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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP017641 Fuerstia marisgermanicae strain NH11 chromosome, complete genome 5 crisprs PrimPol,DinG,csa3,RT,DEDDh,cas3,csm5gr7,cas9,cas1,cas2 0 7 19 0

Results visualization

1. NZ_CP017641
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017641_1 997810-997907 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017641_2 2610288-2610547 Orphan NA
5 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017641_3 2804488-2804583 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017641_4 6492017-6492776 orTypeII NA
11 spacers
cas2,cas1,cas9

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017641_5 8358467-8358561 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP017641_4 4.6|6492381|30|NZ_CP017641|PILER-CR,CRISPRCasFinder,CRT 6492381-6492410 30 NC_014718 Paraburkholderia rhizoxinica HKI 454 plasmid pBRH01, complete sequence 62315-62344 4 0.867
NZ_CP017641_2 2.1|2610308|28|NZ_CP017641|CRT 2610308-2610335 28 NC_014309 Ralstonia solanacearum CFBP2957 plasmid RCFBPv3_mp, complete genome 937353-937380 6 0.786
NZ_CP017641_4 4.4|6492249|30|NZ_CP017641|PILER-CR,CRISPRCasFinder,CRT 6492249-6492278 30 MN693582 Marine virus AFVG_25M154, complete genome 26822-26851 6 0.8
NZ_CP017641_4 4.4|6492249|30|NZ_CP017641|PILER-CR,CRISPRCasFinder,CRT 6492249-6492278 30 MN693522 Marine virus AFVG_25M153, complete genome 27211-27240 6 0.8
NZ_CP017641_4 4.4|6492249|30|NZ_CP017641|PILER-CR,CRISPRCasFinder,CRT 6492249-6492278 30 MN693051 Marine virus AFVG_25M152, complete genome 32375-32404 6 0.8
NZ_CP017641_4 4.7|6492447|30|NZ_CP017641|PILER-CR,CRISPRCasFinder,CRT 6492447-6492476 30 NZ_CP026419 Acinetobacter sp. ACNIH2 plasmid pACI-6db8, complete sequence 30387-30416 7 0.767
NZ_CP017641_4 4.1|6492053|29|NZ_CP017641|PILER-CR,CRISPRCasFinder,CRT 6492053-6492081 29 MH622939 Siphoviridae sp. isolate ctbf_3, complete genome 37639-37667 8 0.724
NZ_CP017641_4 4.9|6492579|30|NZ_CP017641|PILER-CR,CRISPRCasFinder,CRT 6492579-6492608 30 NZ_CP026333 Pseudomonas sp. XWY-1 plasmid pXWY, complete sequence 305948-305977 8 0.733
NZ_CP017641_4 4.8|6492513|30|NZ_CP017641|PILER-CR,CRISPRCasFinder,CRT 6492513-6492542 30 NZ_CP049158 Caballeronia sp. SBC1 plasmid pSBC1_2, complete sequence 1483348-1483377 9 0.7
NZ_CP017641_4 4.8|6492513|30|NZ_CP017641|PILER-CR,CRISPRCasFinder,CRT 6492513-6492542 30 NZ_CP049318 Caballeronia sp. SBC2 plasmid pSBC2-2, complete sequence 1488016-1488045 9 0.7

1. spacer 4.6|6492381|30|NZ_CP017641|PILER-CR,CRISPRCasFinder,CRT matches to NC_014718 (Paraburkholderia rhizoxinica HKI 454 plasmid pBRH01, complete sequence) position: , mismatch: 4, identity: 0.867

tggcgcaccagcgctgtggttggc-aagtgg	CRISPR spacer
tgacgcaccagcgcggtggttggctgagtg-	Protospacer
**.*********** ********* .**** 

2. spacer 2.1|2610308|28|NZ_CP017641|CRT matches to NC_014309 (Ralstonia solanacearum CFBP2957 plasmid RCFBPv3_mp, complete genome) position: , mismatch: 6, identity: 0.786

ggtgcaggtctgctgaaccatgcggcaa	CRISPR spacer
ggtgcaggtctactggaccatgcagacg	Protospacer
***********.***.*******.*  .

3. spacer 4.4|6492249|30|NZ_CP017641|PILER-CR,CRISPRCasFinder,CRT matches to MN693582 (Marine virus AFVG_25M154, complete genome) position: , mismatch: 6, identity: 0.8

---gtcaacgtcgtatcacccgtattcgtgatc	CRISPR spacer
tcggtcca---agtatcacccgtatgcgtgatc	Protospacer
   *** *    ************* *******

4. spacer 4.4|6492249|30|NZ_CP017641|PILER-CR,CRISPRCasFinder,CRT matches to MN693522 (Marine virus AFVG_25M153, complete genome) position: , mismatch: 6, identity: 0.8

---gtcaacgtcgtatcacccgtattcgtgatc	CRISPR spacer
tcggtcca---agtatcacccgtatgcgtgatc	Protospacer
   *** *    ************* *******

5. spacer 4.4|6492249|30|NZ_CP017641|PILER-CR,CRISPRCasFinder,CRT matches to MN693051 (Marine virus AFVG_25M152, complete genome) position: , mismatch: 6, identity: 0.8

---gtcaacgtcgtatcacccgtattcgtgatc	CRISPR spacer
tcggtcca---agtatcacccgtatgcgtgatc	Protospacer
   *** *    ************* *******

6. spacer 4.7|6492447|30|NZ_CP017641|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026419 (Acinetobacter sp. ACNIH2 plasmid pACI-6db8, complete sequence) position: , mismatch: 7, identity: 0.767

gagattggggaatgagcaacctgcttttga	CRISPR spacer
tgtattcctgaatgagcaagctgcttttga	Protospacer
 . ***   ********** **********

7. spacer 4.1|6492053|29|NZ_CP017641|PILER-CR,CRISPRCasFinder,CRT matches to MH622939 (Siphoviridae sp. isolate ctbf_3, complete genome) position: , mismatch: 8, identity: 0.724

atctccagagcatggcctacgcttacaaa	CRISPR spacer
gcctccagagcacggcctacgctcgcgtc	Protospacer
..**********.**********..*.  

8. spacer 4.9|6492579|30|NZ_CP017641|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026333 (Pseudomonas sp. XWY-1 plasmid pXWY, complete sequence) position: , mismatch: 8, identity: 0.733

tggtgtgacatcctgcttgagcacattttg	CRISPR spacer
tgctgtgaaatcctgcttgagcaggtgaat	Protospacer
** ***** ************** .*    

9. spacer 4.8|6492513|30|NZ_CP017641|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049158 (Caballeronia sp. SBC1 plasmid pSBC1_2, complete sequence) position: , mismatch: 9, identity: 0.7

gcgcttcaggtcattcacacgatgacggcg	CRISPR spacer
gtcgagcaggtcattcacaccatgacgcgc	Protospacer
*.    ************** ******   

10. spacer 4.8|6492513|30|NZ_CP017641|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049318 (Caballeronia sp. SBC2 plasmid pSBC2-2, complete sequence) position: , mismatch: 9, identity: 0.7

gcgcttcaggtcattcacacgatgacggcg	CRISPR spacer
gtcgagcaggtcattcacaccatgacgcgc	Protospacer
*.    ************** ******   

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 94152 : 166325 54 Bacillus_phage(14.29%) transposase,capsid,terminase NA
DBSCAN-SWA_2 177666 : 247867 56 Mycobacterium_phage(14.29%) transposase,tRNA NA
DBSCAN-SWA_3 674698 : 731774 53 Klosneuvirus(20.0%) transposase,protease,tRNA NA
DBSCAN-SWA_4 1065551 : 1107971 31 uncultured_Caudovirales_phage(40.0%) transposase,protease,integrase attL 1104419:1104478|attR 1107972:1108090
DBSCAN-SWA_5 1162700 : 1208283 34 Moraxella_phage(25.0%) transposase,tail NA
DBSCAN-SWA_6 1479141 : 1516782 24 Lactobacillus_phage(100.0%) transposase,integrase attL 1499176:1499189|attR 1518753:1518766
DBSCAN-SWA_7 1521856 : 1585422 54 Enterobacteria_phage(25.0%) transposase,integrase attL 1543661:1543720|attR 1581054:1581164
DBSCAN-SWA_8 1795485 : 1867981 58 Planktothrix_phage(40.0%) transposase,protease,integrase attL 1866185:1866199|attR 1871055:1871069
DBSCAN-SWA_9 2037754 : 2052369 12 Virus_Rctr41k(33.33%) transposase,integrase attL 2022741:2022800|attR 2044783:2046721
DBSCAN-SWA_10 2527553 : 2582173 35 Mollivirus(33.33%) transposase,protease,plate NA
DBSCAN-SWA_11 2999470 : 3080757 55 Planktothrix_phage(25.0%) protease,transposase,tRNA NA
DBSCAN-SWA_12 3379949 : 3534558 109 Kaumoebavirus(10.0%) transposase,integrase attL 3458382:3458396|attR 3534905:3534926
DBSCAN-SWA_13 3715470 : 3908046 111 uncultured_Mediterranean_phage(22.73%) transposase,tail,integrase attL 3803653:3803671|attR 3873684:3873702
DBSCAN-SWA_14 4001223 : 4097171 57 Bodo_saltans_virus(25.0%) transposase,integrase attL 4083056:4083071|attR 4101438:4101453
DBSCAN-SWA_15 4269689 : 4278065 7 uncultured_virus(50.0%) NA NA
DBSCAN-SWA_16 6347730 : 6502469 109 Mollivirus(15.38%) transposase,protease,tRNA NA
DBSCAN-SWA_17 7079731 : 7169460 58 Pseudomonas_phage(12.5%) transposase,tRNA NA
DBSCAN-SWA_18 7998337 : 8028856 28 uncultured_Mediterranean_phage(20.0%) transposase,integrase attL 7989295:7989309|attR 8010996:8011010
DBSCAN-SWA_19 8279630 : 8338736 38 environmental_Halophage(12.5%) transposase,integrase attL 8279352:8279403|attR 8338761:8338812
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage