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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP011196 Bordetella pertussis strain H810 chromosome, complete genome 5 crisprs csa3,cas3,DinG,DEDDh 0 0 31 0

Results visualization

1. NZ_CP011196
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011196_1 250590-250674 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011196_2 432033-432126 Orphan NA
1 spacers
DEDDh

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011196_3 995301-995395 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011196_4 1818756-1818883 Orphan NA
1 spacers
csa3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011196_5 3432482-3432591 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 27282 : 70036 41 Synechococcus_phage(50.0%) tRNA,transposase NA
DBSCAN-SWA_2 77634 : 136108 54 Planktothrix_phage(22.22%) tRNA,transposase NA
DBSCAN-SWA_3 164892 : 225403 51 Diachasmimorpha_longicaudata_entomopoxvirus(11.11%) tRNA,transposase,protease NA
DBSCAN-SWA_4 233335 : 286923 48 Bacillus_phage(25.0%) tRNA,transposase,protease NA
DBSCAN-SWA_5 390856 : 448365 50 Orpheovirus(14.29%) transposase NA
DBSCAN-SWA_6 589370 : 650560 56 uncultured_Mediterranean_phage(40.0%) transposase,protease NA
DBSCAN-SWA_7 655884 : 702075 51 uncultured_Caudovirales_phage(18.18%) tRNA,transposase,terminase,tail NA
DBSCAN-SWA_8 708241 : 762171 46 Planktothrix_phage(50.0%) tRNA,transposase NA
DBSCAN-SWA_9 853049 : 902313 40 Vibrio_phage(33.33%) holin,transposase NA
DBSCAN-SWA_10 911925 : 976865 58 Bacillus_phage(18.18%) transposase NA
DBSCAN-SWA_11 996265 : 1059416 54 Enterococcus_phage(16.67%) transposase NA
DBSCAN-SWA_12 1065400 : 1125463 50 uncultured_Mediterranean_phage(37.5%) tRNA,holin,transposase,protease NA
DBSCAN-SWA_13 1156529 : 1218700 50 Erysipelothrix_phage(33.33%) tRNA,transposase NA
DBSCAN-SWA_14 1269627 : 1326838 49 Klosneuvirus(16.67%) transposase NA
DBSCAN-SWA_15 1417071 : 1469224 46 Salmonella_phage(25.0%) tRNA,transposase NA
DBSCAN-SWA_16 1513149 : 1581235 59 Streptococcus_virus(11.11%) tRNA,transposase NA
DBSCAN-SWA_17 1617184 : 1672775 47 Brazilian_cedratvirus(25.0%) transposase NA
DBSCAN-SWA_18 1830542 : 1889812 51 Klosneuvirus(40.0%) tRNA,transposase,protease NA
DBSCAN-SWA_19 1900052 : 1944375 45 Staphylococcus_phage(25.0%) transposase NA
DBSCAN-SWA_20 1974154 : 2038523 51 Vibrio_phage(20.0%) transposase NA
DBSCAN-SWA_21 2170052 : 2219705 43 Synechococcus_phage(15.38%) tRNA,transposase NA
DBSCAN-SWA_22 2227429 : 2287440 60 uncultured_Caudovirales_phage(33.33%) transposase,protease NA
DBSCAN-SWA_23 2477059 : 2535303 54 Planktothrix_phage(28.57%) tRNA,transposase NA
DBSCAN-SWA_24 2577580 : 2644080 56 uncultured_Caudovirales_phage(40.0%) transposase NA
DBSCAN-SWA_25 2672195 : 2709607 39 Planktothrix_phage(33.33%) transposase NA
DBSCAN-SWA_26 2808734 : 2863251 48 Diachasmimorpha_longicaudata_entomopoxvirus(20.0%) transposase NA
DBSCAN-SWA_27 2871276 : 2928062 41 uncultured_Mediterranean_phage(28.57%) transposase,protease NA
DBSCAN-SWA_28 2958448 : 3002139 41 Planktothrix_phage(33.33%) transposase NA
DBSCAN-SWA_29 3382084 : 3435825 48 Staphylococcus_phage(33.33%) transposase NA
DBSCAN-SWA_30 3441980 : 3501278 48 Acinetobacter_phage(27.27%) tRNA,transposase NA
DBSCAN-SWA_31 3516216 : 3574289 47 Planktothrix_phage(12.5%) tRNA,transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage