria_phage	0.0e+00	84.4

DBSCAN-SWA_9

3312942 : 3369530

Salmonella_phage(50.0%)

integrase,plate,head,tail,tRNA,terminase,holin,capsid,lysis,portal

attL 3310616:3310636|attR 3360309:3360329

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3310616:3310636	attL	NA	NA	NA	NA
WP_076741773.1\|3312942_3313956_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	6.3e-109	59.2
WP_001144069.1\|3314183_3314399_+	30S ribosomal protein S21	NA	NA	NA	NA
WP_000918865.1\|3314634_3316380_+	DNA primase	A0A0K1LMQ9	Caulobacter_phage	2.1e-72	38.4
WP_001519776.1\|3316529_3318377_+	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	8.4e-35	33.7
WP_000237776.1\|3318500_3319007_-	G/U mismatch-specific DNA glycosylase	NA	NA	NA	NA
WP_000468307.1\|3319366_3319585_-	DNA-binding transcriptional regulator	A0A2I8TV89	Erwinia_phage	9.5e-39	98.6
WP_050178744.1\|3319651_3320821_-	phage late control D family protein	A0A0M5M5V5	Salmonella_phage	1.9e-210	97.4
WP_000978861.1\|3320817_3321303_-\|tail	phage tail protein	Q6K1G5	Salmonella_virus	1.0e-85	100.0
WP_057525168.1\|3321317_3323759_-\|tail	phage tail tape measure protein	S4TP64	Salmonella_phage	0.0e+00	90.4
WP_086127217.1\|3323751_3323907_-\|tail	GpE family phage tail protein	Q6K1G8	Salmonella_virus	2.6e-22	96.1
WP_001029727.1\|3323903_3324239_-\|tail	phage tail assembly protein	A0A0M4S5P8	Salmonella_phage	1.8e-52	100.0
WP_001207675.1\|3324301_3324820_-\|tail	phage major tail tube protein	S4TNZ0	Salmonella_phage	6.5e-94	100.0
WP_050178742.1\|3324835_3326023_-\|tail	phage tail sheath protein	Q6K1H0	Salmonella_virus	3.8e-222	99.2
WP_077945168.1\|3326191_3326812_-\|tail	tail fiber assembly protein	A0A1B0VCD0	Salmonella_phage	1.3e-109	96.4
WP_057525184.1\|3326781_3328875_-\|tail	tail fiber protein	A0A1B0VFW4	Salmonella_phage	2.6e-218	93.8
WP_023185411.1\|3328885_3329416_-\|tail	phage tail protein I	A0A0M4R4W9	Salmonella_phage	9.2e-104	99.4
WP_024157126.1\|3329408_3330317_-\|plate	baseplate assembly protein	S4TNY7	Salmonella_phage	2.0e-159	98.7
WP_024157127.1\|3330323_3330671_-	GPW/gp25 family protein	A0A0M4RE59	Salmonella_phage	1.9e-57	100.0
WP_001534860.1\|3330667_3331309_-\|plate	phage baseplate assembly protein V	Q6K1H6	Salmonella_virus	1.6e-113	99.1
WP_001293096.1\|3331377_3331827_-	phage virion morphogenesis protein	S4TP59	Salmonella_phage	4.2e-73	99.3
WP_001169074.1\|3331819_3332287_-\|tail	phage tail protein	S4TTA5	Salmonella_phage	1.1e-84	100.0
WP_001394645.1\|3332249_3332423_-	hypothetical protein	S4TNY4	Salmonella_phage	2.8e-25	98.2
WP_000866102.1\|3332394_3332808_-\|lysis	LysB family phage lysis regulatory protein	S4TRW3	Salmonella_phage	2.6e-45	100.0
WP_001144116.1\|3332804_3333302_-	glycoside hydrolase family 104 protein	S4TUB1	Salmonella_phage	1.2e-92	99.4
WP_000134660.1\|3333288_3333585_-\|holin	phage holin family protein	Q6K1I2	Salmonella_virus	5.8e-47	100.0
WP_000868400.1\|3333588_3333792_-\|tail	tail protein X	A0A0M3ULF4	Salmonella_phage	3.6e-32	100.0
WP_000214255.1\|3333791_3334298_-\|head	head completion/stabilization protein	S4TNY1	Salmonella_phage	1.3e-91	100.0
WP_076741774.1\|3334391_3335141_-\|terminase	terminase endonuclease subunit	Q6K1I5	Salmonella_virus	1.8e-129	98.8
WP_001247243.1\|3335144_3336212_-\|capsid	phage major capsid protein, P2 family	A0A0M4R4W2	Salmonella_phage	1.2e-198	99.7
WP_076741775.1\|3336288_3337143_-\|capsid	GPO family capsid scaffolding protein	A0A0M3UL81	Salmonella_phage	6.4e-147	99.6
WP_000156057.1\|3337308_3339081_+\|terminase	terminase ATPase subunit family protein	S4TT96	Salmonella_phage	0.0e+00	99.8
WP_057525165.1\|3339077_3339824_+	hypothetical protein	Q6K1I9	Salmonella_virus	2.3e-140	97.2
WP_057525164.1\|3339820_3340843_+\|portal	phage portal protein	Q6K1J0	Salmonella_virus	1.6e-197	99.4
WP_010835158.1\|3341244_3342324_+	hypothetical protein	Q7Y4B3	Escherichia_virus	1.4e-130	65.4
WP_057525163.1\|3342326_3343253_+	hypothetical protein	Q7Y4B4	Escherichia_virus	1.8e-94	54.2
WP_010835156.1\|3343255_3344191_-	DNA cytosine methyltransferase	Q7Y4B5	Escherichia_virus	1.5e-160	84.2
WP_057525166.1\|3344327_3344522_-	hypothetical protein	A0A218M4I0	Erwinia_phage	1.5e-16	81.1
WP_076741776.1\|3344639_3346856_-	replication endonuclease	A0A218M4H2	Erwinia_phage	0.0e+00	94.6
WP_153259982.1\|3346881_3347475_+	hypothetical protein	NA	NA	NA	NA
WP_000752604.1\|3347496_3347721_-	TraR/DksA family transcriptional regulator	Q6K1F5	Salmonella_virus	6.5e-35	100.0
WP_001246237.1\|3347720_3347948_-	DUF2732 domain-containing protein	A0A0M3UL87	Salmonella_phage	6.8e-32	100.0
WP_000085639.1\|3348017_3348218_-	hypothetical protein	A0A0M5M7U3	Salmonella_phage	2.3e-31	98.5
WP_057525161.1\|3348204_3348432_-	DUF2724 domain-containing protein	A0A0M4RTI3	Salmonella_phage	1.7e-35	96.0
WP_057524527.1\|3348439_3348949_-	phage regulatory CII family protein	A0A0M4QWN1	Salmonella_phage	3.1e-88	98.2
WP_057524526.1\|3348979_3349243_-	hypothetical protein	A0A218M4I5	Erwinia_phage	3.3e-38	89.7
WP_001217271.1\|3349373_3349952_+	phage repressor protein CI	A0A218M4J1	Erwinia_phage	3.5e-64	63.0
WP_000218395.1\|3349951_3350989_+\|integrase	tyrosine-type recombinase/integrase	A0A218M4I3	Erwinia_phage	1.1e-198	97.1
WP_000213688.1\|3351185_3351953_-	siderophore-interacting protein	NA	NA	NA	NA
WP_000983439.1\|3352184_3352832_+	PadR family transcriptional regulator	NA	NA	NA	NA
WP_000478471.1\|3352828_3354394_-	MCP four helix bundle domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	1.7e-12	33.9
WP_000094645.1\|3354781_3356302_-	PAS domain-containing methyl-accepting chemotaxis protein	A0A1B0V854	Salmonella_phage	8.4e-33	47.8
WP_001520281.1\|3356731_3358111_+	putrescine aminotransferase	A0A1V0SKB7	Klosneuvirus	2.9e-32	29.0
WP_023226575.1\|3358281_3360300_+	NADPH-dependent 2,4-dienoyl-CoA reductase	NA	NA	NA	NA
WP_000019985.1\|3360380_3361517_-	23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG	NA	NA	NA	NA
3360309:3360329	attR	NA	NA	NA	NA
WP_000202966.1\|3361602_3362100_+	M48 family metallopeptidase	NA	NA	NA	NA
WP_000951045.1\|3362251_3362944_+	vancomycin high temperature exclusion protein	NA	NA	NA	NA
WP_064047046.1\|3363032_3364031_+	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_001098837.1\|3364302_3365271_+	TerC family protein	I7HPH5	Enterobacteria_phage	2.2e-39	34.9
WP_000235363.1\|3365525_3366770_+	serine/threonine transporter SstT	NA	NA	NA	NA
WP_000422141.1\|3367219_3367882_+	DedA family protein	NA	NA	NA	NA
WP_001661080.1\|3367885_3368269_+	EnvZ/OmpR regulon moderator MzrA	NA	NA	NA	NA
WP_000877300.1\|3368413_3368782_+	DUF1090 domain-containing protein	NA	NA	NA	NA
WP_000031219.1\|3368823_3369129_+	DUF883 domain-containing protein	NA	NA	NA	NA
WP_000785626.1\|3369131_3369530_+\|holin	phage holin family protein	NA	NA	NA	NA

DBSCAN-SWA_10

3920786 : 3936148

Enterobacteria_phage(75.0%)

integrase

attL 3920605:3920625|attR 3930947:3930967

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3920605:3920625	attL	NA	NA	NA	NA
WP_076741830.1\|3920786_3921959_+\|integrase	tyrosine-type recombinase/integrase	Q7M297	Enterobacteria_phage	8.1e-201	88.9
WP_071650858.1\|3921989_3923849_+	DEAD/DEAH box helicase family protein	Q9G0E6	Lactococcus_phage	1.0e-11	25.4
WP_054175046.1\|3923845_3924268_+	hypothetical protein	NA	NA	NA	NA
WP_023202907.1\|3924648_3925215_-	phage polarity suppression protein	Q7M2A1	Enterobacteria_phage	7.9e-61	65.4
WP_000468231.1\|3925230_3925470_-	ogr/Delta-like zinc finger family protein	Q7M294	Enterobacteria_phage	2.4e-19	59.3
WP_023202908.1\|3925473_3926217_-	hypothetical protein	NA	NA	NA	NA
WP_000556587.1\|3926757_3927024_+	AlpA family transcriptional regulator	Q7M299	Enterobacteria_phage	2.6e-30	71.6
WP_023202909.1\|3927020_3927569_+	host cell division inhibitor Icd-like protein	Q7M2A7	Enterobacteria_phage	8.2e-31	66.7
WP_023202910.1\|3927565_3927793_+	hypothetical protein	NA	NA	NA	NA
WP_000743146.1\|3927789_3928110_+	DUF5375 domain-containing protein	NA	NA	NA	NA
WP_023202911.1\|3928124_3930458_+	toprim domain-containing protein	Q7M2A8	Enterobacteria_phage	0.0e+00	85.3
WP_000984806.1\|3932588_3933206_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
3930947:3930967	attR	NA	NA	NA	NA
WP_076741832.1\|3933280_3936148_+	intestinal colonization autotransporter adhesin MisL	A0A2L1IV18	Escherichia_phage	1.9e-94	44.1

DBSCAN-SWA_11

4535771 : 4585898

Escherichia_phage(45.45%)

integrase,transposase

attL 4532903:4532917|attR 4590307:4590321

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4532903:4532917	attL	NA	NA	NA	NA
WP_076741615.1\|4535771_4537310_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	1.3e-278	93.8
WP_076741881.1\|4539178_4539448_-	hypothetical protein	NA	NA	NA	NA
WP_076741883.1\|4539722_4540358_-	MarC family NAAT transporter	NA	NA	NA	NA
WP_076741884.1\|4540772_4541348_-\|integrase	tyrosine-type recombinase/integrase	A0A2L1IV36	Escherichia_phage	9.8e-51	50.8
WP_149866876.1\|4541639_4542359_+	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_076741886.1\|4542355_4542823_+	hypothetical protein	NA	NA	NA	NA
WP_076741887.1\|4543103_4543757_+\|integrase	tyrosine-type recombinase/integrase	A0A2L1IV36	Escherichia_phage	1.2e-49	51.3
WP_076741888.1\|4545237_4545789_+	type 1 fimbrial protein	NA	NA	NA	NA
WP_076741889.1\|4545835_4546363_+	type 1 fimbrial protein	NA	NA	NA	NA
WP_076741890.1\|4546409_4547114_+	molecular chaperone	NA	NA	NA	NA
WP_076741891.1\|4547122_4549633_+	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_149866872.1\|4549649_4550747_+	type 1 fimbrial protein	NA	NA	NA	NA
WP_076741892.1\|4550887_4551133_+	hypothetical protein	NA	NA	NA	NA
WP_076741893.1\|4551132_4551864_+	EAL domain-containing protein	NA	NA	NA	NA
WP_076741894.1\|4552524_4553064_+	hypothetical protein	NA	NA	NA	NA
WP_188317880.1\|4553262_4553406_+	hypothetical protein	NA	NA	NA	NA
WP_076741895.1\|4554109_4555291_-	hypothetical protein	NA	NA	NA	NA
WP_076741896.1\|4556343_4557636_-\|integrase	integrase arm-type DNA-binding domain-containing protein	Q7M297	Enterobacteria_phage	3.2e-73	37.3
WP_000550614.1\|4557942_4558857_+	ParA family protein	NA	NA	NA	NA
WP_000203356.1\|4558853_4560221_+	replicative DNA helicase	A0A077SK18	Escherichia_phage	1.0e-122	54.4
WP_000073295.1\|4560217_4561933_+	ParB family protein	NA	NA	NA	NA
WP_001287846.1\|4561925_4562180_+	TraR/DksA C4-type zinc finger protein	NA	NA	NA	NA
WP_000005470.1\|4562172_4562916_+	DUF2786 domain-containing protein	NA	NA	NA	NA
WP_000077899.1\|4563000_4563597_+	DUF2857 domain-containing protein	NA	NA	NA	NA
WP_001178480.1\|4563596_4563827_+	hypothetical protein	A0A286S1P6	Klebsiella_phage	2.0e-07	46.6
WP_000154859.1\|4563905_4565138_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_000818555.1\|4565479_4566202_+	TIGR03761 family integrating conjugative element protein	NA	NA	NA	NA
WP_076741897.1\|4566215_4568225_+	DNA topoisomerase III	A0A1V0SCS0	Indivirus	7.2e-24	23.2
WP_000127558.1\|4568853_4569345_+	DUF3577 domain-containing protein	NA	NA	NA	NA
WP_000527984.1\|4569417_4569621_+	hypothetical protein	NA	NA	NA	NA
WP_000168256.1\|4569638_4570190_+	single-stranded DNA-binding protein	Q1MVN2	Enterobacteria_phage	7.2e-51	62.2
WP_001144085.1\|4570268_4570511_+	DUF4160 domain-containing protein	NA	NA	NA	NA
WP_000155614.1\|4570494_4570743_+	DUF2442 domain-containing protein	NA	NA	NA	NA
WP_076741898.1\|4571009_4572359_+	TcpQ domain-containing protein	NA	NA	NA	NA
WP_000540084.1\|4572360_4572804_+	type IV pilus biogenesis protein PilM	NA	NA	NA	NA
WP_001137388.1\|4572823_4574497_+	PilN family type IVB pilus formation outer membrane protein	NA	NA	NA	NA
WP_012219506.1\|4574500_4575781_+	type 4b pilus protein PilO2	NA	NA	NA	NA
WP_001252747.1\|4575767_4576265_+	type IV pilus biogenesis protein PilP	NA	NA	NA	NA
WP_000074281.1\|4576272_4577847_+	Flp pilus assembly complex ATPase component TadA	NA	NA	NA	NA
WP_000443232.1\|4577836_4578952_+	type II secretion system F family protein	NA	NA	NA	NA
WP_001276036.1\|4578961_4579558_+	type IV prepilin	NA	NA	NA	NA
WP_000945240.1\|4579562_4580042_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA
WP_000173819.1\|4580038_4580707_+	prepilin peptidase	NA	NA	NA	NA
WP_032666787.1\|4582056_4582839_-	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	1.6e-136	97.3
WP_076741899.1\|4582835_4583858_-\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	2.6e-187	92.4
WP_001177102.1\|4584776_4585898_+\|integrase	site-specific integrase	W6MYA3	Pseudomonas_phage	2.9e-46	44.5
4590307:4590321	attR	NA	NA	NA	NA

DBSCAN-SWA_12

4813470 : 4822418

Enterobacteria_phage(83.33%)

integrase

attL 4813285:4813301|attR 4825179:4825195

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4813285:4813301	attL	NA	NA	NA	NA
WP_000772664.1\|4813470_4814739_+\|integrase	integrase arm-type DNA-binding domain-containing protein	B7SYF8	Stenotrophomonas_phage	5.7e-75	40.7
WP_000957221.1\|4814761_4815217_-	hypothetical protein	NA	NA	NA	NA
WP_000775190.1\|4815225_4816167_-	hypothetical protein	NA	NA	NA	NA
WP_076741914.1\|4816605_4817172_-	Polarity suppression protein	Q7M2A1	Enterobacteria_phage	4.6e-61	66.5
WP_001661919.1\|4817187_4817427_-	ogr/Delta-like zinc finger family protein	Q7M294	Enterobacteria_phage	6.3e-20	60.5
WP_001669418.1\|4817430_4818174_-	hypothetical protein	NA	NA	NA	NA
WP_000556587.1\|4818714_4818981_+	AlpA family transcriptional regulator	Q7M299	Enterobacteria_phage	2.6e-30	71.6
WP_000979749.1\|4818977_4819529_+	ash family protein	Q7M2A7	Enterobacteria_phage	1.2e-29	64.5
WP_001604623.1\|4819525_4819753_+	hypothetical protein	NA	NA	NA	NA
WP_001472077.1\|4819749_4820070_+	DUF5375 domain-containing protein	NA	NA	NA	NA
WP_001750171.1\|4820084_4822418_+	toprim domain-containing protein	Q7M2A8	Enterobacteria_phage	0.0e+00	85.5
4825179:4825195	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP019417

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection