CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP019418	Salmonella enterica subsp. enterica serovar Yovokome str. S-1850 chromosome, complete genome	2 crisprs	DEDDh,RT,WYL,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	2	4	6	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP019418_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP019418_1

2890953-2891652

TypeI-E

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRISPRCasFinder
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	PILER-CR

11 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of NZ_CP019418_1

>merge|NZ_CP019418|1|2890953-2891652|CRISPRCasFinder,CRT,PILER-CR
GTGTTTATCCCCGCTGACGCGGGGAACATTTTTCAGCCCTTGCCGACTGCGGAACGCCCCTCGGTTTATCCCCGCTGGCGCGGGGAACACTGATGCAGGCGTTTACGTACTGCGAGATGAAGCGGTTTATCCCCGCTGGCACGGGGAACACATATTGATACTGTTCTCAAGCGCCGTTTTAGCCGGTTTATCCCCGCTGGCGCGGGGAACACTGGACCGATGGGGCCAACATCGCCGAACGTGGCGGTTTATCCCCGCTGGCGCGGGGAACACCGCCTTACCCCTGCGCATTGGTTGTCTGTTGGCGGTTTATCCCCGCTGGCGCGGGGAACACGTAGTCAGGACCGCTGACGCGTTCGAAATCGTCGGTTTATCCCCGCTGGCGCGGGGAACACGGAAGCTGCATGAGAGCCAGCTACCTGATGAACGGTTTATCCCCGCTGGCGCGGGGAACACCGTCTATGCGGATTGGATTTGATGAGCGTATCCGGTTTATCCCCGCTGGCGCGGGGAACACAATTTAAAACGTGATTCATGTCTGATTTTTTGCGGTTTATCCCCGCTGGCGCGGGGAACACGCGCTTATTCGTCAGCCAATCGACGAGGCTATTGGTTTATCCCCGCTGGCGCGGGGAACACCAAGCGCATCTAACTCCCCCTTTGCTTTTTTCCGGTTTATCCCCGCTGGCGCAGGGAACAC

>NZ_CP019418|1|1|2890953-2891652|CRISPRCasFinder
GTGTTTATCCCCGCTGACGCGGGGAACAT	TTTTCAGCCCTTGCCGACTGCGGAACGCCCCT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGATGCAGGCGTTTACGTACTGCGAGATGAAG
CGGTTTATCCCCGCTGGCACGGGGAACAC	ATATTGATACTGTTCTCAAGCGCCGTTTTAGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGGACCGATGGGGCCAACATCGCCGAACGTGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGCCTTACCCCTGCGCATTGGTTGTCTGTTGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTAGTCAGGACCGCTGACGCGTTCGAAATCGT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGAAGCTGCATGAGAGCCAGCTACCTGATGAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGTCTATGCGGATTGGATTTGATGAGCGTATC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AATTTAAAACGTGATTCATGTCTGATTTTTTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCGCTTATTCGTCAGCCAATCGACGAGGCTAT
TGGTTTATCCCCGCTGGCGCGGGGAACAC	CAAGCGCATCTAACTCCCCCTTTGCTTTTTTC
CGGTTTATCCCCGCTGGCGCAGGGAACAC

>NZ_CP019418|1|1|2890953-2891652|CRT
GTGTTTATCCCCGCTGACGCGGGGAACAT	TTTTCAGCCCTTGCCGACTGCGGAACGCCCCT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGATGCAGGCGTTTACGTACTGCGAGATGAAG
CGGTTTATCCCCGCTGGCACGGGGAACAC	ATATTGATACTGTTCTCAAGCGCCGTTTTAGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGGACCGATGGGGCCAACATCGCCGAACGTGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGCCTTACCCCTGCGCATTGGTTGTCTGTTGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTAGTCAGGACCGCTGACGCGTTCGAAATCGT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGAAGCTGCATGAGAGCCAGCTACCTGATGAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGTCTATGCGGATTGGATTTGATGAGCGTATC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AATTTAAAACGTGATTCATGTCTGATTTTTTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCGCTTATTCGTCAGCCAATCGACGAGGCTAT
TGGTTTATCCCCGCTGGCGCGGGGAACAC	CAAGCGCATCTAACTCCCCCTTTGCTTTTTTC
CGGTTTATCCCCGCTGGCGCAGGGAACAC

>NZ_CP019418|1|1|2891014-2891652|PILER-CR
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGATGCAGGCGTTTACGTACTGCGAGATGAAG
CGGTTTATCCCCGCTGGCACGGGGAACAC	ATATTGATACTGTTCTCAAGCGCCGTTTTAGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGGACCGATGGGGCCAACATCGCCGAACGTGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGCCTTACCCCTGCGCATTGGTTGTCTGTTGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTAGTCAGGACCGCTGACGCGTTCGAAATCGT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGAAGCTGCATGAGAGCCAGCTACCTGATGAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGTCTATGCGGATTGGATTTGATGAGCGTATC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AATTTAAAACGTGATTCATGTCTGATTTTTTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCGCTTATTCGTCAGCCAATCGACGAGGCTAT
TGGTTTATCCCCGCTGGCGCGGGGAACAC	CAAGCGCATCTAACTCCCCCTTTGCTTTTTTC
CGGTTTATCCCCGCTGGCGCAGGGAACAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019418.1\|WP_000490481.1\|2889891_2890938_+\|aminopeptidase	unknown	unknown	gnl\|CDD\|182299
NZ_CP019418.1\|WP_023259900.1\|2897535_2900199_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP019418.1\|WP_020437810.1\|2892958_2893609_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|273869
NZ_CP019418.1\|WP_020437812.1\|2894347_2895406_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|273843
NZ_CP019418.1\|WP_000144836.1\|2892041_2892962_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NZ_CP019418.1\|WP_024143111.1\|2900642_2901596_+\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
NZ_CP019418.1\|WP_000372384.1\|2888732_2889641_-\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375
NZ_CP019418.1\|WP_000134246.1\|2883561_2884611_-\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
NZ_CP019418.1\|WP_001219244.1\|2884607_2885087_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
NZ_CP019418.1\|WP_000368586.1\|2895964_2897524_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
NZ_CP019418.1\|WP_020437813.1\|2895419_2895968_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
NZ_CP019418.1\|WP_001518648.1\|2891748_2892042_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
NZ_CP019418.1\|WP_020437817.1\|2901808_2902543_-\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NZ_CP019418.1\|WP_000517480.1\|2885815_2886127_-\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
NZ_CP019418.1\|WP_020437811.1\|2893590_2894337_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
NZ_CP019418.1\|WP_001537530.1\|2886317_2886641_-\|DUF3561-family-protein	unknown	unknown	gnl\|CDD\|371891
NZ_CP019418.1\|WP_001092256.1\|2887283_2888723_-\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
NZ_CP019418.1\|WP_001173662.1\|2886691_2887297_-\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
NZ_CP019418.1\|WP_000741649.1\|2885086_2885797_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
NZ_CP019418.1\|WP_001221537.1\|2882819_2883581_-\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732

Protein	Function_ID	Function_description	E-value
NZ_CP019418.1\|WP_000490481.1\|2889891_2890938_+\|aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
NZ_CP019418.1\|WP_023259900.1\|2897535_2900199_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	0
NZ_CP019418.1\|WP_020437810.1\|2892958_2893609_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	3.88638e-73
NZ_CP019418.1\|WP_020437812.1\|2894347_2895406_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	4.71017e-137
NZ_CP019418.1\|WP_000144836.1\|2892041_2892962_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	9.54577e-157
NZ_CP019418.1\|WP_024143111.1\|2900642_2901596_+\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
NZ_CP019418.1\|WP_000372384.1\|2888732_2889641_-\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
NZ_CP019418.1\|WP_000134246.1\|2883561_2884611_-\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
NZ_CP019418.1\|WP_001219244.1\|2884607_2885087_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	1.27909e-104
NZ_CP019418.1\|WP_000368586.1\|2895964_2897524_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	5.17383e-173
NZ_CP019418.1\|WP_020437813.1\|2895419_2895968_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	1.36817e-32
NZ_CP019418.1\|WP_001518648.1\|2891748_2892042_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	1.1867e-62
NZ_CP019418.1\|WP_020437817.1\|2901808_2902543_-\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	1.47425e-138
NZ_CP019418.1\|WP_000517480.1\|2885815_2886127_-\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	1.08865e-64
NZ_CP019418.1\|WP_020437811.1\|2893590_2894337_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	2.09777e-48
NZ_CP019418.1\|WP_001537530.1\|2886317_2886641_-\|DUF3561-family-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	3.31009e-48
NZ_CP019418.1\|WP_001092256.1\|2887283_2888723_-\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
NZ_CP019418.1\|WP_001173662.1\|2886691_2887297_-\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	3.92486e-146
NZ_CP019418.1\|WP_000741649.1\|2885086_2885797_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	2.24126e-119
NZ_CP019418.1\|WP_001221537.1\|2882819_2883581_-\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	7.64916e-147

>NZ_CP019418.1|WP_000490481.1|2889891_2890938_+|aminopeptidase
MFSATRRFAVILALGVGFILPAQAASPGPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLDNLIVGDKLYFNSGKNTPEAVRTLTRDRALAIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS
>NZ_CP019418.1|WP_000372384.1|2888732_2889641_-|sulfate-adenylyltransferase-subunit-CysD
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF
>NZ_CP019418.1|WP_001092256.1|2887283_2888723_-|sulfate-adenylyltransferase-subunit-CysN
MNTILAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTLQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYREETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSANMRWYSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNLDFRGYAGTLASGSVKVGERIKVLPSGVESSVARIVTFDGDKEEACAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMAEQPLAPGQSYDVKLAGKKTRARIEAIRYQIDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVRELDERGATPPVEYSAFELELNALVRRHFPHWDARDLLGDKHGAA
>NZ_CP019418.1|WP_001173662.1|2886691_2887297_-|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVAAREQLHGHRGVVLWFTGLSGSGKSTVAGALEEALHQRGVSTYLLDGDNVRHGLCRDLGFSDADRQENIRRVGEVASLMADAGLIVLTAFISPHRAERQLVKERVGHDRFIEIYVNTPLAICEQRDPKGLYKKARAGELRNFTGIDAIYEAPDSPQVHLDGEQLVTNLVSQLLDLLRRRDIIRS
>NZ_CP019418.1|WP_001537530.1|2886317_2886641_-|DUF3561-family-protein
MRNSHNITFTRSDAFMVDDDATSAFPGAVVGFVSWLLALGIPFLLYGPNTLFFFLYTWPFFLALMPVSVIIGIALHLLVKGKILFSIMFTLLAVGALFGALFIWLLG
>NZ_CP019418.1|WP_000517480.1|2885815_2886127_-|cell-division-protein-FtsB
MGKLTLLLLALLVWLQYSLWFGKNGIHDYSRVNDDVVAQQATNAKLKARNDQLFAEIDDLNGGQEAIEERARNELSMTKPGETFYRLVPDASKRAATAGQTHR
>NZ_CP019418.1|WP_000741649.1|2885086_2885797_-|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MAATLLDVCAVVPAAGFGRRMQTECPKQYLSIGNKTILEHSVHALLAHPRVTRVVIAISPGDHRFAQLPLANHPQITVVDGGNERADSVLAGLQAVAKAQWVLVHDAARPCLHQDDLARLLAISENSRVGGILASPVRDTMKRGEPGKNAIAHTVERADLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPALVEGRADNIKVTRPEDLALAEFYLTRTIHQEKA
>NZ_CP019418.1|WP_001219244.1|2884607_2885087_-|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLMKAAK
>NZ_CP019418.1|WP_000134246.1|2883561_2884611_-|tRNA-pseudouridine(13)-synthase-TruD
MTEFDNLTWLHGKPQGSGLLKANPEDFVVVEDLGFTPDGEGEHILLRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDFSAFQLEGCKVLEYARHKRKLRLGALKGNAFTLVLREISDRRDVETRLQAIRDGGVPNYFGAQRFGIGGSNLQGALRWAQSNAPVRDRNKRSFWLSAARSALFNQIVHQRLKKPDFNQVVDGDALQLAGRGSWFVATSEELPELQRRVDEKELMITASLPGSGEWGTQRAALAFEQDAIAQETVLQSLLLREKVEASRRAMLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVVRELINTMGDYAHIAE
>NZ_CP019418.1|WP_001221537.1|2882819_2883581_-|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLNGYQHYDTAAAVTCALLRGLSREPLRTGRILNVNVPDLPLAQIKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVDEGYVSVTPLHVDLTAHSAHDVVSDWLDSVGVGTQW
>NZ_CP019418.1|WP_001518648.1|2891748_2892042_-|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMVVVVTENVPPRLRGRLAVWLLEVRAGVYVGDTSKRIREMIWQQITQLGGVGNVVMAWATNTESGFEFQTWGENRRIPVDLDGLRLVSFLPVENQ
>NZ_CP019418.1|WP_000144836.1|2892041_2892962_-|type-I-E-CRISPR-associated-endonuclease-Cas1
MTFVPLNPIPLKDRTSMIFLQYGQIDVLDGAFVLINKTGVRTHIPVGSVACIMLEPGTRVSHAAVHLASTVGTLLVWVGEAGVRVYSSGQPGGARADKLLYQAKLALDDDLRLKVVRKMYELRFREPPPARRSVEQLRGIEGSRVRATYALLAKQYGVKWHGRNYDPKDWEKGDVVNRCISAATSCLYGISEAAILAAGYAPAIGFIHSGKPLSFVYDIADIIKFESVVPKAFEIAARHPAEPDKEVRLACRDIFRSSKLTGKLIPLIEEVLAAGEIEPPQPAPDMLPPAIPEPESLGDSGHRGHG
>NZ_CP019418.1|WP_020437810.1|2892958_2893609_-|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRITLHTSELSPAQLLHLVERGEYVMHQWLWDLFPGGKERQFLYRREELQGAFRFFVLSQEQPAASAIFDAQTRPFAPMLSAGQTLRFNLRANPTVCKNGKRHDLLMEAKRQRKTQGDSQDIWSYQQQAALTWLARQGEQNGFTLREASVDAYRQQQIRREKSRQMIQFSSVDYTGVLVLNDPVLFLRRLAQGYGKSRAFGCGMMMIKPGDDA
>NZ_CP019418.1|WP_020437811.1|2893590_2894337_-|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSQYLVFQLHGPMASWGVDAPGEVRHSHELPSRSALLGLLAAALGIRRDEEERLNAFNRHYQFLLCASGNPRWARDYHTVQMPKEVRKARYFSRREELQDPELLSALISRRDYYTDAWWMIAVSATPDAPYTLAQLQAALQHPVFPLYLGRKSHPLALPLAPQLLEGSAADVLREAYRQYQDKFNALKLPLPRLQNECWWEGEHDGLTANKILRRRDMPLSRQQWLFGERSVNQGPWLRKEDACISQE
>NZ_CP019418.1|WP_020437812.1|2894347_2895406_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGAKRLRISSQSLKRAWRTSELFEQALAGNIGIRTGRIAREAAQILIDSGIDAKKAVEYVEKIANCFGKVKAEKKPKDELTNAETEQLVHISPAEFEGVKALAHRLAEEKRAPQEEELALLRKDRMAVDIAMFGRMLANKPDFNVEAACQVAHAFGVSETIIEDDFFTAVDDLRQASAEDAGAGHLGETGFGSALFYTYICIDKDLLVKNLNGNEELANKTLRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTDQLNVAVKRITSLHKNMNKVYGQRTDTASFDVMNQQGSMKDVLDFICA
>NZ_CP019418.1|WP_020437813.1|2895419_2895968_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSIVQEDHKATLRKWHEDLQEKRGARASLRRSKTVNEACLSEGFHLLLMQTHSLWKNKADWHVTALAITAVLAAHIKFIDERQSFATQLGQKKSGDNPVMSKLRFSRLSAVKTPEELLRQLRRAVQLLDGSVNLISLADDIFRWCQEQDDLLSHHRRQQRPTEFLRIRWALEYYQAGDNEQD
>NZ_CP019418.1|WP_000368586.1|2895964_2897524_-|type-I-E-CRISPR-associated-protein-Cse1/CasA
MDNFSLLTTPWLPVRFKDGSTGKLAPVNLADENVVDIAATRADLQGAAWQFLLGLLQCSIAPKRYKNWEDIWFDGLHADALHKALAPLEHAFQFGAETPSFMQDFEELPDNKITIASLLPETPGIQTTELNTDHFIKRGVMECFCPHCAALALFSMQLNAPSGGQGYRTGLRGGGPLTTLIELQEYQGERQTPLWRKLWLNVMPQDAADLPLPVVYDAAVFPWLAATRTSEPPAHTITTDEQVNKLQAYWGMPRRIRLDFATIRQGVCNICGNNSDELLIQMLVKNYGVNYDRWRHPLTPHRLQIKNSKGFEPVITQPGGLLWRDWLGLSQENPTEKNTEYPAQVIKVFNARELRNIKVGLWGFGADFKKMKIRCWYEHHFPLLMTEGLIPDLRKATQTATRLLSLLRSALKEAWFANAKGARGDFSFIDIDFWNLTQGRFLNLIHDLENGHKPDERLNKWQRELWLFTRCYFDDHVFTNPYESSDLERIMKARKKYFTSSAEKQSAKAAKAKKQEAAE
>NZ_CP019418.1|WP_023259900.1|2897535_2900199_-|CRISPR-associated-helicase/endonuclease-Cas3
MSIYHYWGKSRRGETNGGDDYHLLCWHSLDVAAVGYWMVINNIYFIDHYLKKLGIQDKEQAAQFFAWILCWHDIGKFAHSFQQLYRHEALNIFNEPTRHYEKIAHTTLGYMLWNSWLSECPELFPPSSLSARKSKRVMALWMPVTTGHHGRPPEAIQELDHFRQQDKDAARDFLLRIKALFPLITLPEAWDEDEGIDQFQQLSWFISAAVVLADWTGSASRYFPRTAEKMPVDTYWQQALAKAQTAITLFPSAANVSAFTGIETLFPFIQHPTPLQQKALELDINVDGAQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLYFGLPTMATANAMFERMANTWLALYQPDSRPSLILAHSARRLMDRFNQSIWSVTLSGTEEPDEAQPDSQGCAAWFADSNKKALLAEVGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAWMSRILEGLIERQASNGNATILLSATLSQQQRDKLVAAFSRGVRRSVQAPLLGHDDYPWLTQVTQTELISQRVDTRKEVERSVDIGWLHSEESCLERIGEAVEKGNCIAWIRNSVDDAIRIYRQLQLSKVVATENLLLFHSRFAFHDRQRIESQMLNLFGKQSGAQRAGKVIIATQVIEQSLDIDCDEMISDLAPVDLLIQRAGRLQRHIRDRNGLVKKSGQDERETPVLRILAPEWDDAPRENWLSSAMRNSAYVYPDHGRMWLTQRILREQGTIRMPQSARLLIESVYGEDVNMPVGFAKTEQLQKGKFYCDRAFARQMLLNFAPGYCAEISDSLPEKMSTRLAEESVTLWLAKIVDGVVTPYTSGEHAWEMSVLRVRQSWWNKHKDEFEKLDGEPLRKWCAQQHQDKDFATVIVVTDCAACGYSANEGLIGMMGE
>NZ_CP019418.1|WP_024143111.1|2900642_2901596_+|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMDVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGSKMTWHPELLQESISTLRKEVTGNAQIKTAVYEMMRPAEAPDHPLVEWQDSLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFSEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLV
>NZ_CP019418.1|WP_020437817.1|2901808_2902543_-|phosphoadenosine-phosphosulfate-reductase
MSKLDLNALNDLPKVDRVLALAETNAQLETLTAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQESRYGKLWEQGVEGIEKYNEINKVEPMNRALKELNAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG

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Crispr_ID: NZ_CP019418_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP019418_2

2907936-2908087

TypeI-E

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTGGCGCGGGGAACACA	CRISPRCasFinder

2 spacers

cas3,cas8e,cse2gr11,cas7

The CRISPR arrays of NZ_CP019418_2

>merge|NZ_CP019418|2|2907936-2908087|CRISPRCasFinder
ACGGCTATCCTTGTTGGCGCGGGGAACACGGCTACACGCAAAAATTCCAGTCGTTGGCGCACGGTTTATCCCCGCTGGCGCGGGGAACACAAAGGGAGCCAAATCTGCCGCATGACCATCGTCGGTTTATCCCCGCTGGCGCGGGGAACACA

>NZ_CP019418|2|2|2907936-2908087|CRISPRCasFinder
ACGGCTATCCTTGTTGGCGCGGGGAACACG	GCTACACGCAAAAATTCCAGTCGTTGGCGCA
CGGTTTATCCCCGCTGGCGCGGGGAACACA	AAGGGAGCCAAATCTGCCGCATGACCATCGT
CGGTTTATCCCCGCTGGCGCGGGGAACACA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019418.1\|WP_000210863.1\|2910570_2912208_-\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437
NZ_CP019418.1\|WP_023259900.1\|2897535_2900199_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP019418.1\|WP_020437818.1\|2902644_2904357_-\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
NZ_CP019418.1\|WP_000108313.1\|2906590_2906953_+\|6-carboxytetrahydropterin-synthase-QueD	unknown	unknown	gnl\|CDD\|238264
NZ_CP019418.1\|WP_076734763.1\|2914508_2917208_+\|fimbrial-biogenesis-outer-membrane-usher-protein	unknown	unknown	gnl\|CDD\|185176
NZ_CP019418.1\|WP_000178258.1\|2918013_2918520_+\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185178
NZ_CP019418.1\|WP_020437812.1\|2894347_2895406_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|273843
NZ_CP019418.1\|WP_001044459.1\|2917220_2917994_+\|fimbria/pilus-periplasmic-chaperone	unknown	unknown	gnl\|CDD\|185177
NZ_CP019418.1\|WP_017466195.1\|2919001_2919538_+\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185168
NZ_CP019418.1\|WP_023259805.1\|2904356_2906156_-\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|182862
NZ_CP019418.1\|WP_020437813.1\|2895419_2895968_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
NZ_CP019418.1\|WP_001199961.1\|2908382_2909054_-\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
NZ_CP019418.1\|WP_020437817.1\|2901808_2902543_-\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NZ_CP019418.1\|WP_000368586.1\|2895964_2897524_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
NZ_CP019418.1\|WP_000832396.1\|2918534_2919005_+\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185179
NZ_CP019418.1\|WP_000036734.1\|2909189_2910488_-\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NZ_CP019418.1\|WP_024143111.1\|2900642_2901596_+\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
NZ_CP019418.1\|WP_020437820.1\|2907040_2907838_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|224158
NZ_CP019418.1\|WP_000842511.1\|2913840_2914428_+\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185169
NZ_CP019418.1\|WP_023259806.1\|2912435_2913236_-\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569

Protein	Function_ID	Function_description	E-value
NZ_CP019418.1\|WP_000210863.1\|2910570_2912208_-\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NZ_CP019418.1\|WP_023259900.1\|2897535_2900199_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	0
NZ_CP019418.1\|WP_020437818.1\|2902644_2904357_-\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
NZ_CP019418.1\|WP_000108313.1\|2906590_2906953_+\|6-carboxytetrahydropterin-synthase-QueD	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	2.78454e-58
NZ_CP019418.1\|WP_076734763.1\|2914508_2917208_+\|fimbrial-biogenesis-outer-membrane-usher-protein	gnl\|CDD\|185176	PRK15273, PRK15273, fimbrial biogenesis outer membrane usher protein.	0
NZ_CP019418.1\|WP_000178258.1\|2918013_2918520_+\|fimbrial-protein	gnl\|CDD\|185178	PRK15275, PRK15275, putative fimbrial protein SteD; Provisional.	1.6337e-105
NZ_CP019418.1\|WP_020437812.1\|2894347_2895406_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	4.71017e-137
NZ_CP019418.1\|WP_001044459.1\|2917220_2917994_+\|fimbria/pilus-periplasmic-chaperone	gnl\|CDD\|185177	PRK15274, PRK15274, putative periplasmic fimbrial chaperone protein SteC; Provisional.	0
NZ_CP019418.1\|WP_017466195.1\|2919001_2919538_+\|fimbrial-protein	gnl\|CDD\|185168	PRK15260, PRK15260, fimbrial protein SteF; Provisional.	2.30226e-121
NZ_CP019418.1\|WP_023259805.1\|2904356_2906156_-\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
NZ_CP019418.1\|WP_020437813.1\|2895419_2895968_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	1.36817e-32
NZ_CP019418.1\|WP_001199961.1\|2908382_2909054_-\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	1.43874e-155
NZ_CP019418.1\|WP_020437817.1\|2901808_2902543_-\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	1.47425e-138
NZ_CP019418.1\|WP_000368586.1\|2895964_2897524_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	5.17383e-173
NZ_CP019418.1\|WP_000832396.1\|2918534_2919005_+\|fimbrial-protein	gnl\|CDD\|185179	PRK15276, PRK15276, putative fimbrial subunit SteE; Provisional.	1.41178e-100
NZ_CP019418.1\|WP_000036734.1\|2909189_2910488_-\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NZ_CP019418.1\|WP_024143111.1\|2900642_2901596_+\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
NZ_CP019418.1\|WP_020437820.1\|2907040_2907838_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|224158	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only].	5.22852e-102
NZ_CP019418.1\|WP_000842511.1\|2913840_2914428_+\|fimbrial-protein	gnl\|CDD\|185169	PRK15261, PRK15261, fimbrial protein SteA; Provisional.	6.76622e-100
NZ_CP019418.1\|WP_023259806.1\|2912435_2913236_-\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	4.77884e-158

>NZ_CP019418.1|WP_020437820.1|2907040_2907838_-|MBL-fold-metallo-hydrolase
MALRIRVLLENHKGAGADKSLKARPGLSLLVEDESTSILFDTGPDGSFMQNALAMGIDLSDVSAVVLSHGHYDHCGGVPWLPDNSRIICHPDIARERYAAMTFLGITRKIKKLSCEVDYSRYRMMYTRGPLPIGENFIWSGEIPVVAPEAYGIFGGHDAEPDSILDEGVLIYQSTKGLVIITGCGHRGIVNIVRHCQNITGIKRIYALVGGFHLRCASPFTMWRVRRFLQEHKPEKLCGCHCTGAWGRLWLPEITAPATGDVLRF
>NZ_CP019418.1|WP_000108313.1|2906590_2906953_+|6-carboxytetrahydropterin-synthase-QueD
MSTTLYKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFADLKAAFKPTYDRLDHYYLNDIPGLSNPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCVYRGE
>NZ_CP019418.1|WP_023259805.1|2904356_2906156_-|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit
MTTPAPLTGLLPLNPEQLARLQAATTDLTPEQLAWVSGYFWGVLNPRSGAVAVTPAPEGKMSGITLISASQTGNARRVAEALRDDLLAANLNVTLVNAGDYKFKQIASEKLLVIVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDVLKSRAPVAAPSQSVATGAVNDIHTSPYTKDAPLIATLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVMVDGKTLPLAEALEWHFELTVNTANIVENYATLTRSESLLPLVGDKAQLQHYAATTPIVDMVRFSPAQLDAEALIGLLRPLMPRLYSIASAQAEVESEVHVTVGVVRYDIEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPQTPVIMIGPGTGIAPFRAFMQQRAAEGAEGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLNRIDLAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDARRMAADVEKALLEVIAEFGGMDLESADEYLSELRVERRYQRDVY
>NZ_CP019418.1|WP_020437818.1|2902644_2904357_-|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGLETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDKWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQKAKIETLARDHGLMNAVKPQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGNRIGTRIPRMYQENITEPDILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>NZ_CP019418.1|WP_020437817.1|2901808_2902543_-|phosphoadenosine-phosphosulfate-reductase
MSKLDLNALNDLPKVDRVLALAETNAQLETLTAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQESRYGKLWEQGVEGIEKYNEINKVEPMNRALKELNAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>NZ_CP019418.1|WP_024143111.1|2900642_2901596_+|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMDVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGSKMTWHPELLQESISTLRKEVTGNAQIKTAVYEMMRPAEAPDHPLVEWQDSLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFSEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLV
>NZ_CP019418.1|WP_023259900.1|2897535_2900199_-|CRISPR-associated-helicase/endonuclease-Cas3
MSIYHYWGKSRRGETNGGDDYHLLCWHSLDVAAVGYWMVINNIYFIDHYLKKLGIQDKEQAAQFFAWILCWHDIGKFAHSFQQLYRHEALNIFNEPTRHYEKIAHTTLGYMLWNSWLSECPELFPPSSLSARKSKRVMALWMPVTTGHHGRPPEAIQELDHFRQQDKDAARDFLLRIKALFPLITLPEAWDEDEGIDQFQQLSWFISAAVVLADWTGSASRYFPRTAEKMPVDTYWQQALAKAQTAITLFPSAANVSAFTGIETLFPFIQHPTPLQQKALELDINVDGAQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLYFGLPTMATANAMFERMANTWLALYQPDSRPSLILAHSARRLMDRFNQSIWSVTLSGTEEPDEAQPDSQGCAAWFADSNKKALLAEVGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAWMSRILEGLIERQASNGNATILLSATLSQQQRDKLVAAFSRGVRRSVQAPLLGHDDYPWLTQVTQTELISQRVDTRKEVERSVDIGWLHSEESCLERIGEAVEKGNCIAWIRNSVDDAIRIYRQLQLSKVVATENLLLFHSRFAFHDRQRIESQMLNLFGKQSGAQRAGKVIIATQVIEQSLDIDCDEMISDLAPVDLLIQRAGRLQRHIRDRNGLVKKSGQDERETPVLRILAPEWDDAPRENWLSSAMRNSAYVYPDHGRMWLTQRILREQGTIRMPQSARLLIESVYGEDVNMPVGFAKTEQLQKGKFYCDRAFARQMLLNFAPGYCAEISDSLPEKMSTRLAEESVTLWLAKIVDGVVTPYTSGEHAWEMSVLRVRQSWWNKHKDEFEKLDGEPLRKWCAQQHQDKDFATVIVVTDCAACGYSANEGLIGMMGE
>NZ_CP019418.1|WP_000368586.1|2895964_2897524_-|type-I-E-CRISPR-associated-protein-Cse1/CasA
MDNFSLLTTPWLPVRFKDGSTGKLAPVNLADENVVDIAATRADLQGAAWQFLLGLLQCSIAPKRYKNWEDIWFDGLHADALHKALAPLEHAFQFGAETPSFMQDFEELPDNKITIASLLPETPGIQTTELNTDHFIKRGVMECFCPHCAALALFSMQLNAPSGGQGYRTGLRGGGPLTTLIELQEYQGERQTPLWRKLWLNVMPQDAADLPLPVVYDAAVFPWLAATRTSEPPAHTITTDEQVNKLQAYWGMPRRIRLDFATIRQGVCNICGNNSDELLIQMLVKNYGVNYDRWRHPLTPHRLQIKNSKGFEPVITQPGGLLWRDWLGLSQENPTEKNTEYPAQVIKVFNARELRNIKVGLWGFGADFKKMKIRCWYEHHFPLLMTEGLIPDLRKATQTATRLLSLLRSALKEAWFANAKGARGDFSFIDIDFWNLTQGRFLNLIHDLENGHKPDERLNKWQRELWLFTRCYFDDHVFTNPYESSDLERIMKARKKYFTSSAEKQSAKAAKAKKQEAAE
>NZ_CP019418.1|WP_020437813.1|2895419_2895968_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSIVQEDHKATLRKWHEDLQEKRGARASLRRSKTVNEACLSEGFHLLLMQTHSLWKNKADWHVTALAITAVLAAHIKFIDERQSFATQLGQKKSGDNPVMSKLRFSRLSAVKTPEELLRQLRRAVQLLDGSVNLISLADDIFRWCQEQDDLLSHHRRQQRPTEFLRIRWALEYYQAGDNEQD
>NZ_CP019418.1|WP_020437812.1|2894347_2895406_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGAKRLRISSQSLKRAWRTSELFEQALAGNIGIRTGRIAREAAQILIDSGIDAKKAVEYVEKIANCFGKVKAEKKPKDELTNAETEQLVHISPAEFEGVKALAHRLAEEKRAPQEEELALLRKDRMAVDIAMFGRMLANKPDFNVEAACQVAHAFGVSETIIEDDFFTAVDDLRQASAEDAGAGHLGETGFGSALFYTYICIDKDLLVKNLNGNEELANKTLRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTDQLNVAVKRITSLHKNMNKVYGQRTDTASFDVMNQQGSMKDVLDFICA
>NZ_CP019418.1|WP_001199961.1|2908382_2909054_-|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILAKTKESDKWGAASSEDLLAVINRQGYTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA
>NZ_CP019418.1|WP_000036734.1|2909189_2910488_-|phosphopyruvate-hydratase
MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVGAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTENKSNFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKGKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>NZ_CP019418.1|WP_000210863.1|2910570_2912208_-|CTP-synthase-(glutamine-hydrolyzing)
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQLAVDIGREHALFMHLTLVPYLAAAGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISMKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIYEEANPAGEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVTVNIKLIDSQDVETRGVEILKDLDAILIPGGFGYRGVEGKIATARYARENNIPYLGICLGMQVALIEFARNVAGMDNANSTEFVPDCKYPVVALITEWRDEDGNVEVRSEKSDLGGTMRLGAQQCQLSDDSLVRQLYGASTIVERHRHRYEVNNMLLKQIEAAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAANEHQKRQAK
>NZ_CP019418.1|WP_023259806.1|2912435_2913236_-|nucleoside-triphosphate-pyrophosphohydrolase
MTTNHQIDRLLTLMQRLRDPENGCPWDKEQTFASIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFHVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFGELSADNSEEALVRWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCSNVGFDWTTLGPVVDKVYEEIDEVMFEARQAVVDQAKLEEEMGDLLFATVNMARHLGTKAELALQKANDKFERRFREVERIVAARGLEMTGVDLETMEEVWQEVKRQEIDL
>NZ_CP019418.1|WP_000842511.1|2913840_2914428_+|fimbrial-protein
MKSSHFCKLAVTASLVMGIVSGAQAAGSNTAKVTFLGNIVDSPCSVTLDTEDQTVNMGSSIGNGTLSNGKTTINNARTFHIDLEGCTWATEKNMNVVFTTGSGTTAATGATDNLALMKTDGTGAISNVSLAIGDAGKNNIKLGDTYTQAIADLDGDSILDEKQSLNFTAWLVGAATGTVGTGEFSSAANVTISYL
>NZ_CP019418.1|WP_076734763.1|2914508_2917208_+|fimbrial-biogenesis-outer-membrane-usher-protein
MMNNTWKSVLCPIACGVGMLLSVSPYSASGKDIEFNTDFLDVKNRDNVNIAQFSRKGFILPGVYLLQIKINGQTLPQEFPVNWVIPEHDPQGSEVCAEPELVTQLGIKPELAEKLVWITHGERQCLAPDSLKGMDFQADLGHSTLLVNLPQAYMEYSDVDWDPPARWDNGIPGIILDYNINNQLRHDQESGSEEQSISGNGTLGANLGAWRLRADWQASYDHRDDDENTSTLHDQSWSRYYAYRALPTLGAKLTLGESYLQSDVFDSFNYIGASVISDDQMLPPKLRGYAPEIVGIARSNAKVKVSWQGRVLYETQVPAGPFRIQDLNQSVSGTLHVTVEEQNGQTQEFDVNTASVPFLTRPGMVRYKMALGRPQDWDHHPITGTFASAEASWGVTNGWSLYGGAIGESNYQAVALGSGKDLGVVGAVAVDITHSIAHMPQDDGFDGETLQGNSYRISYSRDFDEIDSRLTFAGYRFSEKNFMSMSDYLDAKTYHHLNAGHEKERYTVTYNQNFREQGMSAYFSYSRSTFWDSPDQSNYNLSLSWYFDLGSIKNLSASLNGYRSEYNGDKDDGVYISLSVPWGNDSISYNGTFNGSQHRNQLGYSGHSQNGDNWQLHVGQDEQGAQADGYYSHQGALTDIDLSADYEEGSYRSLGMSLRGGMTLTTQGGALHRGSLAGSTRLLVDTDGIADVPVSGNGSPTSTNIFGKAVIADVGSYSRSLARIDLNKLPEKAEATKSVVQITLTEGAIGYRHFDVVSGEKMMAVFRLADGDFPPFGAEVKNERQQQLGLVADDGNAWLAGVKAGETLKVFWDGAAQCEASLPSTFTPELLANALLLPCKMLEGQPPTAPQKSSPLPAQPLIQEHTQTDGQPAAPVATTTQTPPIPLADNHAVNRKDME
>NZ_CP019418.1|WP_001044459.1|2917220_2917994_+|fimbria/pilus-periplasmic-chaperone
MNKTNHFKRQALIASVLLAAPLVSHSAIVPDRTRVIFNGNENSITVTLKNGNATLPYLAQAWLEDDKFAKDTRYFTALPPLQRIEPKSDGQVKVQPLPAAASLPQDRESLFYFNVREIPPKSDKPNTLQLALQTRIKFFYRPVAVARQVDKTHPWQTKLTLTYQGDGVIFDNPTPFYLVISNAGSKENETASGFKNLLIAPREKVTSPIKGASLGSSPVVGYVDDYGGHRLLVFTCSGNTCKVNEEKTRDAEKKANK
>NZ_CP019418.1|WP_000178258.1|2918013_2918520_+|fimbrial-protein
MTMLTRWKILVLLCGGFVTGTEAAGTKTVQLELHLVVTQPPPCTIGGASVEFGDVLTTKVGDASQTKPVGYSLNCDGRASDYLKLQIQGTTTTISGEQVLQTSVQGLGIRIQQAGNKQLVPVGITDWLNFTLSGSNGPELEAVPVKEPTTQLAGGDFNASATLVVDYQ
>NZ_CP019418.1|WP_000832396.1|2918534_2919005_+|fimbrial-protein
MKRVLILTLLITQFACADNLTFHGKLINPPACTINNGETLEVSFGSVIIDNIDGVNYLTEIPWTLTCDSSFRDDALTFTLSYLGTATPYSANALTTNVPELGIELQQNGTVFPPGTSLTIDESSLPTLKAVPVKQPGKEPAEGDFEAFATLQVDYQ
>NZ_CP019418.1|WP_017466195.1|2919001_2919538_+|fimbrial-protein
MNRIFQTAGHLIGGVMLWAVCNTLPAATPNVHYSGKLVAGACNLVVDNDTMATVDFHTIGSDNFDASGQTTPVPFTLSLQDCKTALANGVLVTFQGVEDSTLPGLLALEPSSEASGFAIGVETAAQQPVSINATVGTAFVLKEGITTINLQARLQKYAGEEVMPGEFKGSATVSFEYQ

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP019418_1	1.10\|2891531\|32\|NZ_CP019418\|CRISPRCasFinder,CRT,PILER-CR	2891531-2891562	32	NZ_CP019418.1	3080455-3080486	1	0.969
NZ_CP019418_2	2.2\|2908027\|31\|NZ_CP019418\|CRISPRCasFinder	2908027-2908057	31	NZ_CP019418.1	724832-724862	1	0.968

1. spacer 1.10|2891531|32|NZ_CP019418|CRISPRCasFinder,CRT,PILER-CR matches to position: 3080455-3080486, mismatch: 1, identity: 0.969

gcgcttattcgtcagccaatcgacgaggctat	CRISPR spacer
gcggttattcgtcagccaatcgacgaggctat	Protospacer
*** ****************************

2. spacer 2.2|2908027|31|NZ_CP019418|CRISPRCasFinder matches to position: 724832-724862, mismatch: 1, identity: 0.968

aagggagccaaatctgccgcatgaccatcgt	CRISPR spacer
aagggagccaaatctgccgcatgaccgtcgt	Protospacer
**************************.****

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP019418_1	1.4\|2891165\|32\|NZ_CP019418\|CRISPRCasFinder,CRT,PILER-CR	2891165-2891196	32	CP051275	Salmonella phage SW-37, complete genome	24295-24326	1	0.969
NZ_CP019418_1	1.4\|2891165\|32\|NZ_CP019418\|CRISPRCasFinder,CRT,PILER-CR	2891165-2891196	32	KC139516	Salmonella phage FSL SP-016, partial genome	43971-44002	1	0.969
NZ_CP019418_1	1.4\|2891165\|32\|NZ_CP019418\|CRISPRCasFinder,CRT,PILER-CR	2891165-2891196	32	JQ182729	Enterobacterial phage mEp390, complete genome	23951-23982	3	0.906
NZ_CP019418_1	1.3\|2891104\|32\|NZ_CP019418\|CRISPRCasFinder,CRT,PILER-CR	2891104-2891135	32	NZ_KY296095	Pseudomonas aeruginosa strain 14057 plasmid p14057-KPC, complete sequence	32689-32720	6	0.812
NZ_CP019418_1	1.3\|2891104\|32\|NZ_CP019418\|CRISPRCasFinder,CRT,PILER-CR	2891104-2891135	32	NZ_CP024631	Pseudomonas aeruginosa strain PA59 plasmid unnamed1, complete sequence	7133-7164	6	0.812
NZ_CP019418_1	1.3\|2891104\|32\|NZ_CP019418\|CRISPRCasFinder,CRT,PILER-CR	2891104-2891135	32	NZ_MH734334	Pseudomonas aeruginosa strain 1011 plasmid p1011-KPC2, complete sequence	45685-45716	6	0.812
NZ_CP019418_1	1.3\|2891104\|32\|NZ_CP019418\|CRISPRCasFinder,CRT,PILER-CR	2891104-2891135	32	NZ_CP020561	Pseudomonas aeruginosa strain CR1 plasmid pCR1, complete sequence	30704-30735	7	0.781
NZ_CP019418_1	1.3\|2891104\|32\|NZ_CP019418\|CRISPRCasFinder,CRT,PILER-CR	2891104-2891135	32	NZ_MN433456	Pseudomonas aeruginosa strain PAB546 plasmid unnamed, complete sequence	30247-30278	7	0.781
NZ_CP019418_1	1.3\|2891104\|32\|NZ_CP019418\|CRISPRCasFinder,CRT,PILER-CR	2891104-2891135	32	NC_021709	Alteromonas mediterranea 615 plasmid unnamed, complete sequence	120479-120510	8	0.75
NZ_CP019418_1	1.2\|2891043\|32\|NZ_CP019418\|CRISPRCasFinder,CRT,PILER-CR	2891043-2891074	32	MN694646	Marine virus AFVG_250M1067, complete genome	6939-6970	9	0.719
NZ_CP019418_1	1.2\|2891043\|32\|NZ_CP019418\|CRISPRCasFinder,CRT,PILER-CR	2891043-2891074	32	MN694813	Marine virus AFVG_250M1071, complete genome	5735-5766	9	0.719
NZ_CP019418_1	1.2\|2891043\|32\|NZ_CP019418\|CRISPRCasFinder,CRT,PILER-CR	2891043-2891074	32	MN694441	Marine virus AFVG_250M1066, complete genome	33070-33101	9	0.719
NZ_CP019418_1	1.2\|2891043\|32\|NZ_CP019418\|CRISPRCasFinder,CRT,PILER-CR	2891043-2891074	32	MN694492	Marine virus AFVG_250M1068, complete genome	6277-6308	9	0.719
NZ_CP019418_1	1.2\|2891043\|32\|NZ_CP019418\|CRISPRCasFinder,CRT,PILER-CR	2891043-2891074	32	MN693639	Marine virus AFVG_250M1070, complete genome	33106-33137	9	0.719
NZ_CP019418_1	1.2\|2891043\|32\|NZ_CP019418\|CRISPRCasFinder,CRT,PILER-CR	2891043-2891074	32	MN694318	Marine virus AFVG_250M1065, complete genome	5478-5509	9	0.719
NZ_CP019418_1	1.2\|2891043\|32\|NZ_CP019418\|CRISPRCasFinder,CRT,PILER-CR	2891043-2891074	32	MN693657	Marine virus AFVG_250M1069, complete genome	6020-6051	9	0.719
NZ_CP019418_1	1.4\|2891165\|32\|NZ_CP019418\|CRISPRCasFinder,CRT,PILER-CR	2891165-2891196	32	NZ_AP022571	Mycolicibacterium poriferae strain JCM 12603 plasmid pJCM12603, complete sequence	153476-153507	10	0.688
NZ_CP019418_1	1.1\|2890982\|32\|NZ_CP019418\|CRISPRCasFinder,CRT	2890982-2891013	32	CP054927	Streptomyces fulvissimus strain NA06532 plasmid unnamed1, complete sequence	47822-47853	11	0.656

1. spacer 1.4|2891165|32|NZ_CP019418|CRISPRCasFinder,CRT,PILER-CR matches to CP051275 (Salmonella phage SW-37, complete genome) position: , mismatch: 1, identity: 0.969

tggaccgatggggccaacatcgccgaacgtgg	CRISPR spacer
cggaccgatggggccaacatcgccgaacgtgg	Protospacer
.*******************************

2. spacer 1.4|2891165|32|NZ_CP019418|CRISPRCasFinder,CRT,PILER-CR matches to KC139516 (Salmonella phage FSL SP-016, partial genome) position: , mismatch: 1, identity: 0.969

tggaccgatggggccaacatcgccgaacgtgg	CRISPR spacer
tggaccgatggggccaacatcgccgaatgtgg	Protospacer
***************************.****

3. spacer 1.4|2891165|32|NZ_CP019418|CRISPRCasFinder,CRT,PILER-CR matches to JQ182729 (Enterobacterial phage mEp390, complete genome) position: , mismatch: 3, identity: 0.906

tggaccgatggggccaacatcgccgaacgtgg	CRISPR spacer
tggacctatggggccaacatcaccgaacgtag	Protospacer
****** **************.********.*

4. spacer 1.3|2891104|32|NZ_CP019418|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KY296095 (Pseudomonas aeruginosa strain 14057 plasmid p14057-KPC, complete sequence) position: , mismatch: 6, identity: 0.812

atattgatactgttctcaagcgccgttttagc	CRISPR spacer
atattgatgctgttctccagcgcccgatcagc	Protospacer
********.******** ******   *.***

5. spacer 1.3|2891104|32|NZ_CP019418|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP024631 (Pseudomonas aeruginosa strain PA59 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.812

atattgatactgttctcaagcgccgttttagc	CRISPR spacer
atattgatgctgttctccagcgcccgatcagc	Protospacer
********.******** ******   *.***

6. spacer 1.3|2891104|32|NZ_CP019418|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MH734334 (Pseudomonas aeruginosa strain 1011 plasmid p1011-KPC2, complete sequence) position: , mismatch: 6, identity: 0.812

atattgatactgttctcaagcgccgttttagc	CRISPR spacer
atattgatgctgttctccagcgcccgatcagc	Protospacer
********.******** ******   *.***

7. spacer 1.3|2891104|32|NZ_CP019418|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020561 (Pseudomonas aeruginosa strain CR1 plasmid pCR1, complete sequence) position: , mismatch: 7, identity: 0.781

atattgatactgttctcaagcgccgttttagc	CRISPR spacer
atattgatgctgttctccagcgcccgatccgc	Protospacer
********.******** ******   *. **

8. spacer 1.3|2891104|32|NZ_CP019418|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MN433456 (Pseudomonas aeruginosa strain PAB546 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

atattgatactgttctcaagcgccgttttagc	CRISPR spacer
atattgatgctgttctccagcgcccgatccgc	Protospacer
********.******** ******   *. **

9. spacer 1.3|2891104|32|NZ_CP019418|CRISPRCasFinder,CRT,PILER-CR matches to NC_021709 (Alteromonas mediterranea 615 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

atattgatactgttctcaagcgccgttttagc	CRISPR spacer
atggtatcgctgttctcaatcgcctttttagc	Protospacer
**. *. ..********** **** *******

10. spacer 1.2|2891043|32|NZ_CP019418|CRISPRCasFinder,CRT,PILER-CR matches to MN694646 (Marine virus AFVG_250M1067, complete genome) position: , mismatch: 9, identity: 0.719

tgatgcaggcgtttacgtactgcgagatgaag	CRISPR spacer
ggaaacaggcgttgacatactgcgagattgct	Protospacer
 ** .******** **.*********** .

11. spacer 1.2|2891043|32|NZ_CP019418|CRISPRCasFinder,CRT,PILER-CR matches to MN694813 (Marine virus AFVG_250M1071, complete genome) position: , mismatch: 9, identity: 0.719

tgatgcaggcgtttacgtactgcgagatgaag	CRISPR spacer
ggaaacaggcgttgacatactgcgagattgct	Protospacer
 ** .******** **.*********** .

12. spacer 1.2|2891043|32|NZ_CP019418|CRISPRCasFinder,CRT,PILER-CR matches to MN694441 (Marine virus AFVG_250M1066, complete genome) position: , mismatch: 9, identity: 0.719

tgatgcaggcgtttacgtactgcgagatgaag	CRISPR spacer
ggaaacaggcgttgacatactgcgagattgct	Protospacer
 ** .******** **.*********** .

13. spacer 1.2|2891043|32|NZ_CP019418|CRISPRCasFinder,CRT,PILER-CR matches to MN694492 (Marine virus AFVG_250M1068, complete genome) position: , mismatch: 9, identity: 0.719

tgatgcaggcgtttacgtactgcgagatgaag	CRISPR spacer
ggaaacaggcgttgacatactgcgagattgct	Protospacer
 ** .******** **.*********** .

14. spacer 1.2|2891043|32|NZ_CP019418|CRISPRCasFinder,CRT,PILER-CR matches to MN693639 (Marine virus AFVG_250M1070, complete genome) position: , mismatch: 9, identity: 0.719

tgatgcaggcgtttacgtactgcgagatgaag	CRISPR spacer
ggaaacaggcgttgacatactgcgagattgct	Protospacer
 ** .******** **.*********** .

15. spacer 1.2|2891043|32|NZ_CP019418|CRISPRCasFinder,CRT,PILER-CR matches to MN694318 (Marine virus AFVG_250M1065, complete genome) position: , mismatch: 9, identity: 0.719

tgatgcaggcgtttacgtactgcgagatgaag	CRISPR spacer
ggaaacaggcgttgacatactgcgagattgct	Protospacer
 ** .******** **.*********** .

16. spacer 1.2|2891043|32|NZ_CP019418|CRISPRCasFinder,CRT,PILER-CR matches to MN693657 (Marine virus AFVG_250M1069, complete genome) position: , mismatch: 9, identity: 0.719

tgatgcaggcgtttacgtactgcgagatgaag	CRISPR spacer
ggaaacaggcgttgacatactgcgagattgct	Protospacer
 ** .******** **.*********** .

17. spacer 1.4|2891165|32|NZ_CP019418|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP022571 (Mycolicibacterium poriferae strain JCM 12603 plasmid pJCM12603, complete sequence) position: , mismatch: 10, identity: 0.688

tggaccgatggggccaacatcgccgaacgtgg	CRISPR spacer
cacctggatgggggccacatcgccgaacgagt	Protospacer
..  . ******* * ************* *

18. spacer 1.1|2890982|32|NZ_CP019418|CRISPRCasFinder,CRT matches to CP054927 (Streptomyces fulvissimus strain NA06532 plasmid unnamed1, complete sequence) position: , mismatch: 11, identity: 0.656

ttttcagcccttgccgactgcggaacgcccct	CRISPR spacer
cgccgcacccttgccgactgcgggatgcccga	Protospacer
. ..  .****************.*.****

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

977888 : 985201

Dickeya_phage(16.67%)

protease

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001201751.1\|977888_979007_+	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	1.4e-08	38.9
WP_000125873.1\|979003_980950_+	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	2.0e-39	43.1
WP_000447499.1\|981079_981301_-	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	9.3e-18	64.2
WP_000520787.1\|981624_981945_+\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	3.5e-13	45.7
WP_000934064.1\|981975_984252_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	6.2e-165	42.3
WP_001117984.1\|984464_984662_-	hypothetical protein	NA	NA	NA	NA
WP_001531374.1\|984823_985201_-	hypothetical protein	A0A077KET4	Ralstonia_phage	1.7e-19	40.2

DBSCAN-SWA_2

1988783 : 1996053

Morganella_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001157315.1\|1988783_1990214_-	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	1.0e-104	57.4
WP_001748531.1\|1990287_1990983_-	phosphohydrolase	A0A1D6Y7U0	Golden_Marseillevirus	2.8e-07	27.1
WP_000107434.1\|1991062_1991374_-	hypothetical protein	NA	NA	NA	NA
WP_017465542.1\|1992025_1993237_+	porin OmpC	Q1MVN1	Enterobacteria_phage	4.4e-109	56.2
WP_024131109.1\|1993496_1993685_-	hypothetical protein	NA	NA	NA	NA
WP_000208509.1\|1993695_1993908_-	cold-shock protein	A0A1W6JNX5	Morganella_phage	3.9e-21	70.0
WP_000457663.1\|1994362_1995631_-	Y-family DNA polymerase	I6RSM4	Salmonella_phage	9.3e-227	91.9
WP_000394197.1\|1995633_1996053_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	8.5e-36	60.5

DBSCAN-SWA_3

2087406 : 2097913

Enterobacteria_phage(37.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000126351.1\|2087406_2088720_-	lipopolysaccharide biosynthesis protein RfbH	H8ZJ36	Ostreococcus_tauri_virus	9.1e-52	35.1
WP_000565902.1\|2088746_2089826_-	CDP-glucose 4,6-dehydratase	A0A222YY99	Synechococcus_phage	1.3e-16	24.5
WP_000648783.1\|2089830_2090604_-	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA
WP_020437413.1\|2090619_2091594_-	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA
WP_000973714.1\|2091599_2092151_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	1.0e-52	58.0
WP_000857530.1\|2092151_2093030_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	5.1e-107	64.8
WP_001023659.1\|2093077_2093977_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	5.1e-30	36.0
WP_000697840.1\|2093976_2095062_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.2e-102	53.9
WP_000981469.1\|2095438_2096332_-	GalU regulator GalF	A0A127AW70	Bacillus_phage	4.8e-44	42.2
WP_020437414.1\|2096509_2097913_-	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	2.3e-21	27.1

DBSCAN-SWA_4

2176366 : 2185537

Enterobacteria_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000195330.1\|2176366_2178400_+\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	1.0e-54	27.6
WP_000703137.1\|2178640_2179099_+	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	8.4e-53	72.5
WP_023259641.1\|2179270_2179801_+	YehR family lipoprotein	NA	NA	NA	NA
WP_000950413.1\|2179857_2180325_-	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	3.9e-74	90.3
WP_000598637.1\|2180371_2181091_-	two-component system response regulator BtsR	NA	NA	NA	NA
WP_000272850.1\|2181087_2182773_-	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	4.8e-279	91.3
WP_001240417.1\|2182995_2183727_+	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	4.5e-101	87.9
WP_001261696.1\|2183786_2183894_+	protein YohO	NA	NA	NA	NA
WP_000824854.1\|2183874_2184606_-	ABC transporter permease	NA	NA	NA	NA
WP_000569166.1\|2184589_2185537_-	ABC transporter ATP-binding protein	F2Y1V5	Organic_Lake_phycodnavirus	3.7e-10	27.8

DBSCAN-SWA_5

2715691 : 2724625

Enterobacteria_phage(85.71%)

integrase

attL 2713062:2713077|attR 2719842:2719857

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2713062:2713077	attL	NA	NA	NA	NA
WP_023196286.1\|2715691_2716885_+\|integrase	tyrosine-type recombinase/integrase	A0A1B5FPC6	Escherichia_phage	8.2e-108	50.4
WP_021000667.1\|2716915_2717353_-	hypothetical protein	NA	NA	NA	NA
WP_023196287.1\|2717520_2718414_-	DUF4747 family protein	NA	NA	NA	NA
WP_023259734.1\|2718821_2719388_-	bacteriophage polarity suppression protein	Q7M2A1	Enterobacteria_phage	6.5e-55	62.2
WP_000984211.1\|2719404_2719650_-	ogr/Delta-like zinc finger family protein	Q7M294	Enterobacteria_phage	6.3e-31	76.5
WP_021000671.1\|2719646_2720384_-	hypothetical protein	Q7M2A2	Enterobacteria_phage	4.4e-80	64.4
2719842:2719857	attR	NA	NA	NA	NA
WP_001604627.1\|2720921_2721188_+	AlpA family transcriptional regulator	Q7M299	Enterobacteria_phage	1.7e-29	70.5
WP_023259733.1\|2721184_2721736_+	ash family protein	Q7M2A7	Enterobacteria_phage	8.6e-36	71.3
WP_001604623.1\|2721732_2721960_+	hypothetical protein	NA	NA	NA	NA
WP_023259732.1\|2721956_2722277_+	DUF5375 domain-containing protein	NA	NA	NA	NA
WP_021000674.1\|2722291_2724625_+	toprim domain-containing protein	Q7M2A8	Enterobacteria_phage	0.0e+00	84.5

DBSCAN-SWA_6

4216869 : 4261643

Burkholderia_phage(36.36%)

tail,tRNA,holin,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001177097.1\|4216869_4217385_-\|tail	tail fiber assembly protein	A0A0U2QV64	Escherichia_phage	3.4e-34	41.2
WP_000368203.1\|4217394_4218876_-\|tail	tail fiber protein	A0A0M3ULF6	Salmonella_phage	1.3e-51	51.7
WP_000359500.1\|4218878_4219511_-\|tail	phage tail protein I	Q6QI98	Burkholderia_phage	6.6e-24	56.4
WP_020437568.1\|4219503_4220619_-\|plate	baseplate J/gp47 family protein	Q6QI99	Burkholderia_phage	3.4e-100	51.7
WP_001093501.1\|4220609_4220969_-	GPW/gp25 family protein	Q6QIA0	Burkholderia_phage	2.8e-35	64.2
WP_000632048.1\|4221132_4222680_-	hypothetical protein	B9UDL6	Salmonella_phage	2.5e-48	29.9
WP_020437570.1\|4222679_4223609_-	glycosyltransferase family 2 protein	S5FKN0	Shigella_phage	3.9e-150	83.8
WP_000593184.1\|4223605_4223968_-	GtrA family protein	U5P0S6	Shigella_phage	9.6e-44	70.8
WP_017465888.1\|4224295_4225018_-\|plate	phage baseplate assembly protein V	A0A067ZIM2	Vibrio_phage	3.9e-12	42.0
WP_017465889.1\|4225027_4226071_-	phage late control D family protein	A4JWL3	Burkholderia_virus	6.5e-77	45.9
WP_001269716.1\|4226058_4226268_-\|tail	tail protein X	A4JWL2	Burkholderia_virus	9.8e-17	60.3
WP_020437572.1\|4226267_4227221_-\|tail	phage tail protein	A4JWL1	Burkholderia_virus	1.0e-36	51.5
WP_020437573.1\|4227220_4229572_-\|tail	phage tail tape measure protein	A4JWL0	Burkholderia_virus	3.6e-67	31.3
WP_001185655.1\|4229668_4229797_-\|tail	GpE family phage tail protein	NA	NA	NA	NA
WP_020437574.1\|4229756_4230074_-\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_020437575.1\|4230125_4230650_-\|tail	phage major tail tube protein	Q6QIA9	Burkholderia_phage	3.6e-68	69.5
WP_000729853.1\|4230649_4232077_-\|tail	phage tail sheath family protein	A4JWK5	Burkholderia_virus	1.4e-194	70.9
WP_000875314.1\|4232066_4232264_-	hypothetical protein	Q6QIB1	Burkholderia_phage	8.6e-07	52.9
WP_000449439.1\|4232260_4232716_-	Gp37 family protein	NA	NA	NA	NA
WP_000777267.1\|4232874_4233189_-	hypothetical protein	Q6QIC4	Burkholderia_phage	8.3e-20	48.2
WP_020437576.1\|4233201_4233807_-	lytic transglycosylase domain-containing protein	Q5ZQZ1	Pseudomonas_phage	1.4e-60	59.9
WP_001226439.1\|4233809_4234097_-\|holin	putative holin	Q6QIC8	Burkholderia_phage	3.0e-16	48.1
WP_000615248.1\|4234673_4235021_+	DNA-binding protein	Q6QIE8	Burkholderia_phage	4.9e-21	51.5
WP_000136394.1\|4235151_4236501_-	lysine-sensitive aspartokinase 3	NA	NA	NA	NA
WP_000790028.1\|4236845_4238495_+	glucose-6-phosphate isomerase	NA	NA	NA	NA
WP_001541297.1\|4238938_4239181_+	outer membrane protein	NA	NA	NA	NA
WP_165418218.1\|4239214_4239883_+	YjbF family lipoprotein	NA	NA	NA	NA
WP_000977979.1\|4239879_4240617_+	capsule biosynthesis GfcC family protein	NA	NA	NA	NA
WP_000750804.1\|4240616_4242713_+	YjbH domain-containing protein	NA	NA	NA	NA
WP_000982749.1\|4242855_4243266_+	phosphate-starvation-inducible protein PsiE	NA	NA	NA	NA
WP_001252085.1\|4243431_4244322_-	maltose ABC transporter permease MalG	NA	NA	NA	NA
WP_000382573.1\|4244336_4245881_-	maltose ABC transporter permease MalF	NA	NA	NA	NA
WP_000695415.1\|4246012_4247203_-	maltose/maltodextrin ABC transporter substrate-binding protein MalE	NA	NA	NA	NA
WP_000179176.1\|4247564_4248674_+	maltose/maltodextrin ABC transporter ATP-binding protein MalK	Q6GZ03	Mycoplasma_phage	6.2e-17	47.2
WP_000973642.1\|4248762_4250121_+	maltoporin	NA	NA	NA	NA
WP_000782497.1\|4250284_4251202_+	maltose operon protein MalM	NA	NA	NA	NA
WP_000019230.1\|4251382_4251880_+	chorismate lyase	NA	NA	NA	NA
WP_000455249.1\|4251893_4252766_+	4-hydroxybenzoate octaprenyltransferase	NA	NA	NA	NA
WP_000017360.1\|4252864_4255285_-	glycerol-3-phosphate 1-O-acyltransferase PlsB	NA	NA	NA	NA
WP_000002900.1\|4255455_4255824_+	diacylglycerol kinase	NA	NA	NA	NA
WP_000646079.1\|4255932_4256541_+	repressor LexA	Q9G0C2	Lactococcus_phage	1.0e-13	38.0
WP_001128117.1\|4256719_4258045_+	MATE family efflux transporter DinF	NA	NA	NA	NA
WP_001575282.1\|4258041_4258155_+	hypothetical protein	NA	NA	NA	NA
WP_001030592.1\|4258176_4258386_+	CsbD family protein	NA	NA	NA	NA
WP_000416271.1\|4258484_4259000_-	zinc uptake transcriptional repressor Zur	NA	NA	NA	NA
WP_001039335.1\|4259246_4260557_+	conjugal transfer protein TraF	NA	NA	NA	NA
WP_020437579.1\|4260644_4261643_+\|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP019418

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection