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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP011727 Bordetella pertussis strain I271 chromosome, complete genome 5 crisprs csa3,cas3,DinG,DEDDh 0 0 30 0

Results visualization

1. NZ_CP011727
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011727_1 250591-250675 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011727_2 432034-432127 Orphan NA
1 spacers
DEDDh

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011727_3 997400-997494 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011727_4 1894876-1895003 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011727_5 3435640-3435749 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 27282 : 70036 42 Synechococcus_phage(50.0%) transposase,tRNA NA
DBSCAN-SWA_2 77634 : 136108 53 Planktothrix_phage(22.22%) transposase,tRNA NA
DBSCAN-SWA_3 164893 : 225404 51 Diachasmimorpha_longicaudata_entomopoxvirus(11.11%) protease,transposase,tRNA NA
DBSCAN-SWA_4 233336 : 286924 47 Bacillus_phage(25.0%) protease,transposase,tRNA NA
DBSCAN-SWA_5 390857 : 448366 50 Orpheovirus(14.29%) transposase NA
DBSCAN-SWA_6 590420 : 704174 111 uncultured_Caudovirales_phage(14.81%) protease,tail,tRNA,terminase,transposase NA
DBSCAN-SWA_7 710340 : 764270 46 Planktothrix_phage(50.0%) transposase,tRNA NA
DBSCAN-SWA_8 886859 : 954835 56 Bacillus_phage(33.33%) transposase NA
DBSCAN-SWA_9 998364 : 1070881 60 Enterococcus_phage(14.29%) transposase,tRNA NA
DBSCAN-SWA_10 1074634 : 1136710 52 Catovirus(20.0%) transposase,holin,tRNA NA
DBSCAN-SWA_11 1154280 : 1219865 52 Erysipelothrix_phage(33.33%) transposase,tRNA NA
DBSCAN-SWA_12 1319001 : 1384430 55 Planktothrix_phage(33.33%) transposase NA
DBSCAN-SWA_13 1449028 : 1504515 56 Mollivirus(16.67%) protease,transposase NA
DBSCAN-SWA_14 1684833 : 1759021 58 Bacillus_phage(10.0%) protease,transposase NA
DBSCAN-SWA_15 1798134 : 1855413 49 Klosneuvirus(14.29%) transposase,tRNA NA
DBSCAN-SWA_16 1906662 : 1965932 51 Klosneuvirus(40.0%) protease,transposase,tRNA NA
DBSCAN-SWA_17 1976172 : 2021544 45 Staphylococcus_phage(25.0%) transposase NA
DBSCAN-SWA_18 2051317 : 2115686 51 Vibrio_phage(20.0%) transposase NA
DBSCAN-SWA_19 2302154 : 2363502 52 Yellowstone_lake_phycodnavirus(12.5%) transposase,tRNA NA
DBSCAN-SWA_20 2384293 : 2455447 54 Tetraselmis_virus(10.0%) transposase NA
DBSCAN-SWA_21 2539647 : 2590819 47 Salmonella_phage(20.0%) transposase,tRNA NA
DBSCAN-SWA_22 2689114 : 2729783 42 Salmonella_phage(33.33%) transposase,tRNA NA
DBSCAN-SWA_23 2785248 : 2858118 58 Moraxella_phage(16.67%) transposase,tRNA NA
DBSCAN-SWA_24 2861261 : 2929121 50 uncultured_Mediterranean_phage(28.57%) protease,transposase NA
DBSCAN-SWA_25 2959507 : 3003198 39 Planktothrix_phage(33.33%) transposase NA
DBSCAN-SWA_26 3317012 : 3386193 51 Tupanvirus(25.0%) protease,integrase,transposase,tRNA attL 3318102:3318120|attR 3339039:3339057
DBSCAN-SWA_27 3405104 : 3468937 47 Staphylococcus_phage(12.5%) transposase,tRNA NA
DBSCAN-SWA_28 3473351 : 3540736 58 Acinetobacter_phage(33.33%) transposase,tRNA NA
DBSCAN-SWA_29 3709572 : 3842498 114 uncultured_Mediterranean_phage(10.34%) integrase,transposase,tRNA attL 3754215:3754232|attR 3798855:3798872
DBSCAN-SWA_30 4008611 : 4073523 59 Planktothrix_phage(40.0%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage