CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP011236	Bordetella pertussis strain H710 chromosome, complete genome	5 crisprs	DEDDh,cas3,csa3,DinG	0	0	27	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP011236_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011236_1

251640-251724

Orphan

Consensus_repeat	Method
GGTGCCTGTCCCCGCGGGGACAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP011236_1

>merge|NZ_CP011236|1|251640-251724|CRISPRCasFinder
GGTGCCTGTCCCCGCGGGGACAGATACCGTCTTGGCCGTCAAGCGTTCATGGCGTATGACAGGGTGCCTGTCCCCGCGGGGACAG

>NZ_CP011236|1|1|251640-251724|CRISPRCasFinder
GGTGCCTGTCCCCGCGGGGACAG	ATACCGTCTTGGCCGTCAAGCGTTCATGGCGTATGACAG
GGTGCCTGTCCCCGCGGGGACAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011236.1\|WP_003814324.1\|259957_260941_+\|tripartite-tricarboxylate-transporter-substrate-binding-protein-BugE	unknown	unknown	gnl\|CDD\|270295
NZ_CP011236.1\|WP_003814358.1\|240597_241341_-\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224715
NZ_CP011236.1\|WP_003814351.1\|246111_247068_+\|tripartite-tricarboxylate-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270296
NZ_CP011236.1\|WP_010929705.1\|252672_254562_-\|DNA-mismatch-repair-endonuclease-MutL	unknown	unknown	gnl\|CDD\|234630
NZ_CP011236.1\|WP_010929709.1\|261005_261905_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176107
NZ_CP011236.1\|WP_003814337.1\|251734_252676_-\|tRNA-(adenosine(37)-N6)-dimethylallyltransferase-MiaA	unknown	unknown	gnl\|CDD\|234626
NZ_CP011236.1\|WP_010929704.1\|249625_250327_-\|DnaA-regulatory-inactivator-Hda	unknown	unknown	gnl\|CDD\|236347
NZ_CP011236.1\|WP_003814321.1\|262011_263766_+\|gamma-glutamyltransferase	unknown	unknown	gnl\|CDD\|223482
NZ_CP011236.1\|WP_010929703.1\|248930_249629_-\|HAD-IB-family-hydrolase	unknown	unknown	gnl\|CDD\|319796
NZ_CP011236.1\|WP_010929702.1\|247574_248930_-\|polynucleotide-adenylyltransferase-PcnB	unknown	unknown	gnl\|CDD\|130997
NZ_CP011236.1\|WP_010929708.1\|258841_259822_-\|AEC-family-transporter	unknown	unknown	gnl\|CDD\|223751
NZ_CP011236.1\|WP_003814356.1\|241384_242428_-\|TRAP-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270320
NZ_CP011236.1\|WP_010929701.1\|247086_247578_-\|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase	unknown	unknown	gnl\|CDD\|172582
NZ_CP011236.1\|WP_010929706.1\|256745_257282_-\|bifunctional-alanine-racemase/tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-ATPase-subunit-type-1-TsaE	unknown	unknown	gnl\|CDD\|223873
NZ_CP011236.1\|WP_010929707.1\|257433_258825_+\|class-II-fumarate-hydratase	unknown	unknown	gnl\|CDD\|234779
NZ_CP011236.1\|WP_003814339.1\|250579_251629_+\|phosphoribosylformylglycinamidine-cyclo-ligase	unknown	unknown	gnl\|CDD\|235439
NZ_CP011236.1\|WP_003814355.1\|242598_244701_+\|TRAP-transporter-large-permease-subunit	unknown	unknown	gnl\|CDD\|129868
NZ_CP011236.1\|WP_019247543.1\|255429_256815_-\|N-acetylmuramoyl-L-alanine-amidase	unknown	unknown	gnl\|CDD\|182376
NZ_CP011236.1\|WP_003814332.1\|254648_255287_+\|membrane-protein	unknown	unknown	gnl\|CDD\|182775
NZ_CP011236.1\|WP_003814363.1\|239165_239576_+\|4-carboxymuconolactone-decarboxylase	unknown	unknown	gnl\|CDD\|131478

Protein	Function_ID	Function_description	E-value
NZ_CP011236.1\|WP_003814324.1\|259957_260941_+\|tripartite-tricarboxylate-transporter-substrate-binding-protein-BugE	gnl\|CDD\|270295	cd13577, PBP2_BugE_Glu, Glutamate transporter of Bug (Bordetella uptake gene) protein family; contains the type 2 periplasmic binding fold. The Bug (Bordetella uptake gene) protein family is a large family of periplasmic solute-binding (PBP) receptors present in a number of bacterial species, but mainly in proteobacteria. Bug proteins are the PBP components of the tripartite carboxylate transporters (TTT). Their expansive expansion in proteobacteria indicates a large functional diversity. The best studied examples are Bordetella pertussis BugD, which is an aspartic acid transporter, and BugE, which is glutamate transporter.	4.35876e-158
NZ_CP011236.1\|WP_003814358.1\|240597_241341_-\|GntR-family-transcriptional-regulator	gnl\|CDD\|224715	COG1802, GntR, Transcriptional regulators [Transcription].	5.58304e-45
NZ_CP011236.1\|WP_003814351.1\|246111_247068_+\|tripartite-tricarboxylate-transporter-substrate-binding-protein	gnl\|CDD\|270296	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family; contains the type 2 periplasmic binding fold. Bug27 binds non-carboxylated solute nicotinamide, in contrast to BugD (aspartic acid transporter) and BugE (glutamate transporter) which both bind aliphatic carboxylated ligands. The Bug (Bordetella uptake gene) protein family is a large family of periplasmic solute-binding (PBP) receptors present in a number of bacterial species, but mainly in proteobacteria. Bug proteins are the PBP components of the tripartite carboxylate transporters (TTT). Their expansive expansion in proteobacteria indicates a large functional diversity.	6.01101e-118
NZ_CP011236.1\|WP_010929705.1\|252672_254562_-\|DNA-mismatch-repair-endonuclease-MutL	gnl\|CDD\|234630	PRK00095, mutL, DNA mismatch repair endonuclease MutL.	0
NZ_CP011236.1\|WP_010929709.1\|261005_261905_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176107	cd08415, PBP2_LysR_opines_like, The C-terminal substrate-domain of LysR-type transcriptional regulators involved in the catabolism of opines and that of related regulators, contains the type 2 periplasmic binding fold. This CD includes the C-terminal substrate-domain of LysR-type transcriptional regulators, OccR and NocR, involved in the catabolism of opines and that of LysR for lysine biosynthesis which clustered together in phylogenetic trees. Opines, such as octopine and nopaline, are low molecular weight compounds found in plant crown gall tumors that are produced by the parasitic bacterium Agrobacterium. There are at least 30 different opines identified so far. Opines are utilized by tumor-colonizing bacteria as a source of carbon, nitrogen, and energy. NocR and OccR belong to the family of LysR-type transcriptional regulators that positively regulates the catabolism of nopaline and octopine, respectively. Both nopaline and octopalin are arginine derivatives. In Agrobacterium tumefaciens, NocR regulates expression of the divergently transcribed nocB and nocR genes of the nopaline catabolism (noc) region. OccR protein activates the occQ operon of the Ti plasmid in response to octopine. This operon encodes proteins required for the uptake and catabolism of octopine. The occ operon also encodes the TraR protein, which is a quorum-sensing transcriptional regulator of the Ti plasmid tra regulon. LysR is the transcriptional activator of lysA gene encoding diaminopimelate decarboxylase, an enzyme that catalyses the decarboxylation of diaminopimelate to produce lysine. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	2.62875e-38
NZ_CP011236.1\|WP_003814337.1\|251734_252676_-\|tRNA-(adenosine(37)-N6)-dimethylallyltransferase-MiaA	gnl\|CDD\|234626	PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed.	4.17279e-156
NZ_CP011236.1\|WP_010929704.1\|249625_250327_-\|DnaA-regulatory-inactivator-Hda	gnl\|CDD\|236347	PRK08903, PRK08903, DnaA regulatory inactivator Hda; Validated.	2.81236e-100
NZ_CP011236.1\|WP_003814321.1\|262011_263766_+\|gamma-glutamyltransferase	gnl\|CDD\|223482	COG0405, Ggt, Gamma-glutamyltransferase [Amino acid transport and metabolism].	0
NZ_CP011236.1\|WP_010929703.1\|248930_249629_-\|HAD-IB-family-hydrolase	gnl\|CDD\|319796	cd02612, HAD_PGPPase, phosphatidylglycerol-phosphate phosphatase, similar to Escherichia coli K-12 phosphatidylglycerol-phosphate phosphatase C. This family includes Escherichia coli K-12 phosphatidylglycerol-phosphate phosphatase C, PgpC (previously named yfhB) which catalyzes the dephosphorylation of phosphatidylglycerol-phosphate (PGP) to phosphatidylglycerol (PG). This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	3.91431e-64
NZ_CP011236.1\|WP_010929702.1\|247574_248930_-\|polynucleotide-adenylyltransferase-PcnB	gnl\|CDD\|130997	TIGR01942, pcnB, poly(A) polymerase. This model describes the pcnB family of poly(A) polymerases (also known as plasmid copy number protein). These enzymes sequentially add adenosine nucleotides to the 3' end of RNAs, targeting them for degradation by the cell. This was originally described for anti-sense RNAs, but was later demonstrated for mRNAs as well. Members of this family are as yet limited to the gamma- and beta-proteobacteria, with putative members in the Chlamydiacae and spirochetes. This family has homology to tRNA nucleotidyltransferase (cca).	4.58369e-147
NZ_CP011236.1\|WP_010929708.1\|258841_259822_-\|AEC-family-transporter	gnl\|CDD\|223751	COG0679, COG0679, Predicted permeases [General function prediction only].	1.13912e-41
NZ_CP011236.1\|WP_003814356.1\|241384_242428_-\|TRAP-transporter-substrate-binding-protein	gnl\|CDD\|270320	cd13602, PBP2_TRAP_BpDctp6_7, Substrate-binding domain of a pyroglutamic acid binding DctP subfamily of the tripartite ATP-independent periplasmic transporters; contains the type 2 periplasmic binding protein fold. DctP6 and DctP7 groups of the TRAP transporters that involved in pyroglutamic acid transport. TRAP transporters are a large family of solute transporters ubiquitously found in bacteria and archaea. They are comprised of a periplasmic substrate-binding protein (SBP; often called the P subunit) and two unequally sized integral membrane components: a large transmembrane subunit involved in the translocation process (the M subunit) and a smaller membrane of unknown function (the Q subunit). The driving force of TRAP transporters is provided by electrochemical ion gradients (either protons or sodium ions) across the cytoplasmic membrane, rather than ATP hydrolysis. This substrate-binding domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	1.99378e-85
NZ_CP011236.1\|WP_010929701.1\|247086_247578_-\|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase	gnl\|CDD\|172582	PRK14092, PRK14092, 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase.	2.78166e-87
NZ_CP011236.1\|WP_010929706.1\|256745_257282_-\|bifunctional-alanine-racemase/tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-ATPase-subunit-type-1-TsaE	gnl\|CDD\|223873	COG0802, COG0802, Predicted ATPase or kinase [General function prediction only].	2.28113e-54
NZ_CP011236.1\|WP_010929707.1\|257433_258825_+\|class-II-fumarate-hydratase	gnl\|CDD\|234779	PRK00485, fumC, fumarate hydratase; Reviewed.	0
NZ_CP011236.1\|WP_003814339.1\|250579_251629_+\|phosphoribosylformylglycinamidine-cyclo-ligase	gnl\|CDD\|235439	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional.	0
NZ_CP011236.1\|WP_003814355.1\|242598_244701_+\|TRAP-transporter-large-permease-subunit	gnl\|CDD\|129868	TIGR00786, TRAP_transporter_permease_protein_SiaT, TRAP transporter, DctM subunit. The Tripartite ATP-independent Periplasmic Transporter (TRAP-T) Family (TC 2.A.56)- DctM subunit TRAP-T family permeases generally consist of three components, and these systems have so far been found in Gram-negative bacteria, Gram-postive bacteria and archaea. Only one member of the family has been both sequenced and functionally characterized. This system is the DctPQM system of Rhodobacter capsulatus (Forward et al., 1997). DctP is a periplasmic dicarboxylate (malate, fumarate, succinate) binding receptor that is biochemically well-characterized. DctQ is an integral cytoplasmic membrane protein with 4 putative transmembrane a-helical spanners (TMSs). DctM is a second integral cytoplasmic membrane protein with 12 putative TMSs. These proteins have been shown to be both necessary and sufficient for the proton motive force-dependent uptake of dicarboxylates into R. capsulatus. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	2.77055e-96
NZ_CP011236.1\|WP_019247543.1\|255429_256815_-\|N-acetylmuramoyl-L-alanine-amidase	gnl\|CDD\|182376	PRK10319, PRK10319, N-acetylmuramoyl-L-alanine amidase AmiA.	1.25625e-84
NZ_CP011236.1\|WP_003814332.1\|254648_255287_+\|membrane-protein	gnl\|CDD\|182775	PRK10847, PRK10847, DedA family protein.	1.10927e-69
NZ_CP011236.1\|WP_003814363.1\|239165_239576_+\|4-carboxymuconolactone-decarboxylase	gnl\|CDD\|131478	TIGR02425, putative_gamma-carboxymuconolactone_decarboxylase, 4-carboxymuconolactone decarboxylase. Members of this family are 4-carboxymuconolactone decarboxylase, which catalyzes the third step in the catabolism of protocatechuate (and therefore the fourth step in the catabolism of para-hydroxybenzoate, of 3-hydroxybenzoate, of vanillate, etc.). Most members of this family are encoded within protocatechuate catabolism operons. This protein is sometimes found as a fusion protein with other enzymes of the pathway, as in Rhodococcus opacus, Streptomyces avermitilis, and Caulobacter crescentus. [Energy metabolism, Other].	1.36265e-47

>NZ_CP011236.1|WP_003814339.1|250579_251629_+|phosphoribosylformylglycinamidine-cyclo-ligase
MTNQHSAPLTYRDAGVDIDAGDALVDRIKPLAARTMRPGVLAGIGGFGALFEVPKKFREPVLVSGTDGVGTKLRLAFDWNRHDTVGIDLVAMSVNDILVQGAEPLYFLDYFACGKLSVDTAAAVVGGIARGCELAGCALIGGETAEMPGMYPDGEYDLAGFAVGAVDKSAIIDGKSIQPGDVVLGLASSGAHSNGYSLVRKILERAGARPDQDFHGQPLVDVVMAPTRIYVKQVLAALDRHGPAIKGLAHITGGGLLDNVPRILQPGMAAQLQRDGWEMPKLFQWLQQQGSVADAEMHRVFNCGIGMVLVVAADQADAVAATLREQGEIVNRIGEIVPQQDGMAQTVVV
>NZ_CP011236.1|WP_010929704.1|249625_250327_-|DnaA-regulatory-inactivator-Hda
MNRQLLLDVLPAPAPALNNYIAGPNGQALAAAHALTAGRAIYLWGPAGCGRTHLLRGLSARPEAIYIDAARAAQSLRELAEADSTAPMPRLVAVDDVHRMDDARQAGLFALYNRWRESAATGRAFALAVSGDRAPMSLPLREDLRTRLGWDLVFRLDPLSDADKLAALTAQAAERGLQLAPEVINWMLTHHERDIRKLAALLDALDRYSLATGRPITIPLLRAMLADPHSQAT
>NZ_CP011236.1|WP_010929703.1|248930_249629_-|HAD-IB-family-hydrolase
MTTRRLALFDLDHTLLPLDSDYQWADFLARTGRAGDPAEARRRNDDLMERYNRGELTAEQAAEFMLGLLAAHSPVELAAWHEEFMRDVIRPSLTVQAVDVVRGHLAAGDLCALVTATNSFVTAPIARAFGVQHLIATDPEYRDGRYTGRIEGTPSFREGKVVRVNQWLAGMGLALGDFAESYFYSDSVNDVPLLEAVTRPIAANPSPGLREIAQARGWQVIDLFDHLEDAKS
>NZ_CP011236.1|WP_010929702.1|247574_248930_-|polynucleotide-adenylyltransferase-PcnB
MITETIRKFVGRLFAPALRGPQRIGAERHGIDRRNVSRHAIKVCDVLRQHGYEAYIVGGAVRDLIVGLEPKDFDVATNATPEQIRPLFRRARIIGRRFQLVHVVFGQEIIETSTFRAPASDDQETDEHGRILRDNVFGSQEEDAARRDFTMNALYYDPHTEEVIDYHQGVQDLKKRQVRIIGDPVKRYREDPVRMLRAVRFAAKLNGSIDTATRQPIRTMASLIENVPASRLFDEMLKLLTCGHAMDCLRQLRNDGLHHGLLPLLDVVLEQPGGENFVELALERTDARVRAGKTISPSFLFAALLWQLVDVRWKQLRAQGEHNIPALVQAADSVLDEQTEKLAIQRRFSSDMREIWFMQPRFERRAGKTIYRMLEQPRFRAACDFLQLRAAAGEFDSVLAQWWMDLANGDDATRAEMIEETAHLPRETGDAPAQKRRRPRRRPSNRPREPQ
>NZ_CP011236.1|WP_010929701.1|247086_247578_-|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase
MNGSPASTLAYVGLGASLGDAAATLRSVLAELAAAPGILACKASRLYRTAPVEAQGPDFVNAVAALDTTLAPLDLLDLLQALEQRHGRERPYRNAPRTLDLDLLLYGEQAIDHPRLSVPHPRMHERAFVLAPLCELVPALRLAQGDCAALLAALEDQAIEPLR
>NZ_CP011236.1|WP_003814351.1|246111_247068_+|tripartite-tricarboxylate-transporter-substrate-binding-protein
MKKRIWGTLLAAAMTVGSGAAHAGYPDKAVRIVVPFAAGGGVDALARPFAKELGDILGQSIVVENKPSNTGQIGATDVARAAADGYTLLLSSAAFATTPAFYPQVPYDPVKDFSPVMIMAAAPQVLVASNRFKAASLPDVLAQARQSDRINFALSASTGIQALATAMLAGQGGVTFMTIPYKGAGAAFMDLISGEVDLMIDNPASSLVHVRAGKLRVLATTGSKRMAILPDVPTVAETLPGFEARNWFVLAAPQGTPPAVIQKLNEASARALNTPAMRQMLERDGIDLVADSPAHAAAFLQDEIAKWGKVVKEGNLQP
>NZ_CP011236.1|WP_003814355.1|242598_244701_+|TRAP-transporter-large-permease-subunit
MSSIEMPAPVMPIEPAELAGASPYPLAIDQDFCLIRWMAAISRACGALATVALLLMALSMCYEIFSRYLFNAPTAWATEISGYLLVATVFFGLAAAQASNSHVQVELWIDRLSAPVRLRVELLCQWLALLFCVVLGWQMASFNVREYLNDTRDWGLLSTPQWMPELAVSVGMVVFCMSILVDIYRLSPPAQAWRRWLTPALLALLAAALVALGANAVPMAAGGRFDWGMALIVAALLACAWAWSGVRTLAHVVLVVGGCAVLYGLARGQSLGWVAFLLVASMMLLLFLGVRIGVALGLVGLFGVYFLLSRPQLSLLAERAWSSTNTFTLTAVPMFIFMGGLLLRSGITAGMFDALVRWFGRAPGGLAHASAGASAVFAAVSGSSLATAATLGKVACPDMIERGYSPRLTYGVAAAGATLGILIPPSIPMIIYGTTVGASVTHLFLAGMLPGLLLMACFMLGALVWALAVPGSAPVARAYTLREKLSASRGMVPFVAIIGAVLGSMYTGVATPTEAAAIGAVSAFVLCLVRRQLSWRALFEIAHDSAKVTALLLLIVVGAGIFSWVFDYLRLPREVVNLIQGADLSPALIVAAMVLAYLVLGMFVESIAMMLMTLPVTYPIAMSLGLDPIWFGVFLVLMIELGLITPPVGMVLFVLRSMNEKARFTDIIRGALPFVLIILLFLCLIYIYPQIVMWLPQQVK
>NZ_CP011236.1|WP_003814356.1|241384_242428_-|TRAP-transporter-substrate-binding-protein
MSQRFPLPRGFQAALAAAALCTASWSGAAAAQTYDLTMAVITSPGDGYSILTASVPERVAKATDGKVKVTVSDSLVPPAQIATAVREGRVDMSAALHTYLAADEPRMGIFNLPGLINNIQEYKQVCDAFWCEDTRKIWKDKWNAIVLAEGAWCTQQLFSKDPIHKVEDFKGKRLRVHNPQTAEVVNALGGKPVAMPTTEIFPALERGVIDGLFISTCVGGSLEFWRIAKNVQNWSLGPINGWAILANPDSWQKLPADVQKQVQGAMDALQQEAFGNYDTFVSNAQQEMMKKGVTFWVAPEEERAKLMQQQYIGPSYEAWNKRAKQVGFDGPAYLDRVRTTLGKSASN
>NZ_CP011236.1|WP_003814358.1|240597_241341_-|GntR-family-transcriptional-regulator
MPFPFCNTNRMTSPAAPEGEFKVQRVASVLRHSVTESIRNAILVGRFRPGERLPERELCEMTGVSRTLVREALRQLESEGLIVVIPHRGPVVERLSPEQARGIYQVREELEGLACQLFAEHATEPQLAALQEAFQALKRALTRGTPLEQIAAKNAFYQQLLDGAGNEALTTTLRLLNSRVMLLRSTSMQAPGRAKHSVAELSNLLQALVARDGKAARKAGSLHVRNAASVAIAILQDSLADAAATAE
>NZ_CP011236.1|WP_003814363.1|239165_239576_+|4-carboxymuconolactone-decarboxylase
MALRPEFQTEQFQKGLAVRRAVVGDAYVDKSLNSADDLTASLQKLVTEYCWGEVWTRPGLERKTRSFLNLAMLIALNRPNELRLHLRGAINNGVTKDEIVEVVLQAAIYCGVPAALDAMKAVREVVETMEKEGAFA
>NZ_CP011236.1|WP_003814337.1|251734_252676_-|tRNA-(adenosine(37)-N6)-dimethylallyltransferase-MiaA
MTPRAIICLAGPTAAGKSASTLALAQRWPLEIINVDSATIYRGMDIGTAKPSAAERAQVPQHLLDIRDPAQSYSAAEFRADALRLIAEIHARGRIPLLAGGTMLYYKALREGLDDLPQADPALRAELEARAARLGWPALHAELALLDPATAARLSPNDSQRIQRALEICRLAGQPMSALLQGERRGDAPSPYRYVTLSLEPSERAALHARIAQRFDAMLAAGLVEEVRGLHARPDLHPGLPSVRCVGYRQMWSYLDGDIDLDTAREQGVAATRQLAKRQLTWLRAQPERVIIDCLAGDAVARTVDAMARALPD
>NZ_CP011236.1|WP_010929705.1|252672_254562_-|DNA-mismatch-repair-endonuclease-MutL
MSDRRPIATLPDLLISQIAAGEVIERPASVLKEILENAIDAGARAIEVRLEGGGIRRIAVTDDGSGIPPEELPLALTRHATSKIRSLDELESVASMGFRGEALASIASVADLTIISRTRGAEHAWQIDGGSLQVSPASGPPGTTIDVRQLFDRVPARRKFLRSEATEFGHCVDAMERIALAHPEVAFRLFHHDRAQRQWLPADHGQRIRDVLGAEFVGHVLPVLAAAGAIALMGMVTRPTAARARADRQYLYVNGRFVRDRTVSHALRSAYADVLHGDRQPAYVLYLDIDPGAVDVNVHPAKHEVRFRDSGAVHRFVSQVVGQTLAQTGGAEAVPAGVPDGAAPDTAYAGEPAAAAPGLAEPRAPYPAAYPSPGQSPYQGSPARPHTQVPFRLHGEPAGIPATDWQSLYRPLPGDAAPAATALRAAPATPLPTADEHPLGQALAQLHGIYILAQNSRGLVLVDMHAAHERVVYEQLKRALDDRALPRQDLLVPVVFHAAEKDVALVEEHETQLNELGFEMRPSGPASIAVRSVPALLARGDIESLARAVLRDLGAVGVSRLLTEQRNELLSTMACHGSVRANRRLTLEEMNALLRQMEITERADQCNHGRPTWVQWSVNDLDKLFLRGQ
>NZ_CP011236.1|WP_003814332.1|254648_255287_+|membrane-protein
MLDFFNMVLHIDQTLGIWVEQYGVWVYLVLFLIVFAETGLVVLPFLPGDSLLFIAGAFGATGHMDPVLTAALLIVAAISGNTVNYTIGRYIGPRVFSMNLRFLDRNALMRTHAFYEKHGGKTIVMSRFIPVIRTFAPFVAGVADMRLARFQLFNIGGALLWVISLVAAGYFFGNIPLVREHLNTIVLIGLGAAIVPVVIGALVRLLQVRRGQ
>NZ_CP011236.1|WP_019247543.1|255429_256815_-|N-acetylmuramoyl-L-alanine-amidase
MVERDCPPAHGALSPRAAARRRLISVAATLLVLPVVPRLAHAATILAVRTWPADEYTRVTLELDSELKAEHFTLENPHRLVVDIEGLSVNAALNDLVSKVRHDDPYIQGLRVAQNRPNVVRLVFDLKQSVAPQVFTLKPVADYQYRLVLDLYPKVAQDPLMAILNKQSGPDVDDPLARVLDEIARNQPAPDQPAAPLARGQEPAPALPAPPIKPLPAPGRSASRKRMLTIALDPGHGGEDPGAIGRSGLREKDVVLRIARRLKTLIDAQPYMRAYLTRDDDYFVPLHVRVQKARRVRADLFVSIHADAFIKPTANGSSVFALSERGASSTQARWLADKENAADLIGGVNLGSHDRQVAKVLLDLSTTAQINDSLKVGSAFLDEIKKINRLHKNRVEQAGFAVLKAPDIPSILVETAFISNPKEEALLRSAAHQEKLAQAMMTGIDRYFTANPPLARVGDVS
>NZ_CP011236.1|WP_010929706.1|256745_257282_-|bifunctional-alanine-racemase/tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-ATPase-subunit-type-1-TsaE
MSAPPTTLCLHLPDEAATENLARQLAPLVDGRRGGQPGGQIHLQGDLGAGKTAFTRALLRECGIQGRIKSPSYALLESYKVSNLYFYHLDFYRFSDSREWLDAGFRDLLRDDAVVLIEWPERAAGLLPPPDLLISLAYADQGRDASLTAHTARGQTWLNAIVPPPTARSLPAPPPADA
>NZ_CP011236.1|WP_010929707.1|257433_258825_+|class-II-fumarate-hydratase
MKTRTEKDTFGPIEVPEQHLWGAQTQRSLHFFAISTEKMPVPLVAAMARLKRAAAKVNAELGELDPQVADAIMRAADEVIAGKWPDEFPLSVWQTGSGTQSNMNMNEVLANRASELLGGERGEGRKVHPNDHVNRGQSSNDTFPTAMHVAAAVEVEHRVLPALKALRGTLAAKSAAFYDIVKIGRTHLQDATPLTLGQEISGYVAQLDLAEQQIRATLAGLHQLAIGGTAVGTGLNAHPQFSAKVSAELAHDTGSAFVSAPNKFQALASHEALLFAHGALKTLAAGLMKIANDVRWLASGPRSGLGEISIPENEPGSSIMPGKVNPTQCEAVTMLAAQVMGNDVAINVGGASGNFELNVFKPLVIHNFLQSVRLLADGMVSFDKHCAAGIEPNRERITELVERSLMLVTALNPHIGYDKAAQIAKKAHKENLSLKEAALALGHLTEAQFAEWVVPGDMTNARR
>NZ_CP011236.1|WP_010929708.1|258841_259822_-|AEC-family-transporter
MSENSSLRRDAEAPLLSIFLPGSMSVALLVLPDFMLVALGWALRHKLGFSREFFAGTERMVYFVLFPALLFQSILRTPISAGHAMQLLQATAALMACGVALAWLAGPVLRPAPVALASAAQCGYRFNTYIGLALAASLAGGPGQTIMALIVGFAVPMANVAAVYGLARHSGNGLLRELARNPLLVSTLLSLACNLAGLSLPGPIDTVMARLGAAALALGIMCVGASLAWEGGKGHGRLIGWMLAVKLAAMPSAALGIAWALGLPALETRMLVLFSALPTASAAYVLAMRMGGDGRMVAVLISLGTLASAATIPLWLTAAAGLGAPN
>NZ_CP011236.1|WP_003814324.1|259957_260941_+|tripartite-tricarboxylate-transporter-substrate-binding-protein-BugE
MNKVRTLVQAIAVATGLVAAAGAQAADAYPSKAIRVIVPFAPGGSTDIIARLVTQRMSQELGQPMVVENKGGAGGAIGASEAARAEPDGYTLSIATVSTMAVNPACRPKDLPYDPIKDFQPVTNFANTANVVAVNPKFPAKDFKGFLEELKKNPGKYSYGSSGTCGVLHLMGESFKMATGTDIVHVPYKGSGPAVADAVGGQIELIFDNLPSSMPQIQAGKLRAMAIAWPTRIDAIKDVPTFADAGFPVLNQPVWYGLLAPKGTPMDVVNKLRDAAVVALKDPKVIKALDDQGSAPSGNTPEEFAKEIKEQYDWAQDVVKKQNIKLD
>NZ_CP011236.1|WP_010929709.1|261005_261905_-|LysR-family-transcriptional-regulator
MRLRHIEIFEAIRRTGSLTEAAAALHISQPAASKLLAHAEAQLGFKLFERVKGRLVATREAEILAPEVARLNQDLGSVRRLAASLRDRPHGHLRLGCAPALGLGLLPGVVRASRDAQPGITFDIHTHHSAELVQGLLAHELDLAITFDANNHPGLTRTSLGHTELVHLSRLPGAGTTRLQELGGETLIVLDARDASGSLLQMALDAQGLAPRVAIQVQTHYVACALAEAGCGDAVVDAITARAMLRPGMALRRLEPALRVPISVMTRSQDALSTLHHDFIERLRQACSVLQAQPAPQPE
>NZ_CP011236.1|WP_003814321.1|262011_263766_+|gamma-glutamyltransferase
MPLRTLLAALCAAAICQAPAWAREAPGVAREDVNPEIASARSERAQAHAQRYMIATANPLASEAGYRILRAGGSATDAIIAAQLVLNLVEPQSSGIGGGAFMVHYDRGAGELRVYDSRETAPAAARPDRFLREGKPLSYAESVNNGRAVGTPGLLRGLELAHRQHGKLPWQALFEPAIAMAEQGFAVSPRLHESIAGDKALAAQPAAARYFYGPDGQAWPVGHRLRNPEFAATLRSIAREGADAFYRGPIARDIVAAVRAHPTPGDLAEADLAGYRAVVREPVCGLYRGYRLCGAPPPSSGPLAVLQMLGELEQYPLARMRPGSVEAVHYFSEAGRLAFADRDFYVADPAFVDVPVRALLDPAYLRQRGALIRPDRSMKTALPGDPQGLLAERARDDAIEVPSTSHLVAVDAAGNVVSMTSTIEAAFGSKIFVRGFLLNNEMTDFSSSYRDPEGRLVANRVEPGKRPRSSMAPMIVFRAGKPVLALGSPGGSAIINYVAKTLVGVLDWKLDVQQAIALPNLGSRNKETELERGTALEALAPALRRMGHEVRITDFPSGIQGIVIGPHGLAGGADPRREGLALGD

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Crispr_ID: NZ_CP011236_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011236_2

625049-625158

Orphan

Consensus_repeat	Method
GGGGACAGATACCGTCTTGGCCGTCAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP011236_2

>merge|NZ_CP011236|2|625049-625158|CRISPRCasFinder
GGGGACAGATACCGTCTTGGCCGTCAAGCGTCGATGGCGTACAGCAGTGTGCCTGTCCCGGCGGGGACAGGCACCCTCCCTGCGGGGACAGATACCGTCTTGGCAGTCAA

>NZ_CP011236|2|2|625049-625158|CRISPRCasFinder
GGGGACAGATACCGTCTTGGCCGTCAA	GCGTCGATGGCGTACAGCAGTGTGCCTGTCCCGGCGGGGACAGGCACCCTCCCTGC
GGGGACAGATACCGTCTTGGCAGTCAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011236.1\|WP_010931353.1\|639791_640880_-\|NAD(P)H-binding-protein	unknown	unknown	gnl\|CDD\|187652
NZ_CP011236.1\|WP_010931355.1\|629531_630302_+\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|369777
NZ_CP011236.1\|WP_003814742.1\|624654_625047_+\|OsmC-family-protein	unknown	unknown	gnl\|CDD\|224679
NZ_CP011236.1\|WP_023994844.1\|622860_623832_+\|tripartite-tricarboxylate-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270296
NZ_CP011236.1\|WP_010931356.1\|627290_628700_-\|transglycosylase-SLT-domain-containing-protein	unknown	unknown	gnl\|CDD\|182727
NZ_CP011236.1\|WP_010930179.1\|621814_622765_+\|IS481-like-element-IS481-family-transposase	unknown	unknown	gnl\|CDD\|366234
NZ_CP011236.1\|WP_010931357.1\|623836_624517_-\|tellurite-resistance-TerB-family-protein	unknown	unknown	gnl\|CDD\|377342
NZ_CP011236.1\|WP_003818344.1\|633707_634586_-\|fatty-acid-desaturase	unknown	unknown	gnl\|CDD\|366126
NZ_CP011236.1\|WP_010931362.1\|612905_613784_-\|septum-site-determining-protein-MinC	unknown	unknown	gnl\|CDD\|178806
NZ_CP011236.1\|WP_019247959.1\|635512_638491_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|375438
NZ_CP011236.1\|WP_003820957.1\|613895_615659_-\|glutamine--tRNA-ligase/YqeY-domain-fusion-protein	unknown	unknown	gnl\|CDD\|235424
NZ_CP011236.1\|WP_003814250.1\|611977_612793_-\|septum-site-determining-protein-MinD	unknown	unknown	gnl\|CDD\|225447
NZ_CP011236.1\|WP_010931361.1\|615774_617115_+\|cytochrome-ubiquinol-oxidase-subunit-I	unknown	unknown	gnl\|CDD\|376587
NZ_CP011236.1\|WP_010931070.1\|638844_639795_+\|IS481-family-transposase	unknown	unknown	gnl\|CDD\|366234
NZ_CP011236.1\|WP_003814739.1\|626410_627196_-\|enoyl-ACP-reductase-FabI	unknown	unknown	gnl\|CDD\|180789
NZ_CP011236.1\|WP_005013747.1\|630808_631759_-\|IS481-like-element-IS481-family-transposase	unknown	unknown	gnl\|CDD\|366234
NZ_CP011236.1\|WP_003814239.1\|619608_620310_-\|response-regulator	unknown	unknown	gnl\|CDD\|181883
NZ_CP011236.1\|WP_010927090.1\|628710_629511_-\|hydroxyacylglutathione-hydrolase	unknown	unknown	gnl\|CDD\|274569
NZ_CP011236.1\|WP_010927010.1\|618184_619609_-\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|236531
NZ_CP011236.1\|WP_010931354.1\|630344_630812_+\|ribonuclease-HI	unknown	unknown	gnl\|CDD\|178927

Protein	Function_ID	Function_description	E-value
NZ_CP011236.1\|WP_010931353.1\|639791_640880_-\|NAD(P)H-binding-protein	gnl\|CDD\|187652	cd08948, 5beta-POR_like_SDR_a, progesterone 5-beta-reductase-like proteins (5beta-POR), atypical (a) SDRs. 5beta-POR catalyzes the reduction of progesterone to 5beta-pregnane-3,20-dione in Digitalis plants. This subgroup of atypical-extended SDRs, shares the structure of an extended SDR, but has a different glycine-rich nucleotide binding motif (GXXGXXG) and lacks the YXXXK active site motif of classical and extended SDRs. Tyr-179 and Lys 147 are present in the active site, but not in the usual SDR configuration. Given these differences, it has been proposed that this subfamily represents a new SDR class. Other atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	1.76863e-97
NZ_CP011236.1\|WP_010931355.1\|629531_630302_+\|methyltransferase-domain-containing-protein	gnl\|CDD\|369777	pfam08241, Methyltransf_11, Methyltransferase domain. Members of this family are SAM dependent methyltransferases.	9.0439e-10
NZ_CP011236.1\|WP_003814742.1\|624654_625047_+\|OsmC-family-protein	gnl\|CDD\|224679	COG1765, COG1765, Predicted redox protein, regulator of disulfide bond formation [Posttranslational modification, protein turnover, chaperones].	4.86152e-16
NZ_CP011236.1\|WP_023994844.1\|622860_623832_+\|tripartite-tricarboxylate-transporter-substrate-binding-protein	gnl\|CDD\|270296	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family; contains the type 2 periplasmic binding fold. Bug27 binds non-carboxylated solute nicotinamide, in contrast to BugD (aspartic acid transporter) and BugE (glutamate transporter) which both bind aliphatic carboxylated ligands. The Bug (Bordetella uptake gene) protein family is a large family of periplasmic solute-binding (PBP) receptors present in a number of bacterial species, but mainly in proteobacteria. Bug proteins are the PBP components of the tripartite carboxylate transporters (TTT). Their expansive expansion in proteobacteria indicates a large functional diversity.	2.71001e-129
NZ_CP011236.1\|WP_010931356.1\|627290_628700_-\|transglycosylase-SLT-domain-containing-protein	gnl\|CDD\|182727	PRK10783, mltD, membrane-bound lytic murein transglycosylase D; Provisional.	5.28635e-76
NZ_CP011236.1\|WP_010930179.1\|621814_622765_+\|IS481-like-element-IS481-family-transposase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	7.3142e-23
NZ_CP011236.1\|WP_010931357.1\|623836_624517_-\|tellurite-resistance-TerB-family-protein	gnl\|CDD\|377342	pfam04391, DUF533, Protein of unknown function (DUF533). Some family members may be secreted or integral membrane proteins.	5.6465e-62
NZ_CP011236.1\|WP_003818344.1\|633707_634586_-\|fatty-acid-desaturase	gnl\|CDD\|366126	pfam00487, FA_desaturase, Fatty acid desaturase.	2.20669e-12
NZ_CP011236.1\|WP_010931362.1\|612905_613784_-\|septum-site-determining-protein-MinC	gnl\|CDD\|178806	PRK00030, minC, septum site-determining protein MinC.	3.47756e-166
NZ_CP011236.1\|WP_019247959.1\|635512_638491_-\|hypothetical-protein	gnl\|CDD\|375438	pfam17936, Big_6, Bacterial Ig domain. This domain is found in a wide variety of extracellular bacterial proteins often in multiple tandem copies.	1.32844e-07
NZ_CP011236.1\|WP_003820957.1\|613895_615659_-\|glutamine--tRNA-ligase/YqeY-domain-fusion-protein	gnl\|CDD\|235424	PRK05347, PRK05347, glutaminyl-tRNA synthetase; Provisional.	0
NZ_CP011236.1\|WP_003814250.1\|611977_612793_-\|septum-site-determining-protein-MinD	gnl\|CDD\|225447	COG2894, MinD, Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning].	7.6448e-163
NZ_CP011236.1\|WP_010931361.1\|615774_617115_+\|cytochrome-ubiquinol-oxidase-subunit-I	gnl\|CDD\|376587	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I. This family are the alternative oxidases found in many bacteria which oxidize ubiquinol and reduce oxygen as part of the electron transport chain. This family is the subunit I of the oxidase E. coli has two copies of the oxidase, bo and bd', both of which are represented here In some nitrogen fixing bacteria, e.g. Klebsiella pneumoniae this oxidase is responsible for removing oxygen in microaerobic conditions, making the oxidase required for nitrogen fixation. This subunit binds a single b-haem, through ligands at His186 and Met393 (using SW:P11026 numbering). In addition His19 is a ligand for the haem b found in subunit II.	2.21087e-123
NZ_CP011236.1\|WP_010931070.1\|638844_639795_+\|IS481-family-transposase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	5.27808e-22
NZ_CP011236.1\|WP_003814739.1\|626410_627196_-\|enoyl-ACP-reductase-FabI	gnl\|CDD\|180789	PRK06997, PRK06997, enoyl-[acyl-carrier-protein] reductase FabI.	1.22848e-177
NZ_CP011236.1\|WP_005013747.1\|630808_631759_-\|IS481-like-element-IS481-family-transposase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	9.05216e-23
NZ_CP011236.1\|WP_003814239.1\|619608_620310_-\|response-regulator	gnl\|CDD\|181883	PRK09468, ompR, osmolarity response regulator; Provisional.	4.05363e-90
NZ_CP011236.1\|WP_010927090.1\|628710_629511_-\|hydroxyacylglutathione-hydrolase	gnl\|CDD\|274569	TIGR03413, GSH_gloB, hydroxyacylglutathione hydrolase. Members of this protein family are hydroxyacylglutathione hydrolase, a detoxification enzyme known as glyoxalase II. It follows lactoylglutathione lyase, or glyoxalase I, and acts to remove the toxic metabolite methylglyoxal and related compounds. This protein belongs to the broader metallo-beta-lactamase family (pfam00753). [Cellular processes, Detoxification].	2.85848e-146
NZ_CP011236.1\|WP_010927010.1\|618184_619609_-\|HAMP-domain-containing-protein	gnl\|CDD\|236531	PRK09467, envZ, osmolarity sensor protein; Provisional.	3.78414e-42
NZ_CP011236.1\|WP_010931354.1\|630344_630812_+\|ribonuclease-HI	gnl\|CDD\|178927	PRK00203, rnhA, ribonuclease H; Reviewed.	4.07937e-102

>NZ_CP011236.1|WP_003814742.1|624654_625047_+|OsmC-family-protein
MTIQVRANTPGGLQYTATAEGHELPLAMPQPQGEGPDPHDYFDTALGGCKALTLMVYAQRKGLPLQAVDVDVVRDASEERKGIYRLTAKLKLHGDLDDAQIDELLKVADKCPLHKLMTATDIQVSTIVVE
>NZ_CP011236.1|WP_010931357.1|623836_624517_-|tellurite-resistance-TerB-family-protein
MSARQLLDQLLQSGQSLMQGAGAQAQQATQGGKGTFLAGLGGGALGAGALGLLLGSKKARKIGGKVAMYGGMAALGALAYRAYDQYQRNQAGGAAAPAPQTLDRLPPAPAEQHSNAVLVAMIGAAKADGHIGPDERQLLETELAKLSGDAGDRAWLEAELARPLDPAVIAQQARTPEMGAEMYLASLLVADEQSFMERAYLDELARQLKLPAELKQQLEAQVPAAA
>NZ_CP011236.1|WP_023994844.1|622860_623832_+|tripartite-tricarboxylate-transporter-substrate-binding-protein
MKSQVSILLAGCLLGAGAAAAQAPATYPDHAITIVVTFPPGGGTDLLARKLGAAMQQRLGQPVVVENRPGASGNIGARAVAEARPDGYTLLMVNSSFAVNPGVFRNLDFSPTRDFTAVINVAYVPSVIVTAEPAGDAGLPERLRQADTQSRTLAFASCGNGTPQHLAGEMLRQASGAWLQHVPYRGCGPALTDVLSRQVPLGIVTASSAAPFIHAGKLRALAVTSAQRSPLLPDVPTVAEQGAPGYELDQWHGLLAPAGTPPAVIQRLYEALSAIVAEPAMRRELESLGFNPVSEGPERFEALVQADIARFAALTARMGLRAD
>NZ_CP011236.1|WP_010930179.1|621814_622765_+|IS481-like-element-IS481-family-transposase
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWQRPHQGIGRAVPISRLNLDEYNLLTVHS
>NZ_CP011236.1|WP_003814239.1|619608_620310_-|response-regulator
MDNPHTKLLVVDDDPALRQLLADYLNRHGYDTLLAPDASDLAARITRYAPDLLVLDRMLPGGDGADACRRLRDQGEDIPVILLTARDEAVDRIIGLEAGADDYLGKPFDPRELLARIEAVLRRKRGPSALTKDAPVSFGPFVFDPATRQLLRDDTPVKLTGGEINLLEALVRNAGKPLSRERLLALARDDDGGERNDRAIDIAILRLRRAIEEDPKQPRWIQTVWGIGYRFSP
>NZ_CP011236.1|WP_010927010.1|618184_619609_-|HAMP-domain-containing-protein
MKLLRLPAPRSLRMRLILLVLGSVLLAQAATLATVSYFRHKFMEDVAIDYIATTIRTLRASLSQVPTDERAEFVRQASGNQWRLWSRSLPADARLQRWHRGPQEDEAERERMRREYERRHPPPDDIRRDLRGLVSELNERLSDGTRVALSRGPRPEIFISLAPSPSPDDAPPLREWLVIPLERLDPPVATPLIAFWVGGIGLVLLLAAWFSWHITRPLTRLADAADQLAAGQPQRVEPSGPHETRVLGERFNAMLDALAESDSVRRTLLSGLPHDLKGPLSRMWLRIEMADDPTLKEGLRKDLQDMQHMVDQFIGFVRGTDPAAYRYAPLALGEWLAERVGAWQGAGTDIRLQAPDNGALGIQADAVALGRLLDNLIGNALHHGAPPVEVSLRRDADMAVLEVSDHGPGIAPERRTEALRPFARLDDARTRTGNVGLGLALAEAIARAHGGGLELRQAPSGGLLVRITLPLAKA
>NZ_CP011236.1|WP_010931361.1|615774_617115_+|cytochrome-ubiquinol-oxidase-subunit-I
MNIPPLLLARAQFTASLGFLALFLAISLALAWLLLFFKLRARWSGQSGWTAAYRFWVRIFALAFVLALACAVPVLIQLGSLWSGLMDKIGNLAGPLLGYGVLSIFIVKSCFLGVMLFGQRRVSDAAHTLAVLMVAIGQLVAVGWVLALFSWLQTPDGAVLIDGRYQVYDWRAVVLNPSFGWRLGLTVLGAFLTAGFLMLGVTAMQALRRPLDDGERHAFRAGLTVALLASLLLGPVAAGMGEVTARLQPAKAAAAAGFWHSGAEPELVVFGWPSARAQANLAAVSLAGAGGRWLHRDASLGYLGLDKFSGMQPPVAFTFWSLRLALGLGLLMLAASCATLALTCRRGFDPVALPRWWLRVLSLLMFAGALGVVATWCYDLAGMQPYAVNRAVTQSEVLGPVTTPALLYSLAGHIALYAVLLAAFVGMLFHAARYGVVPVRKTGGSS
>NZ_CP011236.1|WP_003820957.1|613895_615659_-|glutamine--tRNA-ligase/YqeY-domain-fusion-protein
MTHAPTPPAASNFLRPIIEDDLQANRFQGKLWAGKPGPAALQAQGQPDPARIRTRFPPEPNGYLHIGHAKSICVNFGLARDYGGVCHLRFDDTNPEKEEQEYVDAIIEAVHWLGFDWQADGNDNLYFASDYFEFMYEFAEALVQAGHAYVDEQSAEEIRASRGTLTEPGTDSPWRDRPADESLLRLREMRDGKHPDGSLVLRARIDMASPNINLRDPVMYRVRHATHHRTGNAWCIYPMYSWAHPVEDALEGITHSICTLEFEDQRPFYDWILARLAELGKLARPLPHQYEFARLNLTYVVTSKRKLLQLVREGYVDGWDDPRMPTLFGLRRRGYTPSSIRLFCDRTAVSKSDSRIDYSLLEQAVRDDLDPVAPRSVAVLDPLKLVITNYPEGRSETCSAPRNPHDPQAGVREFPFTRELWIEQDDFREEPPKKYFRLFPGNTVRLKYGYVVRCTGFTKDESGKVVEVQAEYLPDTKSGTPGADSVKVKGNITWVSAAHAVPAQVHLYDRLFADAHPDGGDKDFLACLNPNSKQTVQAWLEPGIEAVPGATWQFERLGYFTVDSKDSRPEAPVLNRIVTLRDSWQAA
>NZ_CP011236.1|WP_010931362.1|612905_613784_-|septum-site-determining-protein-MinC
MNTESLALDFKSATLYAIRVVLHDADTTRLRAALDKRMADAGSFFENEPVVIDATRVDAPVDWPALLQALADHNLPPIGVVAEGANLQGARDAGLVPVELSTSVARAPQVIDTAPPNDVATPVPSVPEATAEATAKAGPQDDEADGEQADEAPAHNPESVPTRAARETTEANRPTATPPQSSSALVITKPLRSGQRVYARHTDLIVIGMVSQGAEVIADGNVHVYGPLRGKAMAGARGDTSARIFTTQLDAELLAVAGVYRVVEDKLDRALHNQPALVRLDGDTLRIEALKG
>NZ_CP011236.1|WP_003814250.1|611977_612793_-|septum-site-determining-protein-MinD
MTRIVVVTSGKGGVGKTTTSASFSAGLAMRGHKTAVIDFDVGLRNLDLIMGCERRVVYDFVNVIQGEASLKQALIKDKQLENLFILPASQTRDKDALTQEGVEKVIDELKEMGFDYIVCDSPAGIEAGALMAAYFADDALVVTNPEVSSVRDSDRILGILAAKSRRAVQGDEPVKEYLLLTRYNPKRVNDGEMLSLSDIEDILRIKLIGVIPESEAVLQASNQGLPAIHLKDTDVSEAYKDVVARFLGEERSLRFTDYEKPGLLKRLFGGK
>NZ_CP011236.1|WP_003814739.1|626410_627196_-|enoyl-ACP-reductase-FabI
MGFLAGKRILMTGVLSNRSIAYGIARACRDQGADLAFTYVGDRFKERITEFAASFGSDIVLPCDVAEDSQIDAAFAELGKRWDGLDGLVHAIGFAPREAIAGDFLDGLSRENFRIAHDISAYSFPAMAKAALPLMEGRKGSVLTLSYLGSERVVANYNTMGLAKASLEASVRYLATALGPRGIRANAISAGPIKTLAASGIKDFSSILKFVEANAPLRRNVTIEDVGNVAAFMLSDLAAGITGEITHVDAGFSTVVPGMEN
>NZ_CP011236.1|WP_010931356.1|627290_628700_-|transglycosylase-SLT-domain-containing-protein
MRFLRLLLPLFLAVLAGCAGTAKQNQAAGPSSNRYIAQDTSRTVDLTSPPSDAWDRIRRGFAIPNLNTDLAQEWTDYYASHPESVQRMAERAGKYLYFIVDEINRRGLPTELALLPFVESAYNPTALSRSQASGLWQFIPTTGQHFNLKQDWWRDERRDPIASTYAALDYLEKLFEMQGDWYLALASYNWGEGSVQRAMAKNEAAGLSTDYLSLNMPDETRNYVPKLQAIKNIIANPRKFAVVLPPVENTPYFVAVQKNRDIDIELAARLAEMPLDEFKALNPAFNRPLIRGEHAPTLLLPADRADRFNANLQNYKGDLSSWKVYHTRRGESYAAIAKRFGISEAKLRASNDIGSKRKVAADQALLIPGVPSGDGAANIQLASLSPPVGALDNVGEPRAAAAPRGKAPARVASARPNVRTHKVSSGDTLFGLARKYGTSVGALRALNNLKGNNLKLGSQLRIPGTGTRG
>NZ_CP011236.1|WP_010927090.1|628710_629511_-|hydroxyacylglutathione-hydrolase
MQTAPPLSAVVPLPAFSDNYIWALAHEGQAAVVDPGDAAPVLRWLRATGATLRAILLTHHHPDHVGGVLELVQATGATVYGPAGETLPHCDVRLAEGDRVTLPELALALEVLDVPGHTAGHIAYTGRAAGVERVLFCGDTLFAGGCGRLFEGTPAQMLDSLEKLSALPADTQVCCAHEYTLANLRWALAVEPANRTLQQWYQRAQELRNEGTPTLPSTIGQERETNPFLRTPHAAVAHAAAVWSGRSLATPVEVFAALRQWKNNFK
>NZ_CP011236.1|WP_010931355.1|629531_630302_+|methyltransferase-domain-containing-protein
MAEETPPIVELAEWFQTPPGQYVLAWEQAQFDEAVADIFGYYAWQVGLAEPNLLRANRMPFKAWVGAGVPPPELAQGWQACVAAAPEALPFESQSVDLLVLPHAFECAEAPHLVLREVERVLVPEGRVVISGFNPWSLWGARNLMPGMEAWLPLPLSAQVALPRLKDWFKLLSFEVERGRFGCYAPACRTDKWLRRWRFMERYGQRWWGLGGAVYVVTATKKVAAMRLIGPAWKTRRKRAQAASVVVNRQADDPGR
>NZ_CP011236.1|WP_010931354.1|630344_630812_+|ribonuclease-HI
MQNLEGSGDGQQVEMWTDGACKGNPGPGGWGVLMRAGQHEKTMHGGERQTTNNRMELMAVIEGLRALKRPCRVTIHTDSQYVMKGMTEWLANWKRRGWRTADKKPVKNVELWQALDEQVGRHQVQWRWVRGHAGDPGNERADALANQGMEAARGR
>NZ_CP011236.1|WP_005013747.1|630808_631759_-|IS481-like-element-IS481-family-transposase
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
>NZ_CP011236.1|WP_003818344.1|633707_634586_-|fatty-acid-desaturase
MVRPAEWLRHRRDWQSVLYLAALPALAAWQWVHGWHWALYAPMLFLTLGVGVIHHNHAHRRMWRPRWLNRLTDFWLTLLQGHPTFVFHAAHNANHHRYKHGPRDVARTYRFGGDTNHLAGYLLHPLQAVVVLYPLFLASLRRLRSRRPGVWRYCLRQYAAWLGLWGGLLALDPGKAFWLVIVPQLHGLHWLLATNYLQHAHADGGPGRHAALSYARNFEGWVNPLLFNIGLHTAHHENPRAHWSELRALHWQHYRDRVPSRLNERGLAPYMARVFVLGLFSRRCRTHTLMRP
>NZ_CP011236.1|WP_019247959.1|635512_638491_-|hypothetical-protein
MQLWLPDGTATSVRANAAGGFEASSAGDMTSGLIRARATDRYGDTSQEVTYAYTDTVDKTAPVLSIAGVATDEATGRVTVTGRSEPDAQVTIRFPGGGRKTVRADANGAYRVRSDGDLPAGVIVVQAADAAGNSTQAQQAYQDTVDRTAPEPVQIALDTDAATGRLTVSGQAEPGGSVTVTWPDGTTQTVRVDADGGFRVTSAGDAAQGDVVVVVADQAGNRAAPVRAHYADPVDRTAPMTPTVRHATDAQTGRVTVMGRTEAGALVTVQFPDGSSKTVRAQNDGGYAATSDTDMVSGPIVVSAGDADGNRTPAQQVMYTDTLDKTAPASPSLTVREDAASGRATVTGQAEPGAAVRVVFPNGEAQTVTAGSDGAYSVTSTADMVAGEITVVAADASGNQSAPARTVFADAVDKTAPAAPTLALSEAADSGRLTVSGRTEPGASVRVTFPDGETVTVTAKADGTYTATSRADMIGGNVTVVATDTAGNAAAPVRAAYADTVDRTPPVLDTPVLNVASDSGRVTVTGVTEPGARVQVAIPGESLQTVTADSAGRYRAVSPGDVLQSGTVRVIATDAHGNASAPRDVPYQDAVDRTAPPLTIEAAVEQARTGVVNVSGKTEPNLMVSATFPDGQTAQARADGQGRYQLASPADVARSGRIAVSASDAAGNRAAARAEFTDQVDKTAPAVTIRAVTEQAGTGVATVSGATEPGATVSVTFPDGQVARATADRSGAYTVHSARDVTARGNISVIATDAAGNASPSVSRQFSNTVADTVPPSLTIAMVTTDPGNGRITVSGVTEAGARVHVVFPGGASDTVTADSKGGYRATSAGDVGSGAVTAQATDASANRSPLKTYAYTDAWQPRQLSAKDFSQSRYFVPLTTRGGTDNEPLLRITTNQQIPTAELRVALKPYKTEDRAGRLVREAITLKWGNAPGVGGDARALHFYVPDSAKAKLRKELTEVERSNDYKFWIEFTDTRFGGVARLYIKVISTL
>NZ_CP011236.1|WP_010931070.1|638844_639795_+|IS481-family-transposase
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEGAGWDFVFVAIDDHARVAFTDIPPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
>NZ_CP011236.1|WP_010931353.1|639791_640880_-|NAD(P)H-binding-protein
MTGSTAGKVLVVGALGVVGRAALEHFGQRPGLARVGLSRHAPDFAPEASWVSADLRDAQATRAALAAHGDATHVVYAALNEQPDLLKGWRDSGNVDLNTGMLRNTLDALREAPLRHVTLLQGTKAYGVHTGRPMPVPARETDAVRDHANFYFDQQDLLAERAAAQGFGWTIFRPQIVLGVALGSAMNPVATLGAYAALSREAGQPLRYPGHPHLLTECTDARLIARAIAWAWDEPRAHGEAFNIANGDVVLWQPVFERLAALFGMPLGEPVDTRMREAMPQLAERWRAIAERERLAVPELRDLIGLSWQYADATWAARHPLPVPPLVSTIKLRQAGFGDCIDTQDCIVEHLREMQRLRYLPR

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Crispr_ID: NZ_CP011236_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011236_3

2122937-2123064

Orphan

Consensus_repeat	Method
AAAAAGCCCCCTCGGGGGGCAGCAAGCCCGCATAGCGGGCGCAGCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP011236_3

>merge|NZ_CP011236|3|2122937-2123064|CRISPRCasFinder
AAAAAGCCCCCTCGGGGGGCAGCAAGCCCGCATAGCGGGCGCAGCGTGGGGGCACTACTTTGCCGCTGGGCCGCCCCAAGGCAAAAAGCCCCCTCGGGGGGCAGCAAGCCCGCGTAGCGGGCGCAGCG

>NZ_CP011236|3|3|2122937-2123064|CRISPRCasFinder
AAAAAGCCCCCTCGGGGGGCAGCAAGCCCGCATAGCGGGCGCAGCG	TGGGGGCACTACTTTGCCGCTGGGCCGCCCCAAGGC
AAAAAGCCCCCTCGGGGGGCAGCAAGCCCGCGTAGCGGGCGCAGCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011236.1\|WP_003812456.1\|2130659_2131172_+\|Fe-S-protein-assembly-co-chaperone-HscB	unknown	unknown	gnl\|CDD\|235133
NZ_CP011236.1\|WP_010930571.1\|2131301_2133164_+\|Fe-S-protein-assembly-chaperone-HscA	unknown	unknown	gnl\|CDD\|235360
NZ_CP011236.1\|WP_019247935.1\|2119047_2119779_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|270296
NZ_CP011236.1\|WP_003812458.1\|2130333_2130657_+\|iron-sulfur-cluster-assembly-protein-IscA	unknown	unknown	gnl\|CDD\|213674
NZ_CP011236.1\|WP_003812463.1\|2128142_2128655_+\|Fe-S-cluster-assembly-transcriptional-regulator-IscR	unknown	unknown	gnl\|CDD\|273927
NZ_CP011236.1\|WP_010930569.1\|2127435_2127927_+\|low-molecular-weight-phosphotyrosine-protein-phosphatase	unknown	unknown	gnl\|CDD\|319971
NZ_CP011236.1\|WP_010930562.1\|2112320_2113118_+\|enoyl-CoA-hydratase/isomerase-family-protein	unknown	unknown	gnl\|CDD\|223955
NZ_CP011236.1\|WP_003812478.1\|2118371_2119013_+\|CoA-transferase-subunit-B	unknown	unknown	gnl\|CDD\|188219
NZ_CP011236.1\|WP_019247244.1\|2123866_2125069_-\|aspartate/tyrosine/aromatic-aminotransferase	unknown	unknown	gnl\|CDD\|181731
NZ_CP011236.1\|WP_010930563.1\|2113542_2114700_+\|thiolase	unknown	unknown	gnl\|CDD\|180434
NZ_CP011236.1\|WP_019247934.1\|2119796_2120009_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|270296
NZ_CP011236.1\|WP_010930565.1\|2117710_2118379_+\|3-oxoacid-CoA-transferase-subunit-A	unknown	unknown	gnl\|CDD\|131482
NZ_CP011236.1\|WP_003812491.1\|2113114_2113546_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224462
NZ_CP011236.1\|WP_005012067.1\|2120579_2121530_+\|IS481-like-element-IS481-family-transposase	unknown	unknown	gnl\|CDD\|366234
NZ_CP011236.1\|WP_003812460.1\|2129921_2130332_+\|Fe-S-cluster-assembly-scaffold-IscU	unknown	unknown	gnl\|CDD\|183087
NZ_CP011236.1\|WP_010930570.1\|2128672_2129884_+\|IscS-subfamily-cysteine-desulfurase	unknown	unknown	gnl\|CDD\|184450
NZ_CP011236.1\|WP_010930564.1\|2114721_2115498_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|235546
NZ_CP011236.1\|WP_010930566.1\|2123087_2123738_-\|transcriptional-repressor-LexA	unknown	unknown	gnl\|CDD\|234688
NZ_CP011236.1\|WP_010930568.1\|2125146_2127183_+\|excinuclease-ABC-subunit-UvrB	unknown	unknown	gnl\|CDD\|235395
NZ_CP011236.1\|WP_010930561.1\|2111899_2112301_+\|MaoC-family-dehydratase	unknown	unknown	gnl\|CDD\|239534

Protein	Function_ID	Function_description	E-value
NZ_CP011236.1\|WP_003812456.1\|2130659_2131172_+\|Fe-S-protein-assembly-co-chaperone-HscB	gnl\|CDD\|235133	PRK03578, hscB, Fe-S protein assembly co-chaperone HscB.	2.55481e-79
NZ_CP011236.1\|WP_010930571.1\|2131301_2133164_+\|Fe-S-protein-assembly-chaperone-HscA	gnl\|CDD\|235360	PRK05183, hscA, chaperone protein HscA; Provisional.	0
NZ_CP011236.1\|WP_019247935.1\|2119047_2119779_+\|hypothetical-protein	gnl\|CDD\|270296	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family; contains the type 2 periplasmic binding fold. Bug27 binds non-carboxylated solute nicotinamide, in contrast to BugD (aspartic acid transporter) and BugE (glutamate transporter) which both bind aliphatic carboxylated ligands. The Bug (Bordetella uptake gene) protein family is a large family of periplasmic solute-binding (PBP) receptors present in a number of bacterial species, but mainly in proteobacteria. Bug proteins are the PBP components of the tripartite carboxylate transporters (TTT). Their expansive expansion in proteobacteria indicates a large functional diversity.	8.17828e-106
NZ_CP011236.1\|WP_003812458.1\|2130333_2130657_+\|iron-sulfur-cluster-assembly-protein-IscA	gnl\|CDD\|213674	TIGR02011, Protein_yfhF., iron-sulfur cluster assembly protein IscA. This model represents the IscA component of the ISC system for iron-sulfur cluster assembly. The ISC system consists of IscRASU, HscAB and an Isc-specific ferredoxin. IscA previously was believed to act as a scaffold and now is seen as an iron donor protein. This clade is limited to the proteobacteria. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	4.04388e-54
NZ_CP011236.1\|WP_003812463.1\|2128142_2128655_+\|Fe-S-cluster-assembly-transcriptional-regulator-IscR	gnl\|CDD\|273927	TIGR02010, Putative_HTH-type_transcriptional_regulator, iron-sulfur cluster assembly transcription factor IscR. This model describes IscR, an iron-sulfur binding transcription factor of the ISC iron-sulfur cluster assembly system. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other, Regulatory functions, DNA interactions].	1.00126e-77
NZ_CP011236.1\|WP_010930569.1\|2127435_2127927_+\|low-molecular-weight-phosphotyrosine-protein-phosphatase	gnl\|CDD\|319971	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase. Low molecular weight protein tyrosine phosphatases (LMW-PTP) are a family of small soluble single-domain enzymes that are characterized by a highly conserved active site motif (V/I)CXGNXCRS and share no sequence similarity with other types of protein tyrosine phosphatases (PTPs). LMW-PTPs play important roles in many biological processes and are widely distributed in prokaryotes and eukaryotes.	1.04407e-74
NZ_CP011236.1\|WP_010930562.1\|2112320_2113118_+\|enoyl-CoA-hydratase/isomerase-family-protein	gnl\|CDD\|223955	COG1024, CaiD, Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism].	2.89626e-63
NZ_CP011236.1\|WP_003812478.1\|2118371_2119013_+\|CoA-transferase-subunit-B	gnl\|CDD\|188219	TIGR02428, 3-oxoadipate_CoA-transferase_subunit_B, 3-oxoacid CoA-transferase, B subunit. Various members of this family are characterized as the B subunits of succinyl-CoA:3-ketoacid-CoA transferase (EC 2.8.3.5), beta-ketoadipate:succinyl-CoA transferase (EC 2.8.3.6), acetyl-CoA:acetoacetate CoA transferase (EC 2.8.3.8), and butyrate-acetoacetate CoA-transferase (EC 2.8.3.9). This represents a very distinct clade with strong sequence conservation within the larger family defined by pfam01144. The A subunit represents a different clade in pfam01144.	3.32577e-117
NZ_CP011236.1\|WP_019247244.1\|2123866_2125069_-\|aspartate/tyrosine/aromatic-aminotransferase	gnl\|CDD\|181731	PRK09257, PRK09257, aromatic amino acid transaminase.	0
NZ_CP011236.1\|WP_010930563.1\|2113542_2114700_+\|thiolase	gnl\|CDD\|180434	PRK06158, PRK06158, thiolase; Provisional.	0
NZ_CP011236.1\|WP_019247934.1\|2119796_2120009_+\|hypothetical-protein	gnl\|CDD\|270296	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family; contains the type 2 periplasmic binding fold. Bug27 binds non-carboxylated solute nicotinamide, in contrast to BugD (aspartic acid transporter) and BugE (glutamate transporter) which both bind aliphatic carboxylated ligands. The Bug (Bordetella uptake gene) protein family is a large family of periplasmic solute-binding (PBP) receptors present in a number of bacterial species, but mainly in proteobacteria. Bug proteins are the PBP components of the tripartite carboxylate transporters (TTT). Their expansive expansion in proteobacteria indicates a large functional diversity.	1.69368e-19
NZ_CP011236.1\|WP_010930565.1\|2117710_2118379_+\|3-oxoacid-CoA-transferase-subunit-A	gnl\|CDD\|131482	TIGR02429, 3-oxoadipate_CoA-transferase_subunit_A, 3-oxoacid CoA-transferase, A subunit. Various members of this family are characterized as the A subunits of succinyl-CoA:3-ketoacid-CoA transferase (EC 2.8.3.5), beta-ketoadipate:succinyl-CoA transferase (EC 2.8.3.6), acetyl-CoA:acetoacetate CoA transferase (EC 2.8.3.8), and butyrate-acetoacetate CoA-transferase (EC 2.8.3.9). This represents a very distinct clade with strong sequence conservation within the larger family defined by pfam01144. The B subunit represents a different clade in pfam01144, described by TIGR02428. The two are found in general as tandem genes and occasionally as a fusion.	1.07744e-141
NZ_CP011236.1\|WP_003812491.1\|2113114_2113546_+\|hypothetical-protein	gnl\|CDD\|224462	COG1545, COG1545, Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only].	1.42164e-21
NZ_CP011236.1\|WP_005012067.1\|2120579_2121530_+\|IS481-like-element-IS481-family-transposase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	8.66858e-23
NZ_CP011236.1\|WP_003812460.1\|2129921_2130332_+\|Fe-S-cluster-assembly-scaffold-IscU	gnl\|CDD\|183087	PRK11325, PRK11325, scaffold protein; Provisional.	5.84746e-99
NZ_CP011236.1\|WP_010930570.1\|2128672_2129884_+\|IscS-subfamily-cysteine-desulfurase	gnl\|CDD\|184450	PRK14012, PRK14012, IscS subfamily cysteine desulfurase.	0
NZ_CP011236.1\|WP_010930564.1\|2114721_2115498_+\|SDR-family-oxidoreductase	gnl\|CDD\|235546	PRK05653, fabG, 3-oxoacyl-ACP reductase FabG.	4.84544e-78
NZ_CP011236.1\|WP_010930566.1\|2123087_2123738_-\|transcriptional-repressor-LexA	gnl\|CDD\|234688	PRK00215, PRK00215, transcriptional repressor LexA.	1.25833e-105
NZ_CP011236.1\|WP_010930568.1\|2125146_2127183_+\|excinuclease-ABC-subunit-UvrB	gnl\|CDD\|235395	PRK05298, PRK05298, excinuclease ABC subunit UvrB.	0
NZ_CP011236.1\|WP_010930561.1\|2111899_2112301_+\|MaoC-family-dehydratase	gnl\|CDD\|239534	cd03450, NodN, NodN (nodulation factor N) contains a single hot dog fold similar to those of the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. Rhizobium and related species form nodules on the roots of their legume hosts, a symbiotic process that requires production of Nod factors, which are signal molecules involved in root hair deformation and meristematic cell division. The nodulation gene products, including NodN, are involved in producing the Nod factors, however the role played by NodN is unclear.	1.90882e-68

>NZ_CP011236.1|WP_005012067.1|2120579_2121530_+|IS481-like-element-IS481-family-transposase
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>NZ_CP011236.1|WP_019247934.1|2119796_2120009_+|hypothetical-protein
MGPAGIPADITAAWAKEIARVAALPDVSEKLATLGVESVSSTPQQFSAFVESEIRKWEKVVQDAHIPPVQ
>NZ_CP011236.1|WP_019247935.1|2119047_2119779_+|hypothetical-protein
MKTKIKIVTLALCAFSSAVFASSFPSKPINLIVPYPPGGAVDPIALLYAEKISQSWGVPVIVLNRPGAGTTIGLNQAARAEPDGYTVVLGTASITSNAPLYRSLPYDTLKDFTYLSMAGMIPLAITANPRTAVNSMDELVGQLKKKPGSLTYSSSGNGTIIHLGGELFKSLAGVDMVHVPYKGSGPSVMAGVAGEVDLTFDSVFLMDPQVKAGKLKYIAVASEKRLKSLPEVPAIGESILVIS
>NZ_CP011236.1|WP_003812478.1|2118371_2119013_+|CoA-transferase-subunit-B
MSKGWSNDEIAARIAVDLPEHAIVNLGIGLPILVANHIPEGKTIFFHSENGIIGLGPVPAPGQEDPDIVNAAKKHATLIAGASIVHHADSFSLIRGGRLDYSVLGGLQVSSGGDIANWKVPGQKGGGGVGGAMDLAVGARNVLVMMRHQDKTGASKLVKSCTFPLTAVSAVTRVYTELGIFECAGDAFIVRESAPGIGKDELLRKTEAALTFP
>NZ_CP011236.1|WP_010930565.1|2117710_2118379_+|3-oxoacid-CoA-transferase-subunit-A
MLNKTCESADEAVSVVESGATILISGFGDIGLPFELLHALARTSVKDLTIVSNNAGTGELGLSRLFRNRQVSRLIASFPSQPDSHHYFAAYQEGLVDLELVPQGTLAERIRAAGAGLAGFFTPTGYGTELAQGKECRMFKGKGYVFEEALPGDFAFIKAHVADAYGNFRYRRASRTFNPIMAMAARTTIAEAKQMVPVGSIDPDDVHTPGVFVDRIVEVRDE
>NZ_CP011236.1|WP_010930564.1|2114721_2115498_+|SDR-family-oxidoreductase
MQDKLLTLENRQVIVTGAGQGIGRALASAIAGLGGRVVAVDLNADALAALREALGHERCVTVAGNVADPSLAQQAVDAGVTAFGGVNGLVNNAGVTRTAMIDKMSISDWQQVIDVHLSGSFYFLQALGRHLLGRAKAGGDGAGAIVNISSDAGRRGTIGQINYGAAKAGVLGLTMCAAREWARYGIRTNTVGFGVVETPMTETIRGEKFRDTYLSQIPLGRWGEADEVVRPVCFLLSDADSYVTGQHLSVNGGYTIGL
>NZ_CP011236.1|WP_010930563.1|2113542_2114700_+|thiolase
MIQERFPRGKTAIVACATYGIGESPGLSSLDLAVRASVQALDSVGLTPADVDGLFIGLPDDFVSGLSFTEYLGISPRLTDNNRTGGSSFLTHAIHAALALEAGLCDVALIAYGSNQRSGAGKLVSSMRPSPYEGAYKLARPVGAYALAASRYAAQYGLQKEQLGAVALAARQWAQKNPEAYMRAPLTMDECLASRLVCDPFSVRDCCLVTDGAAAVVMVRADRARDLAARPAYLLGGAAAAWHKDITNMPDLTVTAASLSGPRAMAQAGVTPADIDVLELYDAFTLNTILFLEDLGFCAKGEGGAFVEDGRIAPGGALPVNTNGGGLSCVHPGMYGLFTMVEAAQQLAGAAGERQVAQARLALAHGNGGELSSQATLILGTEETI
>NZ_CP011236.1|WP_003812491.1|2113114_2113546_+|hypothetical-protein
MTEHPQAASALLPQQEYFAHLADGRFMIQRSRSSGEYVFYPRVAAPRTGAQDLEWVAASGRGTVYATTVMRVRPPAAPYNVCLVELEEGPRMMSRVEGIGPEDVQVGMAVRARIIRDDAGEPLVVFEPAGPSDAGIGQGRAAQ
>NZ_CP011236.1|WP_010930562.1|2112320_2113118_+|enoyl-CoA-hydratase/isomerase-family-protein
MSVLEISRVGACAVLTLNRPAARNALDMDLRNALAKALPEIRDDATVRAVVLTGAGGHFCAGGDIRAIAAGQGNADVFEGRNRILSMQRWFDGLVDLEKPVIAAVDGVAFGAGLSLALAADFVLASPRATFCAVFARLGYVPDLGGMYLLPRAVGLARAKALAFSARVVGAPEALEMGIAHQLVDDRPVLDAALELAGRFEQAPAGALGIVKSVMNHAFESDRRTVYMQEALAQALCRESAFHQEAARRFLDKQAPLYQWPQEQQ
>NZ_CP011236.1|WP_010930561.1|2111899_2112301_+|MaoC-family-dehydratase
MGQPIVVDQSAIDTFGDVVHDRQWIHVDPVRAAAESPFGTTIAHGLLTLSLITGWYHQLFEFPGRKLALNYGFDKVRFPAPVPSGSALVGSFRLARVDELGPDEARCLWEVDVRVAGAERPAMVAEWLMQLRY
>NZ_CP011236.1|WP_010930566.1|2123087_2123738_-|transcriptional-repressor-LexA
MATKLTERQQEILDLIRQTVARTGFPPTRAEIAQALGFRSPNAAEDHLKALARKGAIELTAGASRGIRLKVPDSATPSAQLTHPLLAQLVLPLVGRVAAGSPILASEHVEREVGVDPGLFAQTPDYLLKVRGMSMRDAGILEGDLLAVKRAAEARNGQIVVARLGDEVTVKRLQRQNGRIELLPENPDFAPIVVANTDEFALEGIAVGLIRTQPLH
>NZ_CP011236.1|WP_019247244.1|2123866_2125069_-|aspartate/tyrosine/aromatic-aminotransferase
MSTLFASVELAPRDPILGLNEQYNADTRPGKVNLGVGVYYDDEGRIPLLQAVRKAEVARIEAAAARGYLPIEGIAGYNKGAQALLLGADSPLAAEGRVLTAQALGGTGALKIGADFLRQLLPQSKVLISDPSWENHRALFERAGFPVETYAYYDAATHGLNFEAMLAALQAAPEQTIVVLHACCHNPTGVDPTPQQWEQIAAVVKARNLVPFLDIAYQGFGEGLEQDAAVVRMFAELDLTMFISSSFSKSFSLYGERVGALTVVAGSKDEAARVLSQLKRVIRTNYSNPPTHGGTVVSTVLNTPELFALWENELAGMRDRIRLMRKELVEKIKTQGVAQDFSFVLAQRGMFSYSGLTAAQVDRLREEHGIYAVSSGRICVAALNSRNIDAVAAGIAAVLK
>NZ_CP011236.1|WP_010930568.1|2125146_2127183_+|excinuclease-ABC-subunit-UvrB
MTAPGFVEFPDSPFHLYQPYPPAGDQPGAIDALTEGVSDGLMFQTLLGVTGSGKTYTMANMIARLGRPALVLAPNKTLAAQLYAEMREFFPRNAVEYFVSYYDYYQPEAYVPTRDLFIEKDSSINEHIEQMRLSATKSLLERRDTVIVGTVSCIYGIGNPGDYHAMVLILRTGDRISRREVLARLVAMQYTRNDADFTRGVFRVRCETIDIFPAESPELALRLTLFDDEIESLELFDPLTGRVRQKLPRFTVYPGSHYVTPRETVLRAIETIKEELRERLAQLIADGKLVEAQRLEQRTRFDLEMLQELGFCKGIENYSRHLSGAAPGEPPPTLIDYLPADALMFIDESHVTIGQLGGMYRGDRSRKETLVQYGFRLPSALDNRPLRLEEFEARMRQCVFVSATPAAYEQEHADNVVEQVVRPTGLVDPIVEVRPAHTQVDDLLGEIHKRAALQERVLVTTLTKRMAEDLTDFLSEHGVRVRYLHSDIDTVERVEIIRDLRLGVFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLNGRAILYADRITDSMRRAIDETERRRAKQIQHNTDHGITARGVSKAVRELIDGVVAPAGHDALESAVPAEVLTDEKAMAREIRRLEKLMMDHARNLEFEQAAAARDALNALKSRLLLDGVGWSG
>NZ_CP011236.1|WP_010930569.1|2127435_2127927_+|low-molecular-weight-phosphotyrosine-protein-phosphatase
MMTKVLFVCMGNICRSPSAEGVFRYLVNDAGMGDVVRVDSAGTHAFHIGEAPDARAQAAARKRGYDLTHCAARQVTADDFREFDLILAMDWDNLAALQQQCPKAYQHKLMLLMRFANEFEEATVPDPYYGGPEGFGKVLDYLEDACQGVLELVRKRATQYQAA
>NZ_CP011236.1|WP_003812463.1|2128142_2128655_+|Fe-S-cluster-assembly-transcriptional-regulator-IscR
MRLTTKGRFAVTAMIDLAMRQHSGPVTLAAISQRQNISLSYLEQLFGKLRRHELVDSVRGPGGGYSLARLARNVTVADIIFAVDEPLDATSCGGKRDCTSGNDGKPGKCMTHELWTTLNRKMVDYLDSVSLQDLVDQQRVRQLQEAANQAQGCSAVRVNRSTPVAANATA
>NZ_CP011236.1|WP_010930570.1|2128672_2129884_+|IscS-subfamily-cysteine-desulfurase
MSNRPIYLDYSATTPVDPSVVEKMIPWLYESFGNPASRSHAFGWEAEDAVEKAREEVAKLVNADPREIVWTSGATESDNLAIKGAANFYAERGKHIITVKTEHKAVLDTCRELERQGFEVTYLDVQDDGLLSLDAFKAALRPDTILVSVMMVNNEIGVIQDIAALGEICREKGIIFHVDAAQATGKVEIDLQKLKVDLMSFSAHKTYGPKGIGALYVRRKPRVRIEAQMHGGGHERGFRSGTLATHQIVGMGEAFRLAREEMGTENERVRMLRDRLLAGLTQIEEVYVNGSMEHRVPHNLNISFNYVEGESLIMAIKELAVSSGSACTSASLEPSYVLRALGRNDELAHSSIRFTLGRFTTEQEIDFTIELIKSRVGKLRDMSPLWEMAQEGIDLNSVQWAAH
>NZ_CP011236.1|WP_003812460.1|2129921_2130332_+|Fe-S-cluster-assembly-scaffold-IscU
MAYSSKVLDHYENPRNVGSFDKGDDSVGTGMVGAPACGDVMKLQIKVNEAGVIEDARFKTYGCGSAIASSSLVTEWVKGKTLDEAMNIRNTQIAEELALPPVKIHCSILAEDAIKAAVQDYKTKHGAETPEAVAAN
>NZ_CP011236.1|WP_003812458.1|2130333_2130657_+|iron-sulfur-cluster-assembly-protein-IscA
MAVTLTQSAANHVGRYLQKRGKGIGLRLGVRTTGCSGMAYKLEYVDEQAADDVVFDSFGVKVFIDPKSLAYLDGTELDYAREGLNEGFRFSNPNEKATCGCGESFTV
>NZ_CP011236.1|WP_003812456.1|2130659_2131172_+|Fe-S-protein-assembly-co-chaperone-HscB
MAADDHFSLFGLPTRFALDPVQLEQAWRAVAARVHPDRYATASAAERRVAMQWAARANEAYRQLRDPMLRARYLCEQAGVDLQTESNTAMDPAFLMQQMEWREMLDDARRDPAAFAALRAELEQARLRMQQTLSELIDERGDYQQAGTKVREWMFVEKLAQELSAAQPMQ
>NZ_CP011236.1|WP_010930571.1|2131301_2133164_+|Fe-S-protein-assembly-chaperone-HscA
MALLQISEPGDSPAPHQRKLAVGIDLGTTNSLVAAVRSSVPEVLADAQGQVLLPSAVRYLDGGAVRIGREALLEQARDPLNTIVSVKRFMGRSAADAAASGAPYEFVDAPGMVRLRTVQGDLSPVEVSAQILAVLRQRAEDVLGDDLVGAVITVPAYFDDAQRQATRDAARLAGLNVLRLLNEPTAAAIAYGLDQAAEGIYAVYDLGGGTFDISILRLTQGVFEVIATGGDTALGGDDFDSAIVAHACAGEDVAALPVADRRALLVAARAAREALTDQAQAPFEVTLRDGRAIQATLTRAQFEQLAEPLVGRTLDSARRALRDAGLAVGDVRGVVMVGGATRMPVVRQQVGALFGTEPLTNLDPDQVVALGAALQANLLAGNRALGEDWLLLDVIPLSLGLETMGGLVERIIPRNSTIPVARAQEFTTFKDGQTAMSVHVVQGERDLVSDCRSLARFELRGIPPMVAGAARIRVTFQVDADGLLSVTAREQSTGVEAAVAVKPSYGLSDDEIARMLADSVTQADSDARARMLREQQVEARQLVESVGAALAADGDLLDPAERATVDQRLQAAAQAQSLDDVEAVRAAVQALSDATEEFAARRMDRSIRSALAGRKLDELA

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Crispr_ID: NZ_CP011236_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011236_4

2909687-2909803

Orphan

Consensus_repeat	Method
TTTTTTGCCTTGGGGCGGCCCGGCGGCAAAAAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP011236_4

>merge|NZ_CP011236|4|2909687-2909803|CRISPRCasFinder
TTTTTTGCCTTGGGGCGGCCCGGCGGCAAAAAAAGGCCCCCACGCTGCGCCCGCTGTGCGGGCTTGCTGCCCCCCAAGGGGGTTTTTTTGCCTTGGGGCGGCCCGGCGGCAAAAAAA

>NZ_CP011236|4|4|2909687-2909803|CRISPRCasFinder
TTTTTTGCCTTGGGGCGGCCCGGCGGCAAAAAAA	GGCCCCCACGCTGCGCCCGCTGTGCGGGCTTGCTGCCCCCCAAGGGGGT
TTTTTTGCCTTGGGGCGGCCCGGCGGCAAAAAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011236.1\|WP_010930194.1\|2909914_2913145_-\|autotransporter-SphB3	unknown	unknown	gnl\|CDD\|377133
NZ_CP011236.1\|WP_010926448.1\|2919027_2920132_+\|peptide-chain-release-factor-2	unknown	unknown	gnl\|CDD\|234799
NZ_CP011236.1\|WP_010930189.1\|2922486_2922789_+\|membrane-protein	unknown	unknown	unknown
NZ_CP011236.1\|WP_010926447.1\|2920161_2920917_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|180796
NZ_CP011236.1\|WP_010930190.1\|2920923_2922444_+\|lysine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234778
NZ_CP011236.1\|WP_010930192.1\|2916265_2917243_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226706
NZ_CP011236.1\|WP_019248398.1\|2900588_2901557_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NZ_CP011236.1\|WP_010930201.1\|2892026_2894723_+\|alpha-ketoglutarate-dehydrogenase	unknown	unknown	gnl\|CDD\|237267
NZ_CP011236.1\|WP_003816844.1\|2899673_2900519_-\|PHP-domain-containing-protein	unknown	unknown	gnl\|CDD\|223686
NZ_CP011236.1\|WP_010930198.1\|2898054_2899005_+\|IS481-like-element-IS481-family-transposase	unknown	unknown	gnl\|CDD\|366234
NZ_CP011236.1\|WP_010928340.1\|2913426_2914254_-\|TatD-family-hydrolase	unknown	unknown	gnl\|CDD\|238635
NZ_CP011236.1\|WP_003812405.1\|2899051_2899606_-\|transcription-elongation-factor-GreB	unknown	unknown	gnl\|CDD\|179345
NZ_CP011236.1\|WP_010930196.1\|2905252_2909179_-\|inverse-autotransporter-beta-barrel-domain-containing-protein	unknown	unknown	gnl\|CDD\|378762
NZ_CP011236.1\|WP_003812422.1\|2914287_2914983_-\|lipoprotein-releasing-ABC-transporter-ATP-binding-protein-LolD	unknown	unknown	gnl\|CDD\|213222
NZ_CP011236.1\|WP_010930200.1\|2894877_2897160_+\|NADP-dependent-malic-enzyme	unknown	unknown	gnl\|CDD\|235976
NZ_CP011236.1\|WP_023853221.1\|2901556_2903353_-\|IS481-family-transposase	unknown	unknown	gnl\|CDD\|225212
NZ_CP011236.1\|WP_010930199.1\|2897323_2897956_+\|fimbrial-protein	unknown	unknown	gnl\|CDD\|339870
NZ_CP011236.1\|WP_010930191.1\|2917224_2918925_+\|single-stranded-DNA-specific-exonuclease-RecJ	unknown	unknown	gnl\|CDD\|182944
NZ_CP011236.1\|WP_010930202.1\|2891412_2891901_-\|Lrp/AsnC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224439
NZ_CP011236.1\|WP_019247537.1\|2914975_2916256_-\|lipoprotein-releasing-ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|274034

Protein	Function_ID	Function_description	E-value
NZ_CP011236.1\|WP_010930194.1\|2909914_2913145_-\|autotransporter-SphB3	gnl\|CDD\|377133	pfam03797, Autotransporter, Autotransporter beta-domain. Secretion of protein products occurs by a number of different pathways in bacteria. One of these pathways known as the type V pathway was first described for the IgA1 protease. The protein component that mediates secretion through the outer membrane is contained within the secreted protein itself, hence the proteins secreted in this way are called autotransporters. This family corresponds to the presumed integral membrane beta-barrel domain that transports the protein. This domain is found at the C-terminus of the proteins it occurs in. The N-terminus contains the variable passenger domain that is translocated across the membrane. Once the passenger domain is exported it is cleaved auto-catalytically in some proteins, in others a different protease is used and in some cases no cleavage occurs.	3.21051e-45
NZ_CP011236.1\|WP_010926448.1\|2919027_2920132_+\|peptide-chain-release-factor-2	gnl\|CDD\|234799	PRK00578, prfB, peptide chain release factor 2; Validated.	0
NZ_CP011236.1\|WP_010926447.1\|2920161_2920917_+\|SDR-family-oxidoreductase	gnl\|CDD\|180796	PRK07023, PRK07023, SDR family oxidoreductase.	5.47641e-103
NZ_CP011236.1\|WP_010930190.1\|2920923_2922444_+\|lysine--tRNA-ligase	gnl\|CDD\|234778	PRK00484, lysS, lysyl-tRNA synthetase; Reviewed.	0
NZ_CP011236.1\|WP_010930192.1\|2916265_2917243_+\|hypothetical-protein	gnl\|CDD\|226706	COG4255, COG4255, Uncharacterized protein conserved in bacteria [Function unknown].	1.08896e-20
NZ_CP011236.1\|WP_019248398.1\|2900588_2901557_-\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	2.0858e-13
NZ_CP011236.1\|WP_010930201.1\|2892026_2894723_+\|alpha-ketoglutarate-dehydrogenase	gnl\|CDD\|237267	PRK13012, PRK13012, 2-oxoacid dehydrogenase subunit E1; Provisional.	0
NZ_CP011236.1\|WP_003816844.1\|2899673_2900519_-\|PHP-domain-containing-protein	gnl\|CDD\|223686	COG0613, COG0613, Predicted metal-dependent phosphoesterases (PHP family) [General function prediction only].	1.79612e-72
NZ_CP011236.1\|WP_010930198.1\|2898054_2899005_+\|IS481-like-element-IS481-family-transposase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	7.71464e-23
NZ_CP011236.1\|WP_010928340.1\|2913426_2914254_-\|TatD-family-hydrolase	gnl\|CDD\|238635	cd01310, TatD_DNAse, TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.	1.42767e-89
NZ_CP011236.1\|WP_003812405.1\|2899051_2899606_-\|transcription-elongation-factor-GreB	gnl\|CDD\|179345	PRK01885, greB, transcription elongation factor GreB; Reviewed.	4.04513e-99
NZ_CP011236.1\|WP_010930196.1\|2905252_2909179_-\|inverse-autotransporter-beta-barrel-domain-containing-protein	gnl\|CDD\|378762	pfam11924, IAT_beta, Inverse autotransporter, beta-domain. This is a family of beta-barrel porin-like outer membrane proteins from enteropathogenic Gram-negative bacteria. Intimins and invasins are virulence factors produced by pathogenic Gram-negative bacteria. They carry C-terminal extracellular passenger domains that are involved in adhesion to host cells and N-terminal beta domains that are embedded in the outer membrane. This family represents the beta-barrel porin-like domain in the outer membrane that can be found in intimins, invasins and some inverse autotransporters.	8.97198e-85
NZ_CP011236.1\|WP_003812422.1\|2914287_2914983_-\|lipoprotein-releasing-ABC-transporter-ATP-binding-protein-LolD	gnl\|CDD\|213222	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein. This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.	2.7791e-114
NZ_CP011236.1\|WP_010930200.1\|2894877_2897160_+\|NADP-dependent-malic-enzyme	gnl\|CDD\|235976	PRK07232, PRK07232, bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed.	0
NZ_CP011236.1\|WP_023853221.1\|2901556_2903353_-\|IS481-family-transposase	gnl\|CDD\|225212	COG2333, ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only].	2.40146e-57
NZ_CP011236.1\|WP_010930199.1\|2897323_2897956_+\|fimbrial-protein	gnl\|CDD\|339870	pfam16970, FimA, Type-1 fimbrial protein, A. FimA is a family of Gram-negative fimbrial component A proteins that form part of the pili. There are usually up to 1000 copies of this subunit in one pilus that form a helically wound rod onto which the tip fibrillum (FimF.FimG, FimH) is attached. Pilus subunits are translocated from the cytoplasm to the periplasm via the general secretory pathway SecYEG.	3.93152e-22
NZ_CP011236.1\|WP_010930191.1\|2917224_2918925_+\|single-stranded-DNA-specific-exonuclease-RecJ	gnl\|CDD\|182944	PRK11070, PRK11070, single-stranded-DNA-specific exonuclease RecJ.	0
NZ_CP011236.1\|WP_010930202.1\|2891412_2891901_-\|Lrp/AsnC-family-transcriptional-regulator	gnl\|CDD\|224439	COG1522, Lrp, Transcriptional regulators [Transcription].	2.95114e-53
NZ_CP011236.1\|WP_019247537.1\|2914975_2916256_-\|lipoprotein-releasing-ABC-transporter-permease-subunit	gnl\|CDD\|274034	TIGR02212, releasing_system_transmembrane_protein_lolC., lipoprotein releasing system, transmembrane protein, LolC/E family. This model describes the LolC protein, and its paralog LolE found in some species. These proteins are homologous to permease proteins of ABC transporters. In some species, two paralogs occur, designated LolC and LolE. In others, a single form is found and tends to be designated LolC. [Protein fate, Protein and peptide secretion and trafficking].	6.22467e-159

>NZ_CP011236.1|WP_010930196.1|2905252_2909179_-|inverse-autotransporter-beta-barrel-domain-containing-protein
MNKNIYRVVWSLVRGAWVVAGEWARAGRKSSSPRRQNRQRARRGVAAMVGGSILAQALLPLSALAQGAPTLRPARVAQEEAGQDAAWTRKLAAQAESLARRQAERQPGARVDGDYLKREAQAQVNDVLRDGVNLARESGLPFLRNLQGGLSHDFESGRTSLQLNTIDEVYRAGRNTGLLQLGAHNQNDRPTANAGAVYRREVNDALMVGANGFLDYEFGKQHLRGSVGLEVIAPEFSLYGNVYAPLSDWKGAKRNNRREEKPASGMDVGVGYRPAFAPGLSLSATHFRWNGAEVDYFDNGRTQAGAKGFKVGVEYRPVSLVSVGLEQTKVIGGGRETRMQLGLNINLSEPLSKQLRRDASGTPAFSPDARRHALVERENRIVLNTRRKEIILPLVVSKVSTLQADGRVTVIGATQPFATVTVRMPDGMTGTATADASGRFAYTSAGDQPSGVLALRARNAEGDSSREVTYRYVDEVVLGDLQVAVMALVPLPADRALEVRGKTEPKVDVKVSFSNGESVLAKADAKGLFTVRSTRKVTQGKVLVQATHPQTRKEARAVADYLPPATLAPTIDAVTAQADTGRVTVTGQAEPGAQVDVHFPDGTAKTVDAGADGAYAATSDGDMVSGDIHAQATDKAGNQSPEATRHYGDTTDITPPAAPTIANVATDATSGRVTAAGMAEPGANVTVNFPDGTRKTVVAGGDGAYTATSDRDMVSGDIRVQATDKAGNQSPEATRAYADAVDRTAPEVPTVTHVATDAKSGRITVTGMAEPGANVTVNFPDGTRKTAVAGGDGAYTATSDGDMVSGDIRVQATDKAGNRSPEATRAYADTVDTTPPAVPTITDVTTDATNGRITVTGVAEPGANVTVDFPDGTRKTVVAGGDGAYTATSDRDMASGDVRVQAIDKGGNRSPEATRAYADTVDKTAPAAPTITNVTTDAASGRITVTGMAEPGANVAVNFPDGTRKTVVADGAGAYAADSDGDMVAGDIHVQATDKAGNRSPEGTRAYVDTVDKTPSAAPTIVRVTTDRSSGVVTVAGTADPDNDVTVQFPDGGRKTVKAGKDGSYSVTSDNDIFSGIIQVSARNPAGNASPEVRQDYRDEFVPANAITNIETNSRNGIVTVSGKTSPDATVVVSFPGGDEARTRAKGDGTFSVSSPMDIPRGVVSLSTEVNGVQTVVATRTYEDKFTKGGLDFTAFLPYTPKFNGVSTSDTSAVLLSIPRYFYSGGAPVAKIMPPEADGSEFAKRAAAAMRAQVTPGRDSSEYDVRVSWPAGTFTPADVGQRADLAVKVFDKGTGKYMLLLAPVNFPY
>NZ_CP011236.1|WP_023853221.1|2901556_2903353_-|IS481-family-transposase
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHSYWTLTALDVGQGGAVVLETARHVLLFDTGPRHGDASDAGERVIAPFLWARGYRHIDTLVVSHADLDHTGGLRSVLAALPVGQAYASFDLAAWLARQARVRPDGWRAAPRMPPATRGCEAGVQWRVDGVRLRFVYPPSLAAPLPWRSSNARSCVLLVEGVGHRALLTGDVGLVQEAAFAAALPPVDLVMAPHHGSAMSSGSLLTAATRPAHAIAQAGYLNRFGHPAASAINRWRRAGAAVWRTDLDGAVRADSTPRGLFASGQRQVARRYWRDSRAGPDAPLR
>NZ_CP011236.1|WP_019248398.1|2900588_2901557_-|alpha/beta-hydrolase
MGHRRPSGPRRGDIMQEPRLDFVTCASPTGFHRMAYWEWGDPLNDRVLVCVHGLTRTGRDFDHLARRLAGQWRVVCPDVAGRGKSDWLSNPALYAVPQYVSDMATLIARVWPATLAWVGTSMGGLIGLGLAGAATMMRLARAMRPRPDGLPAQADDLRLHRLVLNDVGPRLNVEVLQRIAGNVAAQDSYSTFEAAVAAMRQISTTFGPHTDAQWDELARHIYVRQGGGWVRHFDPALAVPLGAQVAQAFEAGERILWQAYDSLDCPVLIVRGQDSDLLSAATAGEMLARNPRARLHEVPGVGHAPTLMTPEQIEPIARFLQE
>NZ_CP011236.1|WP_003816844.1|2899673_2900519_-|PHP-domain-containing-protein
MNIAAPNVDLHCHSTVSDGSMPPAAVARRAHANGVDVWALTDHDEIGGVAEAAQAAAALGMRFVAGVEISVTWAGLTVHIVGLRVDPANEALVQGLRDTRAGRAARAVQIGERLAGLGMPGAYEGALPFAGNPELISRTHFARFLVEAGYCPDVQTVFNKYLGDDCPGHVPMQWASLAEAVGWIRGAGGCAVIAHPGRYKYSPMQFDALYDEFLQLGGTGIEVVTGSHTSEEARRYAEVARRHGFLASRGSDFHSPTESRVDLGRLPPLPPDLKPVWHDWF
>NZ_CP011236.1|WP_003812405.1|2899051_2899606_-|transcription-elongation-factor-GreB
MNKAFVKESDRDDEDDLPEAQALPAGTRNYMTPQGYARLRDELSHLMNVERPSVVQVVSWAASNGDRSENGDYLYGKKRLREIDRRMRFLTKRLDIAEVVDPAAQPNRDQVFFGATVLYMDRAGEERTVTIVGVDEAEPLAGKISWISPVARALTKAHEGDTVTLRTPGGVEELEILEVRYPDA
>NZ_CP011236.1|WP_010930198.1|2898054_2899005_+|IS481-like-element-IS481-family-transposase
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLAGLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>NZ_CP011236.1|WP_010930199.1|2897323_2897956_+|fimbrial-protein
MLPMQIPFQRALRLCLRAALAAIASAAHADDGTIVITGTITDTTCVIEDPSGPNHTKVVQLPKISKNALKANGDQAGRTPFIIKLKDCPSSLGNGVKAYFEPGPTTDYSTGDLRAYKMVYATNPQTQLSNITAATEAQGVQVRISNLNDSKITMGANEATQQAAGFDPEVQTGGTSRTVTMRYLASYVKKNGDVEASAITTYVGFSVVYP
>NZ_CP011236.1|WP_010930200.1|2894877_2897160_+|NADP-dependent-malic-enzyme
MDENLTKLALDYHAYPTPGKISVTPTKTLANQDDLSLAYSPGVAAACMAIFDQGNDAASKYTSRSNLVGVITNGTAVLGLGNIGSLAAKPVMEGKGCLFKKFAGIDVFDIELAENDPDKLVDIIAALEPTLGGVNLEDIKAPECFYIEKKLRERMNIPVFHDDQHGTAIISSAAILNGLKVVGKDIGQVKLACSGAGAAAIACLDLLVHLGIKREHIYVVDSRGVIWEGRDENMEPNKRRYAQKTEARTLADVVNGADVFLGCSTAGVLTPEMVKTMAAQPLILALANPEPEIRPELAKAARPDCIVATGRSDYPNQVNNVLCFPFIFRGALDAGATRITEEMKLACVKAIAELAQAEQNDEVARAYAGQELSFGPDYIIPKPFDPRLIVQIAPAVAQAAADSGVATRPIEDIEAYRQKLMGFVYHSGQLMRPLFQQAKQAPKRVVYADGEDERVLRAVQTVIDEKLAEPILVGRPSVIEMRIKKFGLRMVPGQNVEIVDPEDDSRFNDTWNGYYQLRGREGVTPAIAKAMIRKHNTLIGAMLLRRGDADALLCGVASKYDNQLKYVEEVIGRKPGQTYGALNVLMLPNQTLFVTDTHVNENPSADEIANITIQAAEEMLRFGVMPKIALLSHSNFGSRPTDSSRKMAHARKLVAERAPHLEVDGEMHADAALSESIRLQAYPDSTLKGRANLLVMPNLDTGNITYNMLKMTGSNGIAMGPILLGSARPVHILTTSATVRRIVNMTALAVVDAQQEAAEG
>NZ_CP011236.1|WP_010930201.1|2892026_2894723_+|alpha-ketoglutarate-dehydrogenase
MCNAQAGATPPQIPDPDPVETAEWCEALDSLTQAGGPERAAYVLQQLLARATALGVRAPGITRTAYLNTIAADQEPPFPGNLSLEERIASINRWNALAMVVRANQAHGELGGHIASYASAADLFEVGFNHFFRAPAPGFGGDLVYMQPHSAPGIYARAYLEGFLNDVDLAHFRQEITAGAQGLRGLSSYPHPWLMPDFWQFPTGSMGIGPINAIYQARFMRYLEHRSLAMPSDRKVWGIFGDGEMDEPESIAALTLAARERLDNLVFVINCNLQRLDGPVRGNGRIIDELETLYAGAGWNVIKLVWGGDWDALLRRDPDGVLAGTFSHTVDGQFQTFAANDGAYNRQHFFGQDPRLSALVADWSDEAIDRLRRGGHDMVKIHAAYHRATHHRGQPTVILAQTKKGFGMGTAGQGKMTTHQQKKLDDEALLAFRDRFALPISDADCLALKFYKPAEDSAELRYLESRRAALGGYLPRRRTEAPRLAPPPVADWARFALQAAGKEMSSTMAIVRMLTALLKDPQLGPRIVPIVADEARTFGMANLFRQVGIYSAQGQLYEPEDIGSVLAYREARDGQILEEGITEAGAISSWTAAGTSYSVNGLPMLPFYIYYSMFGFQRIGDLIWAAADQRTRGFLIGATSGRTTLGGEGLQHQDGYSHLAAAAVPNCRAYDPAYAYEVAVLVEHGMQRMLDEQCDEFYYLTVTNENLAQPDMPEGEETRTGILRGMHRVRAADATPQVRLLGAGPMLDEAMRAAQLLRDEHGLDAEVWSVTSFSELARGGRGAERAQALGLPCPDGNWLAQCLGDQATPVVAVSDYVRAVPEQIRAWVPGPYRVLGTDGFGHSDTRARLRDFFEVGAPWIVLHALDLLAREDSAWQPALQARREQLQAATRNVPSWQS
>NZ_CP011236.1|WP_010930202.1|2891412_2891901_-|Lrp/AsnC-family-transcriptional-regulator
MPPHALDAIDRRILDLLQTDASLTNVELARRVHLSPSPCLARVKALEAAGIIRGYVALADPAQLGLNLNVFIQVSLEKQVESELERFQGAMADCPEVMECYLMTGDADYLLRVVVADMPGLERFIVNRLSRIPGVKNIRSGFALKQVKYQTALPLRQGSGPQ
>NZ_CP011236.1|WP_010930194.1|2909914_2913145_-|autotransporter-SphB3
MAQASARGMGLRITSLAAALLGVYGAAGAAENRLECIGACPPGQPVAGAHYSGTNLSANREWVVYGEGSNAVFTLQGGSVTASGGLMGAVNAADGARVYLNQVSVRTDAGNGWEAPGVRAEYGALVNVRGGSIATVGGGSYGVQSLDSGTMIELNGTDIRTTDAYSDGLRAEFGGSIRAVGLTINTTGEHAVGAMGADDGTIALRDSRITTSGVDAYGLGTESQVLSPGGVLQVSNTAIQTSGKNAHGVYLQGGSSLNMSGGSIRTTGSGAAGLRVSNGSSVALNGVEVVASGPSLLSTLSATRQQSIVVGAGSNLTRNDGRLLLVRRVAGGELGQVTLTLKSGSYAAGNIENLAADGSRESSALTIVDVQSGAQWAGLVIDDTTAIVNGSQSGQHSGFSTAGDMVLEGGSAPVTFTGVSNIGGSSSLGAGSQTTFGGATTIGQSLAVLPGGSVAFNGPLTIGESVTEGQGTALSFNAPAIIGANVQGAGGAAFTFSGPAQVGGSVQGLDGASFRFSTSAPTAIAGGLSLAGGSSLGGGSPTTPIVVIGGADAVSGAILGGNLDIGGALRMTGASLAPGNSIGTVTVGSVGALSGSTYLAEVNAKGQSDLLVVRSGNVDLAGVSLVVGQENGTGGYVLNHDYTIIKTEAGKIVGEFAAASLDESLASTLVKLDPVKYGAQATQVSLSPDADKLAAARAGLIRNQSAVLDGALSVAGRNASADAVMLMSDTGQRADALDQLSGEVHGSAVSALYSNTQLLNRTVARRMSANLGAGLLAGAPTAQAAGPAAASAMPGTAAYPLWADVVDNWSSFDAKDNAAKAKSNTAGLFIGGDAAVGAGWRVGGALGFTDGRIKADAVDSRSDVTSYTAALYGGNSWAAGKGKLNFLAGVGYTHHDIDSRRSVDVGGAQTLKADYKANTTQLFAELGYQVPVGASSSVEPYAGLAWFNNHSDSFDEDGGPAALHGSGQTDQITTFTLGLRGNTALQLGATETRLSAGLGWRHANGDVDATRKLAFIQGGGTAFTVAGSPVAREAAVLDLAAEVDVGRNAALGLAYGGQFGNGNKENTGSLYLKVRF
>NZ_CP011236.1|WP_010928340.1|2913426_2914254_-|TatD-family-hydrolase
MLIDTHCHLDAAEFDADRMAVARAAREAGVQAIVIPAVERANFATVRQLAHAVDSGAYALGIHPLYVARARDEDLDSLRRAIESALPDPRFVAIGEIGLDFFVAEIASGAPRERQERFYAAQLDLAAEYGLPVLLHVRRSQDILLKHLRRRPGVPGGIAHAFNGSAQQAGAFVEQGFALGLGGAMTYPRALQIRRHAADIGLDHLVLETDAPDIPPAWLYEPERRNTPGQLPRIAAELAALRGQAVADVARATTTTALRVLPRLGALLQDRAATP
>NZ_CP011236.1|WP_003812422.1|2914287_2914983_-|lipoprotein-releasing-ABC-transporter-ATP-binding-protein-LolD
MTEPNDTGPALQAEHLGKVYDEGPARIEVLSDVSLSVARGEMVAIVGASGSGKSTLLHILGLLDVPSSGTVSVDGVPAAGLSEKRKSALRNRSLGFVYQFHHLLPEFSALDNVAMPLIVRRENRDRARAQAREVLELVGLAAREEHFPGQLSGGERQRVALARALVTRPACVLADEPTGNLDRHTAHNMFELLTRVNRESGTAFVIVTHDPELAARADRQLHMENGRLQPD
>NZ_CP011236.1|WP_019247537.1|2914975_2916256_-|lipoprotein-releasing-ABC-transporter-permease-subunit
MLKIPYELWIGARYAGMARIRQRRGCRDRFISFIAATSMAGIALGVAALIVVLSVMNGFQKEVRDRMLSVLPHIELYIPGAAPERVLQQWRQFAQAARANPEVKGEAPFVAAQGMLVRGQALRGVQVRGIDPATEGNVSDIPRQMVSGKLSDLVAGGFGAVLGSDLADGLGVKTGDTVLMLAPQGSISPAGFAPRMRQFTVVGIFSSGHYEYDSTLVFIDDEDAAKVFRESGTAGVRLRVADMQRAPEVAAELTKVLPPYVMAADWSRNNRTWFAAVQTEKRMMFLILALIVAVAAFNLLSSLVMAVKDKQSDIAILRTLGAGPGEVARIFLVQGALIGVVGTLLGVAGGIAIAYNVDVIVPFIERLLGVQFLPREVYFISALPSDPQADDIITIGLTSLVLSLLATLYPSWRASRLQPAQVLRHD
>NZ_CP011236.1|WP_010930192.1|2916265_2917243_+|hypothetical-protein
MALTGTRTTIAAMLIVIPGALPAAAVAPELARLLPQHAPTLHGWLQAASARVQAFDAARQGCTPFEGWQLEQAGYQPQPGLPLGAGLGPLRAAGGTPGQPVWLADLAHLMLGADQAALLDPALLDLRADESAQLFEAAAPLFADSGFGATPIDAARWRLTLPAGMAPQTASPAAVAGQRLRAWWTQDVAMRPWRRLLNEIQMVWYEHPVNEARAARGAAPINALWLYGGATPWPAGAPAPARVCDELAATQRAGDWAAWLDALAMLDAAQLAPLAGPHGRPVQPLQLLLLGDDRRAALTLKPRAGLARWLPAPKHNWNAWWSRPV
>NZ_CP011236.1|WP_010930191.1|2917224_2918925_+|single-stranded-DNA-specific-exonuclease-RecJ
MVSPRLIIRTADLQACQHLEAAGIHPLLSRLWAARGVIHPEQTRMAWPALLPPDRLTHSAHAAAVLADAIEQGKRLLIVADYDCDGATACAVGLRALSAMGADVDFLVPNRFETGYGLSPAVVELACRHRRGKPDIIITVDNGIASVDGVAAANAAGIGVVITDHHLPGDTLPEALAIVNPNQPGCGFGSKHLAGVGVIFYMMLALRAELRRRGVYAPDGGPRLDALSDLVALGTVADVVKLDANNRLLVTQGLQRMRAGRMQPGVRALFAVAGREPRTASGFDLGFALGPRINAAGRLADMSLGIACLTTDDEAQTLEMARELDNINRERRTIEAEMRDQALAAMEAPDAAAGATVCVFDPGWHQGVVGLVASRLKEKFWRPTLAFAPAGEDELRGSGRSIPDVHLRDALDLVSKRHPGLIRKFGGHAMAAGLTLGSGDFAAFAPAFDAAVRELTGRDRFEPLLETDGSLESGYANAEVAGLLQQQVWGAGFAAPLFLDEFTVRSQRLVGGKHLKLALERGHQRFDAIWFGHDQSLPERIQAAYRLEQNIWNGMVSVQLVIEHAA
>NZ_CP011236.1|WP_010926448.1|2919027_2920132_+|peptide-chain-release-factor-2
MEAERQNQLVARLEDYAEREQALRRYLDYDAKSERLQVVNAELEDPAIWNDPKHAQDLGREKKSLEDVVETLTELGSGLADSCELVELALADSDDATLEAIEHDADRFQEKLETLEFRRMFANPADPLNCFVDIQAGAGGTEAQDWASMLLRQYLKYAERKGFKAEILEESEGDVAGLKSATIKIEGEYAFGYLRTETGVHRLVRKSPFDSSGGRHTSFASVFVYPEVDESFEVEVNPADLRIDTYRASGAGGQHINKTDSAVRITHAPSGIVVQCQNDRSQHRNRAEAMQMLKSKLYELEMRNRMTEQQKLEDSKTDVGWGHQIRSYVLDQSRIKDLRTNVEISNTQKVLDGDLDPFIQASLKQGV
>NZ_CP011236.1|WP_010926447.1|2920161_2920917_+|SDR-family-oxidoreductase
MTDTVAILTGASRGLGAALARGLLAPGTRLITLARRADPDLEAAARTRGASLEQVQVDLSDPAAAGAAAKRLCAALPRDARRYLLINNAGTVSPVAQAAGLTDGAAIAGALNLNVTAVVLLTARFVAALQGLPADRRVLNISSGAGRNPNAGWGVYCAAKAALDMYSRVLKQEQGQDGVRVVALAPGIVDTDMQGAIRASDPADFPALERFREFHATGKLSAPADVAARILAYLDRDDFGTTEIDDIRNYQ
>NZ_CP011236.1|WP_010930190.1|2920923_2922444_+|lysine--tRNA-ligase
MTDQSPAPTAQDENRLIAERRAKLARLRETGVAFPNNFVPDAHAADLHARYDGLDQEALTAAAVTVKVAGRMMLKRVMGKASFATLQDGSGRIQIYLERGTLGEEAYAAFKQWDIGDIIAIEGPVFKTNKGELSVHANSARLLSKSLRPLPDKFHGVADQELRYRQRYVDLIMTDATRRTFEARSKAVGGIRQAMLNAGFLEVETPMLHPIPGGAAAKPFVTHHNALDMQMFLRIAPELYLKRLIVGGFERVFEINRNFRNEGVSPRHNPEFTMMEFYAAYADYRWLMDFTEDLIRQAAIAATGSAVLSYQDRELDLSQPFDRLTICEAILKYAEGYTQAQLDDPAFVRAELRKLGANVEGPPLARAGLGALQLALFEETAEAKLWRPTYIIDYPVEVSPLARASDTRDGITERFELFITGREIANGFSELNDPEDQAERFRAQVEAKDAGDEEAMYFDADYIRALEYGMPPTGGCGIGIDRLVMLLTDSPSIRDVILFPHLRRED
>NZ_CP011236.1|WP_010930189.1|2922486_2922789_+|membrane-protein
MAALAYLLLSRRARPAAAPRPLRALPAGRRRMPLYLGVAAVLALAGALLSAFLLVTAMAGGSGGGYRGQADFLQQVAIVLLAIGVVCAIAALVSFFRQRG

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Crispr_ID: NZ_CP011236_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011236_5

3622360-3622453

Orphan

Consensus_repeat	Method
GTGCCTGTCCCGGCGGGGACAGGCAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP011236_5

>merge|NZ_CP011236|5|3622360-3622453|CRISPRCasFinder
GTGCCTGTCCCGGCGGGGACAGGCACGCCCGCACAGCGGGCGCAGCGTGGGGGTTTTCCTGGGCCCGGGTGCCTGTCCCGGCGGGGACAGGCAC

>NZ_CP011236|5|5|3622360-3622453|CRISPRCasFinder
GTGCCTGTCCCGGCGGGGACAGGCAC	GCCCGCACAGCGGGCGCAGCGTGGGGGTTTTCCTGGGCCCGG
GTGCCTGTCCCGGCGGGGACAGGCAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011236.1\|WP_010929933.1\|3624262_3625210_-\|dihydrodipicolinate-synthase-family-protein	unknown	unknown	gnl\|CDD\|188630
NZ_CP011236.1\|WP_010929932.1\|3625416_3626307_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176107
NZ_CP011236.1\|WP_010929791.1\|3614490_3615276_-\|crotonase/enoyl-CoA-hydratase-family-protein	unknown	unknown	gnl\|CDD\|181723
NZ_CP011236.1\|WP_010929789.1\|3617562_3618081_+\|MgtC/SapB-family-protein	unknown	unknown	gnl\|CDD\|224204
NZ_CP011236.1\|WP_010929577.1\|3623213_3624164_-\|IS481-like-element-IS481-family-transposase	unknown	unknown	gnl\|CDD\|366234
NZ_CP011236.1\|WP_003814685.1\|3613452_3614424_-\|tripartite-tricarboxylate-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270234
NZ_CP011236.1\|WP_010929929.1\|3628468_3629629_-\|acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|173849
NZ_CP011236.1\|WP_003814701.1\|3621802_3622273_+\|universal-stress-protein	unknown	unknown	gnl\|CDD\|366180
NZ_CP011236.1\|WP_003814694.1\|3616696_3617452_-\|TerC-family-protein	unknown	unknown	gnl\|CDD\|223930
NZ_CP011236.1\|WP_010929788.1\|3619869_3621270_+\|PLP-dependent-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|224089
NZ_CP011236.1\|WP_003820700.1\|3621369_3621714_+\|TIGR01244-family-phosphatase	unknown	unknown	gnl\|CDD\|225984
NZ_CP011236.1\|WP_003814691.1\|3615268_3616501_-\|CoA-transferase	unknown	unknown	gnl\|CDD\|367110
NZ_CP011236.1\|WP_019247419.1\|3611166_3612339_-\|acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|173841
NZ_CP011236.1\|WP_003814681.1\|3612464_3613442_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176106
NZ_CP011236.1\|WP_010929930.1\|3627459_3628431_-\|tripartite-tricarboxylate-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270296
NZ_CP011236.1\|WP_019247421.1\|3622683_3623082_+\|GTP-binding-protein	unknown	unknown	gnl\|CDD\|234569
NZ_CP011236.1\|WP_003815550.1\|3629639_3630032_-\|MaoC-family-dehydratase	unknown	unknown	gnl\|CDD\|239525
NZ_CP011236.1\|WP_003815546.1\|3630420_3630822_-\|Zn-ribbon-domain-containing-OB-fold-protein	unknown	unknown	gnl\|CDD\|224462
NZ_CP011236.1\|WP_010929931.1\|3626303_3627452_-\|CoA-transferase	unknown	unknown	gnl\|CDD\|367110
NZ_CP011236.1\|WP_010929928.1\|3630028_3630424_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP011236.1\|WP_010929933.1\|3624262_3625210_-\|dihydrodipicolinate-synthase-family-protein	gnl\|CDD\|188630	cd00408, DHDPS-like, Dihydrodipicolinate synthase family. Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stabilizes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.	1.66209e-66
NZ_CP011236.1\|WP_010929932.1\|3625416_3626307_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176107	cd08415, PBP2_LysR_opines_like, The C-terminal substrate-domain of LysR-type transcriptional regulators involved in the catabolism of opines and that of related regulators, contains the type 2 periplasmic binding fold. This CD includes the C-terminal substrate-domain of LysR-type transcriptional regulators, OccR and NocR, involved in the catabolism of opines and that of LysR for lysine biosynthesis which clustered together in phylogenetic trees. Opines, such as octopine and nopaline, are low molecular weight compounds found in plant crown gall tumors that are produced by the parasitic bacterium Agrobacterium. There are at least 30 different opines identified so far. Opines are utilized by tumor-colonizing bacteria as a source of carbon, nitrogen, and energy. NocR and OccR belong to the family of LysR-type transcriptional regulators that positively regulates the catabolism of nopaline and octopine, respectively. Both nopaline and octopalin are arginine derivatives. In Agrobacterium tumefaciens, NocR regulates expression of the divergently transcribed nocB and nocR genes of the nopaline catabolism (noc) region. OccR protein activates the occQ operon of the Ti plasmid in response to octopine. This operon encodes proteins required for the uptake and catabolism of octopine. The occ operon also encodes the TraR protein, which is a quorum-sensing transcriptional regulator of the Ti plasmid tra regulon. LysR is the transcriptional activator of lysA gene encoding diaminopimelate decarboxylase, an enzyme that catalyses the decarboxylation of diaminopimelate to produce lysine. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.25236e-65
NZ_CP011236.1\|WP_010929791.1\|3614490_3615276_-\|crotonase/enoyl-CoA-hydratase-family-protein	gnl\|CDD\|181723	PRK09245, PRK09245, crotonase/enoyl-CoA hydratase family protein.	5.15941e-155
NZ_CP011236.1\|WP_010929789.1\|3617562_3618081_+\|MgtC/SapB-family-protein	gnl\|CDD\|224204	COG1285, SapB, Uncharacterized membrane protein [Function unknown].	1.12064e-44
NZ_CP011236.1\|WP_010929577.1\|3623213_3624164_-\|IS481-like-element-IS481-family-transposase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	9.02206e-23
NZ_CP011236.1\|WP_003814685.1\|3613452_3614424_-\|tripartite-tricarboxylate-transporter-substrate-binding-protein	gnl\|CDD\|270234	cd07012, PBP2_Bug_TTT, Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold. The Bug (Bordetella uptake gene) protein family is a large family of periplasmic solute-binding (PBP) proteins present in a number of bacterial species, but mainly in proteobacteria. In eubacteria, at least three families of periplasmic binding-protein dependent transporters are known: the ATP-binding cassette (ABC) transporters, the tripartite ATP-independent periplasmic transporters, and the tripartite tricarboxylate transporters (TTT). Bug proteins are the PBP components of the TTT. Their expansive expansion in proteobacteria indicates a large functional diversity. The best studied examples are Bordetella pertussis BugD, which is an aspartic acid transporter, and BugE, which is glutamate transporter.	2.06741e-117
NZ_CP011236.1\|WP_010929929.1\|3628468_3629629_-\|acyl-CoA-dehydrogenase	gnl\|CDD\|173849	cd01160, LCAD, Long chain acyl-CoA dehydrogenase. LCAD is an acyl-CoA dehydrogenases (ACAD), which is found in the mitochondria of eukaryotes and in some prokaryotes. It catalyzes the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of LCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. LCAD acts as a homodimer.	4.16688e-115
NZ_CP011236.1\|WP_003814701.1\|3621802_3622273_+\|universal-stress-protein	gnl\|CDD\|366180	pfam00582, Usp, Universal stress protein family. The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, though UspA lacks ATP-binding activity.	9.38587e-30
NZ_CP011236.1\|WP_003814694.1\|3616696_3617452_-\|TerC-family-protein	gnl\|CDD\|223930	COG0861, TerC, Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism].	1.14565e-78
NZ_CP011236.1\|WP_010929788.1\|3619869_3621270_+\|PLP-dependent-aminotransferase-family-protein	gnl\|CDD\|224089	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism].	3.43796e-109
NZ_CP011236.1\|WP_003820700.1\|3621369_3621714_+\|TIGR01244-family-phosphatase	gnl\|CDD\|225984	COG3453, COG3453, Uncharacterized protein conserved in bacteria [Function unknown].	3.40043e-35
NZ_CP011236.1\|WP_003814691.1\|3615268_3616501_-\|CoA-transferase	gnl\|CDD\|367110	pfam02515, CoA_transf_3, CoA-transferase family III. CoA-transferases are found in organisms from all lines of descent. Most of these enzymes belong to two well-known enzyme families, but recent work on unusual biochemical pathways of anaerobic bacteria has revealed the existence of a third family of CoA-transferases. The members of this enzyme family differ in sequence and reaction mechanism from CoA-transferases of the other families. Currently known enzymes of the new family are a formyl-CoA: oxalate CoA-transferase, a succinyl-CoA: (R)-benzylsuccinate CoA-transferase, an (E)-cinnamoyl-CoA: (R)-phenyllactate CoA-transferase, and a butyrobetainyl-CoA: (R)-carnitine CoA-transferase. In addition, a large number of proteins of unknown or differently annotated function from Bacteria, Archaea and Eukarya apparently belong to this enzyme family. Properties and reaction mechanisms of the CoA-transferases of family III are described and compared to those of the previously known CoA-transferases.	8.36236e-118
NZ_CP011236.1\|WP_019247419.1\|3611166_3612339_-\|acyl-CoA-dehydrogenase	gnl\|CDD\|173841	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26. Putative acyl-CoA dehydrogenases (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.	4.27565e-82
NZ_CP011236.1\|WP_003814681.1\|3612464_3613442_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176106	cd08414, PBP2_LTTR_aromatics_like, The C-terminal substrate binding domain of LysR-type transcriptional regulators involved in the catabolism of aromatic compounds and that of other related regulators, contains type 2 periplasmic binding fold. This CD includes the C-terminal substrate binding domain of LTTRs involved in degradation of aromatic compounds, such as CbnR, BenM, CatM, ClcR and TfdR, as well as that of other transcriptional regulators clustered together in phylogenetic trees, including XapR, HcaR, MprR, IlvR, BudR, AlsR, LysR, and OccR. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the substrate-binding domains from ionotropic glutamate receptors, LysR-like transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	2.33368e-60
NZ_CP011236.1\|WP_010929930.1\|3627459_3628431_-\|tripartite-tricarboxylate-transporter-substrate-binding-protein	gnl\|CDD\|270296	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family; contains the type 2 periplasmic binding fold. Bug27 binds non-carboxylated solute nicotinamide, in contrast to BugD (aspartic acid transporter) and BugE (glutamate transporter) which both bind aliphatic carboxylated ligands. The Bug (Bordetella uptake gene) protein family is a large family of periplasmic solute-binding (PBP) receptors present in a number of bacterial species, but mainly in proteobacteria. Bug proteins are the PBP components of the tripartite carboxylate transporters (TTT). Their expansive expansion in proteobacteria indicates a large functional diversity.	5.90573e-128
NZ_CP011236.1\|WP_019247421.1\|3622683_3623082_+\|GTP-binding-protein	gnl\|CDD\|234569	PRK00007, PRK00007, elongation factor G; Reviewed.	1.37761e-90
NZ_CP011236.1\|WP_003815550.1\|3629639_3630032_-\|MaoC-family-dehydratase	gnl\|CDD\|239525	cd03441, R_hydratase_like, (R)-hydratase [(R)-specific enoyl-CoA hydratase]. Catalyzes the hydration of trans-2-enoyl CoA to (R)-3-hydroxyacyl-CoA as part of the PHA (polyhydroxyalkanoate) biosynthetic pathway. The structure of the monomer includes a five-strand antiparallel beta-sheet wrapped around a central alpha helix, referred to as a hot dog fold. The active site lies within a substrate-binding tunnel formed by the homodimer. Other enzymes with this fold include MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and the fatty acid synthase beta subunit.	3.21769e-21
NZ_CP011236.1\|WP_003815546.1\|3630420_3630822_-\|Zn-ribbon-domain-containing-OB-fold-protein	gnl\|CDD\|224462	COG1545, COG1545, Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only].	5.62422e-24
NZ_CP011236.1\|WP_010929931.1\|3626303_3627452_-\|CoA-transferase	gnl\|CDD\|367110	pfam02515, CoA_transf_3, CoA-transferase family III. CoA-transferases are found in organisms from all lines of descent. Most of these enzymes belong to two well-known enzyme families, but recent work on unusual biochemical pathways of anaerobic bacteria has revealed the existence of a third family of CoA-transferases. The members of this enzyme family differ in sequence and reaction mechanism from CoA-transferases of the other families. Currently known enzymes of the new family are a formyl-CoA: oxalate CoA-transferase, a succinyl-CoA: (R)-benzylsuccinate CoA-transferase, an (E)-cinnamoyl-CoA: (R)-phenyllactate CoA-transferase, and a butyrobetainyl-CoA: (R)-carnitine CoA-transferase. In addition, a large number of proteins of unknown or differently annotated function from Bacteria, Archaea and Eukarya apparently belong to this enzyme family. Properties and reaction mechanisms of the CoA-transferases of family III are described and compared to those of the previously known CoA-transferases.	7.23571e-127

>NZ_CP011236.1|WP_003814701.1|3621802_3622273_+|universal-stress-protein
MFKKILIPTDGSPLSAQAANAGICFARSTGAEVVALHVTQPFAATIGFDGMAAAYAITDEDYEKASAEQAEKYLKLILDRAETAGVKAESRAVSNFNVADGIVQAAGEAGCDLIFIGSHGRSGLSRLLLGSVTAKVLSLAHTAVLVYRVKEDKDKK
>NZ_CP011236.1|WP_003820700.1|3621369_3621714_+|TIGR01244-family-phosphatase
MSAAIKPLTENFAVAPQLGPADMADVAAAGYKSVIINRPDFEGGPDQPTAADVSQAAQALGLQVEYQPVVGSAMTAADVARFAELLRTMPGPVLAYCRTGTRCTNLFAAAQQLG
>NZ_CP011236.1|WP_010929788.1|3619869_3621270_+|PLP-dependent-aminotransferase-family-protein
MRQADATLVTQLADDLARRIDEHGLRPGTRLPSIRRMAEQSGVSRFTVVEAYDRLVARGLVQSRHGAGFFVRARSASLTALASARVPQAAPETPVRVDVSWLLRNMFRETAAGMPGGAGLLPPEWLDPDMVAAAVRAVGRTVRGNLVSYGSPQGYAPLRQQLASMLQADGVPAHPERNLLTTNGVTHGLDIVARHLIKPGDTVLVEDPAWFVIFGRLAAFGARPVGVPRGPDGPDLAMLDRLAAEHKPRLYIINGAVHNPIGHTLSAGAAYDILRLAERHDFMVVEDDTYADLHPGGAMKLAALDRLERVILVGGFSKMLAASLRVGYIAAGAETLQRLTDLKMLAGLTSPELGERVVHRVLVEGQYQRHIERVRARVNEARLRSIQALQQLGLSVPHEPHAGMFVWADCGRDSEPVARNAAERGMLLAPGTLFSPSGAPSTMLRFSVAMVDTPGIWQSIAAVMAQ
>NZ_CP011236.1|WP_010929789.1|3617562_3618081_+|MgtC/SapB-family-protein
MDTVWMEIWTTVRNEFADIPDVAEATRIVLRLGMAVALGGLLGYERERSGKAAGLRTHMLVALGAALFVLVPLQGGMEVGDLSRVLQGVIAGIGFLGAGVIIKLGNEGEIRGLTTSAGIWLTAAIGVAAGMGREATALASTLIALFVLAALRRLEKRIAARDDKRVVAQPPP
>NZ_CP011236.1|WP_003814694.1|3616696_3617452_-|TerC-family-protein
MDYLVSLAQQPAAWAALATLIAMEVVLGIDNLIFISILTNKLPPQHQTKARRIGIGMALILRLALLGTVAFIVQLTQPVFELFGHGFSWRDVILVAGGLFLVWKATKEIHHHVDPNPGDDMFGGKAATLGFAAAVAQILMLDLVFSIDSIITAVGMTEHIPIMFVAVIVAVAVMLLAAEPLARFIERNPTVVMLALAFLMMIGMTLIAEGFGAHVPKGYIYAAMAFSALVEGLNMMARRAREGRGAGAAGG
>NZ_CP011236.1|WP_003814691.1|3615268_3616501_-|CoA-transferase
MSGPLEGVRILDVTTVLMGPYATQILGDLGADVIKVEPPAGDNVRGIGPGRHADMGGIFLHANRSKRSIALDLKNPAGREALLKVAATCDVLVYNVRPQAMARLGLSYAEVAQANPSILYVGMYGYDQRGPYAARAAYDDLIQGAVGIPSLSVEAGSDIPRYAPSAMVDRIVGISAANAVTAGLYHRARTGQGQAIDVPMFETMAHLILGDHMMGQTFEPPLGPPGYPRILNADRRPYATRNGHICVLLYADKHWKAFFELIGQPGRDAADPRFRDIGTRTQHIHAIYRLVSDAIASRTTEEWLAAFEAADIPAMPVHTMASLLRDPHLEAIGFFGMVDHPSEGAVRMMAVPSRWSGTPPQPRGHAPRLGEHSVDVLKEAGYDDEAIAALVRNGAAIAAARQLPEGTDHD
>NZ_CP011236.1|WP_010929791.1|3614490_3615276_-|crotonase/enoyl-CoA-hydratase-family-protein
MTDFLRHERHGGVLLLTMDRERTRNALSDADAVEALVQACARIGADLSVRAVVLTGSHGVFSSGGNLKTLSDTVGAGLGEPVHSLQAYRSGIQRIPLALYNLEVPTIAAVNGPAIGAGCDLACMCDIRLAARQASFAESFVKLGLTPGDGGAWLLPRIVGMSRACELAFTGRSIDAARARELGLVSEVFDADALLPAALALAQEIAQHSGHALRLTKRLLREGQHTRLDTLLELSAGFQALAHHTQEHAGALDAHLSRKRG
>NZ_CP011236.1|WP_003814685.1|3613452_3614424_-|tripartite-tricarboxylate-transporter-substrate-binding-protein
MHSRTLALALLSVAALAQGGSARAASDYPAHPVKIIVSLPPGSGADTTARFLSKHLAERFKQPFVVENRPGGNSFIAAQAVATAPPDGYTLFVASNSPMTTNAAVFKNLPYDAVKDFAPVAPIARFPMALVVPANSPYRSVADLVAAARAAPGQLNFASGTATYQVVLELFHEQNGIKATHVPYKGTSAALADVAGGVVQYSVADVSAALPLIRGGKLRPLAVTSTRRIKDLPDVPTMQESGNKGFEAYAWTAAFFPAKVDPAIVARVSDAVQALVRSQEGKAFMEQLGGEPFVGGPDTLAAFQRDELASMRRIAKLANIQQE
>NZ_CP011236.1|WP_003814681.1|3612464_3613442_+|LysR-family-transcriptional-regulator
MWTGQYIVHIASPAHHWRRAVELRQLKQLLVLSETLNFHRAAERLHMAQPPLSTAIKKLEQELGVQLFERLPAGLQPTPAAEVVLRYARATLFYADEIQRAAQEGASGKQGMLKVGFVGSSIYSLMPQLLSAFRKDYPRVDLVIEESTTVDLLRRLDAHTLDVALVRFPVLEPSTARITLLQADHLMLAVPAGSRYAQRDDVALDELADEPFIGYSRTHVPGMHALIMYAFQQYGVVPHIAQEAIQVQTILSLVESGLGLAIVPKVACRQAGSGVRLVNVPQLAETIKVGIALAVHPDNATPTTANFVDMACRLMQTEPAAGQAR
>NZ_CP011236.1|WP_019247419.1|3611166_3612339_-|acyl-CoA-dehydrogenase
MGAILGTIIEALQLAAIPAHDEALRPAVRAFLDEALREMPADRRARSWMGHDAEFSRALARQGWLGLTLPVEYGGAGRSNFARFVLSEELLAVGAPVSAHWVADRQTAPLILRFGSPAQRAFYLPRIIRGEAFFAIGMSEPDTGSDLASVRTRATPVADGWLLNGRKIWTTNAHRSHYMCALVRTSGAPEDRHRGLSQMIFDLALPGIEIRPIRDIAGDAHFCEVLFDNVLLPHDALVGEEGSGWRQVMAELALERSGPERIYSSMVLLDGWLAHLRCDAAPQRAQVCLAGRLAARLAVLRSMSLAVSQRLEQGADASLAAVLVKDLGTEFEQAVPELIGQALHASPQPAPDDVLMRTLAYLTLINPTFSLRGGTRHILRGIIARELGLR
>NZ_CP011236.1|WP_019247421.1|3622683_3623082_+|GTP-binding-protein
MTRRTSIERYRNIGISAHIDAGKATTTERILFYTGITHKLGEVHEGAATMDWMEQEQGRGITITSAATTAFWRGMAGNYPEHRINIIDTPGHVDFTIEVERSMRVLDGACMVYDSVGGVQEVATVMVVLPGQ
>NZ_CP011236.1|WP_010929577.1|3623213_3624164_-|IS481-like-element-IS481-family-transposase
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDKYNLLTVHS
>NZ_CP011236.1|WP_010929933.1|3624262_3625210_-|dihydrodipicolinate-synthase-family-protein
MQASHGARIDEQTSGVYVIAATPFADDGELDLASLDSLTDFYLDKDVAGLTILGMMGEASKLTEAETATVMTRILKRVDGRVPVVVGVSHPSNRHLERLARQAMELGAAGVMVAPAAGRHTDDQVYGYYATVAERLGADIPICLQDFPQSAGVHTSVAVIHRLVDDFPQVVMLKHEDFPGMRKLSQVRARSEAEGRRRISILVGNGGLFLPQEMLRGADGAMTGFAYPEMLVQVCRLFAAGKAEAAEDLFNLYLPLLRHEFQYGIGLALRKETLRRRGAIRSAYVRQPGPALDAVDHAELGRLIARLEAQLGRAA
>NZ_CP011236.1|WP_010929932.1|3625416_3626307_+|LysR-family-transcriptional-regulator
MKLNLRQIEVFRAVMITGSIRGASELLFVSQPAVSRLLSHMEQRIGFALFERIRGRLYATLEARKLFHEVEAVYAGVQRVNDMARDLFEHQEGILNLVASPSLGQMLIPAAIAQYRQAHPQVKLSFHHLTQAPLTERLLKRQADLALTILPAGHPNLEQEEIGAARMVLICPPGHPLAGREPVGAEALAPYPLVAYERGSAFGQKLQAWFDAQSVAARPVIEVGSPQNTCALVQAGAGVALVDEFSARSWPGAGFVMRPVRDLAPLTAYLLRLREEPASHLMQSFIETLRRVMRRA
>NZ_CP011236.1|WP_010929931.1|3626303_3627452_-|CoA-transferase
MLNHALAGITVLDFSQGIAGPHGACLLGEMGAEVIKIEPPAGDWLRGLGHRQGGTSVLFGYFNRGKAGVALDLKDHAQRRQALALIDKADVLIESNRPGVMARLGLGYEQARQRNPGLVYISVTGFGQDGPHRDLPATDAAMQAYSGFSFGAGDMRDPVRVRVSVVDIVTGVYVSNAALAALMARHGNQGQGQYIDLSLMHGISAVQGAKYAEHAATRGVISRELYAAIGIYPTRDGHIALSAMRDQQVTDFIGLAGRADLLADPRYATQQARYDNQDELRALIAAELAKQPTAHWIEAARRIDLICQPVQTYDQFRQDPQVRTYELFQDMDLGYDMPLPAVRMPGMTATQASLRPPPRLGADTAAVLRRHGASPPSADATP
>NZ_CP011236.1|WP_010929930.1|3627459_3628431_-|tripartite-tricarboxylate-transporter-substrate-binding-protein
MHGKNALRALLAGLALGATAAGAAPYPERPVRLIAPIAVGGLTDTLARLVASGLADKLGQPVVVENKPGAGGIIGMEAAAQAAPDGYTLILVYQGVAAVNASLYKNLPYDTRRDFAPVAGLGNFPLVLVASPASGIQSVGALLERAGKQAKAPSYASAGNATTSHLTMELFKNASGLQALHVPYKGEGPANTDVAGGQVDIAFSSLASVAPLVKSGRLVALGISTPERSAVLPDVPTIAQAGVADFEAVGWYGLLAPAGTPAEVVAKLSDAVAAVLDQPAIRAKLEALGVNARATPAADFGRQIDAETEKWRAVIQTAGITLD
>NZ_CP011236.1|WP_010929929.1|3628468_3629629_-|acyl-CoA-dehydrogenase
MQFTHEHRELARTTRRIIAEHLDPYLDEWEAAQMFPAHQVMKALGSAGLLGIGKPAEYGGMALDFSYEMVFAETLGEVRSSGLSSAIGVQSTMCTPALARHGSDALKRAYLAPTIAGDLVGCIGASEASAGSDVSQIKTWARRDGDDYVINGSKMWITNGVQGDWICLLCNTSQEGGPHKNKSLIIVPLDTPGVSVSRKLDKLVLRASDTAELFFDDVRVPVSNRIGAENMGFIYQMEQFQEERMFVAARGMRSMERVIEETIAYAGQRQVFGGTVLSNQVVYHKLAQMQTEIEALRSLLYRAIGQYLDGQDITQLASMAKYCAGRLSMRIPNECLQFWGGQGVMNENWISRAYRDLRQTAIGGGANEIMLEVIAKTMGIHPGKRA
>NZ_CP011236.1|WP_003815550.1|3629639_3630032_-|MaoC-family-dehydratase
MRNTMTQRLEEVSMRVTQADIDIYAELTDDFNPLHVDPAFAATTPMGGTIAHGTLSVNLIWQSLARSLGAAALARIDLDIRFLKPLFAGGAITAGGQPDAAEPDRYEVWVKGADGATLIAGHARLAPITD
>NZ_CP011236.1|WP_010929928.1|3630028_3630424_-|hypothetical-protein
MTQLYTYETFTPGTVLGEWAEPLDARLVATWGRLFGAEARDQPARQVGLTVALMIRAYLNVVTPRPPGNIHAQQILSIDGLPGVGETVRSRIRCLGKEIRRERRYLQLEVSGVGERERNLYTGRMNLIWAA
>NZ_CP011236.1|WP_003815546.1|3630420_3630822_-|Zn-ribbon-domain-containing-OB-fold-protein
MDKPPITPNAESLPFWQGCRDHRLRYQQCASCGTVQRIPRAVCTHCHGRALQWRDSAGQGVVLSHTTVRRAPTPAFKADTPYAIALVDLDEGFRLMVNVRGGAGAPLAIGARVRIVFEARGDGAVPIAEMETP

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 59497

Natrialba_phage(12.5%)

tRNA,transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010929569.1\|0_1920_+\|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	NA	NA	NA	NA
WP_003806878.1\|1916_2609_+	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA	NA	NA	NA
WP_003806879.1\|2605_3403_+	ParA family protein	Q8JL10	Natrialba_phage	5.6e-20	34.9
WP_010929570.1\|3409_4171_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_010929571.1\|4214_5132_+	ParB/RepB/Spo0J family partition protein	I3NLC2	Bifidobacterium_phage	1.9e-16	38.1
WP_019247667.1\|5124_5910_+	asparaginase	NA	NA	NA	NA
WP_019247666.1\|5943_6126_+	hypothetical protein	NA	NA	NA	NA
WP_003806883.1\|6721_7912_+	elongation factor Tu	A0A1V0SLW6	Klosneuvirus	3.1e-14	29.2
WP_003806884.1\|8150_8531_+	preprotein translocase subunit SecE	NA	NA	NA	NA
WP_003806885.1\|8540_9074_+	transcription termination/antitermination protein NusG	G3MAW2	Bacillus_virus	1.4e-11	30.5
WP_010929572.1\|9137_9569_+	50S ribosomal protein L11	NA	NA	NA	NA
WP_003806887.1\|9571_10270_+	50S ribosomal protein L1	NA	NA	NA	NA
WP_003806888.1\|10512_11037_+	50S ribosomal protein L10	NA	NA	NA	NA
WP_003806889.1\|11118_11502_+	50S ribosomal protein L7/L12	NA	NA	NA	NA
WP_010929573.1\|11661_15774_+	DNA-directed RNA polymerase subunit beta	A0A0N9R0J7	Chrysochromulina_ericina_virus	2.4e-21	28.8
WP_003818292.1\|15773_20018_+	DNA-directed RNA polymerase subunit beta'	A0A2I7QNZ7	Vibrio_phage	3.5e-68	24.7
WP_010929574.1\|20126_20531_-	TssQ family T6SS-associated lipoprotein	NA	NA	NA	NA
WP_010929575.1\|20771_21947_+	membrane protein	NA	NA	NA	NA
WP_010929576.1\|24352_25459_-	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA
WP_003818297.1\|26470_27286_+	response regulator transcription factor	NA	NA	NA	NA
WP_010930363.1\|27282_28233_-\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_023995007.1\|28314_28650_-	CoA transferase	NA	NA	NA	NA
WP_010929578.1\|28674_29109_-	hypothetical protein	NA	NA	NA	NA
WP_019247164.1\|29141_30359_-	thiolase family protein	NA	NA	NA	NA
WP_010929580.1\|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA
WP_019247165.1\|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_010929582.1\|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA
WP_010929583.1\|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA
WP_010929584.1\|34625_35576_+\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_010929584.1\|35674_36625_+\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_003814398.1\|36621_37812_-	MFS transporter	NA	NA	NA	NA
WP_010929585.1\|38061_38973_+\|tRNA	glycine--tRNA ligase subunit alpha	NA	NA	NA	NA
WP_010929586.1\|38974_41113_+\|tRNA	glycine--tRNA ligase subunit beta	NA	NA	NA	NA
WP_003814404.1\|41109_41649_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA
WP_003814405.1\|41652_42381_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA
WP_010929587.1\|42367_43261_+	M48 family metallopeptidase	NA	NA	NA	NA
WP_019247766.1\|43331_43727_+	lactoylglutathione lyase	NA	NA	NA	NA
WP_003814412.1\|43736_44267_+	peptide deformylase	E3SLL2	Synechococcus_phage	3.7e-12	35.4
WP_023852754.1\|44395_44695_-	DUF1974 domain-containing protein	NA	NA	NA	NA
WP_010929588.1\|44712_45663_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010929589.1\|46249_46798_+	hypothetical protein	NA	NA	NA	NA
WP_003815265.1\|46769_47006_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_003815255.1\|47133_48027_+	membrane protein	NA	NA	NA	NA
WP_010929590.1\|49196_50444_+	homoserine O-acetyltransferase	NA	NA	NA	NA
WP_003817748.1\|50440_51055_+	methionine biosynthesis protein MetW	NA	NA	NA	NA
WP_010929591.1\|51190_52141_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_029443813.1\|52183_53440_+	muropeptide transporter	NA	NA	NA	NA
WP_010929592.1\|54671_55406_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA
WP_019247224.1\|55411_56002_-	amino acid ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.2e-20	33.6
WP_003817737.1\|56026_56716_-	ABC transporter permease subunit	NA	NA	NA	NA
WP_023852650.1\|56712_57474_-	amino acid ABC transporter permease	NA	NA	NA	NA
WP_010929594.1\|57553_58453_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_005012808.1\|58546_59497_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA

DBSCAN-SWA_2

70134 : 123122

Planktothrix_phage(20.0%)

tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005012808.1\|70134_71085_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_003816713.1\|71178_71493_+	DUF1153 domain-containing protein	NA	NA	NA	NA
WP_010929604.1\|72685_74593_+	molecular chaperone HtpG	A0A1B1ISV4	uncultured_Mediterranean_phage	1.1e-117	37.2
WP_010929605.1\|74754_75375_-	glutathione S-transferase	NA	NA	NA	NA
WP_003807804.1\|75406_75988_-	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	A0A1W6DX33	Sphingobium_phage	1.7e-05	54.3
WP_003807805.1\|76076_76328_-	hypothetical protein	NA	NA	NA	NA
WP_010929606.1\|76329_77172_-	cytochrome c biogenesis protein CcsA	NA	NA	NA	NA
WP_010929607.1\|77277_78687_+	signal recognition particle protein	NA	NA	NA	NA
WP_005012067.1\|78683_79634_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_041166334.1\|79708_80653_+\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_010929608.1\|80649_82524_-	polysaccharide biosynthesis protein	A0A2P1ELS8	Moumouvirus	2.0e-23	26.9
WP_003807102.1\|83871_84576_-	DUF2837 family protein	NA	NA	NA	NA
WP_003807104.1\|84572_85679_-	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_010929610.1\|85940_86534_-	sugar transferase	NA	NA	NA	NA
WP_023853419.1\|86530_87718_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA
WP_010929612.1\|87780_89040_-	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_010929613.1\|89063_90152_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	A0A0N9R0B2	Chrysochromulina_ericina_virus	4.8e-46	36.3
WP_010929614.1\|90159_91260_-	DegT/DnrJ/EryC1/StrS family aminotransferase	A0A2K9L0G1	Tupanvirus	3.3e-31	29.7
WP_003807114.1\|91263_91839_-	N-acetyltransferase	NA	NA	NA	NA
WP_003807115.1\|91842_92895_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_010929615.1\|93025_94033_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA
WP_010929616.1\|94034_95321_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA
WP_010929617.1\|95517_96321_-	type III pantothenate kinase	NA	NA	NA	NA
WP_010929618.1\|96317_97184_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA
WP_010929619.1\|97258_98389_+	ABC transporter permease	NA	NA	NA	NA
WP_003807131.1\|98388_99228_+	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	9.1e-21	32.4
WP_010929620.1\|100160_100763_+	hypothetical protein	NA	NA	NA	NA
WP_010929621.1\|100792_101446_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_003807138.1\|101578_102835_+	D-alanyl-D-alanine carboxypeptidase	B6DZZ7	Stx2-converting_phage	6.2e-66	40.5
WP_023853421.1\|102915_103782_+	D-amino acid aminotransferase	NA	NA	NA	NA
WP_003818417.1\|103857_104133_+	YbeD family protein	NA	NA	NA	NA
WP_010929623.1\|104140_104803_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA
WP_003807146.1\|104864_105866_+	lipoyl synthase	NA	NA	NA	NA
WP_003807148.1\|105880_106429_-	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A291LA62	Escherichia_phage	3.7e-47	53.4
WP_010929624.1\|106486_107383_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA
WP_010929625.1\|107379_108441_-	dTDP-glucose 4,6-dehydratase	A0A1D7XFE8	Escherichia_phage	1.6e-78	44.8
WP_010929626.1\|108476_109427_-\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_010929627.1\|110326_111520_+	cystathionine beta-lyase	NA	NA	NA	NA
WP_010929628.1\|111601_112231_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA
WP_010927242.1\|112292_112976_-	SPOR domain-containing protein	NA	NA	NA	NA
WP_023853376.1\|112985_114668_-\|tRNA	arginine--tRNA ligase	NA	NA	NA	NA
WP_003815933.1\|114955_115303_+	DUF1840 domain-containing protein	NA	NA	NA	NA
WP_003815930.1\|115393_115711_+	hypothetical protein	NA	NA	NA	NA
WP_010931363.1\|115993_117010_+\|transposase	IS110-like element IS1663 family transposase	NA	NA	NA	NA
WP_003815929.1\|117085_117886_-	carbohydrate ABC transporter permease	NA	NA	NA	NA
WP_003815927.1\|117882_118758_-	sugar ABC transporter permease	NA	NA	NA	NA
WP_010929633.1\|118768_120061_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_010929634.1\|120103_121144_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	6.0e-22	33.7
WP_010929635.1\|121249_122071_-	phosphodiesterase	NA	NA	NA	NA
WP_005012067.1\|122171_123122_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA

DBSCAN-SWA_3

165942 : 226453

Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)

tRNA,protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005015810.1\|165942_166893_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010929659.1\|168336_169239_-	YgcG family protein	NA	NA	NA	NA
WP_003815889.1\|169216_169846_-	LemA family protein	NA	NA	NA	NA
WP_010929660.1\|170128_171559_+	DEAD/DEAH box helicase	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	5.8e-44	29.8
WP_010929661.1\|171592_172222_+	LysE family transporter	NA	NA	NA	NA
WP_003815895.1\|172270_173878_+	peptide chain release factor 3	A0A2K9L6L3	Tupanvirus	9.3e-14	37.8
WP_010929663.1\|173902_174586_+	hypothetical protein	NA	NA	NA	NA
WP_003815898.1\|174667_175144_-	bacterioferritin	NA	NA	NA	NA
WP_010929591.1\|175350_176301_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010929664.1\|177416_177944_+	META domain-containing protein	NA	NA	NA	NA
WP_010929665.1\|178035_178851_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA
WP_003808370.1\|178911_179646_+	sulfurtransferase	NA	NA	NA	NA
WP_010929666.1\|179683_181762_-\|tRNA	methionine--tRNA ligase	A0A1V0SHR2	Klosneuvirus	1.5e-27	23.6
WP_003808374.1\|182011_182284_-	hypothetical protein	NA	NA	NA	NA
WP_033446322.1\|182385_183471_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA
WP_010929668.1\|183474_185379_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA
WP_014486044.1\|185375_189050_+	DUF490 domain-containing protein	NA	NA	NA	NA
WP_010929670.1\|189110_189674_+	dCTP deaminase	S5VM63	Pseudomonas_phage	2.6e-72	75.3
WP_003808385.1\|189681_190104_-	glyoxalase	NA	NA	NA	NA
WP_010929671.1\|190131_190551_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA
WP_077274090.1\|190579_191026_-	GNAT family N-acetyltransferase	Q9AZG4	Lactococcus_phage	1.2e-08	29.4
WP_003808391.1\|191152_191650_+	hypothetical protein	NA	NA	NA	NA
WP_003808393.1\|191804_194075_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA
WP_019249381.1\|194150_195356_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_010929591.1\|195454_196405_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010929673.1\|196507_197143_+	superoxide dismutase	Q56AR7	Bacillus_thuringiensis_phage	2.8e-83	73.8
WP_019248671.1\|197139_198033_+	ZIP family metal transporter	NA	NA	NA	NA
WP_010929675.1\|198427_199528_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA
WP_010929676.1\|199609_199984_+	glycine cleavage system protein GcvH	NA	NA	NA	NA
WP_010929677.1\|200043_202908_+	aminomethyl-transferring glycine dehydrogenase	E3SN07	Prochlorococcus_phage	1.2e-261	51.4
WP_010929678.1\|203052_203793_-	FadR family transcriptional regulator	NA	NA	NA	NA
WP_010929679.1\|203862_205074_+	CoA transferase	NA	NA	NA	NA
WP_010929680.1\|205102_206071_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_010931070.1\|206684_207635_+\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_010929699.1\|207791_208115_+	phosphate starvation-inducible protein	NA	NA	NA	NA
WP_023853200.1\|208219_209260_-	cyclase	NA	NA	NA	NA
WP_010929697.1\|209265_210045_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA
WP_003807672.1\|210090_210387_-	YciI family protein	NA	NA	NA	NA
WP_003807674.1\|210412_210688_-	muconolactone Delta-isomerase	NA	NA	NA	NA
WP_003819086.1\|210744_211389_-	CoA transferase subunit B	NA	NA	NA	NA
WP_010929696.1\|211388_212075_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA
WP_033446325.1\|212273_213056_+	IclR family transcriptional regulator	NA	NA	NA	NA
WP_010929694.1\|213106_213832_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_010929693.1\|213863_215213_-	short-chain fatty acid transporter	NA	NA	NA	NA
WP_010929692.1\|215324_216257_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA
WP_033446404.1\|216714_219510_-\|protease	serine protease autotransporter SphB1	NA	NA	NA	NA
WP_023994893.1\|220103_222947_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA
WP_010929689.1\|223117_223837_+	7-cyano-7-deazaguanine synthase QueC	A0A0A0RPC6	Escherichia_phage	8.0e-50	43.9
WP_010929688.1\|223875_224424_-	N-acetyltransferase	A0A2H4J136	uncultured_Caudovirales_phage	1.2e-21	41.7
WP_010929687.1\|224578_225478_+	virginiamycin B lyase	NA	NA	NA	NA
WP_005012808.1\|225502_226453_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA

DBSCAN-SWA_4

234385 : 287973

Bacillus_phage(25.0%)

tRNA,protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005012067.1\|234385_235336_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010927663.1\|235422_236373_+\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_010930742.1\|236369_237320_-\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_010929700.1\|237418_238216_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_003814363.1\|239165_239576_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA
WP_003814358.1\|240597_241341_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_003814356.1\|241384_242428_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA
WP_003814355.1\|242598_244701_+	TRAP transporter large permease subunit	NA	NA	NA	NA
WP_003814351.1\|246111_247068_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_010929701.1\|247086_247578_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA
WP_010929702.1\|247574_248930_-	polynucleotide adenylyltransferase PcnB	A0A1B1IVF3	uncultured_Mediterranean_phage	3.4e-25	36.8
WP_010929703.1\|248930_249629_-	HAD-IB family hydrolase	NA	NA	NA	NA
WP_010929704.1\|249625_250327_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA
WP_003814339.1\|250579_251629_+	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	5.6e-68	43.6
WP_003814337.1\|251734_252676_-\|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	NA	NA	NA	NA
WP_010929705.1\|252672_254562_-	DNA mismatch repair endonuclease MutL	A0A1B2LRQ5	Wolbachia_phage	3.3e-79	32.8
WP_003814332.1\|254648_255287_+	membrane protein	NA	NA	NA	NA
WP_019247543.1\|255429_256815_-	N-acetylmuramoyl-L-alanine amidase	A0A2H4JCM7	uncultured_Caudovirales_phage	4.5e-17	30.3
WP_010929706.1\|256745_257282_-\|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	NA	NA	NA	NA
WP_010929707.1\|257433_258825_+	class II fumarate hydratase	NA	NA	NA	NA
WP_010929708.1\|258841_259822_-	AEC family transporter	NA	NA	NA	NA
WP_003814324.1\|259957_260941_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA
WP_010929709.1\|261005_261905_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_003814321.1\|262011_263766_+	gamma-glutamyltransferase	NA	NA	NA	NA
WP_010929710.1\|263773_264898_-	CoA transferase	NA	NA	NA	NA
WP_010929711.1\|264911_265892_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_005012067.1\|266622_267573_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010929712.1\|268132_268678_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA
WP_023852659.1\|268803_270381_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA
WP_004567834.1\|270396_271551_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA
WP_003817696.1\|271564_271690_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA
WP_010929714.1\|271686_273438_+	thiol reductant ABC exporter subunit CydD	W8CYL7	Bacillus_phage	3.4e-09	23.8
WP_010929715.1\|273434_275114_+	thiol reductant ABC exporter subunit CydC	W8CYL7	Bacillus_phage	3.6e-16	27.6
WP_010929716.1\|275176_275725_+	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	1.3e-28	43.1
WP_010929717.1\|276867_277146_+	DUF4148 domain-containing protein	NA	NA	NA	NA
WP_005012067.1\|278189_279140_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_077068974.1\|279126_279342_-	hypothetical protein	NA	NA	NA	NA
WP_010929718.1\|279417_279579_+	DUF4224 domain-containing protein	NA	NA	NA	NA
WP_003815821.1\|280245_280695_-\|protease	ClpXP protease specificity-enhancing factor	NA	NA	NA	NA
WP_003815819.1\|280704_281316_-	stringent starvation protein A	NA	NA	NA	NA
WP_010929720.1\|281474_282323_-	cytochrome c1	NA	NA	NA	NA
WP_003815816.1\|282348_283731_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA
WP_003815815.1\|283795_284437_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA
WP_010929721.1\|284576_285035_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA
WP_010927226.1\|285059_285836_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA
WP_014906092.1\|285889_287026_+\|protease	trypsin-like serine protease	W5SAB9	Pithovirus	1.2e-07	31.2
WP_005015810.1\|287022_287973_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA

DBSCAN-SWA_5

366353 : 432323

Streptococcus_phage(28.57%)

tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010929765.1\|366353_367304_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010929766.1\|368352_368991_+	trimeric intracellular cation channel family protein	NA	NA	NA	NA
WP_010929767.1\|369027_370371_-	NADP-specific glutamate dehydrogenase	NA	NA	NA	NA
WP_010929768.1\|370793_371582_-	exodeoxyribonuclease III	M1PSC0	Streptococcus_phage	1.2e-19	25.7
WP_010929769.1\|371719_372394_+	orotate phosphoribosyltransferase	NA	NA	NA	NA
WP_010929770.1\|372507_373962_-\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	NA	NA	NA	NA
WP_010929771.1\|373964_375503_-\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	NA	NA	NA	NA
WP_010929772.1\|375505_375814_-\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	NA	NA	NA	NA
WP_003815204.1\|376044_377088_+	rod shape-determining protein	NA	NA	NA	NA
WP_010929773.1\|377176_378061_+	rod shape-determining protein MreC	NA	NA	NA	NA
WP_003815202.1\|378047_378611_+	rod shape-determining protein MreD	NA	NA	NA	NA
WP_077093433.1\|378624_380577_+	penicillin-binding protein 2	NA	NA	NA	NA
WP_003815198.1\|380573_381710_+	rod shape-determining protein RodA	NA	NA	NA	NA
WP_010929775.1\|381735_382791_-	Ldh family oxidoreductase	NA	NA	NA	NA
WP_010929776.1\|382801_384295_-	DASS family sodium-coupled anion symporter	NA	NA	NA	NA
WP_010927138.1\|384507_385083_-	nucleoid occlusion factor SlmA	NA	NA	NA	NA
WP_010929777.1\|385132_385879_-	pyrimidine 5'-nucleotidase	NA	NA	NA	NA
WP_010929778.1\|385878_386781_-	acetylglutamate kinase	NA	NA	NA	NA
WP_010929779.1\|387042_387831_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_003815191.1\|387971_388463_-	TlpA family protein disulfide reductase	NA	NA	NA	NA
WP_003815190.1\|388459_389203_-	BON domain-containing protein	NA	NA	NA	NA
WP_033446211.1\|389199_389793_-	phosphoheptose isomerase	A0A067XQR2	Caulobacter_phage	5.6e-17	34.8
WP_100208326.1\|389801_390278_-	YraN family protein	NA	NA	NA	NA
WP_010929780.1\|390402_391341_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	NA	NA	NA
WP_010929781.1\|391337_391910_+	methylated-DNA--[protein]-cysteine S-methyltransferase	M1PFU9	Streptococcus_phage	3.2e-25	42.5
WP_005012067.1\|391906_392857_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010927231.1\|392993_393911_+	reductase	NA	NA	NA	NA
WP_003815842.1\|393907_394156_+	glutaredoxin family protein	NA	NA	NA	NA
WP_003815840.1\|394152_395358_+	CoA transferase	NA	NA	NA	NA
WP_014486045.1\|395430_396426_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_014486046.1\|396448_397669_-	CoA transferase	NA	NA	NA	NA
WP_014486047.1\|397665_398310_-	hypothetical protein	NA	NA	NA	NA
WP_019248476.1\|400040_400850_-	IclR family transcriptional regulator	NA	NA	NA	NA
WP_014486048.1\|401154_402108_+	thioredoxin-disulfide reductase	A0A2I2L5E1	Orpheovirus	5.6e-59	42.5
WP_014486049.1\|402206_403190_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_014486050.1\|403116_403818_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_014486051.1\|403866_404637_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA
WP_019247259.1\|404633_405812_-	CoA transferase	NA	NA	NA	NA
WP_014486052.1\|405979_407686_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA
WP_014486053.1\|407682_408579_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_014486054.1\|408619_410209_-	sulfurtransferase	NA	NA	NA	NA
WP_003807867.1\|410258_411251_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_003807865.1\|411319_411919_-	hypothetical protein	NA	NA	NA	NA
WP_014486055.1\|412379_413360_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_010929577.1\|413435_414386_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_047122777.1\|414474_415389_+	DMT family transporter	NA	NA	NA	NA
WP_010929782.1\|415385_416045_+	LysE family translocator	NA	NA	NA	NA
WP_003814709.1\|416134_417058_+	alpha/beta fold hydrolase	A0A1C9C5K3	Heterosigma_akashiwo_virus	4.8e-07	27.2
WP_010929783.1\|417063_417519_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA
WP_010929784.1\|417515_418619_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA
WP_157734656.1\|418577_418847_+	hypothetical protein	NA	NA	NA	NA
WP_010927086.1\|418806_420426_-	glycosyltransferase family 39 protein	NA	NA	NA	NA
WP_003814720.1\|420422_421481_-	glycosyltransferase family 2 protein	I1TED8	Salmonella_phage	2.8e-59	40.5
WP_033446199.1\|421610_422105_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_022997984.1\|422197_423175_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010929785.1\|423370_424576_+	sodium/glutamate symporter	NA	NA	NA	NA
WP_010929786.1\|424572_426084_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA
WP_003814728.1\|427604_427784_-	hypothetical protein	NA	NA	NA	NA
WP_003814730.1\|428193_428928_-	DNA polymerase III subunit epsilon	A0A1X9SH08	Bradyrhizobium_phage	1.4e-41	43.8
WP_010929577.1\|431372_432323_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA

DBSCAN-SWA_6

469551 : 587446

101

Acinetobacter_phage(22.22%)

tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010929591.1\|469551_470502_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010929956.1\|470600_471551_+\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_010929957.1\|472273_473548_+\|tRNA	glutamyl-tRNA reductase	NA	NA	NA	NA
WP_003807618.1\|473634_474717_+	peptide chain release factor 1	A0A0S4KWG0	Pseudomonas_phage	3.3e-07	40.7
WP_010929958.1\|474727_475540_+	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA
WP_010929959.1\|475576_475903_+	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA
WP_003807624.1\|475907_476468_+	UbiX family flavin prenyltransferase	NA	NA	NA	NA
WP_003819054.1\|476708_477701_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_010929960.1\|477719_478715_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_023853194.1\|478730_480107_+	FAD binding domain in molybdopterin dehydrogenase	A0A0P0IVM8	Acinetobacter_phage	2.4e-18	37.3
WP_010929962.1\|480099_482481_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA
WP_019247263.1\|482497_482887_+	SRPBCC family protein	NA	NA	NA	NA
WP_020699695.1\|483013_483244_+	hypothetical protein	NA	NA	NA	NA
WP_005012067.1\|483348_484299_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010929963.1\|484397_485348_-	septal ring lytic transglycosylase RlpA family protein	F5B3X9	Synechococcus_phage	6.9e-17	47.2
WP_003815183.1\|485344_486217_-	RNase adapter RapZ	A0A1P8D5W0	Corynebacterium_phage	2.4e-08	34.5
WP_010929964.1\|487147_488434_+	cytochrome c	NA	NA	NA	NA
WP_010929965.1\|488487_489414_-	HPr kinase/phosphorylase	NA	NA	NA	NA
WP_010929966.1\|489432_489888_-	PTS transporter subunit EIIA	NA	NA	NA	NA
WP_003815177.1\|490739_491531_-	LPS export ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	9.5e-20	27.4
WP_003815175.1\|491562_492183_-	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA
WP_010929967.1\|492179_492809_-	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA
WP_003815172.1\|492821_493430_-	HAD-IIIA family hydrolase	E3T535	Cafeteria_roenbergensis_virus	5.2e-10	26.1
WP_003815171.1\|493426_494416_-	KpsF/GutQ family sugar-phosphate isomerase	A0A2P0VNK5	Tetraselmis_virus	4.3e-38	37.7
WP_010929968.1\|494521_495736_+	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA
WP_010929969.1\|497687_498638_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010929970.1\|500071_501358_+	membrane protein	NA	NA	NA	NA
WP_010929971.1\|501523_501832_+	FmdB family transcriptional regulator	NA	NA	NA	NA
WP_033446243.1\|501853_502498_+	DUF502 domain-containing protein	A0A2I7S9X1	Vibrio_phage	8.5e-11	28.4
WP_003807038.1\|502538_504329_+\|tRNA	aspartate--tRNA ligase	A0A1V0SAC0	Catovirus	6.5e-08	25.5
WP_010929972.1\|504441_505302_+	endonuclease	NA	NA	NA	NA
WP_010929973.1\|505298_506504_+	cardiolipin synthase ClsB	NA	NA	NA	NA
WP_010929974.1\|506500_507385_-	DMT family transporter	NA	NA	NA	NA
WP_033446233.1\|508901_509336_-	carbon monoxide dehydrogenase	NA	NA	NA	NA
WP_014905478.1\|509298_510297_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010931408.1\|510408_511554_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_010931407.1\|511628_512957_+	amidase	NA	NA	NA	NA
WP_003815296.1\|512990_513581_-	cysteine dioxygenase	NA	NA	NA	NA
WP_010931406.1\|513870_514665_+	IclR family transcriptional regulator	NA	NA	NA	NA
WP_019249391.1\|515834_516569_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA
WP_010931404.1\|516575_517442_-	copper resistance protein B	NA	NA	NA	NA
WP_010931403.1\|517449_519225_-	copper resistance system multicopper oxidase	NA	NA	NA	NA
WP_029443756.1\|519267_519765_-	cupredoxin family protein	NA	NA	NA	NA
WP_005013747.1\|520061_521012_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_014486105.1\|521110_522061_-\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_010931400.1\|522401_523352_-\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_010931399.1\|525675_526824_-	acyl-CoA dehydrogenase	NA	NA	NA	NA
WP_010931398.1\|526868_527492_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_010931397.1\|527644_528637_+	nitronate monooxygenase	NA	NA	NA	NA
WP_003815313.1\|528633_529371_+	enoyl-CoA hydratase	NA	NA	NA	NA
WP_003815315.1\|529450_530272_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA
WP_010931396.1\|530360_531224_+	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA
WP_003815317.1\|531350_531587_+	hypothetical protein	NA	NA	NA	NA
WP_010931395.1\|533561_534596_+	hypothetical protein	NA	NA	NA	NA
WP_003817805.1\|534654_535632_+	ABC transporter permease	NA	NA	NA	NA
WP_010931394.1\|535639_536560_+	ABC transporter permease	NA	NA	NA	NA
WP_023852622.1\|536556_538257_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.0e-15	32.7
WP_010931393.1\|538259_539165_+	hydrolase	NA	NA	NA	NA
WP_010931392.1\|539208_540342_+	M20 family metallopeptidase	NA	NA	NA	NA
WP_005012808.1\|540470_541421_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010931391.1\|541519_543589_-	UvrD-helicase domain-containing protein	A7KV33	Bacillus_phage	2.6e-101	37.3
WP_019247688.1\|543631_545734_-	primosomal protein N'	NA	NA	NA	NA
WP_010931389.1\|546040_547117_-	uroporphyrinogen decarboxylase	NA	NA	NA	NA
WP_010931388.1\|547192_548077_-	hypothetical protein	NA	NA	NA	NA
WP_003815341.1\|548259_548682_-	F0F1 ATP synthase subunit epsilon	NA	NA	NA	NA
WP_010931387.1\|548691_550092_-	F0F1 ATP synthase subunit beta	NA	NA	NA	NA
WP_003817813.1\|550134_551040_-	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA
WP_010931386.1\|551138_552680_-	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA
WP_003815348.1\|552714_553254_-	F0F1 ATP synthase subunit delta	NA	NA	NA	NA
WP_010931385.1\|553266_553737_-	F0F1 ATP synthase subunit B	NA	NA	NA	NA
WP_003815363.1\|553874_554117_-	F0F1 ATP synthase subunit C	NA	NA	NA	NA
WP_003815364.1\|554233_555115_-	F0F1 ATP synthase subunit A	NA	NA	NA	NA
WP_003815365.1\|555187_555508_-	ABC transporter permease	NA	NA	NA	NA
WP_023852617.1\|556359_557310_+\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_003815367.1\|558633_559410_-	enoyl-CoA hydratase	NA	NA	NA	NA
WP_010931383.1\|559444_561217_+	M61 family metallopeptidase	NA	NA	NA	NA
WP_010931382.1\|561218_562121_-	NAD(P)/FAD-dependent oxidoreductase	G3MA85	Bacillus_virus	1.9e-08	24.0
WP_003817821.1\|562245_562605_+	dihydroneopterin aldolase	NA	NA	NA	NA
WP_010931381.1\|562636_563599_+\|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	A0A0U2S5Z2	Escherichia_phage	4.6e-93	64.5
WP_005012067.1\|563697_564648_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010931380.1\|564660_565596_-	D-2-hydroxyacid dehydrogenase family protein	A0A1J0F959	Only_Syngen_Nebraska_virus	6.4e-15	27.7
WP_010931379.1\|565655_566495_-	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA
WP_010931378.1\|566491_567661_-	UbiH/UbiF family hydroxylase	NA	NA	NA	NA
WP_003815379.1\|567657_568947_-	murein transglycosylase A	NA	NA	NA	NA
WP_003815381.1\|568989_569364_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA
WP_023852620.1\|569478_570207_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA
WP_010931377.1\|570214_570919_+	phosphoglycolate phosphatase	NA	NA	NA	NA
WP_010931376.1\|571182_572703_+	anthranilate synthase component I	S4VT78	Pandoravirus	9.0e-43	32.1
WP_003815390.1\|572758_573322_+	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	1.1e-65	62.1
WP_003817833.1\|573340_574372_+	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	7.4e-73	42.7
WP_010931375.1\|574368_575157_+	indole-3-glycerol phosphate synthase TrpC	A0A0P0IR83	Acinetobacter_phage	5.1e-66	53.0
WP_023997720.1\|575332_576322_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_005012067.1\|578078_579029_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010931374.1\|580251_581154_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_003814312.1\|581155_582010_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA
WP_010931373.1\|582056_583166_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_010931372.1\|583176_583695_-	flavin reductase family protein	NA	NA	NA	NA
WP_003814302.1\|583724_584357_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA
WP_003814300.1\|584428_585088_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA
WP_023852703.1\|585084_586224_-	MFS transporter	NA	NA	NA	NA
WP_019247745.1\|586573_587446_+\|tRNA	tRNA threonylcarbamoyladenosine dehydratase	NA	NA	NA	NA

DBSCAN-SWA_7

591860 : 655693

Pandoravirus(12.5%)

tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010929632.1\|591860_592877_-\|transposase	IS110-like element IS1663 family transposase	NA	NA	NA	NA
WP_003814287.1\|593148_593775_-	hypothetical protein	NA	NA	NA	NA
WP_010931367.1\|593830_594958_-	aminodeoxychorismate synthase component I	S4VT78	Pandoravirus	3.8e-38	37.8
WP_003814283.1\|594963_600681_-	excinuclease ABC subunit UvrA	A0A1B1IVR3	uncultured_Mediterranean_phage	1.0e-195	39.5
WP_003814277.1\|601248_602193_-	LysR family transcriptional regulator	A0A2P0ZL89	Lactobacillus_phage	8.4e-07	23.2
WP_003814275.1\|602381_603317_+	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_010931365.1\|603434_605006_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_019247692.1\|605085_606294_+	ABC transporter permease	NA	NA	NA	NA
WP_019247693.1\|606791_607709_+	DMT family transporter	NA	NA	NA	NA
WP_003814254.1\|610069_610291_+	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA
WP_010929632.1\|610621_611638_+\|transposase	IS110-like element IS1663 family transposase	NA	NA	NA	NA
WP_003814252.1\|611722_611974_-	cell division topological specificity factor MinE	NA	NA	NA	NA
WP_003814250.1\|611977_612793_-	septum site-determining protein MinD	NA	NA	NA	NA
WP_010931362.1\|612905_613784_-	septum site-determining protein MinC	NA	NA	NA	NA
WP_003820957.1\|613895_615659_-\|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	A0A222YZ70	Escherichia_phage	5.0e-162	50.0
WP_010931361.1\|615774_617115_+	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA
WP_010927010.1\|618184_619609_-	HAMP domain-containing protein	NA	NA	NA	NA
WP_003814239.1\|619608_620310_-	response regulator	W8CYM9	Bacillus_phage	5.6e-32	36.6
WP_010930179.1\|621814_622765_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_023994844.1\|622860_623832_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_010931357.1\|623836_624517_-	tellurite resistance TerB family protein	NA	NA	NA	NA
WP_003814742.1\|624654_625047_+	OsmC family protein	NA	NA	NA	NA
WP_010931561.1\|625154_626171_-\|transposase	IS110-like element IS1663 family transposase	NA	NA	NA	NA
WP_003814739.1\|626410_627196_-	enoyl-ACP reductase FabI	NA	NA	NA	NA
WP_010931356.1\|627290_628700_-	transglycosylase SLT domain-containing protein	NA	NA	NA	NA
WP_010927090.1\|628710_629511_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA
WP_010931355.1\|629531_630302_+	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_010931354.1\|630344_630812_+	ribonuclease HI	J9Q745	Salmonella_phage	5.6e-36	50.7
WP_005013747.1\|630808_631759_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_003818344.1\|633707_634586_-	fatty acid desaturase	NA	NA	NA	NA
WP_019247959.1\|635512_638491_-	hypothetical protein	NA	NA	NA	NA
WP_010931070.1\|638844_639795_+\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_010931353.1\|639791_640880_-	NAD(P)H-binding protein	NA	NA	NA	NA
WP_010931352.1\|640915_641779_-	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA
WP_010931351.1\|642918_643308_-	hypothetical protein	NA	NA	NA	NA
WP_014486103.1\|643311_644094_-	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA
WP_047122778.1\|644127_644913_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_010931349.1\|645188_646328_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_010931348.1\|646324_647116_+	ATP-binding cassette domain-containing protein	A0A1M7XV31	Cedratvirus	1.7e-08	29.4
WP_010931347.1\|647112_647862_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.9e-09	27.8
WP_010931346.1\|647858_648731_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
WP_004566224.1\|648730_649732_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
WP_003808195.1\|649728_650892_+	acyl-CoA dehydrogenase	NA	NA	NA	NA
WP_003808193.1\|650917_651601_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_019247312.1\|651554_652889_+	AMP-binding protein	NA	NA	NA	NA
WP_010931344.1\|652881_653976_+	CoA transferase	NA	NA	NA	NA
WP_005012067.1\|654742_655693_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA

DBSCAN-SWA_8

674604 : 751913

Bacillus_phage(20.0%)

tRNA,protease,transposase,integrase

attL 721741:721759|attR 741629:741647

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_023995489.1\|674604_675555_-\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_010931335.1\|675653_677129_-	M81 family metallopeptidase	NA	NA	NA	NA
WP_010931334.1\|678716_679604_-	ABC transporter permease	NA	NA	NA	NA
WP_010931333.1\|679606_680548_-	ABC transporter permease	NA	NA	NA	NA
WP_010931332.1\|680593_682159_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_010931331.1\|683936_685262_-	aspartate aminotransferase family protein	NA	NA	NA	NA
WP_010931330.1\|685444_686902_+	PLP-dependent aminotransferase family protein	A0A1X9I5H2	Streptococcus_phage	7.6e-15	21.1
WP_003816386.1\|686865_687363_-	dihydrofolate reductase	A0A140HLG8	Bacillus_phage	3.0e-24	38.9
WP_010931328.1\|687393_688365_-	thymidylate synthase	J7KKN7	Erwinia_phage	4.8e-50	33.3
WP_023994724.1\|688417_688849_-	OsmC family protein	NA	NA	NA	NA
WP_010931327.1\|688978_689647_+	2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone monooxygenase	NA	NA	NA	NA
WP_003808448.1\|690375_691479_+	glycosyl transferase	NA	NA	NA	NA
WP_010931326.1\|691584_692859_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	NA	NA	NA
WP_010930472.1\|692870_693896_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	A0A2K9L4U8	Tupanvirus	4.7e-72	44.2
WP_010931325.1\|693897_695268_+	membrane protein	NA	NA	NA	NA
WP_010931324.1\|695268_696405_+	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_010931323.1\|696451_698377_+	asparagine synthase (glutamine-hydrolyzing)	A0A2K9R7N5	Dishui_lake_phycodnavirus	1.0e-27	29.0
WP_010931322.1\|698373_699495_+	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_010931321.1\|699491_700646_+	glycosyltransferase	NA	NA	NA	NA
WP_010931320.1\|700642_701773_+	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_003808462.1\|701780_703346_-	glucose-6-phosphate isomerase	NA	NA	NA	NA
WP_010931319.1\|703352_704735_-	phosphomannomutase/phosphoglucomutase	A0A127AWJ1	Bacillus_phage	6.2e-51	31.6
WP_003808465.1\|705013_705625_+	hypothetical protein	NA	NA	NA	NA
WP_010931317.1\|705716_707132_+	FAD-binding oxidoreductase	NA	NA	NA	NA
WP_003818936.1\|707149_707860_+	response regulator transcription factor	NA	NA	NA	NA
WP_010931316.1\|707856_709179_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA
WP_010931315.1\|709258_711220_+	sulfatase-like hydrolase/transferase	NA	NA	NA	NA
WP_003818932.1\|711345_712659_-	fumarylacetoacetase	NA	NA	NA	NA
WP_003818930.1\|712767_714066_-	homogentisate 1,2-dioxygenase	NA	NA	NA	NA
WP_010931314.1\|714248_715157_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_003808487.1\|715166_715376_-	DUF2783 domain-containing protein	NA	NA	NA	NA
WP_003808489.1\|715387_717067_-	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_010931313.1\|717168_718122_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_010925978.1\|718212_719040_-	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA	NA	NA	NA
WP_010931312.1\|719038_720925_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_003818921.1\|720921_721521_+	lipoprotein localization protein LolB	NA	NA	NA	NA
WP_010931311.1\|721569_722469_+	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	NA	NA	NA	NA
721741:721759	attL	NA	NA	NA	NA
WP_010931310.1\|722677_723628_+	ribose-phosphate pyrophosphokinase	A0A2K9L8D8	Tupanvirus	7.3e-43	35.5
WP_029443719.1\|723750_724365_+	50S ribosomal protein L25/general stress protein Ctc	NA	NA	NA	NA
WP_010931308.1\|724493_725090_+\|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
WP_010931307.1\|725086_725869_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_010931306.1\|725941_727033_+	redox-regulated ATPase YchF	NA	NA	NA	NA
WP_010931305.1\|727312_728440_+\|integrase	site-specific integrase	A0A1B0VMI6	Pseudomonas_phage	1.4e-48	33.6
WP_010931304.1\|728781_729828_+	Fic family protein	NA	NA	NA	NA
WP_019247951.1\|730338_733095_+	DEAD/DEAH box helicase family protein	NA	NA	NA	NA
WP_010931302.1\|733096_736048_+	restriction endonuclease subunit M	G8I4P9	Mycobacterium_phage	2.9e-21	25.1
WP_010931301.1\|736063_737275_+	AAA family ATPase	NA	NA	NA	NA
WP_076879586.1\|737271_737472_+	hypothetical protein	NA	NA	NA	NA
WP_005013747.1\|737458_738409_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_077274087.1\|738425_738920_+	DUF4276 family protein	NA	NA	NA	NA
WP_019247740.1\|738923_739181_+	hypothetical protein	NA	NA	NA	NA
WP_019248455.1\|739724_740636_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA
WP_029443992.1\|740717_741002_+	ATP-dependent helicase	A0A1V0SIN4	Klosneuvirus	6.8e-05	34.1
WP_005012067.1\|741785_742736_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
741629:741647	attR	NA	NA	NA	NA
WP_019247178.1\|743154_745719_-	autotransporter domain-containing protein	NA	NA	NA	NA
WP_019247179.1\|745763_747617_-	hypothetical protein	NA	NA	NA	NA
WP_014905963.1\|747949_749521_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_162291319.1\|750789_750945_-	hypothetical protein	NA	NA	NA	NA
WP_005012067.1\|750962_751913_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA

DBSCAN-SWA_9

1005154 : 1107285

Bacillus_virus(27.27%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005012067.1\|1005154_1006105_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_014486100.1\|1006207_1006870_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_019249309.1\|1006964_1007135_+	hypothetical protein	NA	NA	NA	NA
WP_019247599.1\|1007487_1008489_+	amidase	NA	NA	NA	NA
WP_003818702.1\|1008491_1009688_+	CoA transferase	NA	NA	NA	NA
WP_014486098.1\|1009708_1010512_+	enoyl-CoA hydratase	NA	NA	NA	NA
WP_019247598.1\|1010592_1010889_+	hypothetical protein	NA	NA	NA	NA
WP_019247597.1\|1010919_1011483_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_014486097.1\|1011523_1012381_+	ABC transporter permease	NA	NA	NA	NA
WP_003818698.1\|1012388_1013138_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	6.2e-29	33.5
WP_014486096.1\|1013159_1014032_+	polysaccharide deacetylase family protein	NA	NA	NA	NA
WP_014486095.1\|1014060_1014840_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_014486094.1\|1014873_1015671_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_003808978.1\|1018325_1018718_+	hypothetical protein	NA	NA	NA	NA
WP_014486091.1\|1018711_1019572_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
WP_003818691.1\|1019575_1020538_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
WP_014486089.1\|1021314_1022004_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	4.8e-12	28.8
WP_010930208.1\|1022864_1023815_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010931181.1\|1024164_1025034_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_010926062.1\|1025104_1025800_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_010931179.1\|1025789_1026299_+	nucleoside deaminase	NA	NA	NA	NA
WP_010931178.1\|1026295_1027516_+	MFS transporter	NA	NA	NA	NA
WP_010931177.1\|1027463_1028366_-	transcriptional regulator GcvA	NA	NA	NA	NA
WP_023997744.1\|1029252_1030539_+\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_010931176.1\|1030577_1031951_+	amidase	NA	NA	NA	NA
WP_010931175.1\|1031989_1032691_-	riboflavin synthase	NA	NA	NA	NA
WP_010931174.1\|1032989_1033979_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_003809010.1\|1034079_1034541_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
WP_010931173.1\|1034556_1035105_-	hypothetical protein	NA	NA	NA	NA
WP_010931172.1\|1035246_1036722_-	acyl--CoA ligase	Q75ZG1	Hepacivirus	3.0e-35	25.6
WP_010931171.1\|1036827_1037919_+	DUF2817 domain-containing protein	NA	NA	NA	NA
WP_010931170.1\|1037922_1038705_-	ABC transporter permease	NA	NA	NA	NA
WP_010931169.1\|1038714_1039503_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.1e-33	40.0
WP_010931168.1\|1040628_1041063_-	PaaI family thioesterase	NA	NA	NA	NA
WP_010931167.1\|1041059_1042070_-	zinc-binding dehydrogenase	NA	NA	NA	NA
WP_003809025.1\|1042113_1043040_-	VOC family protein	NA	NA	NA	NA
WP_003809026.1\|1043326_1043695_+	DUF861 domain-containing protein	NA	NA	NA	NA
WP_154698394.1\|1043747_1043894_-	hypothetical protein	NA	NA	NA	NA
WP_023853143.1\|1043911_1044862_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010931165.1\|1044906_1047333_+	copper-translocating P-type ATPase	A0A218MNH6	uncultured_virus	1.2e-86	33.8
WP_010931164.1\|1047381_1048074_+	HD domain-containing protein	A0A1D6Y7U0	Golden_Marseillevirus	4.7e-07	29.9
WP_010931163.1\|1048146_1049346_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA
WP_003819549.1\|1049363_1050269_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_010931162.1\|1050384_1051314_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_010931161.1\|1051339_1052686_+	MFS transporter	NA	NA	NA	NA
WP_019247888.1\|1052698_1053463_+	SDR family oxidoreductase	A0A0M4JSW6	Mollivirus	3.1e-12	26.5
WP_010931159.1\|1053476_1054259_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_005012067.1\|1054451_1055402_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010931158.1\|1055463_1056573_-	porin	NA	NA	NA	NA
WP_003815281.1\|1057085_1057922_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	1.6e-33	33.3
WP_010931157.1\|1058048_1058957_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_005012067.1\|1058953_1059904_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_023998107.1\|1059921_1060092_+	hypothetical protein	NA	NA	NA	NA
WP_019247492.1\|1060289_1060832_+	hypothetical protein	NA	NA	NA	NA
WP_005012067.1\|1061867_1062818_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_019247402.1\|1063059_1063428_+	hypothetical protein	NA	NA	NA	NA
WP_019248356.1\|1063473_1064598_+	hypothetical protein	NA	NA	NA	NA
WP_003820818.1\|1065732_1066473_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_010931155.1\|1066576_1067197_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_023852714.1\|1067300_1068251_+\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_010931154.1\|1068247_1070356_-	AsmA family protein	NA	NA	NA	NA
WP_003820814.1\|1070500_1071160_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA
WP_003820813.1\|1071191_1071656_-	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA
WP_019248355.1\|1071931_1072117_+	hypothetical protein	NA	NA	NA	NA
WP_010931153.1\|1072168_1072921_-	DNA-binding protein	NA	NA	NA	NA
WP_010931152.1\|1072927_1074190_-	extracellular solute-binding protein	NA	NA	NA	NA
WP_023852748.1\|1074231_1075470_-\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_003820806.1\|1076547_1077675_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.2e-23	32.3
WP_003814524.1\|1077685_1078513_-	carbohydrate ABC transporter permease	NA	NA	NA	NA
WP_010931150.1\|1078499_1079366_-	sugar ABC transporter permease	NA	NA	NA	NA
WP_010931149.1\|1080732_1081137_-	hypothetical protein	NA	NA	NA	NA
WP_005012808.1\|1081228_1082179_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_155120814.1\|1082196_1082361_+	hypothetical protein	NA	NA	NA	NA
WP_033446288.1\|1082548_1083460_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_003820799.1\|1083474_1084185_+	FadR family transcriptional regulator	NA	NA	NA	NA
WP_010931147.1\|1084181_1085426_+	DUF521 domain-containing protein	NA	NA	NA	NA
WP_003820797.1\|1085427_1085862_+	DUF126 domain-containing protein	NA	NA	NA	NA
WP_003814535.1\|1085890_1086196_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_005012067.1\|1086294_1087245_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_023994659.1\|1087301_1088450_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA
WP_010930176.1\|1088530_1089481_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010931144.1\|1090012_1090810_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_019247918.1\|1090857_1091511_-	ABC transporter permease	NA	NA	NA	NA
WP_003814544.1\|1091467_1092556_-	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	8.7e-32	36.4
WP_003814547.1\|1092720_1094946_-	glycoside hydrolase family 31 protein	NA	NA	NA	NA
WP_023852715.1\|1097223_1098120_+	inositol monophosphatase	NA	NA	NA	NA
WP_162268686.1\|1098073_1098223_-	hypothetical protein	NA	NA	NA	NA
WP_005012067.1\|1098240_1099191_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010931141.1\|1099187_1100879_-	AMP-binding protein	A0A2H4PQU7	Staphylococcus_phage	9.4e-33	28.1
WP_010931140.1\|1100940_1102137_+	amidohydrolase	NA	NA	NA	NA
WP_003814552.1\|1102150_1103029_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_010929220.1\|1103135_1104182_+	YeiH family putative sulfate export transporter	NA	NA	NA	NA
WP_003814554.1\|1104245_1104656_+	acyl-CoA thioesterase	NA	NA	NA	NA
WP_003814555.1\|1104666_1106139_+	magnesium transporter	NA	NA	NA	NA
WP_005012067.1\|1106334_1107285_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA

DBSCAN-SWA_10

1130626 : 1201597

uncultured_Mediterranean_phage(25.0%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005012808.1\|1130626_1131577_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010931130.1\|1131633_1132746_+	Ldh family oxidoreductase	NA	NA	NA	NA
WP_005012067.1\|1135129_1136080_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010931129.1\|1136670_1137447_+	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA
WP_003812908.1\|1137564_1137828_-	30S ribosomal protein S20	NA	NA	NA	NA
WP_010931128.1\|1137928_1138933_-	DUF4880 domain-containing protein	NA	NA	NA	NA
WP_010931127.1\|1139133_1140735_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA
WP_010931126.1\|1140760_1141519_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA
WP_010931125.1\|1141610_1142267_-	adenylate kinase	NA	NA	NA	NA
WP_010931124.1\|1142357_1143122_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA
WP_003812895.1\|1143131_1143320_-	Trm112 family protein	NA	NA	NA	NA
WP_010931123.1\|1143375_1144419_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA
WP_010931122.1\|1144415_1144829_-	biopolymer transporter ExbD	NA	NA	NA	NA
WP_003812889.1\|1144825_1145446_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA
WP_005012067.1\|1145726_1146677_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010931120.1\|1146844_1148236_+	exodeoxyribonuclease VII large subunit	A0A1V0SD82	Indivirus	1.4e-29	32.0
WP_010931119.1\|1148308_1148887_+	superoxide dismutase [Fe]	NA	NA	NA	NA
WP_019247560.1\|1149003_1150401_+	chloride channel protein	NA	NA	NA	NA
WP_010931117.1\|1150516_1151722_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA
WP_003820399.1\|1151821_1152340_-	hypothetical protein	A0A1B1IUW8	uncultured_Mediterranean_phage	5.1e-14	42.2
WP_003812875.1\|1152434_1152680_-	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	1.3e-20	76.6
WP_003820400.1\|1152907_1153222_+\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	1.2e-10	43.8
WP_023853340.1\|1153320_1158501_+	alpha-2-macroglobulin family protein	NA	NA	NA	NA
WP_010931115.1\|1158497_1160666_+	penicillin-binding protein 1C	NA	NA	NA	NA
WP_010931114.1\|1160721_1163037_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	4.1e-164	41.9
WP_003820402.1\|1163041_1164361_+	PqiA/YebS family transporter subunit	NA	NA	NA	NA
WP_014905522.1\|1164379_1166053_+	MCE family protein	NA	NA	NA	NA
WP_010931111.1\|1166057_1166726_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA
WP_010931110.1\|1166882_1170704_+	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_154698391.1\|1170858_1171017_-	hypothetical protein	NA	NA	NA	NA
WP_010930800.1\|1171034_1171985_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_003812857.1\|1172006_1173152_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_003820410.1\|1173300_1174230_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
WP_003812851.1\|1174226_1175315_+	ABC transporter ATP-binding protein	NA	NA	NA	NA
WP_010931109.1\|1175311_1176115_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	7.9e-14	23.5
WP_003812846.1\|1176111_1176843_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.4e-12	31.0
WP_010931108.1\|1176900_1178190_-	MFS transporter	NA	NA	NA	NA
WP_010931107.1\|1178286_1178889_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_003812839.1\|1183442_1183781_-	P-II family nitrogen regulator	NA	NA	NA	NA
WP_010931105.1\|1184488_1184755_+	accessory factor UbiK family protein	NA	NA	NA	NA
WP_005012067.1\|1186461_1187412_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010931103.1\|1187408_1188740_-	MFS transporter	NA	NA	NA	NA
WP_010931102.1\|1190000_1192001_+	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA
WP_003819722.1\|1191993_1192635_+	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA
WP_003809276.1\|1192631_1193039_+	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA
WP_010931101.1\|1193035_1193836_+	SURF1 family protein	NA	NA	NA	NA
WP_010931100.1\|1193910_1194615_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_010931099.1\|1194646_1195441_+	N-formylglutamate deformylase	NA	NA	NA	NA
WP_005013747.1\|1195437_1196388_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_023995489.1\|1196486_1197437_-\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_003812014.1\|1197535_1197970_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA
WP_010931098.1\|1198052_1200389_+	heavy metal translocating P-type ATPase	E4ZFI9	Streptococcus_phage	3.2e-124	42.8
WP_010930525.1\|1200580_1201597_+\|transposase	IS110-like element IS1663 family transposase	NA	NA	NA	NA

DBSCAN-SWA_11

1248991 : 1329866

Bacillus_virus(25.0%)

tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010927663.1\|1248991_1249942_+\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_010931070.1\|1249938_1250889_-\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_010931069.1\|1251149_1252178_-	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA
WP_010931068.1\|1252257_1253556_-	TRAP transporter large permease	NA	NA	NA	NA
WP_003816847.1\|1253552_1254134_-	TRAP transporter small permease	NA	NA	NA	NA
WP_010931067.1\|1254446_1258493_+	phosphoribosylformylglycinamidine synthase	A9YX36	Burkholderia_phage	6.3e-160	67.4
WP_010931066.1\|1258733_1266395_+	filamentous hemagglutinin N-terminal domain-containing protein	A0A0R6PJK4	Moraxella_phage	7.3e-24	30.9
WP_005012067.1\|1266391_1267342_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010931065.1\|1268481_1268955_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_010931064.1\|1269094_1269715_-	XRE family transcriptional regulator	NA	NA	NA	NA
WP_010931063.1\|1269850_1270651_+	aldolase	NA	NA	NA	NA
WP_003810897.1\|1270705_1271797_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_010931062.1\|1271818_1272262_-	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA
WP_010931061.1\|1272290_1272923_-	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA
WP_003810909.1\|1273033_1273450_+\|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
WP_010931060.1\|1273442_1274135_+	DUF2238 domain-containing protein	NA	NA	NA	NA
WP_010931059.1\|1274241_1274616_+	hypothetical protein	NA	NA	NA	NA
WP_010931058.1\|1274692_1275502_-	IclR family transcriptional regulator	NA	NA	NA	NA
WP_010931057.1\|1275597_1276542_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA
WP_003816577.1\|1276580_1277552_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_003810921.1\|1277642_1278080_-	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA
WP_029443733.1\|1278138_1279020_-	NRDE family protein	NA	NA	NA	NA
WP_010931054.1\|1280023_1280884_+	amidohydrolase	NA	NA	NA	NA
WP_010931053.1\|1280916_1282299_+	FAD-dependent oxidoreductase	A0A2P0ZL82	Lactobacillus_phage	7.9e-30	28.4
WP_010931052.1\|1282295_1283315_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_019247407.1\|1283687_1284182_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_010931051.1\|1284189_1284930_-	IclR family transcriptional regulator	NA	NA	NA	NA
WP_010931050.1\|1285010_1286615_-	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA
WP_010931049.1\|1286654_1287443_-	DeoR family transcriptional regulator	A0A077SK06	Escherichia_phage	2.0e-22	30.4
WP_023995127.1\|1287568_1289734_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.9e-14	28.1
WP_010931047.1\|1290614_1291427_+	carbohydrate ABC transporter permease	NA	NA	NA	NA
WP_004568502.1\|1291439_1291748_+	DUF2160 domain-containing protein	NA	NA	NA	NA
WP_010931046.1\|1291865_1293596_+	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_010931045.1\|1293597_1294800_-	lipoprotein	NA	NA	NA	NA
WP_010931044.1\|1294872_1295541_-	DUF502 domain-containing protein	NA	NA	NA	NA
WP_003810957.1\|1295662_1296130_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_019247521.1\|1296265_1297648_+	D-amino acid dehydrogenase	NA	NA	NA	NA
WP_014486086.1\|1297644_1298769_+	DNA repair exonuclease	NA	NA	NA	NA
WP_010931042.1\|1298765_1301402_+	AAA family ATPase	NA	NA	NA	NA
WP_010931070.1\|1301817_1302768_+\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_010931041.1\|1306514_1307126_-	DUF2239 family protein	NA	NA	NA	NA
WP_003812368.1\|1307348_1308809_+	IMP dehydrogenase	A0A1V0SHK8	Klosneuvirus	1.6e-97	41.3
WP_010931040.1\|1308905_1310498_+	glutamine-hydrolyzing GMP synthase	A0A1V0SH76	Hokovirus	1.0e-17	33.3
WP_019247974.1\|1310851_1311109_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_003816876.1\|1311110_1312451_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA
WP_010931038.1\|1312546_1313236_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_019247976.1\|1313248_1314679_+	MFS transporter	NA	NA	NA	NA
WP_014905903.1\|1316403_1317225_+	IclR family transcriptional regulator	NA	NA	NA	NA
WP_010931036.1\|1317235_1318807_+	amidohydrolase	NA	NA	NA	NA
WP_010931035.1\|1318835_1319813_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_010931034.1\|1319839_1320643_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.7e-30	38.2
WP_010931033.1\|1320639_1321434_+	ABC transporter permease	NA	NA	NA	NA
WP_003816890.1\|1321441_1322677_+	DUF521 domain-containing protein	NA	NA	NA	NA
WP_019247978.1\|1322690_1323104_+	DUF126 domain-containing protein	NA	NA	NA	NA
WP_019247980.1\|1323414_1323732_+	hypothetical protein	NA	NA	NA	NA
WP_005013747.1\|1323853_1324804_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010931031.1\|1325425_1327153_-	sulfate permease	NA	NA	NA	NA
WP_010931030.1\|1327264_1328623_+	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_023853289.1\|1328679_1328898_-	hypothetical protein	NA	NA	NA	NA
WP_005013747.1\|1328915_1329866_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA

DBSCAN-SWA_12

1449261 : 1501409

Salmonella_phage(25.0%)

tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005013747.1\|1449261_1450212_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_023999730.1\|1450229_1450382_+	hypothetical protein	NA	NA	NA	NA
WP_003814065.1\|1450378_1450732_+	cytochrome c	NA	NA	NA	NA
WP_003814063.1\|1450744_1451107_+	cytochrome c	NA	NA	NA	NA
WP_003814061.1\|1451148_1451574_-	DUF1841 family protein	NA	NA	NA	NA
WP_003814059.1\|1451776_1453033_+	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	1.2e-11	64.8
WP_003814057.1\|1453231_1454212_+	hypothetical protein	NA	NA	NA	NA
WP_005015028.1\|1454361_1455603_+	O-antigen ligase family protein	NA	NA	NA	NA
WP_005013747.1\|1455701_1456652_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_003814052.1\|1456660_1457356_-	two-component system response regulator KdpE	NA	NA	NA	NA
WP_003814050.1\|1460177_1460777_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA
WP_010930950.1\|1460787_1462953_-	potassium-transporting ATPase subunit KdpB	M1HBF8	Paramecium_bursaria_Chlorella_virus	1.2e-24	27.1
WP_010930949.1\|1462976_1464761_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA
WP_017685545.1\|1464760_1464850_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA
WP_003814042.1\|1465544_1465817_+	DUF4212 domain-containing protein	NA	NA	NA	NA
WP_003814040.1\|1465816_1467883_+	cation acetate symporter	NA	NA	NA	NA
WP_010929577.1\|1467879_1468830_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_005012067.1\|1468928_1469879_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_005015014.1\|1469994_1470327_-	multidrug transporter	NA	NA	NA	NA
WP_010929073.1\|1470323_1471010_-	hypothetical protein	NA	NA	NA	NA
WP_010930948.1\|1470996_1471956_-	thioredoxin-disulfide reductase	A0A2I2L5E1	Orpheovirus	3.1e-57	40.2
WP_010930947.1\|1471988_1474358_+	DNA translocase FtsK	S5VNE3	Mycobacterium_phage	7.6e-81	48.0
WP_010930946.1\|1474357_1474990_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA
WP_010930945.1\|1475091_1476432_+	replication-associated recombination protein A	G3MBE0	Bacillus_virus	1.6e-75	38.9
WP_010930944.1\|1476478_1477834_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.6e-83	47.5
WP_005014990.1\|1478124_1478361_+	hypothetical protein	NA	NA	NA	NA
WP_003814024.1\|1478548_1478866_-	virulence factor	NA	NA	NA	NA
WP_003814023.1\|1479138_1479654_-	hypothetical protein	T1SAR8	Salmonella_phage	5.1e-06	44.6
WP_003814021.1\|1479924_1480680_-	GGDEF domain-containing protein	NA	NA	NA	NA
WP_019247690.1\|1481018_1481225_+	hypothetical protein	NA	NA	NA	NA
WP_003814020.1\|1481232_1481892_-	NAAT family transporter	NA	NA	NA	NA
WP_010930941.1\|1482186_1484391_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA
WP_010930940.1\|1484501_1485725_-	alcaligin siderophore export MFS transporter Bcr	S4TR35	Salmonella_phage	9.8e-24	29.4
WP_003814017.1\|1485847_1486822_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA
WP_005013753.1\|1486889_1488083_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA
WP_003814016.1\|1488097_1488898_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA
WP_010930939.1\|1488894_1490751_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA
WP_003814014.1\|1490747_1491353_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA
WP_003814013.1\|1491371_1492757_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA
WP_003814012.1\|1493482_1494709_+	transporter	NA	NA	NA	NA
WP_003814011.1\|1494797_1495580_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA
WP_005012067.1\|1495678_1496629_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_003814010.1\|1496655_1497429_+	peroxide stress protein YaaA	NA	NA	NA	NA
WP_003814009.1\|1497440_1498682_+	MFS transporter	NA	NA	NA	NA
WP_076879548.1\|1500458_1501409_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA

DBSCAN-SWA_13

1545334 : 1613420

Streptococcus_virus(11.11%)

tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010930416.1\|1545334_1545823_+\|tRNA	Cys-tRNA(Pro) deacylase	NA	NA	NA	NA
WP_019248504.1\|1545940_1546519_+	DJ-1/PfpI family protein	NA	NA	NA	NA
WP_010930418.1\|1546624_1546993_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA
WP_005012067.1\|1547091_1548042_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_023994932.1\|1548048_1549161_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA
WP_010930419.1\|1549847_1551050_+	MFS transporter	NA	NA	NA	NA
WP_010930420.1\|1551253_1553914_+	hypothetical protein	NA	NA	NA	NA
WP_010930421.1\|1553926_1557331_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA
WP_023995689.1\|1557998_1560224_+	DNA polymerase III subunit gamma/tau	A0A1U9WR94	Streptococcus_virus	1.2e-43	38.5
WP_010930423.1\|1560270_1560597_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA
WP_010930424.1\|1560647_1561256_+	recombination protein RecR	NA	NA	NA	NA
WP_005013747.1\|1561354_1562305_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010930425.1\|1562374_1563139_-	hypothetical protein	NA	NA	NA	NA
WP_033446226.1\|1563135_1563672_-	hypothetical protein	NA	NA	NA	NA
WP_010930427.1\|1563838_1564690_-	membrane protein	A0A1I9SA48	Rhodococcus_phage	7.0e-37	35.3
WP_010928449.1\|1564749_1565376_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA
WP_005012067.1\|1565372_1566323_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_019249265.1\|1566421_1567534_-	DUF1513 domain-containing protein	NA	NA	NA	NA
WP_019248041.1\|1567523_1568525_-	imelysin family protein	NA	NA	NA	NA
WP_019247498.1\|1568630_1570142_-	c-type cytochrome	NA	NA	NA	NA
WP_023853587.1\|1570138_1571443_-	imelysin	NA	NA	NA	NA
WP_010930431.1\|1571554_1572115_-	membrane protein	NA	NA	NA	NA
WP_010930432.1\|1572382_1572937_+	NAD(P)H-dependent oxidoreductase	A0A2P0ZL82	Lactobacillus_phage	1.7e-15	32.0
WP_010930433.1\|1573392_1573608_-	dodecin domain-containing protein	NA	NA	NA	NA
WP_033446228.1\|1573862_1576460_+	DNA mismatch repair protein MutS	A0A1V0SDQ0	Indivirus	1.5e-21	22.6
WP_010930435.1\|1576456_1577644_+	cupin	NA	NA	NA	NA
WP_019248658.1\|1578302_1578917_+	fimbrial protein	NA	NA	NA	NA
WP_023994740.1\|1579005_1580127_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA
WP_033446216.1\|1580144_1581050_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA
WP_005012067.1\|1581942_1582893_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010930439.1\|1583074_1583827_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA
WP_003811112.1\|1583895_1584555_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA
WP_003811113.1\|1584551_1585280_+	glutamine ABC transporter ATP-binding protein GlnQ	G9BWD6	Planktothrix_phage	3.3e-35	39.3
WP_010930440.1\|1585292_1587572_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	A0A1B1IUF0	uncultured_Mediterranean_phage	5.9e-06	32.1
WP_010930441.1\|1587596_1587800_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA
WP_010930442.1\|1587841_1588474_-	guanylate kinase	A0A218KC48	Bacillus_phage	2.4e-13	33.9
WP_010930443.1\|1588609_1589527_-	c-type cytochrome	NA	NA	NA	NA
WP_010930444.1\|1589523_1590237_-	c-type cytochrome	NA	NA	NA	NA
WP_003811135.1\|1590474_1591245_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_003811137.1\|1591249_1591849_-	C40 family peptidase	A0A0A8WF62	Clostridium_phage	1.4e-20	41.6
WP_003811138.1\|1592093_1593584_+	AMP nucleosidase	NA	NA	NA	NA
WP_010926696.1\|1593642_1593927_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_003811148.1\|1594492_1595419_-	YicC family protein	NA	NA	NA	NA
WP_003811149.1\|1595555_1596296_+	ribonuclease PH	NA	NA	NA	NA
WP_010930446.1\|1596462_1597839_-	MmgE/PrpD family protein	NA	NA	NA	NA
WP_003811152.1\|1598020_1598926_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_010930448.1\|1600577_1602380_-	EAL domain-containing protein	NA	NA	NA	NA
WP_003811159.1\|1602497_1603148_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA
WP_005012808.1\|1603246_1604197_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010930450.1\|1604218_1605439_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA
WP_003811164.1\|1605624_1607037_+	type I glutamate--ammonia ligase	NA	NA	NA	NA
WP_003811167.1\|1607100_1608168_+	PAS domain-containing protein	Q8QKV7	Ectocarpus_siliculosus_virus	1.1e-05	23.5
WP_010930451.1\|1608167_1609655_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA
WP_010930452.1\|1609664_1610609_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_003811176.1\|1610768_1611467_+	pirin family protein	NA	NA	NA	NA
WP_010930453.1\|1611544_1612450_+	pirin family protein	NA	NA	NA	NA
WP_005012067.1\|1612469_1613420_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA

DBSCAN-SWA_14

1649387 : 1704978

Brazilian_cedratvirus(25.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005013747.1\|1649387_1650338_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010930486.1\|1650396_1651170_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_014486074.1\|1651162_1652719_+	LTA synthase family protein	NA	NA	NA	NA
WP_005013747.1\|1652715_1653666_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_003810741.1\|1654992_1655595_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_003810743.1\|1655834_1656536_-	ABC transporter ATP-binding protein	NA	NA	NA	NA
WP_077093439.1\|1656529_1657312_-	ABC transporter ATP-binding protein	A0A2R8FG22	Brazilian_cedratvirus	9.7e-09	25.3
WP_005012808.1\|1657496_1658447_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010930483.1\|1658545_1659283_-	TerC family protein	A0A0S4KZH7	Pseudomonas_phage	4.1e-41	46.6
WP_010926609.1\|1659472_1660231_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_010930482.1\|1660277_1661267_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_010930481.1\|1661444_1662413_-	transporter	NA	NA	NA	NA
WP_010930480.1\|1663952_1664921_+	AAA family ATPase	NA	NA	NA	NA
WP_010930479.1\|1664929_1665871_+	DUF58 domain-containing protein	NA	NA	NA	NA
WP_010930478.1\|1666344_1667355_+	VWA domain-containing protein	NA	NA	NA	NA
WP_010930477.1\|1667345_1668860_+	VWA domain-containing protein	NA	NA	NA	NA
WP_010930476.1\|1668856_1670203_+	hypothetical protein	NA	NA	NA	NA
WP_010930475.1\|1670205_1671240_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA
WP_023852967.1\|1671289_1672915_+	arylsulfatase	A0A2P0VMN7	Tetraselmis_virus	2.0e-149	52.2
WP_005012067.1\|1673467_1674418_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010930487.1\|1674522_1675470_+	hypothetical protein	NA	NA	NA	NA
WP_019247865.1\|1675523_1677338_-	sensor histidine kinase	NA	NA	NA	NA
WP_010930489.1\|1677330_1678005_-	response regulator transcription factor	NA	NA	NA	NA
WP_023995112.1\|1678134_1681209_+	autotransporter SphB2	NA	NA	NA	NA
WP_019247905.1\|1681222_1681522_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_010930492.1\|1681836_1682460_-	glutathione S-transferase	NA	NA	NA	NA
WP_010930493.1\|1682703_1683573_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA
WP_010930494.1\|1683550_1684495_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_019247909.1\|1684580_1685507_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_019247910.1\|1685619_1686399_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_010930497.1\|1686389_1687586_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA
WP_010930498.1\|1687616_1688567_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA
WP_010930499.1\|1688788_1689478_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_010930500.1\|1689542_1690298_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_010930501.1\|1690349_1691342_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_010930502.1\|1691351_1692305_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_003811538.1\|1692420_1693383_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_019249376.1\|1694784_1695213_+	hypothetical protein	NA	NA	NA	NA
WP_005013747.1\|1695209_1696160_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010930503.1\|1696453_1697176_-	arsenical resistance protein ArsH	A0A2H4J5V6	uncultured_Caudovirales_phage	1.3e-87	68.2
WP_010930504.1\|1697614_1698802_-	MFS transporter	NA	NA	NA	NA
WP_010930505.1\|1698805_1699156_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_010930506.1\|1700905_1701877_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_010930507.1\|1701890_1702604_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_010930508.1\|1702608_1703526_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_003811452.1\|1703632_1703929_+	hypothetical protein	NA	NA	NA	NA
WP_010929588.1\|1704027_1704978_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA

DBSCAN-SWA_15

2025146 : 2073161

Moraxella_phage(18.18%)

tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010930522.1\|2025146_2026097_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010930804.1\|2026195_2028796_-	TRAP transporter fused permease subunit	NA	NA	NA	NA
WP_003818658.1\|2028902_2029907_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA
WP_010930803.1\|2030015_2031356_-	aspartate aminotransferase family protein	A0A1V0SKB7	Klosneuvirus	8.8e-18	22.8
WP_003818661.1\|2031396_2032425_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
WP_010930802.1\|2032620_2033166_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_010930801.1\|2033162_2033723_+	diaminobutyrate acetyltransferase	NA	NA	NA	NA
WP_010930048.1\|2033821_2034772_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010930523.1\|2034809_2035397_+	YigZ family protein	A0A1X9I5T8	Streptococcus_phage	4.7e-16	35.8
WP_003811007.1\|2035414_2035798_-	thioredoxin family protein	V9SJ74	Achromobacter_phage	8.1e-09	25.8
WP_003811011.1\|2037157_2038450_-	NCS2 family permease	A0A0R6PHV4	Moraxella_phage	1.7e-66	36.0
WP_010930524.1\|2038584_2039625_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	6.1e-91	51.3
WP_010929632.1\|2039722_2040739_-\|transposase	IS110-like element IS1663 family transposase	NA	NA	NA	NA
WP_023852762.1\|2041006_2041642_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA
WP_010930526.1\|2041779_2042538_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	1.4e-68	51.2
WP_019247478.1\|2042522_2043302_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	4.8e-32	46.9
WP_003811022.1\|2043319_2044204_+	peptidoglycan DD-metalloendopeptidase family protein	A0A292GJG6	Xanthomonas_phage	4.6e-15	49.5
WP_019248494.1\|2044200_2044980_+	3'-5' exonuclease	NA	NA	NA	NA
WP_003816527.1\|2045006_2045684_+	hypothetical protein	NA	NA	NA	NA
WP_010930529.1\|2045972_2046725_+	hypothetical protein	NA	NA	NA	NA
WP_003816525.1\|2046843_2048244_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	A0A2K5B251	Erysipelothrix_phage	7.3e-31	26.5
WP_003816523.1\|2048267_2048666_-	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA
WP_003811035.1\|2048841_2049042_+	heavy-metal-associated domain-containing protein	NA	NA	NA	NA
WP_010930530.1\|2049180_2049909_+	redoxin family protein	A0A1D8KSL1	Synechococcus_phage	9.6e-43	56.8
WP_003816520.1\|2050042_2051458_+	dihydrolipoyl dehydrogenase	NA	NA	NA	NA
WP_003816518.1\|2051461_2052325_-	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA
WP_004568486.1\|2052337_2053087_-	glycerophosphodiester phosphodiesterase	A0A2H4PGQ5	Escherichia_phage	1.5e-14	27.8
WP_010930531.1\|2053329_2055285_+	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA
WP_019247882.1\|2055266_2055935_-	arylesterase	NA	NA	NA	NA
WP_005012067.1\|2056709_2057660_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_005012067.1\|2057758_2058709_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_003813572.1\|2058857_2059196_-	BON domain-containing protein	NA	NA	NA	NA
WP_003813570.1\|2059253_2059415_-	DUF1328 domain-containing protein	NA	NA	NA	NA
WP_003813568.1\|2059446_2059647_-	CsbD family protein	NA	NA	NA	NA
WP_010930533.1\|2059912_2062486_-	cyanophycin synthetase	NA	NA	NA	NA
WP_019247811.1\|2062556_2065106_-	cyanophycin synthetase	NA	NA	NA	NA
WP_010930535.1\|2067656_2068145_+	DUF1854 domain-containing protein	NA	NA	NA	NA
WP_029443743.1\|2068236_2069388_-	N-acetyltransferase	NA	NA	NA	NA
WP_004566336.1\|2069441_2070263_+	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_010930537.1\|2070301_2071531_+	lytic murein transglycosylase	NA	NA	NA	NA
WP_004566334.1\|2071659_2072100_+	DUF937 domain-containing protein	NA	NA	NA	NA
WP_005012808.1\|2072210_2073161_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA

DBSCAN-SWA_16

2134723 : 2193993

Klosneuvirus(40.0%)

tRNA,protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005013747.1\|2134723_2135674_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010930573.1\|2135798_2136608_-	enoyl-CoA hydratase	NA	NA	NA	NA
WP_010929577.1\|2136808_2137759_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010930574.1\|2139032_2140250_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA
WP_003818670.1\|2141306_2142209_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_010930576.1\|2142285_2143158_+	MOSC domain-containing protein	NA	NA	NA	NA
WP_003818672.1\|2143288_2143657_+	aspartate 1-decarboxylase	NA	NA	NA	NA
WP_010930577.1\|2143714_2144761_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA
WP_010930578.1\|2144956_2146213_+	D-amino acid dehydrogenase	NA	NA	NA	NA
WP_003810623.1\|2146217_2147555_+	extracellular solute-binding protein	NA	NA	NA	NA
WP_003818676.1\|2147704_2148661_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_019247555.1\|2148763_2149696_-	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA
WP_019247554.1\|2149811_2150132_+	hypothetical protein	NA	NA	NA	NA
WP_019247553.1\|2150124_2150484_+	hypothetical protein	NA	NA	NA	NA
WP_010930581.1\|2150531_2152106_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_003810637.1\|2152158_2153103_+	ABC transporter permease	NA	NA	NA	NA
WP_010930582.1\|2153120_2153951_+	ABC transporter permease	NA	NA	NA	NA
WP_010930583.1\|2153943_2155578_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	8.2e-18	32.7
WP_010930584.1\|2155574_2156930_+	amidase	NA	NA	NA	NA
WP_010930585.1\|2157836_2159414_+	lipoprotein	NA	NA	NA	NA
WP_010930586.1\|2159417_2160692_+	type 4b pilus protein PilO2	NA	NA	NA	NA
WP_010930587.1\|2160789_2161164_+	hypothetical protein	NA	NA	NA	NA
WP_010930588.1\|2162879_2164013_+	general secretion pathway protein	NA	NA	NA	NA
WP_003810661.1\|2164050_2164656_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA
WP_010930589.1\|2164652_2165471_+	hypothetical protein	NA	NA	NA	NA
WP_010930590.1\|2165542_2168167_+\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	1.7e-81	39.4
WP_004568544.1\|2168153_2168408_+	sulfurtransferase TusA family protein	NA	NA	NA	NA
WP_010930591.1\|2168474_2169056_-	hypothetical protein	NA	NA	NA	NA
WP_010926757.1\|2169359_2169620_+	30S ribosomal protein S16	NA	NA	NA	NA
WP_014905757.1\|2169785_2170409_+	ribosome maturation factor RimM	NA	NA	NA	NA
WP_003816734.1\|2170408_2171182_+\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
WP_010930593.1\|2171178_2172387_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA
WP_010930594.1\|2172412_2172886_-	RidA family protein	NA	NA	NA	NA
WP_010930048.1\|2172959_2173910_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_076879566.1\|2174008_2174959_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010930796.1\|2175057_2176407_-	two-component sensor histidine kinase	NA	NA	NA	NA
WP_023852900.1\|2177172_2177928_+	MipA/OmpV family protein	NA	NA	NA	NA
WP_010930794.1\|2178020_2180903_-\|tRNA	valine--tRNA ligase	A0A1V0SK04	Klosneuvirus	3.7e-138	37.1
WP_003810689.1\|2181225_2181651_+	nucleoside-diphosphate kinase	D2E8E1	Anguillid_herpesvirus	2.1e-21	43.2
WP_004568542.1\|2181678_2182827_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA
WP_003810693.1\|2182823_2183330_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_033446257.1\|2183345_2184632_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA
WP_033446258.1\|2184681_2185977_+\|tRNA	histidine--tRNA ligase	NA	NA	NA	NA
WP_010930791.1\|2185978_2186617_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_023852925.1\|2186622_2187780_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA
WP_003810703.1\|2187806_2189162_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA
WP_010930790.1\|2189165_2190236_+	histidinol-phosphate transaminase	A0A1X6WGT4	Pacmanvirus	2.5e-15	25.7
WP_003810707.1\|2190374_2190611_+	RNA chaperone Hfq	NA	NA	NA	NA
WP_010930789.1\|2190698_2191805_+	GTPase HflX	NA	NA	NA	NA
WP_010930788.1\|2191770_2193075_+\|protease	FtsH protease activity modulator HflK	NA	NA	NA	NA
WP_010930787.1\|2193093_2193993_+\|protease	protease modulator HflC	NA	NA	NA	NA

DBSCAN-SWA_17

2204233 : 2262775

Staphylococcus_phage(16.67%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005013747.1\|2204233_2205184_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010930782.1\|2206428_2207514_+	AI-2E family transporter	NA	NA	NA	NA
WP_003810400.1\|2207529_2208291_-	ABC transporter permease	NA	NA	NA	NA
WP_010930781.1\|2208287_2209211_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.6e-23	33.6
WP_019248115.1\|2209309_2209834_-	N-acetyltransferase	NA	NA	NA	NA
WP_010930779.1\|2209842_2210586_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA
WP_010930778.1\|2210681_2210921_-	membrane protein	NA	NA	NA	NA
WP_010930777.1\|2210934_2211087_-	lipoprotein	NA	NA	NA	NA
WP_010930776.1\|2211172_2212663_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA
WP_010930775.1\|2212754_2213693_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA
WP_003818560.1\|2213689_2213866_-	cytochrome oxidase	NA	NA	NA	NA
WP_003810383.1\|2213868_2214531_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA
WP_003810379.1\|2216152_2216296_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA
WP_010930774.1\|2216292_2217267_-	membrane protein	NA	NA	NA	NA
WP_162268682.1\|2217161_2217416_-	hypothetical protein	NA	NA	NA	NA
WP_005012067.1\|2217433_2218384_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010930773.1\|2218380_2219655_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	A0A1V0SKB7	Klosneuvirus	9.6e-14	28.9
WP_010930772.1\|2219758_2220952_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA
WP_010930771.1\|2220948_2221602_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_010930770.1\|2221598_2223035_+	dethiobiotin synthase	NA	NA	NA	NA
WP_010930769.1\|2223022_2223382_+	CidA/LrgA family protein	NA	NA	NA	NA
WP_162268681.1\|2224196_2224337_-	hypothetical protein	NA	NA	NA	NA
WP_005012067.1\|2224354_2225305_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010930768.1\|2226350_2228216_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA
WP_010930767.1\|2228473_2229994_+	aldehyde dehydrogenase	NA	NA	NA	NA
WP_003816959.1\|2230081_2230732_-	flavodoxin family protein	NA	NA	NA	NA
WP_010930766.1\|2231680_2232976_+	DUF445 domain-containing protein	NA	NA	NA	NA
WP_010930765.1\|2232997_2233882_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_010930764.1\|2233980_2234856_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA
WP_003816964.1\|2234845_2235202_-	DUF1428 domain-containing protein	NA	NA	NA	NA
WP_010930763.1\|2235332_2236307_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_003812228.1\|2236436_2236616_-	DUF3008 family protein	NA	NA	NA	NA
WP_029443822.1\|2236713_2237238_+	DUF302 domain-containing protein	NA	NA	NA	NA
WP_010930761.1\|2237248_2238085_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_003816971.1\|2238197_2238569_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_010930760.1\|2238565_2239117_+	SRPBCC family protein	NA	NA	NA	NA
WP_003816975.1\|2239132_2240824_-	STAS domain-containing protein	A0A2H4J153	uncultured_Caudovirales_phage	5.0e-42	27.3
WP_003816977.1\|2240872_2241553_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_014905663.1\|2241800_2242265_-	hypothetical protein	NA	NA	NA	NA
WP_010930758.1\|2242434_2243364_+	ZIP family metal transporter	NA	NA	NA	NA
WP_019247659.1\|2243376_2244024_-	hypothetical protein	NA	NA	NA	NA
WP_023997035.1\|2244097_2245915_-	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	2.3e-37	27.4
WP_005012067.1\|2245998_2246949_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010929577.1\|2247601_2248552_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_003812199.1\|2248570_2248918_-	GFA family protein	NA	NA	NA	NA
WP_010930755.1\|2248946_2250386_-	MFS transporter	A0A0M3UL24	Mycobacterium_phage	7.4e-55	37.4
WP_010930754.1\|2250404_2250800_-	VOC family protein	NA	NA	NA	NA
WP_003812191.1\|2250974_2251583_+	peptidase S16	NA	NA	NA	NA
WP_010930753.1\|2251595_2252414_+	hypothetical protein	A0A1B1INV8	uncultured_Mediterranean_phage	2.3e-16	28.8
WP_010930752.1\|2252365_2253340_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_003812183.1\|2253368_2254430_-	XdhC family protein	NA	NA	NA	NA
WP_010930751.1\|2254426_2256643_-	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA
WP_010930750.1\|2256656_2257115_-	(2Fe-2S)-binding protein	NA	NA	NA	NA
WP_003812179.1\|2257272_2257617_-	exported protein	NA	NA	NA	NA
WP_010930749.1\|2257773_2258679_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_010930748.1\|2258765_2259779_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA
WP_010930525.1\|2261758_2262775_+\|transposase	IS110-like element IS1663 family transposase	NA	NA	NA	NA

DBSCAN-SWA_18

2278325 : 2342694

Vibrio_phage(20.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005013747.1\|2278325_2279276_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_005015810.1\|2279497_2280448_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_023852887.1\|2280546_2281512_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_010930740.1\|2281649_2282549_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_010930739.1\|2285143_2286631_+	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA
WP_014486081.1\|2286641_2287838_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA
WP_003816680.1\|2287910_2289230_+	AMP-binding protein	NA	NA	NA	NA
WP_010930737.1\|2289226_2290102_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_010930736.1\|2290132_2291281_-	CoA transferase	NA	NA	NA	NA
WP_010930735.1\|2291298_2291613_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA
WP_003816687.1\|2291634_2292357_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_003816690.1\|2292356_2293175_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA
WP_003816691.1\|2293179_2293707_-	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA
WP_010930733.1\|2293712_2294969_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA
WP_010930732.1\|2295327_2296467_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_010930731.1\|2296544_2297417_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
WP_010930730.1\|2298287_2299238_+\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_010930729.1\|2299197_2299833_-	membrane protein	NA	NA	NA	NA
WP_010930728.1\|2300192_2301515_-	isocitrate lyase	NA	NA	NA	NA
WP_010930727.1\|2301833_2302655_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	A0A2I7SAX1	Vibrio_phage	4.1e-42	37.6
WP_003810356.1\|2304079_2304652_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA
WP_010930726.1\|2304691_2306521_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA
WP_010930725.1\|2306483_2307542_-	beta-N-acetylhexosaminidase	NA	NA	NA	NA
WP_010930724.1\|2307579_2308041_-	holo-ACP synthase	NA	NA	NA	NA
WP_003810344.1\|2308125_2308872_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA
WP_019247651.1\|2310362_2313593_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA
WP_019248531.1\|2313659_2314991_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_010930721.1\|2315243_2315618_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_010930720.1\|2315720_2316899_-	patatin-like phospholipase family protein	NA	NA	NA	NA
WP_003810329.1\|2316909_2317500_-	DUF4136 domain-containing protein	NA	NA	NA	NA
WP_003818535.1\|2317610_2318417_+	TOBE domain-containing protein	NA	NA	NA	NA
WP_010930719.1\|2318442_2319237_-	ABC transporter ATP-binding protein	A0A1V0SE00	Indivirus	5.1e-05	25.7
WP_010930718.1\|2320237_2321212_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_003818533.1\|2321370_2321883_-	superoxide dismutase family protein	Q9MC02	Salmonella_phage	1.8e-43	52.3
WP_003818532.1\|2322039_2323011_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_010930717.1\|2324755_2325562_-	enoyl-CoA hydratase	NA	NA	NA	NA
WP_010930716.1\|2325558_2326860_-	malonyl-CoA decarboxylase	NA	NA	NA	NA
WP_010930715.1\|2326810_2327575_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_010930714.1\|2327688_2328459_-	spermidine synthase	NA	NA	NA	NA
WP_010930713.1\|2328543_2329731_-	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA
WP_003818524.1\|2329803_2330178_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA
WP_003810308.1\|2330278_2331541_-	glycine betaine/L-proline ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	6.8e-28	36.6
WP_003810306.1\|2331537_2332395_-	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA
WP_003818523.1\|2332567_2333569_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_010929591.1\|2334020_2334971_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_033446265.1\|2336534_2337686_+	multidrug effflux MFS transporter	NA	NA	NA	NA
WP_003810297.1\|2338054_2338291_+	50S ribosomal protein L28	NA	NA	NA	NA
WP_010930711.1\|2338354_2338522_+	50S ribosomal protein L33	NA	NA	NA	NA
WP_023853105.1\|2338635_2340531_-	STAS domain-containing protein	A0A2H4J153	uncultured_Caudovirales_phage	2.3e-19	27.5
WP_062826579.1\|2340694_2341645_-\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_010931070.1\|2341743_2342694_-\|transposase	IS481 family transposase	NA	NA	NA	NA

DBSCAN-SWA_19

2507150 : 2562630

Planktothrix_phage(40.0%)

tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005012067.1\|2507150_2508101_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010930388.1\|2508580_2509237_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA
WP_010930387.1\|2509251_2510919_-	TRAP transporter large permease subunit	NA	NA	NA	NA
WP_010930386.1\|2510921_2511551_-	TRAP transporter small permease subunit	NA	NA	NA	NA
WP_014486072.1\|2511762_2512857_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA
WP_010930384.1\|2513001_2513814_-\|tRNA	tRNA pseudouridine(38-40) synthase TruA	NA	NA	NA	NA
WP_010930383.1\|2513817_2515401_-	membrane protein	NA	NA	NA	NA
WP_010930382.1\|2515571_2516702_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_010930381.1\|2516888_2517965_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA
WP_010930380.1\|2518046_2518697_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA
WP_010930379.1\|2518711_2520115_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA
WP_004567445.1\|2520398_2521217_-	solute-binding protein	NA	NA	NA	NA
WP_010930378.1\|2521213_2521918_-	phosphate ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.6e-13	30.0
WP_010930377.1\|2522817_2523933_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_004567447.1\|2523966_2524341_-	hypothetical protein	NA	NA	NA	NA
WP_010930376.1\|2524363_2525521_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA
WP_003812666.1\|2525533_2525767_-	lipoprotein	NA	NA	NA	NA
WP_019247523.1\|2526401_2529371_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA
WP_023853518.1\|2529385_2529595_-	hypothetical protein	NA	NA	NA	NA
WP_019248667.1\|2529746_2530376_-	hypothetical protein	NA	NA	NA	NA
WP_023994978.1\|2530372_2532430_-	4Fe-4S binding protein	NA	NA	NA	NA
WP_010930372.1\|2532486_2533167_-	DUF3306 domain-containing protein	NA	NA	NA	NA
WP_003820494.1\|2533163_2533724_-	DUF3305 domain-containing protein	NA	NA	NA	NA
WP_004567450.1\|2533730_2534828_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA
WP_010930371.1\|2534980_2535574_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA
WP_010930370.1\|2535570_2536863_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA
WP_003812685.1\|2536876_2537419_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA
WP_010930369.1\|2537428_2538265_-	M48 family metallopeptidase	NA	NA	NA	NA
WP_003820487.1\|2538298_2539360_-	chorismate synthase	A0A291AU41	Pandoravirus	2.9e-80	42.8
WP_019247210.1\|2539401_2540454_-	EAL domain-containing protein	NA	NA	NA	NA
WP_019247209.1\|2540469_2540772_-	hypothetical protein	NA	NA	NA	NA
WP_005012808.1\|2540913_2541864_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_162268680.1\|2541881_2542046_+	hypothetical protein	NA	NA	NA	NA
WP_010930368.1\|2542042_2543737_+	iron ABC transporter permease	NA	NA	NA	NA
WP_003809599.1\|2543733_2544819_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	6.4e-27	37.7
WP_010930367.1\|2544866_2545766_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_003809593.1\|2545776_2546421_+	histidine phosphatase family protein	NA	NA	NA	NA
WP_010930366.1\|2547442_2550685_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA
WP_023852833.1\|2550695_2551850_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	R4TGJ8	Halovirus	3.3e-53	35.4
WP_010930364.1\|2552076_2553039_+	transaldolase	H6WFR1	Cyanophage	7.5e-11	29.2
WP_076879624.1\|2553137_2554088_+\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_010930363.1\|2554186_2555137_+\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_010930362.1\|2555146_2555836_-	VIT family protein	NA	NA	NA	NA
WP_003811741.1\|2555895_2556333_-	PaaI family thioesterase	NA	NA	NA	NA
WP_003811743.1\|2556378_2557272_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA
WP_010930742.1\|2557421_2558372_+\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_003811746.1\|2558368_2559541_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA
WP_003811748.1\|2559537_2560692_-	acyl-CoA dehydrogenase	NA	NA	NA	NA
WP_003811750.1\|2560888_2561239_-	RnfH family protein	NA	NA	NA	NA
WP_003811752.1\|2561228_2561663_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA
WP_010930800.1\|2561679_2562630_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA

DBSCAN-SWA_20

2608723 : 2675205

uncultured_Caudovirales_phage(40.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005012067.1\|2608723_2609674_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_003811850.1\|2610043_2610616_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA
WP_003811852.1\|2610618_2611629_+	flagellar motor switch protein FliM	NA	NA	NA	NA
WP_010930335.1\|2611621_2612122_+	flagellar motor switch protein FliN	NA	NA	NA	NA
WP_003811855.1\|2612132_2612474_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA
WP_010930334.1\|2612542_2613277_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA
WP_003811859.1\|2613293_2613563_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA
WP_010930333.1\|2613585_2614374_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA
WP_010929632.1\|2614420_2615437_-\|transposase	IS110-like element IS1663 family transposase	NA	NA	NA	NA
WP_014486070.1\|2615635_2617078_-	PAS domain-containing protein	A0A1B0V854	Salmonella_phage	1.0e-35	41.8
WP_010930332.1\|2617256_2618876_-	HAMP domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	1.5e-08	45.3
WP_010930331.1\|2618996_2620817_-	HAMP domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	6.4e-11	52.6
WP_010930330.1\|2620895_2622428_-	flagellar hook-associated protein 3	NA	NA	NA	NA
WP_010930329.1\|2622461_2624108_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA
WP_010930328.1\|2624177_2625200_-	flagellar assembly peptidoglycan hydrolase FlgJ	A0A088F6W1	Sulfitobacter_phage	1.9e-12	31.4
WP_010930327.1\|2625217_2626351_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA
WP_010930326.1\|2626353_2627043_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA
WP_010930325.1\|2627042_2627828_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA
WP_003817181.1\|2627871_2628636_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA
WP_003817180.1\|2628674_2630096_-	flagellar hook-basal body complex protein	NA	NA	NA	NA
WP_010930324.1\|2630161_2630866_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA
WP_003817176.1\|2630913_2631333_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA
WP_010930323.1\|2631345_2631753_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA
WP_010930322.1\|2631936_2632647_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA
WP_003817172.1\|2632773_2633064_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA
WP_003817170.1\|2633081_2633564_+	flagellar protein FlgN	NA	NA	NA	NA
WP_010930321.1\|2638069_2639224_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA
WP_010931363.1\|2639529_2640546_+\|transposase	IS110-like element IS1663 family transposase	NA	NA	NA	NA
WP_010930319.1\|2640792_2641581_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_003812020.1\|2641647_2642328_+	amino acid ABC transporter permease	NA	NA	NA	NA
WP_003812022.1\|2642324_2643095_+	amino acid ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	9.8e-30	39.1
WP_010930208.1\|2643193_2644144_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_003811401.1\|2644199_2645117_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA
WP_003811400.1\|2645127_2646306_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA
WP_010930318.1\|2646325_2647321_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_003811396.1\|2648909_2649518_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA
WP_003811393.1\|2649505_2650546_+	LacI family transcriptional regulator	NA	NA	NA	NA
WP_003811391.1\|2650563_2651526_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_003811389.1\|2651522_2652716_-	CoA transferase	NA	NA	NA	NA
WP_010930317.1\|2652712_2653510_-	citryl-CoA lyase	NA	NA	NA	NA
WP_014486069.1\|2653535_2654522_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_010930316.1\|2654540_2656580_-	acetyl-CoA synthetase	NA	NA	NA	NA
WP_010930315.1\|2656781_2657462_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_010930314.1\|2657475_2658387_-	CoA ester lyase	NA	NA	NA	NA
WP_003811381.1\|2658383_2658962_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA
WP_010930313.1\|2659100_2660006_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_010930312.1\|2660013_2663433_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA
WP_010930311.1\|2663420_2666021_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA
WP_003811375.1\|2666976_2667609_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_003811372.1\|2668002_2668761_+	hypothetical protein	NA	NA	NA	NA
WP_003811370.1\|2668757_2669960_+	cardiolipin synthase ClsB	NA	NA	NA	NA
WP_010930208.1\|2670147_2671098_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010930310.1\|2672005_2673151_+	DUF3182 family protein	NA	NA	NA	NA
WP_019247449.1\|2673137_2673893_+	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_003811361.1\|2674009_2674189_+	hypothetical protein	NA	NA	NA	NA
WP_010930208.1\|2674254_2675205_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA

DBSCAN-SWA_21

2837770 : 2903353

Oenococcus_phage(33.33%)

tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_023853639.1\|2837770_2838721_-\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_076879566.1\|2838819_2839770_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_023852977.1\|2839787_2839976_+	hypothetical protein	NA	NA	NA	NA
WP_010930231.1\|2839972_2840962_+	succinylglutamate desuccinylase	NA	NA	NA	NA
WP_010930230.1\|2841045_2841399_+	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA
WP_010930229.1\|2841476_2842085_-	hypothetical protein	NA	NA	NA	NA
WP_003811662.1\|2843758_2844337_-	amino acid synthesis family protein	NA	NA	NA	NA
WP_003811660.1\|2844361_2845315_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_010930228.1\|2845354_2846272_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_033446252.1\|2846393_2847320_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_010930226.1\|2847327_2848074_-	aldolase	NA	NA	NA	NA
WP_010930225.1\|2848400_2849342_+	LD-carboxypeptidase	NA	NA	NA	NA
WP_010930224.1\|2849568_2851266_-	sodium:solute symporter family protein	NA	NA	NA	NA
WP_010930223.1\|2851700_2853122_-	MFS transporter	NA	NA	NA	NA
WP_010930222.1\|2853275_2854055_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_019247966.1\|2854179_2855058_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_010930220.1\|2855163_2856288_+	mandelate racemase/muconate lactonizing enzyme family protein	Q6A202	Oenococcus_phage	1.5e-31	28.3
WP_003811636.1\|2856333_2857296_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_010930219.1\|2857288_2858143_+	amidohydrolase family protein	NA	NA	NA	NA
WP_003811632.1\|2858250_2858661_+	VOC family protein	NA	NA	NA	NA
WP_010929956.1\|2858657_2859608_-\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_003813574.1\|2859706_2860588_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA
WP_003821443.1\|2860665_2862045_-	4Fe-4S binding protein	NA	NA	NA	NA
WP_010930218.1\|2862083_2862929_-	membrane protein	NA	NA	NA	NA
WP_033451623.1\|2862944_2863259_-	cupredoxin domain-containing protein	NA	NA	NA	NA
WP_010930217.1\|2863291_2863828_-	membrane protein	NA	NA	NA	NA
WP_003813585.1\|2864000_2864576_-	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA
WP_003813586.1\|2864678_2865416_-	acetoacetyl-CoA reductase	NA	NA	NA	NA
WP_010930216.1\|2865483_2867121_-	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA
WP_019247742.1\|2867228_2867984_-	peptidoglycan editing factor PgeF	NA	NA	NA	NA
WP_010930214.1\|2867971_2868934_-	RluA family pseudouridine synthase	NA	NA	NA	NA
WP_033446255.1\|2869041_2869836_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA
WP_010930213.1\|2869897_2871973_-	ATP-dependent DNA helicase	A0A127AW80	Bacillus_phage	2.4e-75	30.0
WP_010930212.1\|2872137_2874513_+	RNA-binding transcriptional accessory protein	NA	NA	NA	NA
WP_010930211.1\|2874593_2875949_-\|tRNA	tryptophan--tRNA ligase	NA	NA	NA	NA
WP_003813618.1\|2877427_2878150_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_010930207.1\|2878204_2879188_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_005012067.1\|2879317_2880268_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_003813621.1\|2880264_2881167_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_010930206.1\|2881254_2882013_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_023853245.1\|2882025_2883117_-	cell division protein ZapE	NA	NA	NA	NA
WP_003813626.1\|2883214_2884642_-	dihydrolipoyl dehydrogenase	A0A2K5B2C5	Erysipelothrix_phage	2.1e-41	28.1
WP_010930204.1\|2884871_2886086_-	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA
WP_003813631.1\|2886131_2889002_-	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA
WP_010930202.1\|2891412_2891901_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
WP_010930201.1\|2892026_2894723_+	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA
WP_010930200.1\|2894877_2897160_+	NADP-dependent malic enzyme	NA	NA	NA	NA
WP_010930199.1\|2897323_2897956_+	fimbrial protein	NA	NA	NA	NA
WP_010930198.1\|2898054_2899005_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_003812405.1\|2899051_2899606_-	transcription elongation factor GreB	NA	NA	NA	NA
WP_003816844.1\|2899673_2900519_-	PHP domain-containing protein	NA	NA	NA	NA
WP_019248398.1\|2900588_2901557_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_023853221.1\|2901556_2903353_-\|transposase	IS481 family transposase	NA	NA	NA	NA

DBSCAN-SWA_22

2920923 : 2977082

Catovirus(22.22%)

tRNA,transposase,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010930190.1\|2920923_2922444_+\|tRNA	lysine--tRNA ligase	A0A1V0SAC0	Catovirus	1.2e-82	36.0
WP_010930189.1\|2922486_2922789_+	membrane protein	NA	NA	NA	NA
WP_003812436.1\|2922785_2923418_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_010930188.1\|2923496_2925362_-	long-chain fatty acid--CoA ligase	A0A1V0SBX8	Catovirus	9.3e-50	23.3
WP_020699602.1\|2925358_2926153_-	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	1.2e-11	23.3
WP_010930186.1\|2926181_2927297_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_010930185.1\|2928201_2929080_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
WP_010930184.1\|2929079_2929904_-	ABC transporter ATP-binding protein	A0A2R8FG22	Brazilian_cedratvirus	1.0e-08	22.7
WP_010929591.1\|2930071_2931022_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010930183.1\|2931234_2934084_+	EAL domain-containing protein	NA	NA	NA	NA
WP_010930182.1\|2934065_2934794_-	response regulator transcription factor	NA	NA	NA	NA
WP_019248549.1\|2934934_2936398_-	YdiU family protein	A0A075BSJ0	Microcystis_phage	1.7e-43	32.5
WP_010930180.1\|2936394_2936766_-	DUF2069 domain-containing protein	NA	NA	NA	NA
WP_003812701.1\|2936783_2938097_+	YihY family inner membrane protein	NA	NA	NA	NA
WP_003812703.1\|2938133_2938592_+	CBS domain-containing protein	NA	NA	NA	NA
WP_155120815.1\|2938546_2938687_-	hypothetical protein	NA	NA	NA	NA
WP_005012067.1\|2938704_2939655_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010930178.1\|2939651_2940665_-\|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	NA	NA	NA	NA
WP_003812707.1\|2940804_2941791_+	homoserine kinase	NA	NA	NA	NA
WP_161633091.1\|2942149_2942857_-	DUF192 domain-containing protein	NA	NA	NA	NA
WP_077093446.1\|2943437_2944388_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_003809618.1\|2944539_2945142_-	YhbY family RNA-binding protein	NA	NA	NA	NA
WP_010930175.1\|2945160_2945793_+	RlmE family RNA methyltransferase	NA	NA	NA	NA
WP_162096758.1\|2945837_2946089_-	hypothetical protein	NA	NA	NA	NA
WP_010930174.1\|2946030_2947917_+	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	M4QMW8	Micromonas_pusilla_virus	1.4e-109	41.5
WP_010930173.1\|2947935_2948778_+	dihydropteroate synthase	A0A0B5J4J5	Pandoravirus	3.2e-26	32.5
WP_003819875.1\|2948774_2950133_+	phosphoglucosamine mutase	NA	NA	NA	NA
WP_003809629.1\|2950353_2951148_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_010930172.1\|2951378_2952872_-	exopolyphosphatase	NA	NA	NA	NA
WP_010930171.1\|2953107_2955189_+	polyphosphate kinase 1	NA	NA	NA	NA
WP_014486066.1\|2955383_2956424_+	phosphate ABC transporter substrate-binding protein PstS	M4QHS4	Cyanophage	2.1e-51	40.2
WP_010930169.1\|2956558_2957575_+	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA
WP_003809638.1\|2957596_2958454_+	phosphate ABC transporter permease PstA	NA	NA	NA	NA
WP_010930167.1\|2958498_2959275_+	phosphate ABC transporter ATP-binding protein PstB	G9BWD6	Planktothrix_phage	4.3e-17	28.7
WP_154698393.1\|2959487_2959625_-	hypothetical protein	NA	NA	NA	NA
WP_005013747.1\|2959642_2960593_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_003809441.1\|2960619_2961084_-	barstar family protein	NA	NA	NA	NA
WP_014486065.1\|2962290_2964579_-	NADP-dependent malic enzyme	NA	NA	NA	NA
WP_010930165.1\|2964695_2965568_-	hypothetical protein	NA	NA	NA	NA
WP_010930164.1\|2965610_2966765_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA
WP_010930163.1\|2966799_2967630_-	lytic transglycosylase domain-containing protein	NA	NA	NA	NA
WP_023853525.1\|2967713_2969258_+	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA
WP_010930161.1\|2969300_2969660_-	hypothetical protein	NA	NA	NA	NA
WP_003819794.1\|2969661_2970075_-\|holin	phage holin family protein	NA	NA	NA	NA
WP_003809432.1\|2970115_2970433_-	DUF883 domain-containing protein	NA	NA	NA	NA
WP_003809431.1\|2970517_2971234_-	hypothetical protein	NA	NA	NA	NA
WP_010930160.1\|2971497_2972919_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA
WP_077093448.1\|2972985_2975733_-	pertactin autotransporter	NA	NA	NA	NA
WP_023853536.1\|2976065_2977082_-\|transposase	IS110-like element IS1663 family transposase	NA	NA	NA	NA

DBSCAN-SWA_23

2985703 : 3058220

Pseudomonas_phage(14.29%)

tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010931363.1\|2985703_2986720_+\|transposase	IS110-like element IS1663 family transposase	NA	NA	NA	NA
WP_015041211.1\|2987657_2989085_+\|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	NA	NA	NA	NA
WP_010930151.1\|2989081_2990104_+	PhoH family protein	A0A0S0MVD6	Pseudomonas_phage	8.7e-50	45.4
WP_003809396.1\|2990093_2990567_+	rRNA maturation RNase YbeY	NA	NA	NA	NA
WP_010930149.1\|2990707_2991595_+	CBS domain-containing protein	NA	NA	NA	NA
WP_014486064.1\|2991591_2993235_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA
WP_003819773.1\|2993231_2994239_-	aldo/keto reductase	NA	NA	NA	NA
WP_010931363.1\|2995069_2996086_+\|transposase	IS110-like element IS1663 family transposase	NA	NA	NA	NA
WP_003817162.1\|2996185_2996818_-	protein phosphatase CheZ	NA	NA	NA	NA
WP_003811911.1\|2996826_2997216_-	chemotaxis protein CheY	Q56AR1	Bacillus_thuringiensis_phage	5.7e-10	33.3
WP_010930146.1\|2997268_2998321_-	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA
WP_010930145.1\|2999184_3000891_-	HAMP domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	1.4e-12	41.7
WP_003811919.1\|3000964_3001465_-	chemotaxis protein CheW	NA	NA	NA	NA
WP_010930144.1\|3001479_3003537_-	chemotaxis protein CheA	NA	NA	NA	NA
WP_019247393.1\|3003563_3003857_-	response regulator	NA	NA	NA	NA
WP_003817154.1\|3003958_3004906_-	flagellar motor protein MotB	NA	NA	NA	NA
WP_003811927.1\|3004918_3005794_-	flagellar motor stator protein MotA	NA	NA	NA	NA
WP_003811929.1\|3005914_3006475_-	flagellar transcriptional regulator FlhC	NA	NA	NA	NA
WP_010930143.1\|3006509_3006833_-	flagellar transcriptional regulator FlhD	NA	NA	NA	NA
WP_003811933.1\|3007268_3008006_+	RNA polymerase sigma factor FliA	NA	NA	NA	NA
WP_005012067.1\|3008304_3009255_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_003809486.1\|3009498_3009762_+	translation initiation factor IF-1	NA	NA	NA	NA
WP_003819817.1\|3009835_3010117_+	hypothetical protein	NA	NA	NA	NA
WP_010930142.1\|3010133_3010994_-	M23 family metallopeptidase	A0A292GJG6	Xanthomonas_phage	2.6e-15	36.1
WP_003809479.1\|3010990_3011326_-	hypothetical protein	NA	NA	NA	NA
WP_010930141.1\|3011379_3012030_-	molybdopterin adenylyltransferase	NA	NA	NA	NA
WP_019247197.1\|3013710_3014655_-	AzlC family ABC transporter permease	NA	NA	NA	NA
WP_003809467.1\|3014700_3015018_-	MerR family transcriptional regulator	NA	NA	NA	NA
WP_010930139.1\|3015020_3015959_-	DnaJ domain-containing protein	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	5.6e-11	24.1
WP_003819814.1\|3016136_3016622_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_010930138.1\|3016640_3017189_+	diguanylate cyclase	NA	NA	NA	NA
WP_023994624.1\|3017220_3017373_+	hypothetical protein	NA	NA	NA	NA
WP_010930137.1\|3018702_3019344_+	glutathione transferase	NA	NA	NA	NA
WP_010930136.1\|3019498_3021847_+	DUF3141 domain-containing protein	NA	NA	NA	NA
WP_003809454.1\|3021843_3022782_+	phosphate acetyltransferase	NA	NA	NA	NA
WP_010930135.1\|3022807_3023998_+	acetate kinase	NA	NA	NA	NA
WP_010930134.1\|3023994_3024768_+	enoyl-ACP reductase FabI	NA	NA	NA	NA
WP_010930133.1\|3024797_3025991_-	phosphoglycerate kinase	NA	NA	NA	NA
WP_010930132.1\|3026108_3027119_-	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA
WP_010930131.1\|3027136_3029173_-	transketolase	NA	NA	NA	NA
WP_010930130.1\|3029367_3030108_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA
WP_005012808.1\|3030206_3031157_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_003817151.1\|3031199_3032375_+	FliC/FljB family flagellin	NA	NA	NA	NA
WP_010930129.1\|3032596_3034387_-	dihydrolipoyl dehydrogenase	A0A2K5B2C5	Erysipelothrix_phage	2.4e-39	25.2
WP_010930128.1\|3034399_3036061_-	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA
WP_010930127.1\|3036073_3038779_-	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA
WP_003817147.1\|3039071_3040826_+	PAS domain S-box protein	NA	NA	NA	NA
WP_010930126.1\|3040822_3041449_+	response regulator transcription factor	NA	NA	NA	NA
WP_003811948.1\|3041445_3042297_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	2.1e-33	39.8
WP_010930125.1\|3042426_3044487_+	M3 family metallopeptidase	NA	NA	NA	NA
WP_010930124.1\|3044673_3045288_+	SCO family protein	NA	NA	NA	NA
WP_010930123.1\|3045433_3045685_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA
WP_014486063.1\|3045754_3047137_-	efflux transporter outer membrane subunit	NA	NA	NA	NA
WP_010930121.1\|3047133_3050313_-	efflux RND transporter permease subunit	NA	NA	NA	NA
WP_029443805.1\|3051120_3052038_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_010930119.1\|3052089_3052821_-	rRNA pseudouridine synthase	NA	NA	NA	NA
WP_010926548.1\|3052880_3053453_+	chorismate lyase	NA	NA	NA	NA
WP_010929632.1\|3054961_3055978_+\|transposase	IS110-like element IS1663 family transposase	NA	NA	NA	NA
WP_010930118.1\|3056115_3057165_-	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA
WP_005012067.1\|3057269_3058220_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA

DBSCAN-SWA_24

3077620 : 3142560

Bacillus_phage(18.18%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005012067.1\|3077620_3078571_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_033446303.1\|3078669_3079254_-	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA
WP_003821513.1\|3079288_3080278_-	ADP-glyceromanno-heptose 6-epimerase	E3SJ87	Synechococcus_phage	2.2e-26	34.4
WP_010930105.1\|3080274_3081216_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	A0A2H4N7X4	Lake_Baikal_phage	1.5e-16	28.1
WP_010930104.1\|3081212_3082433_-	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA
WP_010930103.1\|3082475_3082790_-	DUF1049 domain-containing protein	NA	NA	NA	NA
WP_010930102.1\|3082981_3083341_-	integration host factor subunit beta	NA	NA	NA	NA
WP_010930101.1\|3083342_3085058_-	30S ribosomal protein S1	NA	NA	NA	NA
WP_010930100.1\|3085245_3085917_-	(d)CMP kinase	NA	NA	NA	NA
WP_010930099.1\|3085931_3087260_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA
WP_010930098.1\|3087256_3088156_-	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA
WP_010930097.1\|3088242_3089328_-	prephenate dehydratase	NA	NA	NA	NA
WP_023852687.1\|3089320_3090451_-	3-phosphoserine/phosphohydroxythreonine transaminase	M1Q1P2	Streptococcus_phage	4.9e-78	44.0
WP_010930095.1\|3090453_3093135_-	DNA gyrase subunit A	G3M9Z5	Bacillus_virus	3.2e-104	33.5
WP_010930094.1\|3093505_3094087_+	OmpA family protein	NA	NA	NA	NA
WP_010930093.1\|3094212_3094938_+	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA
WP_010930092.1\|3094934_3095612_+	HAD-IA family hydrolase	NA	NA	NA	NA
WP_010930091.1\|3095827_3097009_+	MFS transporter	NA	NA	NA	NA
WP_010930090.1\|3097781_3097964_+	type II toxin-antitoxin system HicA family toxin	A0A1L2JY37	Aeribacillus_phage	3.7e-12	56.1
WP_005012808.1\|3097993_3098944_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_004566317.1\|3099073_3099466_+	type II toxin-antitoxin system HicB family antitoxin	A0A0R6PJ17	Moraxella_phage	4.8e-25	45.0
WP_003821497.1\|3099742_3100654_-	LysR family transcriptional regulator	Q6JIH3	Burkholderia_virus	4.4e-05	27.6
WP_010930088.1\|3100778_3101753_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_005012067.1\|3101749_3102700_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_003810865.1\|3102798_3103884_-	DNA polymerase IV	NA	NA	NA	NA
WP_010930072.1\|3103981_3104392_+	PaaI family thioesterase	NA	NA	NA	NA
WP_003810859.1\|3105007_3106921_+	S9 family peptidase	NA	NA	NA	NA
WP_010930071.1\|3107056_3109669_+	PBP1A family penicillin-binding protein	NA	NA	NA	NA
WP_019248496.1\|3109670_3110405_-	serine/threonine protein phosphatase	A0A2H4J0P0	uncultured_Caudovirales_phage	1.9e-62	49.2
WP_003810851.1\|3110568_3111750_+	PepSY domain-containing protein	NA	NA	NA	NA
WP_003810850.1\|3111746_3111959_+	hypothetical protein	NA	NA	NA	NA
WP_010930069.1\|3111955_3112936_-	aldo/keto reductase	NA	NA	NA	NA
WP_010930068.1\|3112981_3113809_-	oxidoreductase	A0A2H4PQR8	Staphylococcus_phage	1.7e-67	47.4
WP_023852913.1\|3113958_3115773_+	ABC transporter ATP-binding protein/permease	W8CYL7	Bacillus_phage	5.7e-44	27.9
WP_003810840.1\|3115827_3116211_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA
WP_010930066.1\|3116207_3117158_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_003810839.1\|3117270_3117522_-	hypothetical protein	NA	NA	NA	NA
WP_003810837.1\|3117715_3117931_-	hypothetical protein	NA	NA	NA	NA
WP_003810835.1\|3118027_3119146_-	mannose-6-phosphate isomerase	NA	NA	NA	NA
WP_003810832.1\|3119265_3119478_-	hypothetical protein	NA	NA	NA	NA
WP_010930064.1\|3119637_3119859_-	hypothetical protein	NA	NA	NA	NA
WP_010929591.1\|3119911_3120862_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010930062.1\|3122038_3123409_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA
WP_010930061.1\|3123441_3124233_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_010930060.1\|3124245_3125301_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_019247557.1\|3125326_3126202_-	amidohydrolase	NA	NA	NA	NA
WP_023852826.1\|3126307_3126556_-	hypothetical protein	NA	NA	NA	NA
WP_003819989.1\|3126590_3128045_-	carboxylase	NA	NA	NA	NA
WP_004568140.1\|3128041_3128563_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA
WP_010930057.1\|3128591_3129944_-	MmgE/PrpD family protein	NA	NA	NA	NA
WP_029444137.1\|3130167_3133056_-	HD domain-containing protein	NA	NA	NA	NA
WP_010930056.1\|3135200_3136502_+	phospholipase	NA	NA	NA	NA
WP_010930055.1\|3136516_3137233_-	flagellar brake protein	NA	NA	NA	NA
WP_010930054.1\|3137514_3138195_+	DUF3313 domain-containing protein	NA	NA	NA	NA
WP_010930052.1\|3138722_3139382_-	thiopurine S-methyltransferase	NA	NA	NA	NA
WP_010930051.1\|3139780_3141613_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	1.3e-27	26.4
WP_005012067.1\|3141609_3142560_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA

DBSCAN-SWA_25

3234183 : 3303186

Klosneuvirus(16.67%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041337087.1\|3234183_3235134_+\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_003813068.1\|3235130_3236150_-	class 1 fructose-bisphosphatase	A0A1V0SKX4	Klosneuvirus	1.5e-49	35.7
WP_010930049.1\|3236159_3238868_-	aminopeptidase N	A0A0P0IY26	Acinetobacter_phage	2.8e-15	24.0
WP_010930050.1\|3239015_3239672_+	DUF4136 domain-containing protein	NA	NA	NA	NA
WP_005013747.1\|3239770_3240721_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_023998705.1\|3240868_3241762_+	mechanosensitive ion channel family protein	NA	NA	NA	NA
WP_010930013.1\|3241961_3243656_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA
WP_010930012.1\|3243690_3244617_+	VOC family protein	NA	NA	NA	NA
WP_010930011.1\|3244685_3245783_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_003818996.1\|3245801_3246665_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	9.6e-34	38.9
WP_010930010.1\|3246676_3247459_+	ABC transporter permease	NA	NA	NA	NA
WP_004566042.1\|3247455_3248574_+	DUF2817 domain-containing protein	NA	NA	NA	NA
WP_010930009.1\|3248570_3250103_+	acyl--CoA ligase	NA	NA	NA	NA
WP_003818991.1\|3250143_3251151_+	zinc-binding dehydrogenase	NA	NA	NA	NA
WP_023999677.1\|3251295_3252018_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_010930007.1\|3252033_3253056_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA
WP_010930006.1\|3253372_3254107_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_010930005.1\|3254191_3255937_+	acetolactate synthase	NA	NA	NA	NA
WP_010930004.1\|3255933_3256686_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_010930003.1\|3256730_3257687_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_003818983.1\|3257775_3258342_+	membrane protein	NA	NA	NA	NA
WP_010930002.1\|3258349_3259210_-	D-amino acid aminotransferase	NA	NA	NA	NA
WP_020699739.1\|3259239_3259968_-	amino acid ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.4e-32	42.4
WP_003807497.1\|3259999_3260683_-	ABC transporter permease subunit	NA	NA	NA	NA
WP_010930000.1\|3261520_3262435_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_010929999.1\|3262499_3263408_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_010929998.1\|3263498_3264923_-	TolC family protein	NA	NA	NA	NA
WP_010929997.1\|3264924_3266247_-	cyclolysin T1SS periplasmic adaptor subunit CyaD	NA	NA	NA	NA
WP_010929996.1\|3266243_3268382_-	cyclolysin T1SS permease/ATPase CyaB	W8CYL7	Bacillus_phage	2.7e-45	29.2
WP_010929995.1\|3268459_3273580_-	bifunctional adenylate cyclase toxin/hemolysin CyaA	NA	NA	NA	NA
WP_153302771.1\|3273680_3273989_+	hypothetical protein	NA	NA	NA	NA
WP_010929994.1\|3274058_3274616_+	cyclolysin-activating lysine-acyltransferase	NA	NA	NA	NA
WP_010929993.1\|3274631_3276113_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_023853308.1\|3276167_3278021_-\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_010929992.1\|3278283_3279621_-	FAD-binding oxidoreductase	NA	NA	NA	NA
WP_010929991.1\|3279655_3281653_-	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA
WP_010929990.1\|3281670_3283719_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA
WP_010929989.1\|3283849_3284716_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_010929988.1\|3284984_3285950_-	octaprenyl diphosphate synthase	NA	NA	NA	NA
WP_010929987.1\|3286064_3287213_-	fumarylacetoacetate hydrolase	NA	NA	NA	NA
WP_003807462.1\|3287637_3287949_+	50S ribosomal protein L21	NA	NA	NA	NA
WP_003807460.1\|3287982_3288243_+	50S ribosomal protein L27	NA	NA	NA	NA
WP_003807459.1\|3288392_3289526_+	GTPase ObgE	NA	NA	NA	NA
WP_003807457.1\|3289596_3290733_+	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	5.8e-63	44.8
WP_010925762.1\|3290898_3291693_-	response regulator transcription factor	NA	NA	NA	NA
WP_003807452.1\|3291755_3292199_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_005012808.1\|3292314_3293265_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_020699729.1\|3293387_3293795_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_010929984.1\|3293867_3296063_+	DUF1156 domain-containing protein	NA	NA	NA	NA
WP_005012067.1\|3296284_3297235_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_023852739.1\|3297194_3297719_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_003814467.1\|3297850_3298822_+	FecR family protein	NA	NA	NA	NA
WP_010929983.1\|3298941_3301386_+	TonB-dependent siderophore receptor	NA	NA	NA	NA
WP_010929982.1\|3301401_3301992_-	polyisoprenoid-binding protein	NA	NA	NA	NA
WP_010929591.1\|3302235_3303186_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA

DBSCAN-SWA_26

3318632 : 3418745

108

uncultured_Caudovirales_phage(14.29%)

transposase,tRNA,protease,terminase,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005012067.1\|3318632_3319583_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_003814437.1\|3320314_3320692_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA
WP_003814436.1\|3320676_3321378_-	membrane protein	NA	NA	NA	NA
WP_010931409.1\|3321521_3322214_-	nucleotidyltransferase family protein	NA	NA	NA	NA
WP_010931410.1\|3322213_3323317_-	phosphotransferase	NA	NA	NA	NA
WP_010931411.1\|3323426_3325799_+	LPS-assembly protein LptD	NA	NA	NA	NA
WP_010931412.1\|3325795_3327355_+	chaperone SurA	NA	NA	NA	NA
WP_010931413.1\|3327379_3328177_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA
WP_010931414.1\|3328208_3329354_-	glycerate kinase	W6LM47	Streptococcus_phage	1.7e-41	42.2
WP_003814419.1\|3329458_3330901_+	pyruvate kinase	NA	NA	NA	NA
WP_010929184.1\|3330903_3332133_-	spore maturation protein	NA	NA	NA	NA
WP_005012808.1\|3334270_3335221_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_019247922.1\|3336350_3336908_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_019247923.1\|3336883_3337234_-	hypothetical protein	NA	NA	NA	NA
WP_003814657.1\|3337402_3338197_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.4e-15	30.6
WP_010931416.1\|3338193_3339243_-	iron ABC transporter permease	NA	NA	NA	NA
WP_003814652.1\|3339242_3339932_-	tol-pal system protein YbgF	NA	NA	NA	NA
WP_003814650.1\|3340018_3340516_-	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA
WP_010931417.1\|3340547_3341864_-	Tol-Pal system protein TolB	NA	NA	NA	NA
WP_010931418.1\|3341880_3342855_-	cell envelope integrity protein TolA	NA	NA	NA	NA
WP_003814643.1\|3342891_3343350_-	protein TolR	NA	NA	NA	NA
WP_003814641.1\|3343349_3344030_-	protein TolQ	NA	NA	NA	NA
WP_010931419.1\|3344032_3344461_-	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA
WP_003814636.1\|3344513_3346244_-\|tRNA	proline--tRNA ligase	A0A2K9L3R9	Tupanvirus	4.6e-11	29.4
WP_003814635.1\|3346309_3346882_+	RNA pyrophosphohydrolase	NA	NA	NA	NA
WP_010931420.1\|3346862_3347549_+	response regulator	NA	NA	NA	NA
WP_010931421.1\|3347904_3348576_+	SOS response-associated peptidase	Q5QF62	Pseudomonas_virus	4.7e-36	39.9
WP_010931422.1\|3348904_3349126_+	hypothetical protein	NA	NA	NA	NA
WP_010926433.1\|3349125_3349407_+	hypothetical protein	NA	NA	NA	NA
WP_010931423.1\|3349403_3349919_-	DUF2514 family protein	NA	NA	NA	NA
WP_010931424.1\|3349918_3350470_-	lysozyme	NA	NA	NA	NA
WP_010931425.1\|3350448_3350691_-	hypothetical protein	NA	NA	NA	NA
WP_010931426.1\|3350695_3351508_-	hypothetical protein	NA	NA	NA	NA
WP_010926428.1\|3351507_3351771_-	hypothetical protein	NA	NA	NA	NA
WP_124740660.1\|3351811_3352009_-	hypothetical protein	NA	NA	NA	NA
WP_010931428.1\|3351989_3352406_-	hypothetical protein	NA	NA	NA	NA
WP_010931429.1\|3352410_3356367_-	DUF1983 domain-containing protein	A0A0B5A1N2	Achromobacter_phage	3.9e-215	40.8
WP_010931430.1\|3356359_3356749_-	C40 family peptidase	A0A0G3EYJ9	Achromobacter_phage	3.0e-35	50.0
WP_010931431.1\|3356745_3357279_-	DUF1833 family protein	A5A3Q9	Burkholderia_phage	1.1e-40	46.9
WP_010931432.1\|3357346_3357706_-	hypothetical protein	NA	NA	NA	NA
WP_010931433.1\|3357715_3360328_-\|tail	phage tail tape measure protein	A0A2H4J107	uncultured_Caudovirales_phage	4.9e-105	38.6
WP_010931434.1\|3360353_3360644_-	DUF1799 domain-containing protein	A0A2H4JBP7	uncultured_Caudovirales_phage	3.7e-14	45.2
WP_003813412.1\|3360661_3360991_-	hypothetical protein	A0A2H4J121	uncultured_Caudovirales_phage	2.9e-15	44.0
WP_010931435.1\|3361000_3361519_-	hypothetical protein	A0A1S5R1H0	Pseudomonas_phage	5.4e-24	38.3
WP_010931436.1\|3361773_3362274_-	HNH endonuclease	A0A1I9SEX5	Klebsiella_phage	4.4e-31	45.1
WP_010931437.1\|3362281_3362704_-	DUF4128 domain-containing protein	NA	NA	NA	NA
WP_010931438.1\|3362700_3363099_-	hypothetical protein	I6PCW1	Cronobacter_phage	4.2e-16	38.0
WP_010931439.1\|3363095_3363491_-	hypothetical protein	A0A2D2W284	Stenotrophomonas_phage	7.8e-07	35.0
WP_162096760.1\|3363490_3363679_-	hypothetical protein	NA	NA	NA	NA
WP_019247789.1\|3363692_3364175_-	hypothetical protein	A0A2H4JE38	uncultured_Caudovirales_phage	1.8e-13	37.1
WP_010931442.1\|3364237_3364489_-	hypothetical protein	NA	NA	NA	NA
WP_005012808.1\|3365163_3366114_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010931443.1\|3366542_3367145_-	hypothetical protein	R9TF81	Synechococcus_phage	7.9e-27	43.6
WP_010931444.1\|3367267_3367510_-	hypothetical protein	A0A0H5AUE5	Pseudomonas_phage	5.6e-16	53.2
WP_010931445.1\|3367515_3368571_-	hypothetical protein	A0A0H5BBX3	Pseudomonas_phage	2.6e-97	50.6
WP_010931446.1\|3368599_3370018_-	DUF4055 domain-containing protein	R9TF43	Synechococcus_phage	2.2e-99	42.1
WP_010931447.1\|3370020_3371298_-\|terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	2.4e-150	64.7
WP_019247942.1\|3371284_3371770_-\|transposase	transposase	C7U0W1	Enterobacteria_phage	7.3e-39	61.5
WP_005012067.1\|3372409_3373360_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_023853183.1\|3373377_3373599_+	hypothetical protein	NA	NA	NA	NA
WP_161633094.1\|3373616_3374306_-	hypothetical protein	NA	NA	NA	NA
WP_023853179.1\|3374298_3374550_-	transcriptional regulator	NA	NA	NA	NA
WP_010931451.1\|3375104_3375716_+	S24 family peptidase	NA	NA	NA	NA
WP_019247378.1\|3375787_3375994_+	hypothetical protein	NA	NA	NA	NA
WP_005012067.1\|3376245_3377196_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_019248926.1\|3377294_3378368_-	hypothetical protein	NA	NA	NA	NA
WP_010931475.1\|3378535_3379330_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_010925795.1\|3379369_3379894_-	DUF934 domain-containing protein	NA	NA	NA	NA
WP_010931474.1\|3379886_3381629_-	nitrite/sulfite reductase	NA	NA	NA	NA
WP_010931473.1\|3381838_3382597_-	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	4.4e-14	24.4
WP_010931472.1\|3382599_3383307_-	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	8.2e-07	25.4
WP_010931471.1\|3383323_3384205_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
WP_019247734.1\|3384215_3384974_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
WP_019248554.1\|3384942_3385698_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_010931468.1\|3385767_3387186_+	amidase	NA	NA	NA	NA
WP_003819076.1\|3387207_3387858_-	carbonic anhydrase	NA	NA	NA	NA
WP_033446132.1\|3387991_3388327_-	ASCH domain-containing protein	NA	NA	NA	NA
WP_010930800.1\|3388415_3389366_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010931467.1\|3389442_3391263_+	DNA helicase RecQ	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	3.1e-74	35.3
WP_010931466.1\|3391267_3392341_-	Holliday junction branch migration DNA helicase RuvB	A0A127AWE7	Bacillus_phage	2.3e-08	25.7
WP_003814230.1\|3392463_3393432_+	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA
WP_010927008.1\|3393505_3394417_+	complex I NDUFA9 subunit family protein	NA	NA	NA	NA
WP_003814226.1\|3394435_3395008_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA
WP_010931465.1\|3395088_3395637_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA
WP_010931464.1\|3395636_3397226_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	Q58MG4	Prochlorococcus_phage	8.7e-65	47.2
WP_003814221.1\|3397295_3397535_-	DNA-binding protein	NA	NA	NA	NA
WP_023995141.1\|3397575_3398601_-\|tRNA	tRNA dihydrouridine synthase DusB	NA	NA	NA	NA
WP_003814217.1\|3398666_3399848_-	UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase	NA	NA	NA	NA
WP_010931463.1\|3399944_3400397_+	membrane protein	NA	NA	NA	NA
WP_010931462.1\|3400406_3401747_-	M24 family metallopeptidase	NA	NA	NA	NA
WP_010931461.1\|3402063_3403101_+	sodium:calcium antiporter	NA	NA	NA	NA
WP_003814209.1\|3403482_3403842_+	hypothetical protein	NA	NA	NA	NA
WP_041166340.1\|3403925_3404867_-\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_076879617.1\|3404941_3405892_+\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_003814206.1\|3406185_3407280_+	porin	NA	NA	NA	NA
WP_033446149.1\|3407370_3408243_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA
WP_003814203.1\|3408264_3409104_-	UTP--glucose-1-phosphate uridylyltransferase GalU	A0A127AW70	Bacillus_phage	1.1e-66	48.9
WP_010931459.1\|3409179_3410697_+\|protease	M48 family metalloprotease	NA	NA	NA	NA
WP_010931458.1\|3410793_3411894_-	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_010931457.1\|3411910_3412333_-	SnoaL-like domain-containing protein	NA	NA	NA	NA
WP_003814195.1\|3412355_3412568_-	zinc-finger domain-containing protein	NA	NA	NA	NA
WP_010931456.1\|3412614_3413535_-	branched-chain amino acid transaminase	NA	NA	NA	NA
WP_010931455.1\|3413717_3414467_+	AzlC family ABC transporter permease	NA	NA	NA	NA
WP_003814188.1\|3414469_3414799_+	AzlD domain-containing protein	NA	NA	NA	NA
WP_033446148.1\|3415086_3416439_+	DEAD/DEAH box helicase	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	2.1e-51	34.4
WP_003814185.1\|3416450_3416834_-	thioredoxin family protein	NA	NA	NA	NA
WP_010931453.1\|3416895_3417696_+	EI24 domain-containing protein	NA	NA	NA	NA
WP_005015810.1\|3417794_3418745_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA

DBSCAN-SWA_27

4027504 : 4087694

Planktothrix_phage(28.57%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010931661.1\|4027504_4028455_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010931662.1\|4028624_4029851_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA
WP_010931663.1\|4030050_4030917_+	ATP-binding protein	NA	NA	NA	NA
WP_003815027.1\|4030909_4031872_+	Nudix family hydrolase	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	1.9e-06	53.4
WP_010927663.1\|4031972_4032923_+\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_010929577.1\|4033021_4033972_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_023994937.1\|4033968_4035462_-	efflux transporter outer membrane subunit	NA	NA	NA	NA
WP_003815032.1\|4035458_4038566_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA
WP_010931665.1\|4038562_4041631_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA
WP_010931666.1\|4041627_4042878_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_023853184.1\|4043058_4043811_-	cell division protein ZapD	NA	NA	NA	NA
WP_010931667.1\|4043852_4044497_-	dephospho-CoA kinase	NA	NA	NA	NA
WP_010931668.1\|4044505_4045486_-	prepilin peptidase	NA	NA	NA	NA
WP_003815047.1\|4045585_4046329_+	hypothetical protein	NA	NA	NA	NA
WP_003815049.1\|4046411_4046759_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_003815051.1\|4046856_4047699_-	pantoate--beta-alanine ligase	NA	NA	NA	NA
WP_003815053.1\|4047743_4048631_-	segregation/condensation protein A	NA	NA	NA	NA
WP_003815055.1\|4048657_4048846_-	DUF3460 family protein	NA	NA	NA	NA
WP_010931669.1\|4048943_4050401_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA
WP_010931670.1\|4050387_4051914_+	glycerol kinase GlpK	NA	NA	NA	NA
WP_003815061.1\|4051932_4052400_-	membrane protein	NA	NA	NA	NA
WP_010931671.1\|4052399_4053422_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_003815064.1\|4053542_4054283_-	amino acid ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	4.4e-35	39.7
WP_003815066.1\|4054337_4055438_-	amino acid ABC transporter permease	NA	NA	NA	NA
WP_003815068.1\|4055439_4056630_-	amino acid ABC transporter permease	NA	NA	NA	NA
WP_003815070.1\|4056749_4057766_-	amino acid ABC transporter substrate-binding protein	A0A1B1IT51	uncultured_Mediterranean_phage	1.0e-71	42.1
WP_003815073.1\|4058084_4058756_+	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	9.5e-29	38.2
WP_010927126.1\|4058752_4059661_+	FtsX-like permease family protein	NA	NA	NA	NA
WP_010931672.1\|4059872_4060520_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA
WP_033446142.1\|4064380_4065448_+	A/G-specific adenine glycosylase	NA	NA	NA	NA
WP_003815084.1\|4065458_4066268_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_003815086.1\|4066357_4067131_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_023853189.1\|4067131_4067296_-	hypothetical protein	NA	NA	NA	NA
WP_010930363.1\|4067313_4068264_+\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_077274100.1\|4068152_4069175_+	CoA transferase	NA	NA	NA	NA
WP_010931674.1\|4069164_4070319_+	CoA transferase	NA	NA	NA	NA
WP_010931675.1\|4070358_4071771_+	MmgE/PrpD family protein	NA	NA	NA	NA
WP_019247370.1\|4071895_4072762_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_010931677.1\|4072763_4073588_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA
WP_023853488.1\|4073584_4074346_+	nitroreductase	M1I6Q5	Acanthocystis_turfacea_Chlorella_virus	2.0e-19	31.0
WP_003808010.1\|4074426_4075113_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_010931679.1\|4075286_4076294_+	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA
WP_003819309.1\|4076290_4077070_+	enoyl-CoA hydratase	NA	NA	NA	NA
WP_010931680.1\|4077127_4078390_+	CoA transferase	NA	NA	NA	NA
WP_010929591.1\|4078936_4079887_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_003816030.1\|4080018_4081458_+	catalase	A0A2K9L0T1	Tupanvirus	2.4e-106	40.8
WP_010927255.1\|4081518_4082400_-	ABC transporter permease	NA	NA	NA	NA
WP_010931681.1\|4082396_4083212_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	6.1e-30	40.4
WP_010931682.1\|4083213_4084257_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_003816037.1\|4084300_4085224_-	TauD/TfdA family dioxygenase	NA	NA	NA	NA
WP_019248557.1\|4085353_4086553_-	amidohydrolase	NA	NA	NA	NA
WP_005013747.1\|4086743_4087694_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP011236

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection