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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP011768 Bordetella pertussis strain J115 chromosome, complete genome 4 crisprs csa3,cas3,DinG,DEDDh 0 0 30 0

Results visualization

1. NZ_CP011768
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011768_1 251640-251724 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011768_2 433083-433176 Orphan NA
1 spacers
DEDDh

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011768_3 996352-996446 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011768_4 3431447-3431556 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 59497 53 Natrialba_phage(12.5%) tRNA,transposase NA
DBSCAN-SWA_2 70134 : 123122 50 Planktothrix_phage(20.0%) tRNA,transposase NA
DBSCAN-SWA_3 165942 : 226453 51 Diachasmimorpha_longicaudata_entomopoxvirus(11.11%) tRNA,protease,transposase NA
DBSCAN-SWA_4 234385 : 287973 47 Bacillus_phage(25.0%) tRNA,protease,transposase NA
DBSCAN-SWA_5 391906 : 449415 50 Orpheovirus(14.29%) transposase NA
DBSCAN-SWA_6 590420 : 651611 56 uncultured_Mediterranean_phage(40.0%) protease,transposase NA
DBSCAN-SWA_7 656935 : 703126 51 uncultured_Caudovirales_phage(18.18%) tail,terminase,tRNA,transposase NA
DBSCAN-SWA_8 709292 : 763222 46 Planktothrix_phage(50.0%) tRNA,transposase NA
DBSCAN-SWA_9 885811 : 953787 56 Bacillus_phage(33.33%) transposase NA
DBSCAN-SWA_10 997316 : 1069833 60 Enterococcus_phage(14.29%) tRNA,transposase NA
DBSCAN-SWA_11 1073586 : 1135662 53 Catovirus(20.0%) holin,tRNA,transposase NA
DBSCAN-SWA_12 1153232 : 1219752 54 Erysipelothrix_phage(33.33%) tRNA,transposase NA
DBSCAN-SWA_13 1270680 : 1327891 49 Klosneuvirus(16.67%) transposase NA
DBSCAN-SWA_14 1418124 : 1482340 60 Salmonella_phage(16.67%) tRNA,protease,transposase NA
DBSCAN-SWA_15 1664807 : 1723799 60 Enterobacteria_phage(33.33%) transposase NA
DBSCAN-SWA_16 1897698 : 1967350 55 Staphylococcus_phage(16.67%) tRNA,transposase NA
DBSCAN-SWA_17 1978846 : 2026154 45 Erysipelothrix_phage(16.67%) transposase NA
DBSCAN-SWA_18 2037358 : 2078049 36 Klosneuvirus(25.0%) tRNA,protease,transposase NA
DBSCAN-SWA_19 2215056 : 2276404 52 Yellowstone_lake_phycodnavirus(12.5%) tRNA,transposase NA
DBSCAN-SWA_20 2297195 : 2368349 54 Tetraselmis_virus(10.0%) transposase NA
DBSCAN-SWA_21 2465227 : 2524008 50 Planktothrix_phage(28.57%) tRNA,transposase NA
DBSCAN-SWA_22 2576543 : 2643043 56 uncultured_Caudovirales_phage(40.0%) transposase NA
DBSCAN-SWA_23 2671158 : 2708570 39 Planktothrix_phage(33.33%) transposase NA
DBSCAN-SWA_24 2807697 : 2862214 48 Diachasmimorpha_longicaudata_entomopoxvirus(20.0%) transposase NA
DBSCAN-SWA_25 2870239 : 2927026 41 uncultured_Mediterranean_phage(28.57%) protease,transposase NA
DBSCAN-SWA_26 2957412 : 3001103 41 Planktothrix_phage(33.33%) transposase NA
DBSCAN-SWA_27 3381049 : 3434790 48 Staphylococcus_phage(33.33%) transposase NA
DBSCAN-SWA_28 3440945 : 3500243 47 Acinetobacter_phage(27.27%) tRNA,transposase NA
DBSCAN-SWA_29 3515181 : 3573254 47 Planktothrix_phage(12.5%) tRNA,transposase NA
DBSCAN-SWA_30 4005465 : 4070377 60 Planktothrix_phage(40.0%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage