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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP012079 Bordetella pertussis strain H852 chromosome, complete genome 5 crisprs csa3,cas3,DinG,DEDDh 0 0 28 0

Results visualization

1. NZ_CP012079
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP012079_1 250591-250675 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP012079_2 432034-432127 Orphan NA
1 spacers
DEDDh

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP012079_3 997400-997494 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP012079_4 2173648-2173775 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP012079_5 3430388-3430497 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 27282 : 70036 41 Synechococcus_phage(50.0%) tRNA,transposase NA
DBSCAN-SWA_2 77634 : 136108 54 Planktothrix_phage(22.22%) tRNA,transposase NA
DBSCAN-SWA_3 164893 : 225404 51 Diachasmimorpha_longicaudata_entomopoxvirus(11.11%) tRNA,transposase,protease NA
DBSCAN-SWA_4 233336 : 286924 48 Bacillus_phage(25.0%) tRNA,transposase,protease NA
DBSCAN-SWA_5 390857 : 448366 50 Orpheovirus(14.29%) transposase NA
DBSCAN-SWA_6 591469 : 652660 56 uncultured_Mediterranean_phage(40.0%) protease,transposase NA
DBSCAN-SWA_7 657984 : 704175 51 uncultured_Caudovirales_phage(18.18%) terminase,transposase,tRNA,tail NA
DBSCAN-SWA_8 710341 : 764271 46 Planktothrix_phage(50.0%) transposase,tRNA NA
DBSCAN-SWA_9 855149 : 914975 48 Vibrio_phage(25.0%) transposase,holin NA
DBSCAN-SWA_10 935722 : 999315 57 Bacillus_virus(15.38%) transposase NA
DBSCAN-SWA_11 1037984 : 1086922 46 uncultured_Mediterranean_phage(37.5%) tRNA,transposase,holin NA
DBSCAN-SWA_12 1095990 : 1159578 51 Planktothrix_phage(18.18%) protease,transposase,tRNA NA
DBSCAN-SWA_13 1317949 : 1386436 58 Planktothrix_phage(33.33%) transposase NA
DBSCAN-SWA_14 1446927 : 1502415 56 Mollivirus(16.67%) protease,transposase NA
DBSCAN-SWA_15 1597112 : 1665197 59 Streptococcus_virus(11.11%) transposase,tRNA NA
DBSCAN-SWA_16 1701146 : 1756737 47 Brazilian_cedratvirus(25.0%) transposase NA
DBSCAN-SWA_17 2076906 : 2134185 49 Klosneuvirus(14.29%) tRNA,transposase NA
DBSCAN-SWA_18 2185434 : 2244704 51 Klosneuvirus(40.0%) tRNA,transposase,protease NA
DBSCAN-SWA_19 2254944 : 2299267 45 Staphylococcus_phage(25.0%) transposase NA
DBSCAN-SWA_20 2329040 : 2393409 51 Vibrio_phage(20.0%) transposase NA
DBSCAN-SWA_21 2685964 : 2726633 42 Salmonella_phage(33.33%) tRNA,transposase NA
DBSCAN-SWA_22 2730744 : 2812879 60 Bacillus_virus(28.57%) tRNA,transposase NA
DBSCAN-SWA_23 2836804 : 2884513 40 Pelagibacter_phage(25.0%) transposase NA
DBSCAN-SWA_24 2892510 : 2956258 56 uncultured_Mediterranean_phage(22.22%) protease,transposase NA
DBSCAN-SWA_25 2965017 : 3009538 43 Bacillus_virus(20.0%) transposase NA
DBSCAN-SWA_26 3379990 : 3433731 48 Staphylococcus_phage(33.33%) transposase NA
DBSCAN-SWA_27 3439886 : 3499186 48 Acinetobacter_phage(27.27%) transposase,tRNA NA
DBSCAN-SWA_28 3514124 : 3572197 47 Planktothrix_phage(12.5%) tRNA,transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage