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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP012085 Bordetella pertussis strain J010 chromosome, complete genome 5 crisprs csa3,cas3,DinG,DEDDh 0 0 31 0

Results visualization

1. NZ_CP012085
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP012085_1 250591-250675 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP012085_2 432034-432127 Orphan NA
1 spacers
DEDDh

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP012085_3 995299-995393 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP012085_4 1819752-1819879 Orphan NA
1 spacers
csa3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP012085_5 3434529-3434638 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 27282 : 70036 41 Synechococcus_phage(50.0%) tRNA,transposase NA
DBSCAN-SWA_2 77634 : 136108 54 Planktothrix_phage(22.22%) tRNA,transposase NA
DBSCAN-SWA_3 164893 : 225404 51 Diachasmimorpha_longicaudata_entomopoxvirus(11.11%) protease,tRNA,transposase NA
DBSCAN-SWA_4 233336 : 286924 48 Bacillus_phage(25.0%) protease,tRNA,transposase NA
DBSCAN-SWA_5 390857 : 448366 50 Orpheovirus(14.29%) transposase NA
DBSCAN-SWA_6 589371 : 650561 56 uncultured_Mediterranean_phage(40.0%) protease,transposase NA
DBSCAN-SWA_7 655885 : 702076 51 uncultured_Caudovirales_phage(18.18%) transposase,terminase,tail,tRNA NA
DBSCAN-SWA_8 708242 : 762169 46 Planktothrix_phage(50.0%) transposase,tRNA NA
DBSCAN-SWA_9 853047 : 902311 40 Vibrio_phage(33.33%) holin,transposase NA
DBSCAN-SWA_10 911923 : 976863 58 Bacillus_phage(18.18%) transposase NA
DBSCAN-SWA_11 996263 : 1059414 54 Enterococcus_phage(16.67%) transposase NA
DBSCAN-SWA_12 1065398 : 1125461 50 uncultured_Mediterranean_phage(37.5%) transposase,protease,holin,tRNA NA
DBSCAN-SWA_13 1156527 : 1218698 50 Erysipelothrix_phage(33.33%) tRNA,transposase NA
DBSCAN-SWA_14 1269626 : 1324829 47 Klosneuvirus(16.67%) transposase NA
DBSCAN-SWA_15 1418071 : 1472295 46 Salmonella_phage(22.22%) tRNA,transposase NA
DBSCAN-SWA_16 1514144 : 1582231 59 Streptococcus_virus(11.11%) transposase,tRNA NA
DBSCAN-SWA_17 1618180 : 1673771 47 Brazilian_cedratvirus(25.0%) transposase NA
DBSCAN-SWA_18 1831538 : 1890808 51 Klosneuvirus(40.0%) protease,tRNA,transposase NA
DBSCAN-SWA_19 1901048 : 1945371 45 Staphylococcus_phage(25.0%) transposase NA
DBSCAN-SWA_20 1975150 : 2039519 51 Vibrio_phage(20.0%) transposase NA
DBSCAN-SWA_21 2171048 : 2220701 43 Synechococcus_phage(15.38%) tRNA,transposase NA
DBSCAN-SWA_22 2228425 : 2288436 60 uncultured_Caudovirales_phage(33.33%) protease,transposase NA
DBSCAN-SWA_23 2478055 : 2536299 54 Planktothrix_phage(28.57%) tRNA,transposase NA
DBSCAN-SWA_24 2578577 : 2645077 56 uncultured_Caudovirales_phage(40.0%) transposase NA
DBSCAN-SWA_25 2673192 : 2710604 39 Planktothrix_phage(33.33%) transposase NA
DBSCAN-SWA_26 2809731 : 2864248 48 Diachasmimorpha_longicaudata_entomopoxvirus(20.0%) transposase NA
DBSCAN-SWA_27 2872273 : 2929059 41 uncultured_Mediterranean_phage(28.57%) protease,transposase NA
DBSCAN-SWA_28 2959445 : 3004185 42 Planktothrix_phage(33.33%) transposase NA
DBSCAN-SWA_29 3384131 : 3437872 48 Staphylococcus_phage(33.33%) transposase NA
DBSCAN-SWA_30 3444027 : 3503325 48 Acinetobacter_phage(27.27%) transposase,tRNA NA
DBSCAN-SWA_31 3518263 : 3576336 47 Planktothrix_phage(12.5%) tRNA,transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage