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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP011723 Bordetella pertussis strain I136 chromosome, complete genome 5 crisprs DEDDh,csa3,cas3,DinG 0 0 26 0

Results visualization

1. NZ_CP011723
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011723_1 251641-251725 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011723_2 625051-625160 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011723_3 1841005-1841132 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011723_4 2907613-2907729 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011723_5 3624482-3624575 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 27282 : 70036 43 Synechococcus_phage(50.0%) tRNA,transposase NA
DBSCAN-SWA_2 77634 : 136108 53 Planktothrix_phage(22.22%) tRNA,transposase NA
DBSCAN-SWA_3 164894 : 225405 51 Diachasmimorpha_longicaudata_entomopoxvirus(11.11%) tRNA,protease,transposase NA
DBSCAN-SWA_4 233337 : 287976 47 Bacillus_phage(25.0%) tRNA,protease,transposase NA
DBSCAN-SWA_5 556361 : 615661 47 Acinetobacter_phage(27.27%) tRNA,transposase NA
DBSCAN-SWA_6 621816 : 675557 48 Salmonella_phage(33.33%) transposase NA
DBSCAN-SWA_7 724495 : 764445 29 Pseudomonas_phage(33.33%) tRNA,integrase,protease,transposase attL 721743:721761|attR 741631:741649
DBSCAN-SWA_8 774372 : 821990 46 Bovine_alphaherpesvirus(10.0%) tRNA,holin,protease,transposase NA
DBSCAN-SWA_9 997850 : 1100243 93 Bacillus_virus(27.27%) tRNA,transposase NA
DBSCAN-SWA_10 1130629 : 1201600 52 uncultured_Mediterranean_phage(25.0%) protease,transposase NA
DBSCAN-SWA_11 1242671 : 1324806 60 Bacillus_virus(25.0%) tRNA,transposase NA
DBSCAN-SWA_12 1328917 : 1369586 42 Salmonella_phage(33.33%) tRNA,transposase NA
DBSCAN-SWA_13 1449263 : 1513479 59 Salmonella_phage(16.67%) tRNA,protease,transposase NA
DBSCAN-SWA_14 1744263 : 1801542 49 Klosneuvirus(14.29%) tRNA,transposase NA
DBSCAN-SWA_15 1852791 : 1922203 60 Klosneuvirus(22.22%) tRNA,protease,transposase NA
DBSCAN-SWA_16 1933407 : 1982809 45 Klosneuvirus(16.67%) transposase NA
DBSCAN-SWA_17 1994305 : 2058674 51 Vibrio_phage(20.0%) transposase NA
DBSCAN-SWA_18 2245142 : 2306490 52 Yellowstone_lake_phycodnavirus(12.5%) tRNA,transposase NA
DBSCAN-SWA_19 2327281 : 2398435 54 Tetraselmis_virus(10.0%) transposase NA
DBSCAN-SWA_20 2495312 : 2554093 49 Planktothrix_phage(28.57%) tRNA,transposase NA
DBSCAN-SWA_21 2607679 : 2674179 56 uncultured_Caudovirales_phage(40.0%) transposase NA
DBSCAN-SWA_22 2856582 : 3007181 117 uncultured_Mediterranean_phage(15.79%) tRNA,holin,transposase NA
DBSCAN-SWA_23 3028132 : 3100626 58 Bacillus_virus(16.67%) transposase NA
DBSCAN-SWA_24 3232109 : 3347317 95 Planktothrix_phage(30.0%) tRNA,transposase NA
DBSCAN-SWA_25 3353483 : 3411770 61 uncultured_Caudovirales_phage(17.39%) tRNA,tail,protease,transposase,terminase NA
DBSCAN-SWA_26 4006522 : 4071434 59 Planktothrix_phage(40.0%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage