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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP011705 Bordetella pertussis strain H842 chromosome, complete genome 4 crisprs csa3,cas3,DinG,DEDDh 0 0 28 0

Results visualization

1. NZ_CP011705
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011705_1 251641-251725 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011705_2 433083-433176 Orphan NA
1 spacers
DEDDh

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011705_3 997407-997501 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011705_4 3435644-3435753 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 59497 54 Natrialba_phage(12.5%) tRNA,transposase NA
DBSCAN-SWA_2 70134 : 123122 50 Planktothrix_phage(20.0%) tRNA,transposase NA
DBSCAN-SWA_3 165943 : 226454 51 Diachasmimorpha_longicaudata_entomopoxvirus(11.11%) tRNA,transposase,protease NA
DBSCAN-SWA_4 234386 : 287974 47 Bacillus_phage(25.0%) tRNA,transposase,protease NA
DBSCAN-SWA_5 391906 : 449415 50 Orpheovirus(14.29%) transposase NA
DBSCAN-SWA_6 591469 : 652661 56 uncultured_Mediterranean_phage(40.0%) transposase,protease NA
DBSCAN-SWA_7 657985 : 704176 51 uncultured_Caudovirales_phage(18.18%) tRNA,transposase,tail,terminase NA
DBSCAN-SWA_8 710342 : 764271 45 Planktothrix_phage(50.0%) tRNA,transposase NA
DBSCAN-SWA_9 886860 : 1027434 114 Bacillus_phage(11.11%) transposase NA
DBSCAN-SWA_10 1048385 : 1099046 42 uncultured_Mediterranean_phage(50.0%) holin,tRNA,transposase NA
DBSCAN-SWA_11 1114300 : 1179371 46 Catovirus(25.0%) tRNA,transposase NA
DBSCAN-SWA_12 1319005 : 1387492 58 Planktothrix_phage(33.33%) transposase NA
DBSCAN-SWA_13 1447983 : 1503470 56 Mollivirus(16.67%) transposase,protease NA
DBSCAN-SWA_14 1598167 : 1658079 50 Streptococcus_virus(12.5%) tRNA,transposase NA
DBSCAN-SWA_15 1703251 : 1758842 47 Brazilian_cedratvirus(25.0%) transposase NA
DBSCAN-SWA_16 1991606 : 2061258 55 Staphylococcus_phage(16.67%) tRNA,transposase NA
DBSCAN-SWA_17 2072754 : 2122150 45 Erysipelothrix_phage(16.67%) transposase NA
DBSCAN-SWA_18 2133354 : 2174045 37 Klosneuvirus(25.0%) tRNA,transposase,protease NA
DBSCAN-SWA_19 2201828 : 2315490 100 Lake_Baikal_phage(11.54%) tRNA,transposase,protease NA
DBSCAN-SWA_20 2354603 : 2418181 49 uncultured_Caudovirales_phage(11.11%) transposase,protease NA
DBSCAN-SWA_21 2538329 : 2604050 59 Salmonella_phage(15.38%) tRNA,transposase,protease NA
DBSCAN-SWA_22 2690167 : 2730836 42 Salmonella_phage(33.33%) tRNA,transposase NA
DBSCAN-SWA_23 2786301 : 2859171 58 Moraxella_phage(16.67%) tRNA,transposase NA
DBSCAN-SWA_24 2862314 : 2929125 50 uncultured_Mediterranean_phage(28.57%) transposase,protease NA
DBSCAN-SWA_25 2959511 : 2998700 37 Planktothrix_phage(50.0%) transposase NA
DBSCAN-SWA_26 3384197 : 3504442 99 Acinetobacter_phage(20.0%) tRNA,transposase NA
DBSCAN-SWA_27 3519380 : 3577453 47 Planktothrix_phage(12.5%) tRNA,transposase NA
DBSCAN-SWA_28 4010710 : 4075622 60 Planktothrix_phage(40.0%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage