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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP011721 Bordetella pertussis strain I127 chromosome, complete genome 5 crisprs DEDDh,csa3,cas3,DinG 0 0 25 0

Results visualization

1. NZ_CP011721
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011721_1 251637-251721 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011721_2 625045-625154 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011721_3 1839940-1840067 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011721_4 2906543-2906659 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011721_5 3621297-3621390 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 27282 : 70036 42 Synechococcus_phage(50.0%) transposase,tRNA NA
DBSCAN-SWA_2 77634 : 136108 53 Planktothrix_phage(22.22%) transposase,tRNA NA
DBSCAN-SWA_3 164891 : 287970 104 Klosneuvirus(11.76%) protease,transposase,tRNA NA
DBSCAN-SWA_4 556355 : 615655 47 Acinetobacter_phage(27.27%) transposase,tRNA NA
DBSCAN-SWA_5 621810 : 675547 48 Salmonella_phage(33.33%) transposase NA
DBSCAN-SWA_6 724485 : 765484 30 Pseudomonas_phage(33.33%) protease,transposase,tRNA,integrase attL 721733:721751|attR 741621:741639
DBSCAN-SWA_7 775411 : 821980 45 Bovine_alphaherpesvirus(10.0%) protease,transposase,holin,tRNA NA
DBSCAN-SWA_8 997834 : 1100227 93 Bacillus_virus(27.27%) transposase,tRNA NA
DBSCAN-SWA_9 1130613 : 1201584 52 uncultured_Mediterranean_phage(25.0%) protease,transposase NA
DBSCAN-SWA_10 1248978 : 1329853 58 Bacillus_virus(25.0%) transposase,tRNA NA
DBSCAN-SWA_11 1449248 : 1513464 59 Salmonella_phage(16.67%) protease,transposase,tRNA NA
DBSCAN-SWA_12 1743198 : 1800477 49 Klosneuvirus(14.29%) transposase,tRNA NA
DBSCAN-SWA_13 1851726 : 1910996 51 Klosneuvirus(40.0%) protease,transposase,tRNA NA
DBSCAN-SWA_14 1921236 : 1978733 56 Staphylococcus_phage(16.67%) transposase NA
DBSCAN-SWA_15 1994283 : 2058652 51 Vibrio_phage(20.0%) transposase NA
DBSCAN-SWA_16 2245120 : 2306468 52 Yellowstone_lake_phycodnavirus(12.5%) transposase,tRNA NA
DBSCAN-SWA_17 2327259 : 2398413 54 Tetraselmis_virus(10.0%) transposase NA
DBSCAN-SWA_18 2494241 : 2558417 56 Planktothrix_phage(28.57%) transposase,tRNA NA
DBSCAN-SWA_19 2604510 : 2667952 53 uncultured_Caudovirales_phage(40.0%) transposase NA
DBSCAN-SWA_20 2834624 : 2900209 52 Oenococcus_phage(33.33%) transposase,tRNA NA
DBSCAN-SWA_21 2917779 : 2978722 51 Catovirus(22.22%) transposase,holin,tRNA NA
DBSCAN-SWA_22 2983608 : 3056125 60 Pseudomonas_phage(14.29%) transposase,tRNA NA
DBSCAN-SWA_23 3075525 : 3140465 57 Bacillus_phage(18.18%) transposase NA
DBSCAN-SWA_24 3232088 : 3301091 55 Klosneuvirus(16.67%) transposase NA
DBSCAN-SWA_25 3316537 : 3416650 107 uncultured_Caudovirales_phage(14.29%) transposase,tail,terminase,protease,tRNA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage