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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP012088 Bordetella pertussis strain J107 chromosome, complete genome 5 crisprs csa3,cas3,DinG,DEDDh 0 0 33 0

Results visualization

1. NZ_CP012088
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP012088_1 250589-250673 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP012088_2 432032-432125 Orphan NA
1 spacers
DEDDh

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP012088_3 996348-996442 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP012088_4 1819803-1819930 Orphan NA
1 spacers
csa3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP012088_5 3431427-3431536 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 27282 : 70036 41 Synechococcus_phage(50.0%) transposase,tRNA NA
DBSCAN-SWA_2 77634 : 136108 54 Planktothrix_phage(22.22%) transposase,tRNA NA
DBSCAN-SWA_3 164891 : 225402 51 Diachasmimorpha_longicaudata_entomopoxvirus(11.11%) transposase,protease,tRNA NA
DBSCAN-SWA_4 233334 : 286922 48 Bacillus_phage(25.0%) transposase,protease,tRNA NA
DBSCAN-SWA_5 390855 : 448364 50 Orpheovirus(14.29%) transposase NA
DBSCAN-SWA_6 589369 : 650559 56 uncultured_Mediterranean_phage(40.0%) transposase,protease NA
DBSCAN-SWA_7 655883 : 702074 51 uncultured_Caudovirales_phage(18.18%) transposase,tail,tRNA,terminase NA
DBSCAN-SWA_8 708240 : 762170 46 Planktothrix_phage(50.0%) transposase,tRNA NA
DBSCAN-SWA_9 853048 : 957539 87 Bacillus_phage(20.0%) transposase,holin NA
DBSCAN-SWA_10 976961 : 1047228 57 Streptococcus_phage(14.29%) transposase NA
DBSCAN-SWA_11 1059446 : 1117877 48 uncultured_Mediterranean_phage(37.5%) transposase,protease,tRNA,holin NA
DBSCAN-SWA_12 1157576 : 1219747 50 Erysipelothrix_phage(33.33%) transposase,tRNA NA
DBSCAN-SWA_13 1270675 : 1327886 49 Klosneuvirus(16.67%) transposase NA
DBSCAN-SWA_14 1418119 : 1470272 46 Salmonella_phage(25.0%) transposase,tRNA NA
DBSCAN-SWA_15 1514197 : 1582282 59 Streptococcus_virus(11.11%) transposase,tRNA NA
DBSCAN-SWA_16 1618231 : 1673822 47 Brazilian_cedratvirus(25.0%) transposase NA
DBSCAN-SWA_17 1831589 : 1890859 51 Klosneuvirus(40.0%) transposase,protease,tRNA NA
DBSCAN-SWA_18 1901099 : 1945422 45 Staphylococcus_phage(25.0%) transposase NA
DBSCAN-SWA_19 1975195 : 2039564 51 Vibrio_phage(20.0%) transposase NA
DBSCAN-SWA_20 2171093 : 2228372 49 Synechococcus_phage(14.29%) transposase,tRNA NA
DBSCAN-SWA_21 2474954 : 2533198 54 Planktothrix_phage(28.57%) transposase,tRNA NA
DBSCAN-SWA_22 2575475 : 2641975 56 uncultured_Caudovirales_phage(40.0%) transposase NA
DBSCAN-SWA_23 2670090 : 2707502 39 Planktothrix_phage(33.33%) transposase NA
DBSCAN-SWA_24 2806629 : 2861146 48 Diachasmimorpha_longicaudata_entomopoxvirus(20.0%) transposase NA
DBSCAN-SWA_25 2869171 : 2925957 41 uncultured_Mediterranean_phage(28.57%) transposase,protease NA
DBSCAN-SWA_26 2956343 : 3000034 41 Planktothrix_phage(33.33%) transposase NA
DBSCAN-SWA_27 3122617 : 3186452 57 Pseudomonas_phage(30.0%) transposase,protease,tRNA NA
DBSCAN-SWA_28 3234596 : 3248784 15 Erwinia_phage(100.0%) transposase,protease NA
DBSCAN-SWA_29 3267207 : 3331498 49 Tupanvirus(12.5%) transposase,tRNA,holin,integrase,protease attL 3260601:3260619|attR 3333359:3333377
DBSCAN-SWA_30 3381029 : 3434770 48 Staphylococcus_phage(33.33%) transposase NA
DBSCAN-SWA_31 3440925 : 3500223 48 Acinetobacter_phage(27.27%) transposase,tRNA NA
DBSCAN-SWA_32 3515161 : 3573234 47 Planktothrix_phage(12.5%) transposase,tRNA NA
DBSCAN-SWA_33 4028548 : 4081980 46 Planktothrix_phage(40.0%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage