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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP011186 Bordetella pertussis strain H665 chromosome, complete genome 5 crisprs csa3,cas3,DinG,DEDDh 0 0 30 0

Results visualization

1. NZ_CP011186
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011186_1 250590-250674 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011186_2 432032-432125 Orphan NA
1 spacers
DEDDh

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011186_3 995301-995395 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011186_4 1820855-1820982 Orphan NA
1 spacers
csa3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011186_5 3434577-3434686 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 27282 : 70036 42 Synechococcus_phage(50.0%) transposase,tRNA NA
DBSCAN-SWA_2 77634 : 136108 53 Planktothrix_phage(22.22%) transposase,tRNA NA
DBSCAN-SWA_3 164892 : 225403 51 Diachasmimorpha_longicaudata_entomopoxvirus(11.11%) transposase,tRNA,protease NA
DBSCAN-SWA_4 233335 : 286923 47 Bacillus_phage(25.0%) transposase,tRNA,protease NA
DBSCAN-SWA_5 390856 : 449413 50 Orpheovirus(14.29%) transposase NA
DBSCAN-SWA_6 589369 : 650560 56 uncultured_Mediterranean_phage(40.0%) transposase,protease NA
DBSCAN-SWA_7 655884 : 702075 51 uncultured_Caudovirales_phage(18.18%) transposase,tRNA,terminase,tail NA
DBSCAN-SWA_8 708241 : 762171 46 Planktothrix_phage(50.0%) transposase,tRNA NA
DBSCAN-SWA_9 884760 : 952736 56 Bacillus_phage(33.33%) transposase NA
DBSCAN-SWA_10 996265 : 1068782 60 Enterococcus_phage(14.29%) transposase,tRNA NA
DBSCAN-SWA_11 1072535 : 1134611 53 Catovirus(20.0%) holin,transposase,tRNA NA
DBSCAN-SWA_12 1152181 : 1218700 54 Erysipelothrix_phage(33.33%) transposase,tRNA NA
DBSCAN-SWA_13 1269628 : 1326839 49 Klosneuvirus(16.67%) transposase NA
DBSCAN-SWA_14 1417072 : 1469225 45 Salmonella_phage(25.0%) transposase,tRNA NA
DBSCAN-SWA_15 1513150 : 1644314 104 Lactobacillus_phage(11.11%) transposase,tRNA NA
DBSCAN-SWA_16 1665105 : 1726453 52 uncultured_Caudovirales_phage(12.5%) transposase,tRNA NA
DBSCAN-SWA_17 1832641 : 1891911 51 Klosneuvirus(40.0%) transposase,tRNA,protease NA
DBSCAN-SWA_18 1902151 : 1946474 45 Staphylococcus_phage(25.0%) transposase NA
DBSCAN-SWA_19 1976247 : 2040616 51 Vibrio_phage(20.0%) transposase NA
DBSCAN-SWA_20 2172145 : 2221798 43 Synechococcus_phage(15.38%) transposase,tRNA NA
DBSCAN-SWA_21 2478105 : 2536349 54 Planktothrix_phage(28.57%) transposase,tRNA NA
DBSCAN-SWA_22 2578627 : 2645127 56 uncultured_Caudovirales_phage(40.0%) transposase NA
DBSCAN-SWA_23 2673242 : 2711703 40 Planktothrix_phage(33.33%) transposase NA
DBSCAN-SWA_24 2810830 : 2865347 48 Diachasmimorpha_longicaudata_entomopoxvirus(20.0%) transposase NA
DBSCAN-SWA_25 2873372 : 2930158 41 uncultured_Mediterranean_phage(28.57%) transposase,protease NA
DBSCAN-SWA_26 2960544 : 3004235 41 Planktothrix_phage(33.33%) transposase NA
DBSCAN-SWA_27 3384179 : 3437920 48 Staphylococcus_phage(33.33%) transposase NA
DBSCAN-SWA_28 3444075 : 3503373 47 Acinetobacter_phage(27.27%) transposase,tRNA NA
DBSCAN-SWA_29 3518311 : 3576384 47 Planktothrix_phage(12.5%) transposase,tRNA NA
DBSCAN-SWA_30 4008596 : 4073508 60 Planktothrix_phage(40.0%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage