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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP011239 Bordetella pertussis strain H915 chromosome, complete genome 5 crisprs DEDDh,csa3,cas3,DinG 0 0 25 0

Results visualization

1. NZ_CP011239
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011239_1 251640-251724 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011239_2 625048-625157 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011239_3 1840996-1841123 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011239_4 2907598-2907714 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011239_5 3622354-3622447 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 27282 : 70036 42 Synechococcus_phage(50.0%) tRNA,transposase NA
DBSCAN-SWA_2 77634 : 136108 53 Planktothrix_phage(22.22%) tRNA,transposase NA
DBSCAN-SWA_3 164893 : 287973 105 Klosneuvirus(11.76%) tRNA,transposase,protease NA
DBSCAN-SWA_4 556358 : 615658 47 Acinetobacter_phage(27.27%) tRNA,transposase NA
DBSCAN-SWA_5 621813 : 675550 48 Salmonella_phage(33.33%) transposase NA
DBSCAN-SWA_6 724488 : 765487 30 Pseudomonas_phage(33.33%) tRNA,transposase,integrase,protease attL 721736:721754|attR 741624:741642
DBSCAN-SWA_7 775414 : 823032 46 Bovine_alphaherpesvirus(10.0%) tRNA,transposase,holin,protease NA
DBSCAN-SWA_8 998889 : 1101282 93 Bacillus_virus(27.27%) tRNA,transposase NA
DBSCAN-SWA_9 1131668 : 1202639 52 uncultured_Mediterranean_phage(25.0%) transposase,protease NA
DBSCAN-SWA_10 1250033 : 1330908 58 Bacillus_virus(25.0%) tRNA,transposase NA
DBSCAN-SWA_11 1450303 : 1514519 59 Salmonella_phage(16.67%) tRNA,transposase,protease NA
DBSCAN-SWA_12 1744254 : 1801533 49 Klosneuvirus(14.29%) tRNA,transposase NA
DBSCAN-SWA_13 1852782 : 1912052 51 Klosneuvirus(40.0%) tRNA,transposase,protease NA
DBSCAN-SWA_14 1922292 : 1979789 56 Staphylococcus_phage(16.67%) transposase NA
DBSCAN-SWA_15 1995339 : 2059708 51 Vibrio_phage(20.0%) transposase NA
DBSCAN-SWA_16 2246176 : 2307524 52 Yellowstone_lake_phycodnavirus(12.5%) tRNA,transposase NA
DBSCAN-SWA_17 2328315 : 2399469 54 Tetraselmis_virus(10.0%) transposase NA
DBSCAN-SWA_18 2495297 : 2559473 56 Planktothrix_phage(28.57%) tRNA,transposase NA
DBSCAN-SWA_19 2605566 : 2669008 53 uncultured_Caudovirales_phage(40.0%) transposase NA
DBSCAN-SWA_20 2835680 : 2901264 52 Oenococcus_phage(33.33%) tRNA,transposase NA
DBSCAN-SWA_21 2918834 : 2979777 51 Catovirus(22.22%) tRNA,transposase,holin NA
DBSCAN-SWA_22 2984663 : 3057180 60 Pseudomonas_phage(14.29%) tRNA,transposase NA
DBSCAN-SWA_23 3076580 : 3141520 57 Bacillus_phage(18.18%) transposase NA
DBSCAN-SWA_24 3233143 : 3302146 55 Klosneuvirus(16.67%) transposase NA
DBSCAN-SWA_25 3317592 : 3417705 107 uncultured_Caudovirales_phage(14.29%) terminase,protease,tail,tRNA,transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage