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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP011167 Bordetella pertussis strain C571 chromosome, complete genome 5 crisprs csa3,cas3,DinG,DEDDh 0 0 31 0

Results visualization

1. NZ_CP011167
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011167_1 251640-251724 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011167_2 434132-434225 Orphan NA
1 spacers
DEDDh

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011167_3 998449-998543 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011167_4 1894892-1895019 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011167_5 3430410-3430519 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 27282 : 70036 41 Synechococcus_phage(50.0%) tRNA,transposase NA
DBSCAN-SWA_2 77634 : 136108 54 Planktothrix_phage(22.22%) tRNA,transposase NA
DBSCAN-SWA_3 164893 : 219510 47 Diachasmimorpha_longicaudata_entomopoxvirus(14.29%) tRNA,protease,transposase NA
DBSCAN-SWA_4 225502 : 289022 55 Bacillus_phage(25.0%) tRNA,protease,transposase NA
DBSCAN-SWA_5 392955 : 450464 50 Orpheovirus(14.29%) transposase NA
DBSCAN-SWA_6 592518 : 653708 55 uncultured_Mediterranean_phage(40.0%) protease,transposase NA
DBSCAN-SWA_7 659032 : 705223 50 uncultured_Caudovirales_phage(18.18%) tRNA,tail,terminase,transposase NA
DBSCAN-SWA_8 711389 : 765319 46 Planktothrix_phage(50.0%) tRNA,transposase NA
DBSCAN-SWA_9 816912 : 888925 60 Acinetobacter_phage(20.0%) holin,transposase NA
DBSCAN-SWA_10 896559 : 959640 54 Bacillus_phage(25.0%) holin,transposase NA
DBSCAN-SWA_11 979062 : 1041218 45 Streptococcus_phage(20.0%) transposase NA
DBSCAN-SWA_12 1049428 : 1099041 42 uncultured_Mediterranean_phage(50.0%) tRNA,holin,transposase NA
DBSCAN-SWA_13 1110766 : 1184090 52 Catovirus(22.22%) tRNA,transposase,protease NA
DBSCAN-SWA_14 1320049 : 1388536 58 Planktothrix_phage(33.33%) transposase NA
DBSCAN-SWA_15 1449027 : 1504515 56 Mollivirus(16.67%) protease,transposase NA
DBSCAN-SWA_16 1797101 : 1845116 42 Moraxella_phage(18.18%) tRNA,transposase NA
DBSCAN-SWA_17 1906678 : 1965948 51 Klosneuvirus(40.0%) tRNA,protease,transposase NA
DBSCAN-SWA_18 1976188 : 2033685 56 Staphylococcus_phage(16.67%) transposase NA
DBSCAN-SWA_19 2049235 : 2113604 51 Vibrio_phage(20.0%) transposase NA
DBSCAN-SWA_20 2300072 : 2361420 52 Yellowstone_lake_phycodnavirus(12.5%) tRNA,transposase NA
DBSCAN-SWA_21 2382211 : 2453365 55 Tetraselmis_virus(10.0%) transposase NA
DBSCAN-SWA_22 2537565 : 2588737 48 Salmonella_phage(20.0%) tRNA,transposase NA
DBSCAN-SWA_23 2687032 : 2727701 42 Salmonella_phage(33.33%) tRNA,transposase NA
DBSCAN-SWA_24 2783166 : 2856036 58 Moraxella_phage(16.67%) tRNA,transposase NA
DBSCAN-SWA_25 2859179 : 2925990 49 uncultured_Mediterranean_phage(28.57%) protease,transposase NA
DBSCAN-SWA_26 2956375 : 3000066 39 Planktothrix_phage(33.33%) transposase NA
DBSCAN-SWA_27 3380012 : 3433753 48 Staphylococcus_phage(33.33%) transposase NA
DBSCAN-SWA_28 3439908 : 3499208 48 Acinetobacter_phage(27.27%) tRNA,transposase NA
DBSCAN-SWA_29 3514146 : 3573268 48 Planktothrix_phage(12.5%) tRNA,transposase NA
DBSCAN-SWA_30 3705393 : 3838319 114 uncultured_Mediterranean_phage(10.34%) tRNA,integrase,transposase attL 3750036:3750053|attR 3794676:3794693
DBSCAN-SWA_31 4027535 : 4080967 45 Planktothrix_phage(40.0%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage