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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP012086 Bordetella pertussis strain J013 chromosome, complete genome 5 crisprs csa3,cas3,DinG,DEDDh 0 0 29 0

Results visualization

1. NZ_CP012086
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP012086_1 250592-250676 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP012086_2 432035-432128 Orphan NA
1 spacers
DEDDh

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP012086_3 995303-995397 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP012086_4 1818758-1818885 Orphan NA
1 spacers
csa3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP012086_5 3430382-3430491 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 27282 : 70036 42 Synechococcus_phage(50.0%) transposase,tRNA NA
DBSCAN-SWA_2 77634 : 136108 53 Planktothrix_phage(22.22%) transposase,tRNA NA
DBSCAN-SWA_3 164894 : 225405 51 Diachasmimorpha_longicaudata_entomopoxvirus(11.11%) transposase,tRNA,protease NA
DBSCAN-SWA_4 233337 : 286925 47 Bacillus_phage(25.0%) transposase,tRNA,protease NA
DBSCAN-SWA_5 390858 : 448367 50 Orpheovirus(14.29%) transposase NA
DBSCAN-SWA_6 589372 : 650562 56 uncultured_Mediterranean_phage(40.0%) transposase,protease NA
DBSCAN-SWA_7 655886 : 702077 51 uncultured_Caudovirales_phage(18.18%) transposase,tRNA,terminase,tail NA
DBSCAN-SWA_8 708243 : 762173 46 Planktothrix_phage(50.0%) transposase,tRNA NA
DBSCAN-SWA_9 884762 : 952738 56 Bacillus_phage(33.33%) transposase NA
DBSCAN-SWA_10 996267 : 1068784 60 Enterococcus_phage(14.29%) transposase,tRNA NA
DBSCAN-SWA_11 1072537 : 1134613 53 Catovirus(20.0%) transposase,tRNA,holin NA
DBSCAN-SWA_12 1152183 : 1218702 54 Erysipelothrix_phage(33.33%) transposase,tRNA NA
DBSCAN-SWA_13 1269629 : 1326840 49 Klosneuvirus(16.67%) transposase NA
DBSCAN-SWA_14 1417073 : 1469226 45 Salmonella_phage(25.0%) transposase,tRNA NA
DBSCAN-SWA_15 1513151 : 1581237 57 Streptococcus_virus(11.11%) transposase,tRNA NA
DBSCAN-SWA_16 1617186 : 1672777 47 Brazilian_cedratvirus(25.0%) transposase NA
DBSCAN-SWA_17 1830544 : 1889814 51 Klosneuvirus(40.0%) transposase,tRNA,protease NA
DBSCAN-SWA_18 1900054 : 1944377 45 Staphylococcus_phage(25.0%) transposase NA
DBSCAN-SWA_19 1974150 : 2038519 51 Vibrio_phage(20.0%) transposase NA
DBSCAN-SWA_20 2170048 : 2219701 43 Synechococcus_phage(15.38%) transposase,tRNA NA
DBSCAN-SWA_21 2476008 : 2534252 54 Planktothrix_phage(28.57%) transposase,tRNA NA
DBSCAN-SWA_22 2576530 : 2643030 56 uncultured_Caudovirales_phage(40.0%) transposase NA
DBSCAN-SWA_23 2806635 : 2861152 48 Diachasmimorpha_longicaudata_entomopoxvirus(20.0%) transposase NA
DBSCAN-SWA_24 2869177 : 2925963 41 uncultured_Mediterranean_phage(28.57%) transposase,protease NA
DBSCAN-SWA_25 2956349 : 3000040 41 Planktothrix_phage(33.33%) transposase NA
DBSCAN-SWA_26 3379984 : 3433725 48 Staphylococcus_phage(33.33%) transposase NA
DBSCAN-SWA_27 3439880 : 3499178 47 Acinetobacter_phage(27.27%) transposase,tRNA NA
DBSCAN-SWA_28 3514116 : 3572189 47 Planktothrix_phage(12.5%) transposase,tRNA NA
DBSCAN-SWA_29 4004401 : 4069313 60 Planktothrix_phage(40.0%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage