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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP011737 Bordetella pertussis strain I382 chromosome, complete genome 5 crisprs csa3,cas3,DinG,DEDDh 0 0 31 0

Results visualization

1. NZ_CP011737
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011737_1 250592-250676 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011737_2 433084-433177 Orphan NA
1 spacers
DEDDh

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011737_3 996353-996447 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011737_4 1821831-1821958 Orphan NA
1 spacers
csa3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011737_5 3435552-3435661 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 27282 : 70036 42 Synechococcus_phage(50.0%) transposase,tRNA NA
DBSCAN-SWA_2 77634 : 136108 53 Planktothrix_phage(22.22%) transposase,tRNA NA
DBSCAN-SWA_3 164894 : 225405 51 Diachasmimorpha_longicaudata_entomopoxvirus(11.11%) protease,transposase,tRNA NA
DBSCAN-SWA_4 233337 : 287974 48 Bacillus_phage(25.0%) protease,transposase,tRNA NA
DBSCAN-SWA_5 391907 : 449416 50 Orpheovirus(14.29%) transposase NA
DBSCAN-SWA_6 590421 : 651612 56 uncultured_Mediterranean_phage(40.0%) protease,transposase NA
DBSCAN-SWA_7 656936 : 703127 51 uncultured_Caudovirales_phage(18.18%) transposase,terminase,tail,tRNA NA
DBSCAN-SWA_8 709293 : 763223 46 Planktothrix_phage(50.0%) transposase,tRNA NA
DBSCAN-SWA_9 885812 : 953788 56 Bacillus_phage(33.33%) transposase NA
DBSCAN-SWA_10 997317 : 1069834 60 Enterococcus_phage(14.29%) transposase,tRNA NA
DBSCAN-SWA_11 1073587 : 1135663 53 Catovirus(20.0%) transposase,holin,tRNA NA
DBSCAN-SWA_12 1153233 : 1219752 54 Erysipelothrix_phage(33.33%) transposase,tRNA NA
DBSCAN-SWA_13 1270679 : 1327890 49 Klosneuvirus(16.67%) transposase NA
DBSCAN-SWA_14 1418123 : 1470276 45 Salmonella_phage(25.0%) transposase,tRNA NA
DBSCAN-SWA_15 1514201 : 1574038 50 Streptococcus_virus(12.5%) transposase,tRNA NA
DBSCAN-SWA_16 1582310 : 1645290 47 Planktothrix_phage(11.11%) transposase NA
DBSCAN-SWA_17 1666081 : 1727429 52 uncultured_Caudovirales_phage(12.5%) transposase,tRNA NA
DBSCAN-SWA_18 1833617 : 1892887 51 Klosneuvirus(40.0%) protease,transposase,tRNA NA
DBSCAN-SWA_19 1903127 : 1947450 45 Staphylococcus_phage(25.0%) transposase NA
DBSCAN-SWA_20 1977223 : 2041592 51 Vibrio_phage(20.0%) transposase NA
DBSCAN-SWA_21 2173121 : 2222774 43 Synechococcus_phage(15.38%) transposase,tRNA NA
DBSCAN-SWA_22 2479081 : 2537325 54 Planktothrix_phage(28.57%) transposase,tRNA NA
DBSCAN-SWA_23 2579603 : 2646103 56 uncultured_Caudovirales_phage(40.0%) transposase NA
DBSCAN-SWA_24 2674218 : 2712679 40 Planktothrix_phage(33.33%) transposase NA
DBSCAN-SWA_25 2811806 : 2866323 48 Diachasmimorpha_longicaudata_entomopoxvirus(20.0%) transposase NA
DBSCAN-SWA_26 2874348 : 2931134 41 uncultured_Mediterranean_phage(28.57%) protease,transposase NA
DBSCAN-SWA_27 2961519 : 3005210 41 Planktothrix_phage(33.33%) transposase NA
DBSCAN-SWA_28 3385154 : 3438895 48 Staphylococcus_phage(33.33%) transposase NA
DBSCAN-SWA_29 3445050 : 3504350 47 Acinetobacter_phage(27.27%) transposase,tRNA NA
DBSCAN-SWA_30 3519288 : 3577361 47 Planktothrix_phage(12.5%) transposase,tRNA NA
DBSCAN-SWA_31 4009573 : 4074485 60 Planktothrix_phage(40.0%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage