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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP011719 Bordetella pertussis strain I111 chromosome, complete genome 5 crisprs csa3,cas3,DinG,DEDDh 0 0 31 0

Results visualization

1. NZ_CP011719
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011719_1 250590-250674 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011719_2 432033-432126 Orphan NA
1 spacers
DEDDh

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011719_3 995301-995395 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011719_4 1818758-1818885 Orphan NA
1 spacers
csa3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011719_5 3431430-3431539 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 27282 : 70036 41 Synechococcus_phage(50.0%) tRNA,transposase NA
DBSCAN-SWA_2 77634 : 136108 54 Planktothrix_phage(22.22%) tRNA,transposase NA
DBSCAN-SWA_3 164892 : 225403 51 Diachasmimorpha_longicaudata_entomopoxvirus(11.11%) protease,tRNA,transposase NA
DBSCAN-SWA_4 233335 : 286923 47 Bacillus_phage(25.0%) protease,tRNA,transposase NA
DBSCAN-SWA_5 390856 : 448365 50 Orpheovirus(14.29%) transposase NA
DBSCAN-SWA_6 589370 : 650560 55 uncultured_Mediterranean_phage(40.0%) protease,transposase NA
DBSCAN-SWA_7 655884 : 702075 50 uncultured_Caudovirales_phage(18.18%) transposase,terminase,tail,tRNA NA
DBSCAN-SWA_8 708241 : 762171 46 Planktothrix_phage(50.0%) transposase,tRNA NA
DBSCAN-SWA_9 813764 : 885777 60 Acinetobacter_phage(20.0%) holin,transposase NA
DBSCAN-SWA_10 893411 : 956492 54 Bacillus_phage(25.0%) holin,transposase NA
DBSCAN-SWA_11 975914 : 1046181 57 Streptococcus_phage(14.29%) transposase NA
DBSCAN-SWA_12 1058399 : 1116830 47 uncultured_Mediterranean_phage(37.5%) holin,protease,tRNA,transposase NA
DBSCAN-SWA_13 1156529 : 1218700 49 Erysipelothrix_phage(33.33%) tRNA,transposase NA
DBSCAN-SWA_14 1269628 : 1326839 48 Klosneuvirus(16.67%) transposase NA
DBSCAN-SWA_15 1417072 : 1469225 45 Salmonella_phage(25.0%) tRNA,transposase NA
DBSCAN-SWA_16 1513150 : 1581237 59 Streptococcus_virus(11.11%) transposase,tRNA NA
DBSCAN-SWA_17 1617186 : 1672777 47 Brazilian_cedratvirus(25.0%) transposase NA
DBSCAN-SWA_18 1830544 : 1889814 51 Klosneuvirus(40.0%) protease,tRNA,transposase NA
DBSCAN-SWA_19 1900054 : 1944377 44 Staphylococcus_phage(25.0%) transposase NA
DBSCAN-SWA_20 1974150 : 2038519 51 Vibrio_phage(20.0%) transposase NA
DBSCAN-SWA_21 2170048 : 2219701 43 Synechococcus_phage(15.38%) tRNA,transposase NA
DBSCAN-SWA_22 2476008 : 2534252 53 Planktothrix_phage(28.57%) tRNA,transposase NA
DBSCAN-SWA_23 2576530 : 2643030 56 uncultured_Caudovirales_phage(40.0%) transposase NA
DBSCAN-SWA_24 2671145 : 2708557 39 Planktothrix_phage(33.33%) transposase NA
DBSCAN-SWA_25 2807684 : 2862201 48 Diachasmimorpha_longicaudata_entomopoxvirus(20.0%) transposase NA
DBSCAN-SWA_26 2870226 : 2927012 40 uncultured_Mediterranean_phage(28.57%) protease,transposase NA
DBSCAN-SWA_27 2957398 : 3001089 39 Planktothrix_phage(33.33%) transposase NA
DBSCAN-SWA_28 3381032 : 3434773 48 Staphylococcus_phage(33.33%) transposase NA
DBSCAN-SWA_29 3440928 : 3500226 48 Acinetobacter_phage(27.27%) transposase,tRNA NA
DBSCAN-SWA_30 3515164 : 3573237 47 Planktothrix_phage(12.5%) tRNA,transposase NA
DBSCAN-SWA_31 4028552 : 4081984 45 Planktothrix_phage(40.0%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage