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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP011740 Bordetella pertussis strain I461 chromosome, complete genome 5 crisprs csa3,cas3,DinG,DEDDh 0 0 31 0

Results visualization

1. NZ_CP011740
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011740_1 250591-250675 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011740_2 432034-432127 Orphan NA
1 spacers
DEDDh

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011740_3 996352-996446 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011740_4 1819830-1819957 Orphan NA
1 spacers
csa3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011740_5 3432504-3432613 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 27282 : 70036 41 Synechococcus_phage(50.0%) transposase,tRNA NA
DBSCAN-SWA_2 77634 : 136108 54 Planktothrix_phage(22.22%) transposase,tRNA NA
DBSCAN-SWA_3 164893 : 225404 51 Diachasmimorpha_longicaudata_entomopoxvirus(11.11%) transposase,tRNA,protease NA
DBSCAN-SWA_4 233336 : 286924 48 Bacillus_phage(25.0%) transposase,tRNA,protease NA
DBSCAN-SWA_5 390857 : 448366 50 Orpheovirus(14.29%) transposase NA
DBSCAN-SWA_6 589371 : 650562 56 uncultured_Mediterranean_phage(40.0%) transposase,protease NA
DBSCAN-SWA_7 655886 : 702077 51 uncultured_Caudovirales_phage(18.18%) terminase,transposase,tail,tRNA NA
DBSCAN-SWA_8 708243 : 763222 47 Planktothrix_phage(50.0%) transposase,tRNA NA
DBSCAN-SWA_9 854100 : 903364 40 Vibrio_phage(33.33%) holin,transposase NA
DBSCAN-SWA_10 912976 : 977916 58 Bacillus_phage(18.18%) transposase NA
DBSCAN-SWA_11 997316 : 1060489 53 Enterococcus_phage(16.67%) transposase NA
DBSCAN-SWA_12 1066473 : 1126536 50 uncultured_Mediterranean_phage(37.5%) holin,transposase,tRNA,protease NA
DBSCAN-SWA_13 1157602 : 1219773 50 Erysipelothrix_phage(33.33%) transposase,tRNA NA
DBSCAN-SWA_14 1270701 : 1327912 49 Klosneuvirus(16.67%) transposase NA
DBSCAN-SWA_15 1418145 : 1470298 46 Salmonella_phage(25.0%) transposase,tRNA NA
DBSCAN-SWA_16 1514223 : 1582309 59 Streptococcus_virus(11.11%) transposase,tRNA NA
DBSCAN-SWA_17 1618258 : 1673849 47 Brazilian_cedratvirus(25.0%) transposase NA
DBSCAN-SWA_18 1831616 : 1890886 51 Klosneuvirus(40.0%) transposase,tRNA,protease NA
DBSCAN-SWA_19 1901126 : 1945449 45 Staphylococcus_phage(25.0%) transposase NA
DBSCAN-SWA_20 1975222 : 2039591 51 Vibrio_phage(20.0%) transposase NA
DBSCAN-SWA_21 2171120 : 2220773 43 Synechococcus_phage(15.38%) transposase,tRNA NA
DBSCAN-SWA_22 2477080 : 2535324 54 Planktothrix_phage(28.57%) transposase,tRNA NA
DBSCAN-SWA_23 2577602 : 2644102 56 uncultured_Caudovirales_phage(40.0%) transposase NA
DBSCAN-SWA_24 2672217 : 2709629 39 Planktothrix_phage(33.33%) transposase NA
DBSCAN-SWA_25 2808756 : 2863273 48 Diachasmimorpha_longicaudata_entomopoxvirus(20.0%) transposase NA
DBSCAN-SWA_26 2871298 : 2928084 41 uncultured_Mediterranean_phage(28.57%) transposase,protease NA
DBSCAN-SWA_27 2958470 : 3002161 41 Planktothrix_phage(33.33%) transposase NA
DBSCAN-SWA_28 3382106 : 3435847 48 Staphylococcus_phage(33.33%) transposase NA
DBSCAN-SWA_29 3442002 : 3501300 48 Acinetobacter_phage(27.27%) transposase,tRNA NA
DBSCAN-SWA_30 3516238 : 3574311 47 Planktothrix_phage(12.5%) transposase,tRNA NA
DBSCAN-SWA_31 4028577 : 4082009 46 Planktothrix_phage(40.0%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage