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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP013076 Bordetella pertussis strain B227 chromosome, complete genome 4 crisprs DEDDh,csa3,cas3,DinG 0 0 33 0

Results visualization

1. NZ_CP013076
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013076_1 685072-685181 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013076_2 2993562-2993678 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013076_3 3712523-3712616 Orphan NA
1 spacers
DEDDh

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013076_4 3893975-3894059 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 27282 : 83589 49 Planktothrix_phage(50.0%) transposase NA
DBSCAN-SWA_2 272868 : 331456 42 uncultured_Mediterranean_phage(20.0%) transposase NA
DBSCAN-SWA_3 347310 : 387725 38 Acinetobacter_phage(10.0%) integrase,transposase attL 335938:335962|attR 383010:383034
DBSCAN-SWA_4 530624 : 647470 101 Acinetobacter_phage(22.22%) tRNA,transposase NA
DBSCAN-SWA_5 651884 : 715716 48 Pandoravirus(12.5%) tRNA,transposase NA
DBSCAN-SWA_6 734497 : 803808 54 Bacillus_phage(20.0%) tRNA,transposase,protease,integrase attL 734499:734558|attR 812925:813972
DBSCAN-SWA_7 812034 : 869076 55 Planktothrix_phage(11.11%) tRNA,transposase,protease,holin NA
DBSCAN-SWA_8 1058949 : 1160293 92 Bacillus_virus(27.27%) tRNA,transposase NA
DBSCAN-SWA_9 1190679 : 1261649 52 uncultured_Mediterranean_phage(25.0%) transposase,protease NA
DBSCAN-SWA_10 1268554 : 1334551 50 Agrobacterium_phage(20.0%) tRNA,transposase NA
DBSCAN-SWA_11 1362918 : 1420129 48 Klosneuvirus(16.67%) transposase NA
DBSCAN-SWA_12 1510362 : 1563542 46 Salmonella_phage(22.22%) tRNA,transposase NA
DBSCAN-SWA_13 1743684 : 1807262 48 Klebsiella_phage(11.11%) transposase,protease NA
DBSCAN-SWA_14 1937926 : 2003129 54 Tupanvirus(25.0%) tRNA,transposase NA
DBSCAN-SWA_15 2102976 : 2176189 60 Bacillus_virus(20.0%) transposase NA
DBSCAN-SWA_16 2189395 : 2233718 44 Bacillus_phage(25.0%) transposase NA
DBSCAN-SWA_17 2299143 : 2355429 51 Lake_Baikal_phage(25.0%) transposase,protease NA
DBSCAN-SWA_18 2358536 : 2425691 59 Klosneuvirus(13.33%) tRNA,transposase NA
DBSCAN-SWA_19 2455300 : 2526454 55 Tetraselmis_virus(10.0%) transposase NA
DBSCAN-SWA_20 2592062 : 2650306 53 Planktothrix_phage(28.57%) tRNA,transposase NA
DBSCAN-SWA_21 2692586 : 2756028 53 uncultured_Caudovirales_phage(40.0%) transposase NA
DBSCAN-SWA_22 2942530 : 3094164 119 uncultured_Mediterranean_phage(15.79%) tRNA,transposase,protease,holin NA
DBSCAN-SWA_23 3115115 : 3187609 58 Bacillus_virus(16.67%) transposase NA
DBSCAN-SWA_24 3201116 : 3254642 43 Bacillus_phage(33.33%) transposase,holin NA
DBSCAN-SWA_25 3277665 : 3327736 44 Vibrio_phage(25.0%) transposase,holin NA
DBSCAN-SWA_26 3379329 : 3422236 34 Planktothrix_phage(50.0%) transposase NA
DBSCAN-SWA_27 3431528 : 3465260 41 uncultured_Caudovirales_phage(21.05%) tRNA,terminase,transposase,tail NA
DBSCAN-SWA_28 3476479 : 3524896 46 Bacillus_phage(40.0%) tRNA,transposase,protease NA
DBSCAN-SWA_29 3668527 : 3723501 44 Lake_Baikal_phage(20.0%) transposase NA
DBSCAN-SWA_30 3813314 : 3867509 53 Paramecium_bursaria_Chlorella_virus(14.29%) transposase,protease NA
DBSCAN-SWA_31 3878125 : 3939014 51 uncultured_Caudovirales_phage(33.33%) tRNA,transposase,protease NA
DBSCAN-SWA_32 3969409 : 4037233 58 Bacillus_phage(22.22%) tRNA,transposase NA
DBSCAN-SWA_33 4065056 : 4100997 33 Sphingobium_phage(33.33%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage