CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP013079	Bordetella pertussis strain C757 chromosome, complete genome	4 crisprs	DEDDh,cas3,csa3,DinG	0	0	28	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP013079_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013079_1

250591-250675

Orphan

Consensus_repeat	Method
GGTGCCTGTCCCCGCGGGGACAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013079_1

>merge|NZ_CP013079|1|250591-250675|CRISPRCasFinder
GGTGCCTGTCCCCGCGGGGACAGATACCGTCTTGGCCGTCAAGCGTTCATGGCGTATGACAGGGTGCCTGTCCCCGCGGGGACAG

>NZ_CP013079|1|1|250591-250675|CRISPRCasFinder
GGTGCCTGTCCCCGCGGGGACAG	ATACCGTCTTGGCCGTCAAGCGTTCATGGCGTATGACAG
GGTGCCTGTCCCCGCGGGGACAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013079.1\|WP_010929703.1\|247881_248580_-\|HAD-IB-family-hydrolase	unknown	unknown	gnl\|CDD\|319796
NZ_CP013079.1\|WP_003814356.1\|240335_241379_-\|TRAP-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270320
NZ_CP013079.1\|WP_010929708.1\|257792_258773_-\|AEC-family-transporter	unknown	unknown	gnl\|CDD\|223751
NZ_CP013079.1\|WP_003814324.1\|258908_259892_+\|tripartite-tricarboxylate-transporter-substrate-binding-protein-BugE	unknown	unknown	gnl\|CDD\|270295
NZ_CP013079.1\|WP_019247543.1\|254380_255766_-\|N-acetylmuramoyl-L-alanine-amidase	unknown	unknown	gnl\|CDD\|182376
NZ_CP013079.1\|WP_003814355.1\|241549_243652_+\|TRAP-transporter-large-permease-subunit	unknown	unknown	gnl\|CDD\|129868
NZ_CP013079.1\|WP_003814332.1\|253599_254238_+\|VTT-domain-containing-protein	unknown	unknown	gnl\|CDD\|182775
NZ_CP013079.1\|WP_010929706.1\|255696_256233_-\|bifunctional-alanine-racemase/tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-ATPase-subunit-type-1-TsaE	unknown	unknown	gnl\|CDD\|223873
NZ_CP013079.1\|WP_003814339.1\|249530_250580_+\|phosphoribosylformylglycinamidine-cyclo-ligase	unknown	unknown	gnl\|CDD\|235439
NZ_CP013079.1\|WP_010929707.1\|256384_257776_+\|class-II-fumarate-hydratase	unknown	unknown	gnl\|CDD\|234779
NZ_CP013079.1\|WP_003814337.1\|250685_251627_-\|tRNA-(adenosine(37)-N6)-dimethylallyltransferase-MiaA	unknown	unknown	gnl\|CDD\|234626
NZ_CP013079.1\|WP_003814351.1\|245062_246019_+\|tripartite-tricarboxylate-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270296
NZ_CP013079.1\|WP_010929705.1\|251623_253513_-\|DNA-mismatch-repair-endonuclease-MutL	unknown	unknown	gnl\|CDD\|234630
NZ_CP013079.1\|WP_010929702.1\|246525_247881_-\|polynucleotide-adenylyltransferase-PcnB	unknown	unknown	gnl\|CDD\|130997
NZ_CP013079.1\|WP_010929709.1\|259956_260856_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176107
NZ_CP013079.1\|WP_003814358.1\|239548_240292_-\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224715
NZ_CP013079.1\|WP_010929704.1\|248576_249278_-\|DnaA-regulatory-inactivator-Hda	unknown	unknown	gnl\|CDD\|236347
NZ_CP013079.1\|WP_010929701.1\|246037_246529_-\|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase	unknown	unknown	gnl\|CDD\|172582
NZ_CP013079.1\|WP_003814363.1\|238116_238527_+\|carboxymuconolactone-decarboxylase-family-protein	unknown	unknown	gnl\|CDD\|131478
NZ_CP013079.1\|WP_003814321.1\|260962_262717_+\|gamma-glutamyltransferase	unknown	unknown	gnl\|CDD\|223482

Protein	Function_ID	Function_description	E-value
NZ_CP013079.1\|WP_010929703.1\|247881_248580_-\|HAD-IB-family-hydrolase	gnl\|CDD\|319796	cd02612, HAD_PGPPase, phosphatidylglycerol-phosphate phosphatase, similar to Escherichia coli K-12 phosphatidylglycerol-phosphate phosphatase C. This family includes Escherichia coli K-12 phosphatidylglycerol-phosphate phosphatase C, PgpC (previously named yfhB) which catalyzes the dephosphorylation of phosphatidylglycerol-phosphate (PGP) to phosphatidylglycerol (PG). This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	3.91431e-64
NZ_CP013079.1\|WP_003814356.1\|240335_241379_-\|TRAP-transporter-substrate-binding-protein	gnl\|CDD\|270320	cd13602, PBP2_TRAP_BpDctp6_7, Substrate-binding domain of a pyroglutamic acid binding DctP subfamily of the tripartite ATP-independent periplasmic transporters; contains the type 2 periplasmic binding protein fold. DctP6 and DctP7 groups of the TRAP transporters that involved in pyroglutamic acid transport. TRAP transporters are a large family of solute transporters ubiquitously found in bacteria and archaea. They are comprised of a periplasmic substrate-binding protein (SBP; often called the P subunit) and two unequally sized integral membrane components: a large transmembrane subunit involved in the translocation process (the M subunit) and a smaller membrane of unknown function (the Q subunit). The driving force of TRAP transporters is provided by electrochemical ion gradients (either protons or sodium ions) across the cytoplasmic membrane, rather than ATP hydrolysis. This substrate-binding domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	1.99378e-85
NZ_CP013079.1\|WP_010929708.1\|257792_258773_-\|AEC-family-transporter	gnl\|CDD\|223751	COG0679, COG0679, Predicted permeases [General function prediction only].	1.13912e-41
NZ_CP013079.1\|WP_003814324.1\|258908_259892_+\|tripartite-tricarboxylate-transporter-substrate-binding-protein-BugE	gnl\|CDD\|270295	cd13577, PBP2_BugE_Glu, Glutamate transporter of Bug (Bordetella uptake gene) protein family; contains the type 2 periplasmic binding fold. The Bug (Bordetella uptake gene) protein family is a large family of periplasmic solute-binding (PBP) receptors present in a number of bacterial species, but mainly in proteobacteria. Bug proteins are the PBP components of the tripartite carboxylate transporters (TTT). Their expansive expansion in proteobacteria indicates a large functional diversity. The best studied examples are Bordetella pertussis BugD, which is an aspartic acid transporter, and BugE, which is glutamate transporter.	4.35876e-158
NZ_CP013079.1\|WP_019247543.1\|254380_255766_-\|N-acetylmuramoyl-L-alanine-amidase	gnl\|CDD\|182376	PRK10319, PRK10319, N-acetylmuramoyl-L-alanine amidase AmiA.	1.25625e-84
NZ_CP013079.1\|WP_003814355.1\|241549_243652_+\|TRAP-transporter-large-permease-subunit	gnl\|CDD\|129868	TIGR00786, TRAP_transporter_permease_protein_SiaT, TRAP transporter, DctM subunit. The Tripartite ATP-independent Periplasmic Transporter (TRAP-T) Family (TC 2.A.56)- DctM subunit TRAP-T family permeases generally consist of three components, and these systems have so far been found in Gram-negative bacteria, Gram-postive bacteria and archaea. Only one member of the family has been both sequenced and functionally characterized. This system is the DctPQM system of Rhodobacter capsulatus (Forward et al., 1997). DctP is a periplasmic dicarboxylate (malate, fumarate, succinate) binding receptor that is biochemically well-characterized. DctQ is an integral cytoplasmic membrane protein with 4 putative transmembrane a-helical spanners (TMSs). DctM is a second integral cytoplasmic membrane protein with 12 putative TMSs. These proteins have been shown to be both necessary and sufficient for the proton motive force-dependent uptake of dicarboxylates into R. capsulatus. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	2.77055e-96
NZ_CP013079.1\|WP_003814332.1\|253599_254238_+\|VTT-domain-containing-protein	gnl\|CDD\|182775	PRK10847, PRK10847, DedA family protein.	1.10927e-69
NZ_CP013079.1\|WP_010929706.1\|255696_256233_-\|bifunctional-alanine-racemase/tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-ATPase-subunit-type-1-TsaE	gnl\|CDD\|223873	COG0802, COG0802, Predicted ATPase or kinase [General function prediction only].	2.28113e-54
NZ_CP013079.1\|WP_003814339.1\|249530_250580_+\|phosphoribosylformylglycinamidine-cyclo-ligase	gnl\|CDD\|235439	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional.	0
NZ_CP013079.1\|WP_010929707.1\|256384_257776_+\|class-II-fumarate-hydratase	gnl\|CDD\|234779	PRK00485, fumC, fumarate hydratase; Reviewed.	0
NZ_CP013079.1\|WP_003814337.1\|250685_251627_-\|tRNA-(adenosine(37)-N6)-dimethylallyltransferase-MiaA	gnl\|CDD\|234626	PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed.	4.17279e-156
NZ_CP013079.1\|WP_003814351.1\|245062_246019_+\|tripartite-tricarboxylate-transporter-substrate-binding-protein	gnl\|CDD\|270296	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family; contains the type 2 periplasmic binding fold. Bug27 binds non-carboxylated solute nicotinamide, in contrast to BugD (aspartic acid transporter) and BugE (glutamate transporter) which both bind aliphatic carboxylated ligands. The Bug (Bordetella uptake gene) protein family is a large family of periplasmic solute-binding (PBP) receptors present in a number of bacterial species, but mainly in proteobacteria. Bug proteins are the PBP components of the tripartite carboxylate transporters (TTT). Their expansive expansion in proteobacteria indicates a large functional diversity.	6.01101e-118
NZ_CP013079.1\|WP_010929705.1\|251623_253513_-\|DNA-mismatch-repair-endonuclease-MutL	gnl\|CDD\|234630	PRK00095, mutL, DNA mismatch repair endonuclease MutL.	0
NZ_CP013079.1\|WP_010929702.1\|246525_247881_-\|polynucleotide-adenylyltransferase-PcnB	gnl\|CDD\|130997	TIGR01942, pcnB, poly(A) polymerase. This model describes the pcnB family of poly(A) polymerases (also known as plasmid copy number protein). These enzymes sequentially add adenosine nucleotides to the 3' end of RNAs, targeting them for degradation by the cell. This was originally described for anti-sense RNAs, but was later demonstrated for mRNAs as well. Members of this family are as yet limited to the gamma- and beta-proteobacteria, with putative members in the Chlamydiacae and spirochetes. This family has homology to tRNA nucleotidyltransferase (cca).	4.58369e-147
NZ_CP013079.1\|WP_010929709.1\|259956_260856_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176107	cd08415, PBP2_LysR_opines_like, The C-terminal substrate-domain of LysR-type transcriptional regulators involved in the catabolism of opines and that of related regulators, contains the type 2 periplasmic binding fold. This CD includes the C-terminal substrate-domain of LysR-type transcriptional regulators, OccR and NocR, involved in the catabolism of opines and that of LysR for lysine biosynthesis which clustered together in phylogenetic trees. Opines, such as octopine and nopaline, are low molecular weight compounds found in plant crown gall tumors that are produced by the parasitic bacterium Agrobacterium. There are at least 30 different opines identified so far. Opines are utilized by tumor-colonizing bacteria as a source of carbon, nitrogen, and energy. NocR and OccR belong to the family of LysR-type transcriptional regulators that positively regulates the catabolism of nopaline and octopine, respectively. Both nopaline and octopalin are arginine derivatives. In Agrobacterium tumefaciens, NocR regulates expression of the divergently transcribed nocB and nocR genes of the nopaline catabolism (noc) region. OccR protein activates the occQ operon of the Ti plasmid in response to octopine. This operon encodes proteins required for the uptake and catabolism of octopine. The occ operon also encodes the TraR protein, which is a quorum-sensing transcriptional regulator of the Ti plasmid tra regulon. LysR is the transcriptional activator of lysA gene encoding diaminopimelate decarboxylase, an enzyme that catalyses the decarboxylation of diaminopimelate to produce lysine. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	2.62875e-38
NZ_CP013079.1\|WP_003814358.1\|239548_240292_-\|GntR-family-transcriptional-regulator	gnl\|CDD\|224715	COG1802, GntR, Transcriptional regulators [Transcription].	5.58304e-45
NZ_CP013079.1\|WP_010929704.1\|248576_249278_-\|DnaA-regulatory-inactivator-Hda	gnl\|CDD\|236347	PRK08903, PRK08903, DnaA regulatory inactivator Hda; Validated.	2.81236e-100
NZ_CP013079.1\|WP_010929701.1\|246037_246529_-\|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase	gnl\|CDD\|172582	PRK14092, PRK14092, 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase.	2.78166e-87
NZ_CP013079.1\|WP_003814363.1\|238116_238527_+\|carboxymuconolactone-decarboxylase-family-protein	gnl\|CDD\|131478	TIGR02425, putative_gamma-carboxymuconolactone_decarboxylase, 4-carboxymuconolactone decarboxylase. Members of this family are 4-carboxymuconolactone decarboxylase, which catalyzes the third step in the catabolism of protocatechuate (and therefore the fourth step in the catabolism of para-hydroxybenzoate, of 3-hydroxybenzoate, of vanillate, etc.). Most members of this family are encoded within protocatechuate catabolism operons. This protein is sometimes found as a fusion protein with other enzymes of the pathway, as in Rhodococcus opacus, Streptomyces avermitilis, and Caulobacter crescentus. [Energy metabolism, Other].	1.36265e-47
NZ_CP013079.1\|WP_003814321.1\|260962_262717_+\|gamma-glutamyltransferase	gnl\|CDD\|223482	COG0405, Ggt, Gamma-glutamyltransferase [Amino acid transport and metabolism].	0

>NZ_CP013079.1|WP_003814339.1|249530_250580_+|phosphoribosylformylglycinamidine-cyclo-ligase
MTNQHSAPLTYRDAGVDIDAGDALVDRIKPLAARTMRPGVLAGIGGFGALFEVPKKFREPVLVSGTDGVGTKLRLAFDWNRHDTVGIDLVAMSVNDILVQGAEPLYFLDYFACGKLSVDTAAAVVGGIARGCELAGCALIGGETAEMPGMYPDGEYDLAGFAVGAVDKSAIIDGKSIQPGDVVLGLASSGAHSNGYSLVRKILERAGARPDQDFHGQPLVDVVMAPTRIYVKQVLAALDRHGPAIKGLAHITGGGLLDNVPRILQPGMAAQLQRDGWEMPKLFQWLQQQGSVADAEMHRVFNCGIGMVLVVAADQADAVAATLREQGEIVNRIGEIVPQQDGMAQTVVV
>NZ_CP013079.1|WP_010929704.1|248576_249278_-|DnaA-regulatory-inactivator-Hda
MNRQLLLDVLPAPAPALNNYIAGPNGQALAAAHALTAGRAIYLWGPAGCGRTHLLRGLSARPEAIYIDAARAAQSLRELAEADSTAPMPRLVAVDDVHRMDDARQAGLFALYNRWRESAATGRAFALAVSGDRAPMSLPLREDLRTRLGWDLVFRLDPLSDADKLAALTAQAAERGLQLAPEVINWMLTHHERDIRKLAALLDALDRYSLATGRPITIPLLRAMLADPHSQAT
>NZ_CP013079.1|WP_010929703.1|247881_248580_-|HAD-IB-family-hydrolase
MTTRRLALFDLDHTLLPLDSDYQWADFLARTGRAGDPAEARRRNDDLMERYNRGELTAEQAAEFMLGLLAAHSPVELAAWHEEFMRDVIRPSLTVQAVDVVRGHLAAGDLCALVTATNSFVTAPIARAFGVQHLIATDPEYRDGRYTGRIEGTPSFREGKVVRVNQWLAGMGLALGDFAESYFYSDSVNDVPLLEAVTRPIAANPSPGLREIAQARGWQVIDLFDHLEDAKS
>NZ_CP013079.1|WP_010929702.1|246525_247881_-|polynucleotide-adenylyltransferase-PcnB
MITETIRKFVGRLFAPALRGPQRIGAERHGIDRRNVSRHAIKVCDVLRQHGYEAYIVGGAVRDLIVGLEPKDFDVATNATPEQIRPLFRRARIIGRRFQLVHVVFGQEIIETSTFRAPASDDQETDEHGRILRDNVFGSQEEDAARRDFTMNALYYDPHTEEVIDYHQGVQDLKKRQVRIIGDPVKRYREDPVRMLRAVRFAAKLNGSIDTATRQPIRTMASLIENVPASRLFDEMLKLLTCGHAMDCLRQLRNDGLHHGLLPLLDVVLEQPGGENFVELALERTDARVRAGKTISPSFLFAALLWQLVDVRWKQLRAQGEHNIPALVQAADSVLDEQTEKLAIQRRFSSDMREIWFMQPRFERRAGKTIYRMLEQPRFRAACDFLQLRAAAGEFDSVLAQWWMDLANGDDATRAEMIEETAHLPRETGDAPAQKRRRPRRRPSNRPREPQ
>NZ_CP013079.1|WP_010929701.1|246037_246529_-|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase
MNGSPASTLAYVGLGASLGDAAATLRSVLAELAAAPGILACKASRLYRTAPVEAQGPDFVNAVAALDTTLAPLDLLDLLQALEQRHGRERPYRNAPRTLDLDLLLYGEQAIDHPRLSVPHPRMHERAFVLAPLCELVPALRLAQGDCAALLAALEDQAIEPLR
>NZ_CP013079.1|WP_003814351.1|245062_246019_+|tripartite-tricarboxylate-transporter-substrate-binding-protein
MKKRIWGTLLAAAMTVGSGAAHAGYPDKAVRIVVPFAAGGGVDALARPFAKELGDILGQSIVVENKPSNTGQIGATDVARAAADGYTLLLSSAAFATTPAFYPQVPYDPVKDFSPVMIMAAAPQVLVASNRFKAASLPDVLAQARQSDRINFALSASTGIQALATAMLAGQGGVTFMTIPYKGAGAAFMDLISGEVDLMIDNPASSLVHVRAGKLRVLATTGSKRMAILPDVPTVAETLPGFEARNWFVLAAPQGTPPAVIQKLNEASARALNTPAMRQMLERDGIDLVADSPAHAAAFLQDEIAKWGKVVKEGNLQP
>NZ_CP013079.1|WP_003814355.1|241549_243652_+|TRAP-transporter-large-permease-subunit
MSSIEMPAPVMPIEPAELAGASPYPLAIDQDFCLIRWMAAISRACGALATVALLLMALSMCYEIFSRYLFNAPTAWATEISGYLLVATVFFGLAAAQASNSHVQVELWIDRLSAPVRLRVELLCQWLALLFCVVLGWQMASFNVREYLNDTRDWGLLSTPQWMPELAVSVGMVVFCMSILVDIYRLSPPAQAWRRWLTPALLALLAAALVALGANAVPMAAGGRFDWGMALIVAALLACAWAWSGVRTLAHVVLVVGGCAVLYGLARGQSLGWVAFLLVASMMLLLFLGVRIGVALGLVGLFGVYFLLSRPQLSLLAERAWSSTNTFTLTAVPMFIFMGGLLLRSGITAGMFDALVRWFGRAPGGLAHASAGASAVFAAVSGSSLATAATLGKVACPDMIERGYSPRLTYGVAAAGATLGILIPPSIPMIIYGTTVGASVTHLFLAGMLPGLLLMACFMLGALVWALAVPGSAPVARAYTLREKLSASRGMVPFVAIIGAVLGSMYTGVATPTEAAAIGAVSAFVLCLVRRQLSWRALFEIAHDSAKVTALLLLIVVGAGIFSWVFDYLRLPREVVNLIQGADLSPALIVAAMVLAYLVLGMFVESIAMMLMTLPVTYPIAMSLGLDPIWFGVFLVLMIELGLITPPVGMVLFVLRSMNEKARFTDIIRGALPFVLIILLFLCLIYIYPQIVMWLPQQVK
>NZ_CP013079.1|WP_003814356.1|240335_241379_-|TRAP-transporter-substrate-binding-protein
MSQRFPLPRGFQAALAAAALCTASWSGAAAAQTYDLTMAVITSPGDGYSILTASVPERVAKATDGKVKVTVSDSLVPPAQIATAVREGRVDMSAALHTYLAADEPRMGIFNLPGLINNIQEYKQVCDAFWCEDTRKIWKDKWNAIVLAEGAWCTQQLFSKDPIHKVEDFKGKRLRVHNPQTAEVVNALGGKPVAMPTTEIFPALERGVIDGLFISTCVGGSLEFWRIAKNVQNWSLGPINGWAILANPDSWQKLPADVQKQVQGAMDALQQEAFGNYDTFVSNAQQEMMKKGVTFWVAPEEERAKLMQQQYIGPSYEAWNKRAKQVGFDGPAYLDRVRTTLGKSASN
>NZ_CP013079.1|WP_003814358.1|239548_240292_-|GntR-family-transcriptional-regulator
MPFPFCNTNRMTSPAAPEGEFKVQRVASVLRHSVTESIRNAILVGRFRPGERLPERELCEMTGVSRTLVREALRQLESEGLIVVIPHRGPVVERLSPEQARGIYQVREELEGLACQLFAEHATEPQLAALQEAFQALKRALTRGTPLEQIAAKNAFYQQLLDGAGNEALTTTLRLLNSRVMLLRSTSMQAPGRAKHSVAELSNLLQALVARDGKAARKAGSLHVRNAASVAIAILQDSLADAAATAE
>NZ_CP013079.1|WP_003814363.1|238116_238527_+|carboxymuconolactone-decarboxylase-family-protein
MALRPEFQTEQFQKGLAVRRAVVGDAYVDKSLNSADDLTASLQKLVTEYCWGEVWTRPGLERKTRSFLNLAMLIALNRPNELRLHLRGAINNGVTKDEIVEVVLQAAIYCGVPAALDAMKAVREVVETMEKEGAFA
>NZ_CP013079.1|WP_003814337.1|250685_251627_-|tRNA-(adenosine(37)-N6)-dimethylallyltransferase-MiaA
MTPRAIICLAGPTAAGKSASTLALAQRWPLEIINVDSATIYRGMDIGTAKPSAAERAQVPQHLLDIRDPAQSYSAAEFRADALRLIAEIHARGRIPLLAGGTMLYYKALREGLDDLPQADPALRAELEARAARLGWPALHAELALLDPATAARLSPNDSQRIQRALEICRLAGQPMSALLQGERRGDAPSPYRYVTLSLEPSERAALHARIAQRFDAMLAAGLVEEVRGLHARPDLHPGLPSVRCVGYRQMWSYLDGDIDLDTAREQGVAATRQLAKRQLTWLRAQPERVIIDCLAGDAVARTVDAMARALPD
>NZ_CP013079.1|WP_010929705.1|251623_253513_-|DNA-mismatch-repair-endonuclease-MutL
MSDRRPIATLPDLLISQIAAGEVIERPASVLKEILENAIDAGARAIEVRLEGGGIRRIAVTDDGSGIPPEELPLALTRHATSKIRSLDELESVASMGFRGEALASIASVADLTIISRTRGAEHAWQIDGGSLQVSPASGPPGTTIDVRQLFDRVPARRKFLRSEATEFGHCVDAMERIALAHPEVAFRLFHHDRAQRQWLPADHGQRIRDVLGAEFVGHVLPVLAAAGAIALMGMVTRPTAARARADRQYLYVNGRFVRDRTVSHALRSAYADVLHGDRQPAYVLYLDIDPGAVDVNVHPAKHEVRFRDSGAVHRFVSQVVGQTLAQTGGAEAVPAGVPDGAAPDTAYAGEPAAAAPGLAEPRAPYPAAYPSPGQSPYQGSPARPHTQVPFRLHGEPAGIPATDWQSLYRPLPGDAAPAATALRAAPATPLPTADEHPLGQALAQLHGIYILAQNSRGLVLVDMHAAHERVVYEQLKRALDDRALPRQDLLVPVVFHAAEKDVALVEEHETQLNELGFEMRPSGPASIAVRSVPALLARGDIESLARAVLRDLGAVGVSRLLTEQRNELLSTMACHGSVRANRRLTLEEMNALLRQMEITERADQCNHGRPTWVQWSVNDLDKLFLRGQ
>NZ_CP013079.1|WP_003814332.1|253599_254238_+|VTT-domain-containing-protein
MLDFFNMVLHIDQTLGIWVEQYGVWVYLVLFLIVFAETGLVVLPFLPGDSLLFIAGAFGATGHMDPVLTAALLIVAAISGNTVNYTIGRYIGPRVFSMNLRFLDRNALMRTHAFYEKHGGKTIVMSRFIPVIRTFAPFVAGVADMRLARFQLFNIGGALLWVISLVAAGYFFGNIPLVREHLNTIVLIGLGAAIVPVVIGALVRLLQVRRGQ
>NZ_CP013079.1|WP_019247543.1|254380_255766_-|N-acetylmuramoyl-L-alanine-amidase
MVERDCPPAHGALSPRAAARRRLISVAATLLVLPVVPRLAHAATILAVRTWPADEYTRVTLELDSELKAEHFTLENPHRLVVDIEGLSVNAALNDLVSKVRHDDPYIQGLRVAQNRPNVVRLVFDLKQSVAPQVFTLKPVADYQYRLVLDLYPKVAQDPLMAILNKQSGPDVDDPLARVLDEIARNQPAPDQPAAPLARGQEPAPALPAPPIKPLPAPGRSASRKRMLTIALDPGHGGEDPGAIGRSGLREKDVVLRIARRLKTLIDAQPYMRAYLTRDDDYFVPLHVRVQKARRVRADLFVSIHADAFIKPTANGSSVFALSERGASSTQARWLADKENAADLIGGVNLGSHDRQVAKVLLDLSTTAQINDSLKVGSAFLDEIKKINRLHKNRVEQAGFAVLKAPDIPSILVETAFISNPKEEALLRSAAHQEKLAQAMMTGIDRYFTANPPLARVGDVS
>NZ_CP013079.1|WP_010929706.1|255696_256233_-|bifunctional-alanine-racemase/tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-ATPase-subunit-type-1-TsaE
MSAPPTTLCLHLPDEAATENLARQLAPLVDGRRGGQPGGQIHLQGDLGAGKTAFTRALLRECGIQGRIKSPSYALLESYKVSNLYFYHLDFYRFSDSREWLDAGFRDLLRDDAVVLIEWPERAAGLLPPPDLLISLAYADQGRDASLTAHTARGQTWLNAIVPPPTARSLPAPPPADA
>NZ_CP013079.1|WP_010929707.1|256384_257776_+|class-II-fumarate-hydratase
MKTRTEKDTFGPIEVPEQHLWGAQTQRSLHFFAISTEKMPVPLVAAMARLKRAAAKVNAELGELDPQVADAIMRAADEVIAGKWPDEFPLSVWQTGSGTQSNMNMNEVLANRASELLGGERGEGRKVHPNDHVNRGQSSNDTFPTAMHVAAAVEVEHRVLPALKALRGTLAAKSAAFYDIVKIGRTHLQDATPLTLGQEISGYVAQLDLAEQQIRATLAGLHQLAIGGTAVGTGLNAHPQFSAKVSAELAHDTGSAFVSAPNKFQALASHEALLFAHGALKTLAAGLMKIANDVRWLASGPRSGLGEISIPENEPGSSIMPGKVNPTQCEAVTMLAAQVMGNDVAINVGGASGNFELNVFKPLVIHNFLQSVRLLADGMVSFDKHCAAGIEPNRERITELVERSLMLVTALNPHIGYDKAAQIAKKAHKENLSLKEAALALGHLTEAQFAEWVVPGDMTNARR
>NZ_CP013079.1|WP_010929708.1|257792_258773_-|AEC-family-transporter
MSENSSLRRDAEAPLLSIFLPGSMSVALLVLPDFMLVALGWALRHKLGFSREFFAGTERMVYFVLFPALLFQSILRTPISAGHAMQLLQATAALMACGVALAWLAGPVLRPAPVALASAAQCGYRFNTYIGLALAASLAGGPGQTIMALIVGFAVPMANVAAVYGLARHSGNGLLRELARNPLLVSTLLSLACNLAGLSLPGPIDTVMARLGAAALALGIMCVGASLAWEGGKGHGRLIGWMLAVKLAAMPSAALGIAWALGLPALETRMLVLFSALPTASAAYVLAMRMGGDGRMVAVLISLGTLASAATIPLWLTAAAGLGAPN
>NZ_CP013079.1|WP_003814324.1|258908_259892_+|tripartite-tricarboxylate-transporter-substrate-binding-protein-BugE
MNKVRTLVQAIAVATGLVAAAGAQAADAYPSKAIRVIVPFAPGGSTDIIARLVTQRMSQELGQPMVVENKGGAGGAIGASEAARAEPDGYTLSIATVSTMAVNPACRPKDLPYDPIKDFQPVTNFANTANVVAVNPKFPAKDFKGFLEELKKNPGKYSYGSSGTCGVLHLMGESFKMATGTDIVHVPYKGSGPAVADAVGGQIELIFDNLPSSMPQIQAGKLRAMAIAWPTRIDAIKDVPTFADAGFPVLNQPVWYGLLAPKGTPMDVVNKLRDAAVVALKDPKVIKALDDQGSAPSGNTPEEFAKEIKEQYDWAQDVVKKQNIKLD
>NZ_CP013079.1|WP_010929709.1|259956_260856_-|LysR-family-transcriptional-regulator
MRLRHIEIFEAIRRTGSLTEAAAALHISQPAASKLLAHAEAQLGFKLFERVKGRLVATREAEILAPEVARLNQDLGSVRRLAASLRDRPHGHLRLGCAPALGLGLLPGVVRASRDAQPGITFDIHTHHSAELVQGLLAHELDLAITFDANNHPGLTRTSLGHTELVHLSRLPGAGTTRLQELGGETLIVLDARDASGSLLQMALDAQGLAPRVAIQVQTHYVACALAEAGCGDAVVDAITARAMLRPGMALRRLEPALRVPISVMTRSQDALSTLHHDFIERLRQACSVLQAQPAPQPE
>NZ_CP013079.1|WP_003814321.1|260962_262717_+|gamma-glutamyltransferase
MPLRTLLAALCAAAICQAPAWAREAPGVAREDVNPEIASARSERAQAHAQRYMIATANPLASEAGYRILRAGGSATDAIIAAQLVLNLVEPQSSGIGGGAFMVHYDRGAGELRVYDSRETAPAAARPDRFLREGKPLSYAESVNNGRAVGTPGLLRGLELAHRQHGKLPWQALFEPAIAMAEQGFAVSPRLHESIAGDKALAAQPAAARYFYGPDGQAWPVGHRLRNPEFAATLRSIAREGADAFYRGPIARDIVAAVRAHPTPGDLAEADLAGYRAVVREPVCGLYRGYRLCGAPPPSSGPLAVLQMLGELEQYPLARMRPGSVEAVHYFSEAGRLAFADRDFYVADPAFVDVPVRALLDPAYLRQRGALIRPDRSMKTALPGDPQGLLAERARDDAIEVPSTSHLVAVDAAGNVVSMTSTIEAAFGSKIFVRGFLLNNEMTDFSSSYRDPEGRLVANRVEPGKRPRSSMAPMIVFRAGKPVLALGSPGGSAIINYVAKTLVGVLDWKLDVQQAIALPNLGSRNKETELERGTALEALAPALRRMGHEVRITDFPSGIQGIVIGPHGLAGGADPRREGLALGD

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Crispr_ID: NZ_CP013079_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013079_2

623999-624108

Orphan

Consensus_repeat	Method
GGGGACAGATACCGTCTTGGCCGTCAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013079_2

>merge|NZ_CP013079|2|623999-624108|CRISPRCasFinder
GGGGACAGATACCGTCTTGGCCGTCAAGCGTCGATGGCGTACAGCAGTGTGCCTGTCCCGGCGGGGACAGGCACCCTCCCTGCGGGGACAGATACCGTCTTGGCAGTCAA

>NZ_CP013079|2|2|623999-624108|CRISPRCasFinder
GGGGACAGATACCGTCTTGGCCGTCAA	GCGTCGATGGCGTACAGCAGTGTGCCTGTCCCGGCGGGGACAGGCACCCTCCCTGC
GGGGACAGATACCGTCTTGGCAGTCAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013079.1\|WP_010927090.1\|627660_628461_-\|hydroxyacylglutathione-hydrolase	unknown	unknown	gnl\|CDD\|274569
NZ_CP013079.1\|WP_010931357.1\|622786_623467_-\|tellurite-resistance-TerB-family-protein	unknown	unknown	gnl\|CDD\|377342
NZ_CP013079.1\|WP_010927010.1\|617134_618559_-\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|236531
NZ_CP013079.1\|WP_010931353.1\|638741_639830_-\|NAD(P)H-binding-protein	unknown	unknown	gnl\|CDD\|187652
NZ_CP013079.1\|WP_019247959.1\|634462_637441_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|375438
NZ_CP013079.1\|WP_003814250.1\|610927_611743_-\|septum-site-determining-protein-MinD	unknown	unknown	gnl\|CDD\|225447
NZ_CP013079.1\|WP_010931354.1\|629294_629762_+\|ribonuclease-HI	unknown	unknown	gnl\|CDD\|178927
NZ_CP013079.1\|WP_010931362.1\|611855_612734_-\|septum-site-determining-protein-MinC	unknown	unknown	gnl\|CDD\|178806
NZ_CP013079.1\|WP_010931355.1\|628481_629252_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|369777
NZ_CP013079.1\|WP_003818344.1\|632657_633536_-\|fatty-acid-desaturase	unknown	unknown	gnl\|CDD\|366126
NZ_CP013079.1\|WP_003814739.1\|625360_626146_-\|enoyl-ACP-reductase-FabI	unknown	unknown	gnl\|CDD\|180789
NZ_CP013079.1\|WP_003814742.1\|623604_623997_+\|OsmC-family-protein	unknown	unknown	gnl\|CDD\|224679
NZ_CP013079.1\|WP_010931070.1\|637794_638745_+\|IS481-like-element-IS481-family-transposase	unknown	unknown	gnl\|CDD\|366234
NZ_CP013079.1\|WP_003814239.1\|618558_619260_-\|response-regulator	unknown	unknown	gnl\|CDD\|181883
NZ_CP013079.1\|WP_010931356.1\|626240_627650_-\|transglycosylase-SLT-domain-containing-protein	unknown	unknown	gnl\|CDD\|182727
NZ_CP013079.1\|WP_010930179.1\|620764_621715_+\|IS481-like-element-IS481-family-transposase	unknown	unknown	gnl\|CDD\|366234
NZ_CP013079.1\|WP_005013747.1\|629758_630709_-\|IS481-like-element-IS481-family-transposase	unknown	unknown	gnl\|CDD\|366234
NZ_CP013079.1\|WP_003820957.1\|612845_614609_-\|glutamine--tRNA-ligase/YqeY-domain-fusion-protein	unknown	unknown	gnl\|CDD\|235424
NZ_CP013079.1\|WP_010931361.1\|614724_616065_+\|cytochrome-ubiquinol-oxidase-subunit-I	unknown	unknown	gnl\|CDD\|376587
NZ_CP013079.1\|WP_023994844.1\|621810_622782_+\|tripartite-tricarboxylate-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270296

Protein	Function_ID	Function_description	E-value
NZ_CP013079.1\|WP_010927090.1\|627660_628461_-\|hydroxyacylglutathione-hydrolase	gnl\|CDD\|274569	TIGR03413, GSH_gloB, hydroxyacylglutathione hydrolase. Members of this protein family are hydroxyacylglutathione hydrolase, a detoxification enzyme known as glyoxalase II. It follows lactoylglutathione lyase, or glyoxalase I, and acts to remove the toxic metabolite methylglyoxal and related compounds. This protein belongs to the broader metallo-beta-lactamase family (pfam00753). [Cellular processes, Detoxification].	2.85848e-146
NZ_CP013079.1\|WP_010931357.1\|622786_623467_-\|tellurite-resistance-TerB-family-protein	gnl\|CDD\|377342	pfam04391, DUF533, Protein of unknown function (DUF533). Some family members may be secreted or integral membrane proteins.	5.6465e-62
NZ_CP013079.1\|WP_010927010.1\|617134_618559_-\|HAMP-domain-containing-protein	gnl\|CDD\|236531	PRK09467, envZ, osmolarity sensor protein; Provisional.	3.78414e-42
NZ_CP013079.1\|WP_010931353.1\|638741_639830_-\|NAD(P)H-binding-protein	gnl\|CDD\|187652	cd08948, 5beta-POR_like_SDR_a, progesterone 5-beta-reductase-like proteins (5beta-POR), atypical (a) SDRs. 5beta-POR catalyzes the reduction of progesterone to 5beta-pregnane-3,20-dione in Digitalis plants. This subgroup of atypical-extended SDRs, shares the structure of an extended SDR, but has a different glycine-rich nucleotide binding motif (GXXGXXG) and lacks the YXXXK active site motif of classical and extended SDRs. Tyr-179 and Lys 147 are present in the active site, but not in the usual SDR configuration. Given these differences, it has been proposed that this subfamily represents a new SDR class. Other atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	1.76863e-97
NZ_CP013079.1\|WP_019247959.1\|634462_637441_-\|hypothetical-protein	gnl\|CDD\|375438	pfam17936, Big_6, Bacterial Ig domain. This domain is found in a wide variety of extracellular bacterial proteins often in multiple tandem copies.	1.32844e-07
NZ_CP013079.1\|WP_003814250.1\|610927_611743_-\|septum-site-determining-protein-MinD	gnl\|CDD\|225447	COG2894, MinD, Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning].	7.6448e-163
NZ_CP013079.1\|WP_010931354.1\|629294_629762_+\|ribonuclease-HI	gnl\|CDD\|178927	PRK00203, rnhA, ribonuclease H; Reviewed.	4.07937e-102
NZ_CP013079.1\|WP_010931362.1\|611855_612734_-\|septum-site-determining-protein-MinC	gnl\|CDD\|178806	PRK00030, minC, septum site-determining protein MinC.	3.47756e-166
NZ_CP013079.1\|WP_010931355.1\|628481_629252_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|369777	pfam08241, Methyltransf_11, Methyltransferase domain. Members of this family are SAM dependent methyltransferases.	9.0439e-10
NZ_CP013079.1\|WP_003818344.1\|632657_633536_-\|fatty-acid-desaturase	gnl\|CDD\|366126	pfam00487, FA_desaturase, Fatty acid desaturase.	2.20669e-12
NZ_CP013079.1\|WP_003814739.1\|625360_626146_-\|enoyl-ACP-reductase-FabI	gnl\|CDD\|180789	PRK06997, PRK06997, enoyl-[acyl-carrier-protein] reductase FabI.	1.22848e-177
NZ_CP013079.1\|WP_003814742.1\|623604_623997_+\|OsmC-family-protein	gnl\|CDD\|224679	COG1765, COG1765, Predicted redox protein, regulator of disulfide bond formation [Posttranslational modification, protein turnover, chaperones].	4.86152e-16
NZ_CP013079.1\|WP_010931070.1\|637794_638745_+\|IS481-like-element-IS481-family-transposase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	5.27808e-22
NZ_CP013079.1\|WP_003814239.1\|618558_619260_-\|response-regulator	gnl\|CDD\|181883	PRK09468, ompR, osmolarity response regulator; Provisional.	4.05363e-90
NZ_CP013079.1\|WP_010931356.1\|626240_627650_-\|transglycosylase-SLT-domain-containing-protein	gnl\|CDD\|182727	PRK10783, mltD, membrane-bound lytic murein transglycosylase D; Provisional.	5.28635e-76
NZ_CP013079.1\|WP_010930179.1\|620764_621715_+\|IS481-like-element-IS481-family-transposase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	7.3142e-23
NZ_CP013079.1\|WP_005013747.1\|629758_630709_-\|IS481-like-element-IS481-family-transposase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	9.05216e-23
NZ_CP013079.1\|WP_003820957.1\|612845_614609_-\|glutamine--tRNA-ligase/YqeY-domain-fusion-protein	gnl\|CDD\|235424	PRK05347, PRK05347, glutaminyl-tRNA synthetase; Provisional.	0
NZ_CP013079.1\|WP_010931361.1\|614724_616065_+\|cytochrome-ubiquinol-oxidase-subunit-I	gnl\|CDD\|376587	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I. This family are the alternative oxidases found in many bacteria which oxidize ubiquinol and reduce oxygen as part of the electron transport chain. This family is the subunit I of the oxidase E. coli has two copies of the oxidase, bo and bd', both of which are represented here In some nitrogen fixing bacteria, e.g. Klebsiella pneumoniae this oxidase is responsible for removing oxygen in microaerobic conditions, making the oxidase required for nitrogen fixation. This subunit binds a single b-haem, through ligands at His186 and Met393 (using SW:P11026 numbering). In addition His19 is a ligand for the haem b found in subunit II.	2.21087e-123
NZ_CP013079.1\|WP_023994844.1\|621810_622782_+\|tripartite-tricarboxylate-transporter-substrate-binding-protein	gnl\|CDD\|270296	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family; contains the type 2 periplasmic binding fold. Bug27 binds non-carboxylated solute nicotinamide, in contrast to BugD (aspartic acid transporter) and BugE (glutamate transporter) which both bind aliphatic carboxylated ligands. The Bug (Bordetella uptake gene) protein family is a large family of periplasmic solute-binding (PBP) receptors present in a number of bacterial species, but mainly in proteobacteria. Bug proteins are the PBP components of the tripartite carboxylate transporters (TTT). Their expansive expansion in proteobacteria indicates a large functional diversity.	2.71001e-129

>NZ_CP013079.1|WP_003814742.1|623604_623997_+|OsmC-family-protein
MTIQVRANTPGGLQYTATAEGHELPLAMPQPQGEGPDPHDYFDTALGGCKALTLMVYAQRKGLPLQAVDVDVVRDASEERKGIYRLTAKLKLHGDLDDAQIDELLKVADKCPLHKLMTATDIQVSTIVVE
>NZ_CP013079.1|WP_010931357.1|622786_623467_-|tellurite-resistance-TerB-family-protein
MSARQLLDQLLQSGQSLMQGAGAQAQQATQGGKGTFLAGLGGGALGAGALGLLLGSKKARKIGGKVAMYGGMAALGALAYRAYDQYQRNQAGGAAAPAPQTLDRLPPAPAEQHSNAVLVAMIGAAKADGHIGPDERQLLETELAKLSGDAGDRAWLEAELARPLDPAVIAQQARTPEMGAEMYLASLLVADEQSFMERAYLDELARQLKLPAELKQQLEAQVPAAA
>NZ_CP013079.1|WP_023994844.1|621810_622782_+|tripartite-tricarboxylate-transporter-substrate-binding-protein
MKSQVSILLAGCLLGAGAAAAQAPATYPDHAITIVVTFPPGGGTDLLARKLGAAMQQRLGQPVVVENRPGASGNIGARAVAEARPDGYTLLMVNSSFAVNPGVFRNLDFSPTRDFTAVINVAYVPSVIVTAEPAGDAGLPERLRQADTQSRTLAFASCGNGTPQHLAGEMLRQASGAWLQHVPYRGCGPALTDVLSRQVPLGIVTASSAAPFIHAGKLRALAVTSAQRSPLLPDVPTVAEQGAPGYELDQWHGLLAPAGTPPAVIQRLYEALSAIVAEPAMRRELESLGFNPVSEGPERFEALVQADIARFAALTARMGLRAD
>NZ_CP013079.1|WP_010930179.1|620764_621715_+|IS481-like-element-IS481-family-transposase
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWQRPHQGIGRAVPISRLNLDEYNLLTVHS
>NZ_CP013079.1|WP_003814239.1|618558_619260_-|response-regulator
MDNPHTKLLVVDDDPALRQLLADYLNRHGYDTLLAPDASDLAARITRYAPDLLVLDRMLPGGDGADACRRLRDQGEDIPVILLTARDEAVDRIIGLEAGADDYLGKPFDPRELLARIEAVLRRKRGPSALTKDAPVSFGPFVFDPATRQLLRDDTPVKLTGGEINLLEALVRNAGKPLSRERLLALARDDDGGERNDRAIDIAILRLRRAIEEDPKQPRWIQTVWGIGYRFSP
>NZ_CP013079.1|WP_010927010.1|617134_618559_-|HAMP-domain-containing-protein
MKLLRLPAPRSLRMRLILLVLGSVLLAQAATLATVSYFRHKFMEDVAIDYIATTIRTLRASLSQVPTDERAEFVRQASGNQWRLWSRSLPADARLQRWHRGPQEDEAERERMRREYERRHPPPDDIRRDLRGLVSELNERLSDGTRVALSRGPRPEIFISLAPSPSPDDAPPLREWLVIPLERLDPPVATPLIAFWVGGIGLVLLLAAWFSWHITRPLTRLADAADQLAAGQPQRVEPSGPHETRVLGERFNAMLDALAESDSVRRTLLSGLPHDLKGPLSRMWLRIEMADDPTLKEGLRKDLQDMQHMVDQFIGFVRGTDPAAYRYAPLALGEWLAERVGAWQGAGTDIRLQAPDNGALGIQADAVALGRLLDNLIGNALHHGAPPVEVSLRRDADMAVLEVSDHGPGIAPERRTEALRPFARLDDARTRTGNVGLGLALAEAIARAHGGGLELRQAPSGGLLVRITLPLAKA
>NZ_CP013079.1|WP_010931361.1|614724_616065_+|cytochrome-ubiquinol-oxidase-subunit-I
MNIPPLLLARAQFTASLGFLALFLAISLALAWLLLFFKLRARWSGQSGWTAAYRFWVRIFALAFVLALACAVPVLIQLGSLWSGLMDKIGNLAGPLLGYGVLSIFIVKSCFLGVMLFGQRRVSDAAHTLAVLMVAIGQLVAVGWVLALFSWLQTPDGAVLIDGRYQVYDWRAVVLNPSFGWRLGLTVLGAFLTAGFLMLGVTAMQALRRPLDDGERHAFRAGLTVALLASLLLGPVAAGMGEVTARLQPAKAAAAAGFWHSGAEPELVVFGWPSARAQANLAAVSLAGAGGRWLHRDASLGYLGLDKFSGMQPPVAFTFWSLRLALGLGLLMLAASCATLALTCRRGFDPVALPRWWLRVLSLLMFAGALGVVATWCYDLAGMQPYAVNRAVTQSEVLGPVTTPALLYSLAGHIALYAVLLAAFVGMLFHAARYGVVPVRKTGGSS
>NZ_CP013079.1|WP_003820957.1|612845_614609_-|glutamine--tRNA-ligase/YqeY-domain-fusion-protein
MTHAPTPPAASNFLRPIIEDDLQANRFQGKLWAGKPGPAALQAQGQPDPARIRTRFPPEPNGYLHIGHAKSICVNFGLARDYGGVCHLRFDDTNPEKEEQEYVDAIIEAVHWLGFDWQADGNDNLYFASDYFEFMYEFAEALVQAGHAYVDEQSAEEIRASRGTLTEPGTDSPWRDRPADESLLRLREMRDGKHPDGSLVLRARIDMASPNINLRDPVMYRVRHATHHRTGNAWCIYPMYSWAHPVEDALEGITHSICTLEFEDQRPFYDWILARLAELGKLARPLPHQYEFARLNLTYVVTSKRKLLQLVREGYVDGWDDPRMPTLFGLRRRGYTPSSIRLFCDRTAVSKSDSRIDYSLLEQAVRDDLDPVAPRSVAVLDPLKLVITNYPEGRSETCSAPRNPHDPQAGVREFPFTRELWIEQDDFREEPPKKYFRLFPGNTVRLKYGYVVRCTGFTKDESGKVVEVQAEYLPDTKSGTPGADSVKVKGNITWVSAAHAVPAQVHLYDRLFADAHPDGGDKDFLACLNPNSKQTVQAWLEPGIEAVPGATWQFERLGYFTVDSKDSRPEAPVLNRIVTLRDSWQAA
>NZ_CP013079.1|WP_010931362.1|611855_612734_-|septum-site-determining-protein-MinC
MNTESLALDFKSATLYAIRVVLHDADTTRLRAALDKRMADAGSFFENEPVVIDATRVDAPVDWPALLQALADHNLPPIGVVAEGANLQGARDAGLVPVELSTSVARAPQVIDTAPPNDVATPVPSVPEATAEATAKAGPQDDEADGEQADEAPAHNPESVPTRAARETTEANRPTATPPQSSSALVITKPLRSGQRVYARHTDLIVIGMVSQGAEVIADGNVHVYGPLRGKAMAGARGDTSARIFTTQLDAELLAVAGVYRVVEDKLDRALHNQPALVRLDGDTLRIEALKG
>NZ_CP013079.1|WP_003814250.1|610927_611743_-|septum-site-determining-protein-MinD
MTRIVVVTSGKGGVGKTTTSASFSAGLAMRGHKTAVIDFDVGLRNLDLIMGCERRVVYDFVNVIQGEASLKQALIKDKQLENLFILPASQTRDKDALTQEGVEKVIDELKEMGFDYIVCDSPAGIEAGALMAAYFADDALVVTNPEVSSVRDSDRILGILAAKSRRAVQGDEPVKEYLLLTRYNPKRVNDGEMLSLSDIEDILRIKLIGVIPESEAVLQASNQGLPAIHLKDTDVSEAYKDVVARFLGEERSLRFTDYEKPGLLKRLFGGK
>NZ_CP013079.1|WP_003814739.1|625360_626146_-|enoyl-ACP-reductase-FabI
MGFLAGKRILMTGVLSNRSIAYGIARACRDQGADLAFTYVGDRFKERITEFAASFGSDIVLPCDVAEDSQIDAAFAELGKRWDGLDGLVHAIGFAPREAIAGDFLDGLSRENFRIAHDISAYSFPAMAKAALPLMEGRKGSVLTLSYLGSERVVANYNTMGLAKASLEASVRYLATALGPRGIRANAISAGPIKTLAASGIKDFSSILKFVEANAPLRRNVTIEDVGNVAAFMLSDLAAGITGEITHVDAGFSTVVPGMEN
>NZ_CP013079.1|WP_010931356.1|626240_627650_-|transglycosylase-SLT-domain-containing-protein
MRFLRLLLPLFLAVLAGCAGTAKQNQAAGPSSNRYIAQDTSRTVDLTSPPSDAWDRIRRGFAIPNLNTDLAQEWTDYYASHPESVQRMAERAGKYLYFIVDEINRRGLPTELALLPFVESAYNPTALSRSQASGLWQFIPTTGQHFNLKQDWWRDERRDPIASTYAALDYLEKLFEMQGDWYLALASYNWGEGSVQRAMAKNEAAGLSTDYLSLNMPDETRNYVPKLQAIKNIIANPRKFAVVLPPVENTPYFVAVQKNRDIDIELAARLAEMPLDEFKALNPAFNRPLIRGEHAPTLLLPADRADRFNANLQNYKGDLSSWKVYHTRRGESYAAIAKRFGISEAKLRASNDIGSKRKVAADQALLIPGVPSGDGAANIQLASLSPPVGALDNVGEPRAAAAPRGKAPARVASARPNVRTHKVSSGDTLFGLARKYGTSVGALRALNNLKGNNLKLGSQLRIPGTGTRG
>NZ_CP013079.1|WP_010927090.1|627660_628461_-|hydroxyacylglutathione-hydrolase
MQTAPPLSAVVPLPAFSDNYIWALAHEGQAAVVDPGDAAPVLRWLRATGATLRAILLTHHHPDHVGGVLELVQATGATVYGPAGETLPHCDVRLAEGDRVTLPELALALEVLDVPGHTAGHIAYTGRAAGVERVLFCGDTLFAGGCGRLFEGTPAQMLDSLEKLSALPADTQVCCAHEYTLANLRWALAVEPANRTLQQWYQRAQELRNEGTPTLPSTIGQERETNPFLRTPHAAVAHAAAVWSGRSLATPVEVFAALRQWKNNFK
>NZ_CP013079.1|WP_010931355.1|628481_629252_+|class-I-SAM-dependent-methyltransferase
MAEETPPIVELAEWFQTPPGQYVLAWEQAQFDEAVADIFGYYAWQVGLAEPNLLRANRMPFKAWVGAGVPPPELAQGWQACVAAAPEALPFESQSVDLLVLPHAFECAEAPHLVLREVERVLVPEGRVVISGFNPWSLWGARNLMPGMEAWLPLPLSAQVALPRLKDWFKLLSFEVERGRFGCYAPACRTDKWLRRWRFMERYGQRWWGLGGAVYVVTATKKVAAMRLIGPAWKTRRKRAQAASVVVNRQADDPGR
>NZ_CP013079.1|WP_010931354.1|629294_629762_+|ribonuclease-HI
MQNLEGSGDGQQVEMWTDGACKGNPGPGGWGVLMRAGQHEKTMHGGERQTTNNRMELMAVIEGLRALKRPCRVTIHTDSQYVMKGMTEWLANWKRRGWRTADKKPVKNVELWQALDEQVGRHQVQWRWVRGHAGDPGNERADALANQGMEAARGR
>NZ_CP013079.1|WP_005013747.1|629758_630709_-|IS481-like-element-IS481-family-transposase
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
>NZ_CP013079.1|WP_003818344.1|632657_633536_-|fatty-acid-desaturase
MVRPAEWLRHRRDWQSVLYLAALPALAAWQWVHGWHWALYAPMLFLTLGVGVIHHNHAHRRMWRPRWLNRLTDFWLTLLQGHPTFVFHAAHNANHHRYKHGPRDVARTYRFGGDTNHLAGYLLHPLQAVVVLYPLFLASLRRLRSRRPGVWRYCLRQYAAWLGLWGGLLALDPGKAFWLVIVPQLHGLHWLLATNYLQHAHADGGPGRHAALSYARNFEGWVNPLLFNIGLHTAHHENPRAHWSELRALHWQHYRDRVPSRLNERGLAPYMARVFVLGLFSRRCRTHTLMRP
>NZ_CP013079.1|WP_019247959.1|634462_637441_-|hypothetical-protein
MQLWLPDGTATSVRANAAGGFEASSAGDMTSGLIRARATDRYGDTSQEVTYAYTDTVDKTAPVLSIAGVATDEATGRVTVTGRSEPDAQVTIRFPGGGRKTVRADANGAYRVRSDGDLPAGVIVVQAADAAGNSTQAQQAYQDTVDRTAPEPVQIALDTDAATGRLTVSGQAEPGGSVTVTWPDGTTQTVRVDADGGFRVTSAGDAAQGDVVVVVADQAGNRAAPVRAHYADPVDRTAPMTPTVRHATDAQTGRVTVMGRTEAGALVTVQFPDGSSKTVRAQNDGGYAATSDTDMVSGPIVVSAGDADGNRTPAQQVMYTDTLDKTAPASPSLTVREDAASGRATVTGQAEPGAAVRVVFPNGEAQTVTAGSDGAYSVTSTADMVAGEITVVAADASGNQSAPARTVFADAVDKTAPAAPTLALSEAADSGRLTVSGRTEPGASVRVTFPDGETVTVTAKADGTYTATSRADMIGGNVTVVATDTAGNAAAPVRAAYADTVDRTPPVLDTPVLNVASDSGRVTVTGVTEPGARVQVAIPGESLQTVTADSAGRYRAVSPGDVLQSGTVRVIATDAHGNASAPRDVPYQDAVDRTAPPLTIEAAVEQARTGVVNVSGKTEPNLMVSATFPDGQTAQARADGQGRYQLASPADVARSGRIAVSASDAAGNRAAARAEFTDQVDKTAPAVTIRAVTEQAGTGVATVSGATEPGATVSVTFPDGQVARATADRSGAYTVHSARDVTARGNISVIATDAAGNASPSVSRQFSNTVADTVPPSLTIAMVTTDPGNGRITVSGVTEAGARVHVVFPGGASDTVTADSKGGYRATSAGDVGSGAVTAQATDASANRSPLKTYAYTDAWQPRQLSAKDFSQSRYFVPLTTRGGTDNEPLLRITTNQQIPTAELRVALKPYKTEDRAGRLVREAITLKWGNAPGVGGDARALHFYVPDSAKAKLRKELTEVERSNDYKFWIEFTDTRFGGVARLYIKVISTL
>NZ_CP013079.1|WP_010931070.1|637794_638745_+|IS481-like-element-IS481-family-transposase
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEGAGWDFVFVAIDDHARVAFTDIPPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
>NZ_CP013079.1|WP_010931353.1|638741_639830_-|NAD(P)H-binding-protein
MTGSTAGKVLVVGALGVVGRAALEHFGQRPGLARVGLSRHAPDFAPEASWVSADLRDAQATRAALAAHGDATHVVYAALNEQPDLLKGWRDSGNVDLNTGMLRNTLDALREAPLRHVTLLQGTKAYGVHTGRPMPVPARETDAVRDHANFYFDQQDLLAERAAAQGFGWTIFRPQIVLGVALGSAMNPVATLGAYAALSREAGQPLRYPGHPHLLTECTDARLIARAIAWAWDEPRAHGEAFNIANGDVVLWQPVFERLAALFGMPLGEPVDTRMREAMPQLAERWRAIAERERLAVPELRDLIGLSWQYADATWAARHPLPVPPLVSTIKLRQAGFGDCIDTQDCIVEHLREMQRLRYLPR

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Crispr_ID: NZ_CP013079_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013079_3

2909671-2909787

Orphan

Consensus_repeat	Method
TTTTTTGCCTTGGGGCGGCCCGGCGGCAAAAAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013079_3

>merge|NZ_CP013079|3|2909671-2909787|CRISPRCasFinder
TTTTTTGCCTTGGGGCGGCCCGGCGGCAAAAAAAGGCCCCCACGCTGCGCCCGCTGTGCGGGCTTGCTGCCCCCCAAGGGGGTTTTTTTGCCTTGGGGCGGCCCGGCGGCAAAAAAA

>NZ_CP013079|3|3|2909671-2909787|CRISPRCasFinder
TTTTTTGCCTTGGGGCGGCCCGGCGGCAAAAAAA	GGCCCCCACGCTGCGCCCGCTGTGCGGGCTTGCTGCCCCCCAAGGGGGT
TTTTTTGCCTTGGGGCGGCCCGGCGGCAAAAAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013079.1\|WP_010928340.1\|2913410_2914238_-\|TatD-family-hydrolase	unknown	unknown	gnl\|CDD\|238635
NZ_CP013079.1\|WP_010930202.1\|2891397_2891886_-\|Lrp/AsnC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224439
NZ_CP013079.1\|WP_003812422.1\|2914271_2914967_-\|lipoprotein-releasing-ABC-transporter-ATP-binding-protein-LolD	unknown	unknown	gnl\|CDD\|213222
NZ_CP013079.1\|WP_010930192.1\|2916249_2917227_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226706
NZ_CP013079.1\|WP_010926448.1\|2919011_2920116_+\|peptide-chain-release-factor-2	unknown	unknown	gnl\|CDD\|234799
NZ_CP013079.1\|WP_010930200.1\|2894862_2897145_+\|NADP-dependent-malic-enzyme	unknown	unknown	gnl\|CDD\|235976
NZ_CP013079.1\|WP_019248398.1\|2900572_2901541_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NZ_CP013079.1\|WP_010930198.1\|2898038_2898989_+\|IS481-like-element-IS481-family-transposase	unknown	unknown	gnl\|CDD\|366234
NZ_CP013079.1\|WP_010930194.1\|2909898_2913129_-\|autotransporter-SphB3	unknown	unknown	gnl\|CDD\|377133
NZ_CP013079.1\|WP_010930201.1\|2892011_2894708_+\|alpha-ketoglutarate-dehydrogenase	unknown	unknown	gnl\|CDD\|237267
NZ_CP013079.1\|WP_010930196.1\|2905236_2909163_-\|inverse-autotransporter-beta-barrel-domain-containing-protein	unknown	unknown	gnl\|CDD\|378762
NZ_CP013079.1\|WP_003812405.1\|2899035_2899590_-\|transcription-elongation-factor-GreB	unknown	unknown	gnl\|CDD\|179345
NZ_CP013079.1\|WP_010930190.1\|2920907_2922428_+\|lysine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234778
NZ_CP013079.1\|WP_019247537.1\|2914959_2916240_-\|lipoprotein-releasing-ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|274034
NZ_CP013079.1\|WP_010930191.1\|2917208_2918909_+\|single-stranded-DNA-specific-exonuclease-RecJ	unknown	unknown	gnl\|CDD\|182944
NZ_CP013079.1\|WP_023995083.1\|2901540_2902404_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|225212
NZ_CP013079.1\|WP_003816844.1\|2899657_2900503_-\|PHP-domain-containing-protein	unknown	unknown	gnl\|CDD\|223686
NZ_CP013079.1\|WP_010926447.1\|2920145_2920901_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|180796
NZ_CP013079.1\|WP_010930189.1\|2922470_2922773_+\|membrane-protein	unknown	unknown	unknown
NZ_CP013079.1\|WP_019248935.1\|2897316_2897940_+\|serotype-2-fimbrial-subunit	unknown	unknown	gnl\|CDD\|339870

Protein	Function_ID	Function_description	E-value
NZ_CP013079.1\|WP_010928340.1\|2913410_2914238_-\|TatD-family-hydrolase	gnl\|CDD\|238635	cd01310, TatD_DNAse, TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.	1.42767e-89
NZ_CP013079.1\|WP_010930202.1\|2891397_2891886_-\|Lrp/AsnC-family-transcriptional-regulator	gnl\|CDD\|224439	COG1522, Lrp, Transcriptional regulators [Transcription].	2.95114e-53
NZ_CP013079.1\|WP_003812422.1\|2914271_2914967_-\|lipoprotein-releasing-ABC-transporter-ATP-binding-protein-LolD	gnl\|CDD\|213222	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein. This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.	2.7791e-114
NZ_CP013079.1\|WP_010930192.1\|2916249_2917227_+\|hypothetical-protein	gnl\|CDD\|226706	COG4255, COG4255, Uncharacterized protein conserved in bacteria [Function unknown].	1.08896e-20
NZ_CP013079.1\|WP_010926448.1\|2919011_2920116_+\|peptide-chain-release-factor-2	gnl\|CDD\|234799	PRK00578, prfB, peptide chain release factor 2; Validated.	0
NZ_CP013079.1\|WP_010930200.1\|2894862_2897145_+\|NADP-dependent-malic-enzyme	gnl\|CDD\|235976	PRK07232, PRK07232, bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed.	0
NZ_CP013079.1\|WP_019248398.1\|2900572_2901541_-\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	2.0858e-13
NZ_CP013079.1\|WP_010930198.1\|2898038_2898989_+\|IS481-like-element-IS481-family-transposase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	7.71464e-23
NZ_CP013079.1\|WP_010930194.1\|2909898_2913129_-\|autotransporter-SphB3	gnl\|CDD\|377133	pfam03797, Autotransporter, Autotransporter beta-domain. Secretion of protein products occurs by a number of different pathways in bacteria. One of these pathways known as the type V pathway was first described for the IgA1 protease. The protein component that mediates secretion through the outer membrane is contained within the secreted protein itself, hence the proteins secreted in this way are called autotransporters. This family corresponds to the presumed integral membrane beta-barrel domain that transports the protein. This domain is found at the C-terminus of the proteins it occurs in. The N-terminus contains the variable passenger domain that is translocated across the membrane. Once the passenger domain is exported it is cleaved auto-catalytically in some proteins, in others a different protease is used and in some cases no cleavage occurs.	3.21051e-45
NZ_CP013079.1\|WP_010930201.1\|2892011_2894708_+\|alpha-ketoglutarate-dehydrogenase	gnl\|CDD\|237267	PRK13012, PRK13012, 2-oxoacid dehydrogenase subunit E1; Provisional.	0
NZ_CP013079.1\|WP_010930196.1\|2905236_2909163_-\|inverse-autotransporter-beta-barrel-domain-containing-protein	gnl\|CDD\|378762	pfam11924, IAT_beta, Inverse autotransporter, beta-domain. This is a family of beta-barrel porin-like outer membrane proteins from enteropathogenic Gram-negative bacteria. Intimins and invasins are virulence factors produced by pathogenic Gram-negative bacteria. They carry C-terminal extracellular passenger domains that are involved in adhesion to host cells and N-terminal beta domains that are embedded in the outer membrane. This family represents the beta-barrel porin-like domain in the outer membrane that can be found in intimins, invasins and some inverse autotransporters.	8.97198e-85
NZ_CP013079.1\|WP_003812405.1\|2899035_2899590_-\|transcription-elongation-factor-GreB	gnl\|CDD\|179345	PRK01885, greB, transcription elongation factor GreB; Reviewed.	4.04513e-99
NZ_CP013079.1\|WP_010930190.1\|2920907_2922428_+\|lysine--tRNA-ligase	gnl\|CDD\|234778	PRK00484, lysS, lysyl-tRNA synthetase; Reviewed.	0
NZ_CP013079.1\|WP_019247537.1\|2914959_2916240_-\|lipoprotein-releasing-ABC-transporter-permease-subunit	gnl\|CDD\|274034	TIGR02212, releasing_system_transmembrane_protein_lolC., lipoprotein releasing system, transmembrane protein, LolC/E family. This model describes the LolC protein, and its paralog LolE found in some species. These proteins are homologous to permease proteins of ABC transporters. In some species, two paralogs occur, designated LolC and LolE. In others, a single form is found and tends to be designated LolC. [Protein fate, Protein and peptide secretion and trafficking].	6.22467e-159
NZ_CP013079.1\|WP_010930191.1\|2917208_2918909_+\|single-stranded-DNA-specific-exonuclease-RecJ	gnl\|CDD\|182944	PRK11070, PRK11070, single-stranded-DNA-specific exonuclease RecJ.	0
NZ_CP013079.1\|WP_023995083.1\|2901540_2902404_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|225212	COG2333, ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only].	1.92718e-60
NZ_CP013079.1\|WP_003816844.1\|2899657_2900503_-\|PHP-domain-containing-protein	gnl\|CDD\|223686	COG0613, COG0613, Predicted metal-dependent phosphoesterases (PHP family) [General function prediction only].	1.79612e-72
NZ_CP013079.1\|WP_010926447.1\|2920145_2920901_+\|SDR-family-oxidoreductase	gnl\|CDD\|180796	PRK07023, PRK07023, SDR family oxidoreductase.	5.47641e-103
NZ_CP013079.1\|WP_019248935.1\|2897316_2897940_+\|serotype-2-fimbrial-subunit	gnl\|CDD\|339870	pfam16970, FimA, Type-1 fimbrial protein, A. FimA is a family of Gram-negative fimbrial component A proteins that form part of the pili. There are usually up to 1000 copies of this subunit in one pilus that form a helically wound rod onto which the tip fibrillum (FimF.FimG, FimH) is attached. Pilus subunits are translocated from the cytoplasm to the periplasm via the general secretory pathway SecYEG.	7.5249e-22

>NZ_CP013079.1|WP_010930196.1|2905236_2909163_-|inverse-autotransporter-beta-barrel-domain-containing-protein
MNKNIYRVVWSLVRGAWVVAGEWARAGRKSSSPRRQNRQRARRGVAAMVGGSILAQALLPLSALAQGAPTLRPARVAQEEAGQDAAWTRKLAAQAESLARRQAERQPGARVDGDYLKREAQAQVNDVLRDGVNLARESGLPFLRNLQGGLSHDFESGRTSLQLNTIDEVYRAGRNTGLLQLGAHNQNDRPTANAGAVYRREVNDALMVGANGFLDYEFGKQHLRGSVGLEVIAPEFSLYGNVYAPLSDWKGAKRNNRREEKPASGMDVGVGYRPAFAPGLSLSATHFRWNGAEVDYFDNGRTQAGAKGFKVGVEYRPVSLVSVGLEQTKVIGGGRETRMQLGLNINLSEPLSKQLRRDASGTPAFSPDARRHALVERENRIVLNTRRKEIILPLVVSKVSTLQADGRVTVIGATQPFATVTVRMPDGMTGTATADASGRFAYTSAGDQPSGVLALRARNAEGDSSREVTYRYVDEVVLGDLQVAVMALVPLPADRALEVRGKTEPKVDVKVSFSNGESVLAKADAKGLFTVRSTRKVTQGKVLVQATHPQTRKEARAVADYLPPATLAPTIDAVTAQADTGRVTVTGQAEPGAQVDVHFPDGTAKTVDAGADGAYAATSDGDMVSGDIHAQATDKAGNQSPEATRHYGDTTDITPPAAPTIANVATDATSGRVTAAGMAEPGANVTVNFPDGTRKTVVAGGDGAYTATSDRDMVSGDIRVQATDKAGNQSPEATRAYADAVDRTAPEVPTVTHVATDAKSGRITVTGMAEPGANVTVNFPDGTRKTAVAGGDGAYTATSDGDMVSGDIRVQATDKAGNRSPEATRAYADTVDTTPPAVPTITDVTTDATNGRITVTGVAEPGANVTVDFPDGTRKTVVAGGDGAYTATSDRDMASGDVRVQAIDKGGNRSPEATRAYADTVDKTAPAAPTITNVTTDAASGRITVTGMAEPGANVAVNFPDGTRKTVVADGAGAYAADSDGDMVAGDIHVQATDKAGNRSPEGTRAYVDTVDKTPSAAPTIVRVTTDRSSGVVTVAGTADPDNDVTVQFPDGGRKTVKAGKDGSYSVTSDNDIFSGIIQVSARNPAGNASPEVRQDYRDEFVPANAITNIETNSRNGIVTVSGKTSPDATVVVSFPGGDEARTRAKGDGTFSVSSPMDIPRGVVSLSTEVNGVQTVVATRTYEDKFTKGGLDFTAFLPYTPKFNGVSTSDTSAVLLSIPRYFYSGGAPVAKIMPPEADGSEFAKRAAAAMRAQVTPGRDSSEYDVRVSWPAGTFTPADVGQRADLAVKVFDKGTGKYMLLLAPVNFPY
>NZ_CP013079.1|WP_023995083.1|2901540_2902404_-|MBL-fold-metallo-hydrolase
MTVHSYWTLTALDVGQGGAVVLETARHVLLFDTGPRHGDASDAGERVIAPFLWARGYRHIDTLVVSHADLDHTGGLRSVLAALPVGQAYASFDLAAWLARQARVRPDGWRAAPRMPPATRGCEAGVQWRVDGVRLRFVYPPSLAAPLPWRSSNARSCVLLVEGVGHRALLTGDVGLVQEAAFAAALPPVDLVMAPHHGSAMSSGSLLTAATRPAHAIAQAGYLNRFGHPAASAINRWRRAGAAVWRTDLDGAVRADSTPRGLFASGQRQVARRYWRDSRAGPDAPLR
>NZ_CP013079.1|WP_019248398.1|2900572_2901541_-|alpha/beta-hydrolase
MGHRRPSGPRRGDIMQEPRLDFVTCASPTGFHRMAYWEWGDPLNDRVLVCVHGLTRTGRDFDHLARRLAGQWRVVCPDVAGRGKSDWLSNPALYAVPQYVSDMATLIARVWPATLAWVGTSMGGLIGLGLAGAATMMRLARAMRPRPDGLPAQADDLRLHRLVLNDVGPRLNVEVLQRIAGNVAAQDSYSTFEAAVAAMRQISTTFGPHTDAQWDELARHIYVRQGGGWVRHFDPALAVPLGAQVAQAFEAGERILWQAYDSLDCPVLIVRGQDSDLLSAATAGEMLARNPRARLHEVPGVGHAPTLMTPEQIEPIARFLQE
>NZ_CP013079.1|WP_003816844.1|2899657_2900503_-|PHP-domain-containing-protein
MNIAAPNVDLHCHSTVSDGSMPPAAVARRAHANGVDVWALTDHDEIGGVAEAAQAAAALGMRFVAGVEISVTWAGLTVHIVGLRVDPANEALVQGLRDTRAGRAARAVQIGERLAGLGMPGAYEGALPFAGNPELISRTHFARFLVEAGYCPDVQTVFNKYLGDDCPGHVPMQWASLAEAVGWIRGAGGCAVIAHPGRYKYSPMQFDALYDEFLQLGGTGIEVVTGSHTSEEARRYAEVARRHGFLASRGSDFHSPTESRVDLGRLPPLPPDLKPVWHDWF
>NZ_CP013079.1|WP_003812405.1|2899035_2899590_-|transcription-elongation-factor-GreB
MNKAFVKESDRDDEDDLPEAQALPAGTRNYMTPQGYARLRDELSHLMNVERPSVVQVVSWAASNGDRSENGDYLYGKKRLREIDRRMRFLTKRLDIAEVVDPAAQPNRDQVFFGATVLYMDRAGEERTVTIVGVDEAEPLAGKISWISPVARALTKAHEGDTVTLRTPGGVEELEILEVRYPDA
>NZ_CP013079.1|WP_010930198.1|2898038_2898989_+|IS481-like-element-IS481-family-transposase
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLAGLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>NZ_CP013079.1|WP_019248935.1|2897316_2897940_+|serotype-2-fimbrial-subunit
MQIPFQRALRLCLRAALAAIASAAHADDGTIVITGTITDTTCVIEDPSGPNHTKVVQLPKISKNALKANGDQAGRTPFIIKLKDCPSSLGNGVKAYFEPGPTTDYSTGDLRAYKMVYATNPQTQLSNITAATEAQGVQVRISNLNDSKITMGANEATQQAAGFDPEVQTGGTSRTVTMRYLASYVKKNGDVEASAITTYVGFSVVYP
>NZ_CP013079.1|WP_010930200.1|2894862_2897145_+|NADP-dependent-malic-enzyme
MDENLTKLALDYHAYPTPGKISVTPTKTLANQDDLSLAYSPGVAAACMAIFDQGNDAASKYTSRSNLVGVITNGTAVLGLGNIGSLAAKPVMEGKGCLFKKFAGIDVFDIELAENDPDKLVDIIAALEPTLGGVNLEDIKAPECFYIEKKLRERMNIPVFHDDQHGTAIISSAAILNGLKVVGKDIGQVKLACSGAGAAAIACLDLLVHLGIKREHIYVVDSRGVIWEGRDENMEPNKRRYAQKTEARTLADVVNGADVFLGCSTAGVLTPEMVKTMAAQPLILALANPEPEIRPELAKAARPDCIVATGRSDYPNQVNNVLCFPFIFRGALDAGATRITEEMKLACVKAIAELAQAEQNDEVARAYAGQELSFGPDYIIPKPFDPRLIVQIAPAVAQAAADSGVATRPIEDIEAYRQKLMGFVYHSGQLMRPLFQQAKQAPKRVVYADGEDERVLRAVQTVIDEKLAEPILVGRPSVIEMRIKKFGLRMVPGQNVEIVDPEDDSRFNDTWNGYYQLRGREGVTPAIAKAMIRKHNTLIGAMLLRRGDADALLCGVASKYDNQLKYVEEVIGRKPGQTYGALNVLMLPNQTLFVTDTHVNENPSADEIANITIQAAEEMLRFGVMPKIALLSHSNFGSRPTDSSRKMAHARKLVAERAPHLEVDGEMHADAALSESIRLQAYPDSTLKGRANLLVMPNLDTGNITYNMLKMTGSNGIAMGPILLGSARPVHILTTSATVRRIVNMTALAVVDAQQEAAEG
>NZ_CP013079.1|WP_010930201.1|2892011_2894708_+|alpha-ketoglutarate-dehydrogenase
MCNAQAGATPPQIPDPDPVETAEWCEALDSLTQAGGPERAAYVLQQLLARATALGVRAPGITRTAYLNTIAADQEPPFPGNLSLEERIASINRWNALAMVVRANQAHGELGGHIASYASAADLFEVGFNHFFRAPAPGFGGDLVYMQPHSAPGIYARAYLEGFLNDVDLAHFRQEITAGAQGLRGLSSYPHPWLMPDFWQFPTGSMGIGPINAIYQARFMRYLEHRSLAMPSDRKVWGIFGDGEMDEPESIAALTLAARERLDNLVFVINCNLQRLDGPVRGNGRIIDELETLYAGAGWNVIKLVWGGDWDALLRRDPDGVLAGTFSHTVDGQFQTFAANDGAYNRQHFFGQDPRLSALVADWSDEAIDRLRRGGHDMVKIHAAYHRATHHRGQPTVILAQTKKGFGMGTAGQGKMTTHQQKKLDDEALLAFRDRFALPISDADCLALKFYKPAEDSAELRYLESRRAALGGYLPRRRTEAPRLAPPPVADWARFALQAAGKEMSSTMAIVRMLTALLKDPQLGPRIVPIVADEARTFGMANLFRQVGIYSAQGQLYEPEDIGSVLAYREARDGQILEEGITEAGAISSWTAAGTSYSVNGLPMLPFYIYYSMFGFQRIGDLIWAAADQRTRGFLIGATSGRTTLGGEGLQHQDGYSHLAAAAVPNCRAYDPAYAYEVAVLVEHGMQRMLDEQCDEFYYLTVTNENLAQPDMPEGEETRTGILRGMHRVRAADATPQVRLLGAGPMLDEAMRAAQLLRDEHGLDAEVWSVTSFSELARGGRGAERAQALGLPCPDGNWLAQCLGDQATPVVAVSDYVRAVPEQIRAWVPGPYRVLGTDGFGHSDTRARLRDFFEVGAPWIVLHALDLLAREDSAWQPALQARREQLQAATRNVPSWQS
>NZ_CP013079.1|WP_010930202.1|2891397_2891886_-|Lrp/AsnC-family-transcriptional-regulator
MPPHALDAIDRRILDLLQTDASLTNVELARRVHLSPSPCLARVKALEAAGIIRGYVALADPAQLGLNLNVFIQVSLEKQVESELERFQGAMADCPEVMECYLMTGDADYLLRVVVADMPGLERFIVNRLSRIPGVKNIRSGFALKQVKYQTALPLRQGSGPQ
>NZ_CP013079.1|WP_010930194.1|2909898_2913129_-|autotransporter-SphB3
MAQASARGMGLRITSLAAALLGVYGAAGAAENRLECIGACPPGQPVAGAHYSGTNLSANREWVVYGEGSNAVFTLQGGSVTASGGLMGAVNAADGARVYLNQVSVRTDAGNGWEAPGVRAEYGALVNVRGGSIATVGGGSYGVQSLDSGTMIELNGTDIRTTDAYSDGLRAEFGGSIRAVGLTINTTGEHAVGAMGADDGTIALRDSRITTSGVDAYGLGTESQVLSPGGVLQVSNTAIQTSGKNAHGVYLQGGSSLNMSGGSIRTTGSGAAGLRVSNGSSVALNGVEVVASGPSLLSTLSATRQQSIVVGAGSNLTRNDGRLLLVRRVAGGELGQVTLTLKSGSYAAGNIENLAADGSRESSALTIVDVQSGAQWAGLVIDDTTAIVNGSQSGQHSGFSTAGDMVLEGGSAPVTFTGVSNIGGSSSLGAGSQTTFGGATTIGQSLAVLPGGSVAFNGPLTIGESVTEGQGTALSFNAPAIIGANVQGAGGAAFTFSGPAQVGGSVQGLDGASFRFSTSAPTAIAGGLSLAGGSSLGGGSPTTPIVVIGGADAVSGAILGGNLDIGGALRMTGASLAPGNSIGTVTVGSVGALSGSTYLAEVNAKGQSDLLVVRSGNVDLAGVSLVVGQENGTGGYVLNHDYTIIKTEAGKIVGEFAAASLDESLASTLVKLDPVKYGAQATQVSLSPDADKLAAARAGLIRNQSAVLDGALSVAGRNASADAVMLMSDTGQRADALDQLSGEVHGSAVSALYSNTQLLNRTVARRMSANLGAGLLAGAPTAQAAGPAAASAMPGTAAYPLWADVVDNWSSFDAKDNAAKAKSNTAGLFIGGDAAVGAGWRVGGALGFTDGRIKADAVDSRSDVTSYTAALYGGNSWAAGKGKLNFLAGVGYTHHDIDSRRSVDVGGAQTLKADYKANTTQLFAELGYQVPVGASSSVEPYAGLAWFNNHSDSFDEDGGPAALHGSGQTDQITTFTLGLRGNTALQLGATETRLSAGLGWRHANGDVDATRKLAFIQGGGTAFTVAGSPVAREAAVLDLAAEVDVGRNAALGLAYGGQFGNGNKENTGSLYLKVRF
>NZ_CP013079.1|WP_010928340.1|2913410_2914238_-|TatD-family-hydrolase
MLIDTHCHLDAAEFDADRMAVARAAREAGVQAIVIPAVERANFATVRQLAHAVDSGAYALGIHPLYVARARDEDLDSLRRAIESALPDPRFVAIGEIGLDFFVAEIASGAPRERQERFYAAQLDLAAEYGLPVLLHVRRSQDILLKHLRRRPGVPGGIAHAFNGSAQQAGAFVEQGFALGLGGAMTYPRALQIRRHAADIGLDHLVLETDAPDIPPAWLYEPERRNTPGQLPRIAAELAALRGQAVADVARATTTTALRVLPRLGALLQDRAATP
>NZ_CP013079.1|WP_003812422.1|2914271_2914967_-|lipoprotein-releasing-ABC-transporter-ATP-binding-protein-LolD
MTEPNDTGPALQAEHLGKVYDEGPARIEVLSDVSLSVARGEMVAIVGASGSGKSTLLHILGLLDVPSSGTVSVDGVPAAGLSEKRKSALRNRSLGFVYQFHHLLPEFSALDNVAMPLIVRRENRDRARAQAREVLELVGLAAREEHFPGQLSGGERQRVALARALVTRPACVLADEPTGNLDRHTAHNMFELLTRVNRESGTAFVIVTHDPELAARADRQLHMENGRLQPD
>NZ_CP013079.1|WP_019247537.1|2914959_2916240_-|lipoprotein-releasing-ABC-transporter-permease-subunit
MLKIPYELWIGARYAGMARIRQRRGCRDRFISFIAATSMAGIALGVAALIVVLSVMNGFQKEVRDRMLSVLPHIELYIPGAAPERVLQQWRQFAQAARANPEVKGEAPFVAAQGMLVRGQALRGVQVRGIDPATEGNVSDIPRQMVSGKLSDLVAGGFGAVLGSDLADGLGVKTGDTVLMLAPQGSISPAGFAPRMRQFTVVGIFSSGHYEYDSTLVFIDDEDAAKVFRESGTAGVRLRVADMQRAPEVAAELTKVLPPYVMAADWSRNNRTWFAAVQTEKRMMFLILALIVAVAAFNLLSSLVMAVKDKQSDIAILRTLGAGPGEVARIFLVQGALIGVVGTLLGVAGGIAIAYNVDVIVPFIERLLGVQFLPREVYFISALPSDPQADDIITIGLTSLVLSLLATLYPSWRASRLQPAQVLRHD
>NZ_CP013079.1|WP_010930192.1|2916249_2917227_+|hypothetical-protein
MALTGTRTTIAAMLIVIPGALPAAAVAPELARLLPQHAPTLHGWLQAASARVQAFDAARQGCTPFEGWQLEQAGYQPQPGLPLGAGLGPLRAAGGTPGQPVWLADLAHLMLGADQAALLDPALLDLRADESAQLFEAAAPLFADSGFGATPIDAARWRLTLPAGMAPQTASPAAVAGQRLRAWWTQDVAMRPWRRLLNEIQMVWYEHPVNEARAARGAAPINALWLYGGATPWPAGAPAPARVCDELAATQRAGDWAAWLDALAMLDAAQLAPLAGPHGRPVQPLQLLLLGDDRRAALTLKPRAGLARWLPAPKHNWNAWWSRPV
>NZ_CP013079.1|WP_010930191.1|2917208_2918909_+|single-stranded-DNA-specific-exonuclease-RecJ
MVSPRLIIRTADLQACQHLEAAGIHPLLSRLWAARGVIHPEQTRMAWPALLPPDRLTHSAHAAAVLADAIEQGKRLLIVADYDCDGATACAVGLRALSAMGADVDFLVPNRFETGYGLSPAVVELACRHRRGKPDIIITVDNGIASVDGVAAANAAGIGVVITDHHLPGDTLPEALAIVNPNQPGCGFGSKHLAGVGVIFYMMLALRAELRRRGVYAPDGGPRLDALSDLVALGTVADVVKLDANNRLLVTQGLQRMRAGRMQPGVRALFAVAGREPRTASGFDLGFALGPRINAAGRLADMSLGIACLTTDDEAQTLEMARELDNINRERRTIEAEMRDQALAAMEAPDAAAGATVCVFDPGWHQGVVGLVASRLKEKFWRPTLAFAPAGEDELRGSGRSIPDVHLRDALDLVSKRHPGLIRKFGGHAMAAGLTLGSGDFAAFAPAFDAAVRELTGRDRFEPLLETDGSLESGYANAEVAGLLQQQVWGAGFAAPLFLDEFTVRSQRLVGGKHLKLALERGHQRFDAIWFGHDQSLPERIQAAYRLEQNIWNGMVSVQLVIEHAA
>NZ_CP013079.1|WP_010926448.1|2919011_2920116_+|peptide-chain-release-factor-2
MEAERQNQLVARLEDYAEREQALRRYLDYDAKSERLQVVNAELEDPAIWNDPKHAQDLGREKKSLEDVVETLTELGSGLADSCELVELALADSDDATLEAIEHDADRFQEKLETLEFRRMFANPADPLNCFVDIQAGAGGTEAQDWASMLLRQYLKYAERKGFKAEILEESEGDVAGLKSATIKIEGEYAFGYLRTETGVHRLVRKSPFDSSGGRHTSFASVFVYPEVDESFEVEVNPADLRIDTYRASGAGGQHINKTDSAVRITHAPSGIVVQCQNDRSQHRNRAEAMQMLKSKLYELEMRNRMTEQQKLEDSKTDVGWGHQIRSYVLDQSRIKDLRTNVEISNTQKVLDGDLDPFIQASLKQGV
>NZ_CP013079.1|WP_010926447.1|2920145_2920901_+|SDR-family-oxidoreductase
MTDTVAILTGASRGLGAALARGLLAPGTRLITLARRADPDLEAAARTRGASLEQVQVDLSDPAAAGAAAKRLCAALPRDARRYLLINNAGTVSPVAQAAGLTDGAAIAGALNLNVTAVVLLTARFVAALQGLPADRRVLNISSGAGRNPNAGWGVYCAAKAALDMYSRVLKQEQGQDGVRVVALAPGIVDTDMQGAIRASDPADFPALERFREFHATGKLSAPADVAARILAYLDRDDFGTTEIDDIRNYQ
>NZ_CP013079.1|WP_010930190.1|2920907_2922428_+|lysine--tRNA-ligase
MTDQSPAPTAQDENRLIAERRAKLARLRETGVAFPNNFVPDAHAADLHARYDGLDQEALTAAAVTVKVAGRMMLKRVMGKASFATLQDGSGRIQIYLERGTLGEEAYAAFKQWDIGDIIAIEGPVFKTNKGELSVHANSARLLSKSLRPLPDKFHGVADQELRYRQRYVDLIMTDATRRTFEARSKAVGGIRQAMLNAGFLEVETPMLHPIPGGAAAKPFVTHHNALDMQMFLRIAPELYLKRLIVGGFERVFEINRNFRNEGVSPRHNPEFTMMEFYAAYADYRWLMDFTEDLIRQAAIAATGSAVLSYQDRELDLSQPFDRLTICEAILKYAEGYTQAQLDDPAFVRAELRKLGANVEGPPLARAGLGALQLALFEETAEAKLWRPTYIIDYPVEVSPLARASDTRDGITERFELFITGREIANGFSELNDPEDQAERFRAQVEAKDAGDEEAMYFDADYIRALEYGMPPTGGCGIGIDRLVMLLTDSPSIRDVILFPHLRRED
>NZ_CP013079.1|WP_010930189.1|2922470_2922773_+|membrane-protein
MAALAYLLLSRRARPAAAPRPLRALPAGRRRMPLYLGVAAVLALAGALLSAFLLVTAMAGGSGGGYRGQADFLQQVAIVLLAIGVVCAIAALVSFFRQRG

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Crispr_ID: NZ_CP013079_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013079_4

3623393-3623486

Orphan

Consensus_repeat	Method
GTGCCTGTCCCGGCGGGGACAGGCAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013079_4

>merge|NZ_CP013079|4|3623393-3623486|CRISPRCasFinder
GTGCCTGTCCCGGCGGGGACAGGCACGCCCGCACAGCGGGCGCAGCGTGGGGGTTTTCCTGGGCCCGGGTGCCTGTCCCGGCGGGGACAGGCAC

>NZ_CP013079|4|4|3623393-3623486|CRISPRCasFinder
GTGCCTGTCCCGGCGGGGACAGGCAC	GCCCGCACAGCGGGCGCAGCGTGGGGGTTTTCCTGGGCCCGG
GTGCCTGTCCCGGCGGGGACAGGCAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013079.1\|WP_010929791.1\|3615523_3616309_-\|crotonase/enoyl-CoA-hydratase-family-protein	unknown	unknown	gnl\|CDD\|181723
NZ_CP013079.1\|WP_010929930.1\|3628492_3629464_-\|tripartite-tricarboxylate-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270296
NZ_CP013079.1\|WP_019247419.1\|3612199_3613372_-\|acyl-CoA-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|173841
NZ_CP013079.1\|WP_003814685.1\|3614485_3615457_-\|tripartite-tricarboxylate-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270234
NZ_CP013079.1\|WP_003814691.1\|3616301_3617534_-\|CoA-transferase	unknown	unknown	gnl\|CDD\|367110
NZ_CP013079.1\|WP_003815550.1\|3630672_3631065_-\|MaoC-family-dehydratase	unknown	unknown	gnl\|CDD\|239525
NZ_CP013079.1\|WP_010929928.1\|3631061_3631457_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013079.1\|WP_003814694.1\|3617729_3618485_-\|TerC-family-protein	unknown	unknown	gnl\|CDD\|223930
NZ_CP013079.1\|WP_019247421.1\|3623716_3624115_+\|GTP-binding-protein	unknown	unknown	gnl\|CDD\|234569
NZ_CP013079.1\|WP_010929788.1\|3620902_3622303_+\|PLP-dependent-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|224089
NZ_CP013079.1\|WP_010929933.1\|3625295_3626243_-\|dihydrodipicolinate-synthase-family-protein	unknown	unknown	gnl\|CDD\|188630
NZ_CP013079.1\|WP_003815546.1\|3631453_3631855_-\|Zn-ribbon-domain-containing-OB-fold-protein	unknown	unknown	gnl\|CDD\|224462
NZ_CP013079.1\|WP_010929932.1\|3626449_3627340_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176107
NZ_CP013079.1\|WP_003814681.1\|3613497_3614475_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176106
NZ_CP013079.1\|WP_010929789.1\|3618595_3619114_+\|MgtC/SapB-family-protein	unknown	unknown	gnl\|CDD\|224204
NZ_CP013079.1\|WP_003814701.1\|3622835_3623306_+\|universal-stress-protein	unknown	unknown	gnl\|CDD\|366180
NZ_CP013079.1\|WP_010929931.1\|3627336_3628485_-\|CoA-transferase	unknown	unknown	gnl\|CDD\|367110
NZ_CP013079.1\|WP_003820700.1\|3622402_3622747_+\|TIGR01244-family-phosphatase	unknown	unknown	gnl\|CDD\|225984
NZ_CP013079.1\|WP_010929929.1\|3629501_3630662_-\|acyl-CoA-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|173849
NZ_CP013079.1\|WP_010929577.1\|3624246_3625197_-\|IS481-like-element-IS481-family-transposase	unknown	unknown	gnl\|CDD\|366234

Protein	Function_ID	Function_description	E-value
NZ_CP013079.1\|WP_010929791.1\|3615523_3616309_-\|crotonase/enoyl-CoA-hydratase-family-protein	gnl\|CDD\|181723	PRK09245, PRK09245, crotonase/enoyl-CoA hydratase family protein.	5.15941e-155
NZ_CP013079.1\|WP_010929930.1\|3628492_3629464_-\|tripartite-tricarboxylate-transporter-substrate-binding-protein	gnl\|CDD\|270296	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family; contains the type 2 periplasmic binding fold. Bug27 binds non-carboxylated solute nicotinamide, in contrast to BugD (aspartic acid transporter) and BugE (glutamate transporter) which both bind aliphatic carboxylated ligands. The Bug (Bordetella uptake gene) protein family is a large family of periplasmic solute-binding (PBP) receptors present in a number of bacterial species, but mainly in proteobacteria. Bug proteins are the PBP components of the tripartite carboxylate transporters (TTT). Their expansive expansion in proteobacteria indicates a large functional diversity.	5.90573e-128
NZ_CP013079.1\|WP_019247419.1\|3612199_3613372_-\|acyl-CoA-dehydrogenase-family-protein	gnl\|CDD\|173841	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26. Putative acyl-CoA dehydrogenases (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.	4.27565e-82
NZ_CP013079.1\|WP_003814685.1\|3614485_3615457_-\|tripartite-tricarboxylate-transporter-substrate-binding-protein	gnl\|CDD\|270234	cd07012, PBP2_Bug_TTT, Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold. The Bug (Bordetella uptake gene) protein family is a large family of periplasmic solute-binding (PBP) proteins present in a number of bacterial species, but mainly in proteobacteria. In eubacteria, at least three families of periplasmic binding-protein dependent transporters are known: the ATP-binding cassette (ABC) transporters, the tripartite ATP-independent periplasmic transporters, and the tripartite tricarboxylate transporters (TTT). Bug proteins are the PBP components of the TTT. Their expansive expansion in proteobacteria indicates a large functional diversity. The best studied examples are Bordetella pertussis BugD, which is an aspartic acid transporter, and BugE, which is glutamate transporter.	2.06741e-117
NZ_CP013079.1\|WP_003814691.1\|3616301_3617534_-\|CoA-transferase	gnl\|CDD\|367110	pfam02515, CoA_transf_3, CoA-transferase family III. CoA-transferases are found in organisms from all lines of descent. Most of these enzymes belong to two well-known enzyme families, but recent work on unusual biochemical pathways of anaerobic bacteria has revealed the existence of a third family of CoA-transferases. The members of this enzyme family differ in sequence and reaction mechanism from CoA-transferases of the other families. Currently known enzymes of the new family are a formyl-CoA: oxalate CoA-transferase, a succinyl-CoA: (R)-benzylsuccinate CoA-transferase, an (E)-cinnamoyl-CoA: (R)-phenyllactate CoA-transferase, and a butyrobetainyl-CoA: (R)-carnitine CoA-transferase. In addition, a large number of proteins of unknown or differently annotated function from Bacteria, Archaea and Eukarya apparently belong to this enzyme family. Properties and reaction mechanisms of the CoA-transferases of family III are described and compared to those of the previously known CoA-transferases.	8.36236e-118
NZ_CP013079.1\|WP_003815550.1\|3630672_3631065_-\|MaoC-family-dehydratase	gnl\|CDD\|239525	cd03441, R_hydratase_like, (R)-hydratase [(R)-specific enoyl-CoA hydratase]. Catalyzes the hydration of trans-2-enoyl CoA to (R)-3-hydroxyacyl-CoA as part of the PHA (polyhydroxyalkanoate) biosynthetic pathway. The structure of the monomer includes a five-strand antiparallel beta-sheet wrapped around a central alpha helix, referred to as a hot dog fold. The active site lies within a substrate-binding tunnel formed by the homodimer. Other enzymes with this fold include MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and the fatty acid synthase beta subunit.	3.21769e-21
NZ_CP013079.1\|WP_003815546.1\|3631453_3631855_-\|Zn-ribbon-domain-containing-OB-fold-protein	gnl\|CDD\|224462	COG1545, COG1545, Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only].	5.62422e-24
NZ_CP013079.1\|WP_003814694.1\|3617729_3618485_-\|TerC-family-protein	gnl\|CDD\|223930	COG0861, TerC, Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism].	1.14565e-78
NZ_CP013079.1\|WP_019247421.1\|3623716_3624115_+\|GTP-binding-protein	gnl\|CDD\|234569	PRK00007, PRK00007, elongation factor G; Reviewed.	1.37761e-90
NZ_CP013079.1\|WP_010929788.1\|3620902_3622303_+\|PLP-dependent-aminotransferase-family-protein	gnl\|CDD\|224089	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism].	3.43796e-109
NZ_CP013079.1\|WP_010929933.1\|3625295_3626243_-\|dihydrodipicolinate-synthase-family-protein	gnl\|CDD\|188630	cd00408, DHDPS-like, Dihydrodipicolinate synthase family. Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stabilizes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.	1.66209e-66
NZ_CP013079.1\|WP_010929932.1\|3626449_3627340_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176107	cd08415, PBP2_LysR_opines_like, The C-terminal substrate-domain of LysR-type transcriptional regulators involved in the catabolism of opines and that of related regulators, contains the type 2 periplasmic binding fold. This CD includes the C-terminal substrate-domain of LysR-type transcriptional regulators, OccR and NocR, involved in the catabolism of opines and that of LysR for lysine biosynthesis which clustered together in phylogenetic trees. Opines, such as octopine and nopaline, are low molecular weight compounds found in plant crown gall tumors that are produced by the parasitic bacterium Agrobacterium. There are at least 30 different opines identified so far. Opines are utilized by tumor-colonizing bacteria as a source of carbon, nitrogen, and energy. NocR and OccR belong to the family of LysR-type transcriptional regulators that positively regulates the catabolism of nopaline and octopine, respectively. Both nopaline and octopalin are arginine derivatives. In Agrobacterium tumefaciens, NocR regulates expression of the divergently transcribed nocB and nocR genes of the nopaline catabolism (noc) region. OccR protein activates the occQ operon of the Ti plasmid in response to octopine. This operon encodes proteins required for the uptake and catabolism of octopine. The occ operon also encodes the TraR protein, which is a quorum-sensing transcriptional regulator of the Ti plasmid tra regulon. LysR is the transcriptional activator of lysA gene encoding diaminopimelate decarboxylase, an enzyme that catalyses the decarboxylation of diaminopimelate to produce lysine. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.25236e-65
NZ_CP013079.1\|WP_003814681.1\|3613497_3614475_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176106	cd08414, PBP2_LTTR_aromatics_like, The C-terminal substrate binding domain of LysR-type transcriptional regulators involved in the catabolism of aromatic compounds and that of other related regulators, contains type 2 periplasmic binding fold. This CD includes the C-terminal substrate binding domain of LTTRs involved in degradation of aromatic compounds, such as CbnR, BenM, CatM, ClcR and TfdR, as well as that of other transcriptional regulators clustered together in phylogenetic trees, including XapR, HcaR, MprR, IlvR, BudR, AlsR, LysR, and OccR. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the substrate-binding domains from ionotropic glutamate receptors, LysR-like transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	2.33368e-60
NZ_CP013079.1\|WP_010929789.1\|3618595_3619114_+\|MgtC/SapB-family-protein	gnl\|CDD\|224204	COG1285, SapB, Uncharacterized membrane protein [Function unknown].	1.12064e-44
NZ_CP013079.1\|WP_003814701.1\|3622835_3623306_+\|universal-stress-protein	gnl\|CDD\|366180	pfam00582, Usp, Universal stress protein family. The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, though UspA lacks ATP-binding activity.	9.38587e-30
NZ_CP013079.1\|WP_010929931.1\|3627336_3628485_-\|CoA-transferase	gnl\|CDD\|367110	pfam02515, CoA_transf_3, CoA-transferase family III. CoA-transferases are found in organisms from all lines of descent. Most of these enzymes belong to two well-known enzyme families, but recent work on unusual biochemical pathways of anaerobic bacteria has revealed the existence of a third family of CoA-transferases. The members of this enzyme family differ in sequence and reaction mechanism from CoA-transferases of the other families. Currently known enzymes of the new family are a formyl-CoA: oxalate CoA-transferase, a succinyl-CoA: (R)-benzylsuccinate CoA-transferase, an (E)-cinnamoyl-CoA: (R)-phenyllactate CoA-transferase, and a butyrobetainyl-CoA: (R)-carnitine CoA-transferase. In addition, a large number of proteins of unknown or differently annotated function from Bacteria, Archaea and Eukarya apparently belong to this enzyme family. Properties and reaction mechanisms of the CoA-transferases of family III are described and compared to those of the previously known CoA-transferases.	7.23571e-127
NZ_CP013079.1\|WP_003820700.1\|3622402_3622747_+\|TIGR01244-family-phosphatase	gnl\|CDD\|225984	COG3453, COG3453, Uncharacterized protein conserved in bacteria [Function unknown].	3.40043e-35
NZ_CP013079.1\|WP_010929929.1\|3629501_3630662_-\|acyl-CoA-dehydrogenase-family-protein	gnl\|CDD\|173849	cd01160, LCAD, Long chain acyl-CoA dehydrogenase. LCAD is an acyl-CoA dehydrogenases (ACAD), which is found in the mitochondria of eukaryotes and in some prokaryotes. It catalyzes the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of LCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. LCAD acts as a homodimer.	4.16688e-115
NZ_CP013079.1\|WP_010929577.1\|3624246_3625197_-\|IS481-like-element-IS481-family-transposase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	9.02206e-23

>NZ_CP013079.1|WP_003814701.1|3622835_3623306_+|universal-stress-protein
MFKKILIPTDGSPLSAQAANAGICFARSTGAEVVALHVTQPFAATIGFDGMAAAYAITDEDYEKASAEQAEKYLKLILDRAETAGVKAESRAVSNFNVADGIVQAAGEAGCDLIFIGSHGRSGLSRLLLGSVTAKVLSLAHTAVLVYRVKEDKDKK
>NZ_CP013079.1|WP_003820700.1|3622402_3622747_+|TIGR01244-family-phosphatase
MSAAIKPLTENFAVAPQLGPADMADVAAAGYKSVIINRPDFEGGPDQPTAADVSQAAQALGLQVEYQPVVGSAMTAADVARFAELLRTMPGPVLAYCRTGTRCTNLFAAAQQLG
>NZ_CP013079.1|WP_010929788.1|3620902_3622303_+|PLP-dependent-aminotransferase-family-protein
MRQADATLVTQLADDLARRIDEHGLRPGTRLPSIRRMAEQSGVSRFTVVEAYDRLVARGLVQSRHGAGFFVRARSASLTALASARVPQAAPETPVRVDVSWLLRNMFRETAAGMPGGAGLLPPEWLDPDMVAAAVRAVGRTVRGNLVSYGSPQGYAPLRQQLASMLQADGVPAHPERNLLTTNGVTHGLDIVARHLIKPGDTVLVEDPAWFVIFGRLAAFGARPVGVPRGPDGPDLAMLDRLAAEHKPRLYIINGAVHNPIGHTLSAGAAYDILRLAERHDFMVVEDDTYADLHPGGAMKLAALDRLERVILVGGFSKMLAASLRVGYIAAGAETLQRLTDLKMLAGLTSPELGERVVHRVLVEGQYQRHIERVRARVNEARLRSIQALQQLGLSVPHEPHAGMFVWADCGRDSEPVARNAAERGMLLAPGTLFSPSGAPSTMLRFSVAMVDTPGIWQSIAAVMAQ
>NZ_CP013079.1|WP_010929789.1|3618595_3619114_+|MgtC/SapB-family-protein
MDTVWMEIWTTVRNEFADIPDVAEATRIVLRLGMAVALGGLLGYERERSGKAAGLRTHMLVALGAALFVLVPLQGGMEVGDLSRVLQGVIAGIGFLGAGVIIKLGNEGEIRGLTTSAGIWLTAAIGVAAGMGREATALASTLIALFVLAALRRLEKRIAARDDKRVVAQPPP
>NZ_CP013079.1|WP_003814694.1|3617729_3618485_-|TerC-family-protein
MDYLVSLAQQPAAWAALATLIAMEVVLGIDNLIFISILTNKLPPQHQTKARRIGIGMALILRLALLGTVAFIVQLTQPVFELFGHGFSWRDVILVAGGLFLVWKATKEIHHHVDPNPGDDMFGGKAATLGFAAAVAQILMLDLVFSIDSIITAVGMTEHIPIMFVAVIVAVAVMLLAAEPLARFIERNPTVVMLALAFLMMIGMTLIAEGFGAHVPKGYIYAAMAFSALVEGLNMMARRAREGRGAGAAGG
>NZ_CP013079.1|WP_003814691.1|3616301_3617534_-|CoA-transferase
MSGPLEGVRILDVTTVLMGPYATQILGDLGADVIKVEPPAGDNVRGIGPGRHADMGGIFLHANRSKRSIALDLKNPAGREALLKVAATCDVLVYNVRPQAMARLGLSYAEVAQANPSILYVGMYGYDQRGPYAARAAYDDLIQGAVGIPSLSVEAGSDIPRYAPSAMVDRIVGISAANAVTAGLYHRARTGQGQAIDVPMFETMAHLILGDHMMGQTFEPPLGPPGYPRILNADRRPYATRNGHICVLLYADKHWKAFFELIGQPGRDAADPRFRDIGTRTQHIHAIYRLVSDAIASRTTEEWLAAFEAADIPAMPVHTMASLLRDPHLEAIGFFGMVDHPSEGAVRMMAVPSRWSGTPPQPRGHAPRLGEHSVDVLKEAGYDDEAIAALVRNGAAIAAARQLPEGTDHD
>NZ_CP013079.1|WP_010929791.1|3615523_3616309_-|crotonase/enoyl-CoA-hydratase-family-protein
MTDFLRHERHGGVLLLTMDRERTRNALSDADAVEALVQACARIGADLSVRAVVLTGSHGVFSSGGNLKTLSDTVGAGLGEPVHSLQAYRSGIQRIPLALYNLEVPTIAAVNGPAIGAGCDLACMCDIRLAARQASFAESFVKLGLTPGDGGAWLLPRIVGMSRACELAFTGRSIDAARARELGLVSEVFDADALLPAALALAQEIAQHSGHALRLTKRLLREGQHTRLDTLLELSAGFQALAHHTQEHAGALDAHLSRKRG
>NZ_CP013079.1|WP_003814685.1|3614485_3615457_-|tripartite-tricarboxylate-transporter-substrate-binding-protein
MHSRTLALALLSVAALAQGGSARAASDYPAHPVKIIVSLPPGSGADTTARFLSKHLAERFKQPFVVENRPGGNSFIAAQAVATAPPDGYTLFVASNSPMTTNAAVFKNLPYDAVKDFAPVAPIARFPMALVVPANSPYRSVADLVAAARAAPGQLNFASGTATYQVVLELFHEQNGIKATHVPYKGTSAALADVAGGVVQYSVADVSAALPLIRGGKLRPLAVTSTRRIKDLPDVPTMQESGNKGFEAYAWTAAFFPAKVDPAIVARVSDAVQALVRSQEGKAFMEQLGGEPFVGGPDTLAAFQRDELASMRRIAKLANIQQE
>NZ_CP013079.1|WP_003814681.1|3613497_3614475_+|LysR-family-transcriptional-regulator
MWTGQYIVHIASPAHHWRRAVELRQLKQLLVLSETLNFHRAAERLHMAQPPLSTAIKKLEQELGVQLFERLPAGLQPTPAAEVVLRYARATLFYADEIQRAAQEGASGKQGMLKVGFVGSSIYSLMPQLLSAFRKDYPRVDLVIEESTTVDLLRRLDAHTLDVALVRFPVLEPSTARITLLQADHLMLAVPAGSRYAQRDDVALDELADEPFIGYSRTHVPGMHALIMYAFQQYGVVPHIAQEAIQVQTILSLVESGLGLAIVPKVACRQAGSGVRLVNVPQLAETIKVGIALAVHPDNATPTTANFVDMACRLMQTEPAAGQAR
>NZ_CP013079.1|WP_019247419.1|3612199_3613372_-|acyl-CoA-dehydrogenase-family-protein
MGAILGTIIEALQLAAIPAHDEALRPAVRAFLDEALREMPADRRARSWMGHDAEFSRALARQGWLGLTLPVEYGGAGRSNFARFVLSEELLAVGAPVSAHWVADRQTAPLILRFGSPAQRAFYLPRIIRGEAFFAIGMSEPDTGSDLASVRTRATPVADGWLLNGRKIWTTNAHRSHYMCALVRTSGAPEDRHRGLSQMIFDLALPGIEIRPIRDIAGDAHFCEVLFDNVLLPHDALVGEEGSGWRQVMAELALERSGPERIYSSMVLLDGWLAHLRCDAAPQRAQVCLAGRLAARLAVLRSMSLAVSQRLEQGADASLAAVLVKDLGTEFEQAVPELIGQALHASPQPAPDDVLMRTLAYLTLINPTFSLRGGTRHILRGIIARELGLR
>NZ_CP013079.1|WP_019247421.1|3623716_3624115_+|GTP-binding-protein
MTRRTSIERYRNIGISAHIDAGKATTTERILFYTGITHKLGEVHEGAATMDWMEQEQGRGITITSAATTAFWRGMAGNYPEHRINIIDTPGHVDFTIEVERSMRVLDGACMVYDSVGGVQEVATVMVVLPGQ
>NZ_CP013079.1|WP_010929577.1|3624246_3625197_-|IS481-like-element-IS481-family-transposase
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDKYNLLTVHS
>NZ_CP013079.1|WP_010929933.1|3625295_3626243_-|dihydrodipicolinate-synthase-family-protein
MQASHGARIDEQTSGVYVIAATPFADDGELDLASLDSLTDFYLDKDVAGLTILGMMGEASKLTEAETATVMTRILKRVDGRVPVVVGVSHPSNRHLERLARQAMELGAAGVMVAPAAGRHTDDQVYGYYATVAERLGADIPICLQDFPQSAGVHTSVAVIHRLVDDFPQVVMLKHEDFPGMRKLSQVRARSEAEGRRRISILVGNGGLFLPQEMLRGADGAMTGFAYPEMLVQVCRLFAAGKAEAAEDLFNLYLPLLRHEFQYGIGLALRKETLRRRGAIRSAYVRQPGPALDAVDHAELGRLIARLEAQLGRAA
>NZ_CP013079.1|WP_010929932.1|3626449_3627340_+|LysR-family-transcriptional-regulator
MKLNLRQIEVFRAVMITGSIRGASELLFVSQPAVSRLLSHMEQRIGFALFERIRGRLYATLEARKLFHEVEAVYAGVQRVNDMARDLFEHQEGILNLVASPSLGQMLIPAAIAQYRQAHPQVKLSFHHLTQAPLTERLLKRQADLALTILPAGHPNLEQEEIGAARMVLICPPGHPLAGREPVGAEALAPYPLVAYERGSAFGQKLQAWFDAQSVAARPVIEVGSPQNTCALVQAGAGVALVDEFSARSWPGAGFVMRPVRDLAPLTAYLLRLREEPASHLMQSFIETLRRVMRRA
>NZ_CP013079.1|WP_010929931.1|3627336_3628485_-|CoA-transferase
MLNHALAGITVLDFSQGIAGPHGACLLGEMGAEVIKIEPPAGDWLRGLGHRQGGTSVLFGYFNRGKAGVALDLKDHAQRRQALALIDKADVLIESNRPGVMARLGLGYEQARQRNPGLVYISVTGFGQDGPHRDLPATDAAMQAYSGFSFGAGDMRDPVRVRVSVVDIVTGVYVSNAALAALMARHGNQGQGQYIDLSLMHGISAVQGAKYAEHAATRGVISRELYAAIGIYPTRDGHIALSAMRDQQVTDFIGLAGRADLLADPRYATQQARYDNQDELRALIAAELAKQPTAHWIEAARRIDLICQPVQTYDQFRQDPQVRTYELFQDMDLGYDMPLPAVRMPGMTATQASLRPPPRLGADTAAVLRRHGASPPSADATP
>NZ_CP013079.1|WP_010929930.1|3628492_3629464_-|tripartite-tricarboxylate-transporter-substrate-binding-protein
MHGKNALRALLAGLALGATAAGAAPYPERPVRLIAPIAVGGLTDTLARLVASGLADKLGQPVVVENKPGAGGIIGMEAAAQAAPDGYTLILVYQGVAAVNASLYKNLPYDTRRDFAPVAGLGNFPLVLVASPASGIQSVGALLERAGKQAKAPSYASAGNATTSHLTMELFKNASGLQALHVPYKGEGPANTDVAGGQVDIAFSSLASVAPLVKSGRLVALGISTPERSAVLPDVPTIAQAGVADFEAVGWYGLLAPAGTPAEVVAKLSDAVAAVLDQPAIRAKLEALGVNARATPAADFGRQIDAETEKWRAVIQTAGITLD
>NZ_CP013079.1|WP_010929929.1|3629501_3630662_-|acyl-CoA-dehydrogenase-family-protein
MQFTHEHRELARTTRRIIAEHLDPYLDEWEAAQMFPAHQVMKALGSAGLLGIGKPAEYGGMALDFSYEMVFAETLGEVRSSGLSSAIGVQSTMCTPALARHGSDALKRAYLAPTIAGDLVGCIGASEASAGSDVSQIKTWARRDGDDYVINGSKMWITNGVQGDWICLLCNTSQEGGPHKNKSLIIVPLDTPGVSVSRKLDKLVLRASDTAELFFDDVRVPVSNRIGAENMGFIYQMEQFQEERMFVAARGMRSMERVIEETIAYAGQRQVFGGTVLSNQVVYHKLAQMQTEIEALRSLLYRAIGQYLDGQDITQLASMAKYCAGRLSMRIPNECLQFWGGQGVMNENWISRAYRDLRQTAIGGGANEIMLEVIAKTMGIHPGKRA
>NZ_CP013079.1|WP_003815550.1|3630672_3631065_-|MaoC-family-dehydratase
MRNTMTQRLEEVSMRVTQADIDIYAELTDDFNPLHVDPAFAATTPMGGTIAHGTLSVNLIWQSLARSLGAAALARIDLDIRFLKPLFAGGAITAGGQPDAAEPDRYEVWVKGADGATLIAGHARLAPITD
>NZ_CP013079.1|WP_010929928.1|3631061_3631457_-|hypothetical-protein
MTQLYTYETFTPGTVLGEWAEPLDARLVATWGRLFGAEARDQPARQVGLTVALMIRAYLNVVTPRPPGNIHAQQILSIDGLPGVGETVRSRIRCLGKEIRRERRYLQLEVSGVGERERNLYTGRMNLIWAA
>NZ_CP013079.1|WP_003815546.1|3631453_3631855_-|Zn-ribbon-domain-containing-OB-fold-protein
MDKPPITPNAESLPFWQGCRDHRLRYQQCASCGTVQRIPRAVCTHCHGRALQWRDSAGQGVVLSHTTVRRAPTPAFKADTPYAIALVDLDEGFRLMVNVRGGAGAPLAIGARVRIVFEARGDGAVPIAEMETP

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

27282 : 70036

Synechococcus_phage(50.0%)

transposase,tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010930363.1\|27282_28233_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_023995007.1\|28314_28650_-	CoA transferase	NA	NA	NA	NA
WP_010929578.1\|28674_29109_-	OB-fold domain-containing protein	NA	NA	NA	NA
WP_019247164.1\|29141_30359_-	thiolase family protein	NA	NA	NA	NA
WP_010929580.1\|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA
WP_019247165.1\|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_010929582.1\|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA
WP_010929583.1\|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA
WP_010929584.1\|34625_35576_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_003814398.1\|35572_36763_-	MFS transporter	NA	NA	NA	NA
WP_010929585.1\|37012_37924_+\|tRNA	glycine--tRNA ligase subunit alpha	NA	NA	NA	NA
WP_010929586.1\|37925_40064_+\|tRNA	glycine--tRNA ligase subunit beta	NA	NA	NA	NA
WP_003814404.1\|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA
WP_003814405.1\|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA
WP_010929587.1\|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA
WP_019247766.1\|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA
WP_003814412.1\|42687_43218_+	peptide deformylase	E3SLL2	Synechococcus_phage	3.7e-12	35.4
WP_010929588.1\|43663_44614_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010929589.1\|45200_45749_+	hypothetical protein	NA	NA	NA	NA
WP_003815265.1\|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_003815255.1\|46084_46978_+	AEC family transporter	NA	NA	NA	NA
WP_010929590.1\|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA
WP_003817748.1\|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA
WP_010929591.1\|50141_51092_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_029443813.1\|51134_52391_+	muropeptide transporter	NA	NA	NA	NA
WP_010929592.1\|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA
WP_019247224.1\|54362_54953_-	amino acid ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.2e-20	33.6
WP_003817737.1\|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA
WP_023852650.1\|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA
WP_010929594.1\|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_005012808.1\|57497_58448_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010929595.1\|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA
WP_047122776.1\|60474_60888_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_010929597.1\|61077_62019_-	hypothetical protein	NA	NA	NA	NA
WP_019248755.1\|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_010929599.1\|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA
WP_010929600.1\|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA
WP_029443770.1\|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA
WP_019247832.1\|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA
WP_010929603.1\|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA
WP_005012808.1\|69085_70036_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA

DBSCAN-SWA_2

77634 : 136108

Planktothrix_phage(22.22%)

transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005012067.1\|77634_78585_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_041166334.1\|78659_79604_+\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_010929608.1\|79600_81475_-	O-antigen biosynthesis protein WlbL	A0A2P1ELS8	Moumouvirus	2.0e-23	26.9
WP_003807102.1\|82822_83527_-	O-antigen biosynthesis protein WlbI	NA	NA	NA	NA
WP_010929609.1\|83523_84696_-	O-antigen biosynthesis protein WlbH	NA	NA	NA	NA
WP_010929610.1\|84891_85485_-	O-antigen biosynthesis protein WlbG	NA	NA	NA	NA
WP_010929611.1\|85481_86714_-	O-antigen biosynthesis protein WlbF	NA	NA	NA	NA
WP_010929612.1\|86731_87991_-	O-antigen biosynthesis protein WlbE	NA	NA	NA	NA
WP_010929613.1\|88014_89103_-	O-antigen biosynthesis protein WlbD	A0A0N9R0B2	Chrysochromulina_ericina_virus	4.8e-46	36.3
WP_010929614.1\|89110_90211_-	O-antigen biosynthesis protein WlbC	A0A2K9L0G1	Tupanvirus	3.3e-31	29.7
WP_003807114.1\|90214_90790_-	O-antigen biosynthesis protein WlbB	NA	NA	NA	NA
WP_003807115.1\|90793_91846_-	O-antigen biosynthesis protein WlbA	NA	NA	NA	NA
WP_010929615.1\|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA
WP_010929616.1\|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA
WP_003807124.1\|94288_94444_-	hypothetical protein	NA	NA	NA	NA
WP_010929617.1\|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA
WP_010929618.1\|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA
WP_010929619.1\|96209_97340_+	ABC transporter permease	NA	NA	NA	NA
WP_003807131.1\|97339_98179_+	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	9.1e-21	32.4
WP_010929620.1\|99111_99714_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA
WP_010929621.1\|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_003807138.1\|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	B6DZZ7	Stx2-converting_phage	6.2e-66	40.5
WP_010929622.1\|101833_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA
WP_003818417.1\|102808_103084_+	YbeD family protein	NA	NA	NA	NA
WP_010929623.1\|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA
WP_003807146.1\|103815_104817_+	lipoyl synthase	NA	NA	NA	NA
WP_003807148.1\|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A291LA62	Escherichia_phage	3.7e-47	53.4
WP_010929624.1\|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA
WP_010929625.1\|106330_107392_-	dTDP-glucose 4,6-dehydratase	A0A1D7XFE8	Escherichia_phage	1.6e-78	44.8
WP_010929626.1\|107427_108378_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010929627.1\|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA
WP_010929628.1\|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA
WP_010927242.1\|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA
WP_023853376.1\|111936_113619_-\|tRNA	arginine--tRNA ligase	NA	NA	NA	NA
WP_003815933.1\|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA
WP_003815930.1\|114344_114662_+	hypothetical protein	NA	NA	NA	NA
WP_010931363.1\|114944_115961_+\|transposase	IS110-like element IS1663 family transposase	NA	NA	NA	NA
WP_003815929.1\|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA
WP_003815927.1\|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA
WP_010929633.1\|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_010929634.1\|119054_120095_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	6.0e-22	33.7
WP_010929635.1\|120200_121022_-	phosphodiesterase	NA	NA	NA	NA
WP_005012067.1\|121122_122073_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_014905488.1\|122171_123077_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	9.8e-21	31.7
WP_003815918.1\|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA
WP_010929637.1\|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA
WP_019247800.1\|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA
WP_010929638.1\|127033_128287_+	amidase	NA	NA	NA	NA
WP_010929639.1\|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA
WP_010929640.1\|130504_131152_-	hypothetical protein	NA	NA	NA	NA
WP_023853393.1\|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA
WP_003815905.1\|132682_132985_+	bacterioferritin-associated ferredoxin	NA	NA	NA	NA
WP_010929512.1\|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_005012067.1\|135157_136108_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA

DBSCAN-SWA_3

164893 : 225404

Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)

transposase,tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005015810.1\|164893_165844_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010929659.1\|167287_168190_-	YgcG family protein	NA	NA	NA	NA
WP_003815889.1\|168167_168797_-	LemA family protein	NA	NA	NA	NA
WP_010929660.1\|169079_170510_+	DEAD/DEAH box helicase	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	5.8e-44	29.8
WP_010929661.1\|170543_171173_+	LysE family transporter	NA	NA	NA	NA
WP_003815895.1\|171221_172829_+	peptide chain release factor 3	A0A2K9L6L3	Tupanvirus	9.3e-14	37.8
WP_010929663.1\|172853_173537_+	hypothetical protein	NA	NA	NA	NA
WP_003815898.1\|173618_174095_-	bacterioferritin	NA	NA	NA	NA
WP_010929591.1\|174301_175252_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010929664.1\|176367_176895_+	META domain-containing protein	NA	NA	NA	NA
WP_010929665.1\|176986_177802_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA
WP_003808370.1\|177862_178597_+	sulfurtransferase	NA	NA	NA	NA
WP_010929666.1\|178634_180713_-\|tRNA	methionine--tRNA ligase	A0A1V0SHR2	Klosneuvirus	1.5e-27	23.6
WP_003808374.1\|180962_181235_-	hypothetical protein	NA	NA	NA	NA
WP_033446322.1\|181336_182422_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA
WP_010929668.1\|182425_184330_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA
WP_014486044.1\|184326_188001_+	translocation/assembly module TamB domain-containing protein	NA	NA	NA	NA
WP_010929670.1\|188061_188625_+	dCTP deaminase	S5VM63	Pseudomonas_phage	2.6e-72	75.3
WP_003808385.1\|188632_189055_-	VOC family protein	NA	NA	NA	NA
WP_010929671.1\|189082_189502_-	VOC family protein	NA	NA	NA	NA
WP_076879599.1\|189530_190004_-	GNAT family N-acetyltransferase	Q9AZG4	Lactococcus_phage	2.2e-11	31.1
WP_003808391.1\|190103_190601_+	hypothetical protein	NA	NA	NA	NA
WP_003808393.1\|190755_193026_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA
WP_010929672.1\|193074_194307_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_010929591.1\|194405_195356_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010929673.1\|195458_196094_+	superoxide dismutase	Q56AR7	Bacillus_thuringiensis_phage	2.8e-83	73.8
WP_019248671.1\|196090_196984_+	ZIP family metal transporter	NA	NA	NA	NA
WP_010929675.1\|197378_198479_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA
WP_010929676.1\|198560_198935_+	glycine cleavage system protein GcvH	NA	NA	NA	NA
WP_010929677.1\|198994_201859_+	aminomethyl-transferring glycine dehydrogenase	E3SN07	Prochlorococcus_phage	1.2e-261	51.4
WP_010929678.1\|202003_202744_-	FadR family transcriptional regulator	NA	NA	NA	NA
WP_010929679.1\|202813_204025_+	CoA transferase	NA	NA	NA	NA
WP_010929680.1\|204053_205022_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_005013747.1\|205635_206586_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010929699.1\|206742_207066_+	phosphate starvation-inducible protein	NA	NA	NA	NA
WP_023853200.1\|207170_208211_-	cyclase family protein	NA	NA	NA	NA
WP_010929697.1\|208216_208996_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA
WP_003807672.1\|209041_209338_-	YciI family protein	NA	NA	NA	NA
WP_003807674.1\|209363_209639_-	muconolactone Delta-isomerase	NA	NA	NA	NA
WP_003819086.1\|209695_210340_-	CoA transferase subunit B	NA	NA	NA	NA
WP_010929696.1\|210339_211026_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA
WP_010929695.1\|211155_212007_+	IclR family transcriptional regulator	NA	NA	NA	NA
WP_010929694.1\|212057_212783_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_010929693.1\|212814_214164_-	short-chain fatty acid transporter	NA	NA	NA	NA
WP_010929692.1\|214275_215208_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA
WP_033446404.1\|215665_218461_-\|protease	serine protease autotransporter SphB1	NA	NA	NA	NA
WP_010929690.1\|219054_221997_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA
WP_010929689.1\|222068_222788_+	7-cyano-7-deazaguanine synthase QueC	A0A0A0RPC6	Escherichia_phage	8.0e-50	43.9
WP_010929688.1\|222826_223375_-	N-acetyltransferase	A0A2H4J136	uncultured_Caudovirales_phage	1.2e-21	41.7
WP_010929687.1\|223529_224429_+	virginiamycin B lyase	NA	NA	NA	NA
WP_005012808.1\|224453_225404_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA

DBSCAN-SWA_4

233336 : 286924

Bacillus_phage(25.0%)

transposase,tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005012067.1\|233336_234287_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010927663.1\|234373_235324_+\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_010930742.1\|235320_236271_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010929700.1\|236369_237167_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_003814363.1\|238116_238527_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA
WP_003814358.1\|239548_240292_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_003814356.1\|240335_241379_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA
WP_003814355.1\|241549_243652_+	TRAP transporter large permease subunit	NA	NA	NA	NA
WP_003814351.1\|245062_246019_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_010929701.1\|246037_246529_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA
WP_010929702.1\|246525_247881_-	polynucleotide adenylyltransferase PcnB	A0A1B1IVF3	uncultured_Mediterranean_phage	3.4e-25	36.8
WP_010929703.1\|247881_248580_-	HAD-IB family hydrolase	NA	NA	NA	NA
WP_010929704.1\|248576_249278_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA
WP_003814339.1\|249530_250580_+	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	5.6e-68	43.6
WP_003814337.1\|250685_251627_-\|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	NA	NA	NA	NA
WP_010929705.1\|251623_253513_-	DNA mismatch repair endonuclease MutL	A0A1B2LRQ5	Wolbachia_phage	3.3e-79	32.8
WP_003814332.1\|253599_254238_+	VTT domain-containing protein	NA	NA	NA	NA
WP_019247543.1\|254380_255766_-	N-acetylmuramoyl-L-alanine amidase	A0A2H4JCM7	uncultured_Caudovirales_phage	4.5e-17	30.3
WP_010929706.1\|255696_256233_-\|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	NA	NA	NA	NA
WP_010929707.1\|256384_257776_+	class II fumarate hydratase	NA	NA	NA	NA
WP_010929708.1\|257792_258773_-	AEC family transporter	NA	NA	NA	NA
WP_003814324.1\|258908_259892_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA
WP_010929709.1\|259956_260856_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_003814321.1\|260962_262717_+	gamma-glutamyltransferase	NA	NA	NA	NA
WP_010929710.1\|262724_263849_-	CoA transferase	NA	NA	NA	NA
WP_010929711.1\|263862_264843_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_005012067.1\|265573_266524_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010929712.1\|267083_267629_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA
WP_010929713.1\|267712_269332_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA
WP_004567834.1\|269347_270502_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA
WP_003817696.1\|270515_270641_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA
WP_010929714.1\|270637_272389_+	thiol reductant ABC exporter subunit CydD	W8CYL7	Bacillus_phage	3.4e-09	23.8
WP_010929715.1\|272385_274065_+	thiol reductant ABC exporter subunit CydC	W8CYL7	Bacillus_phage	3.6e-16	27.6
WP_010929716.1\|274127_274676_+	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	1.3e-28	43.1
WP_010929717.1\|275818_276097_+	DUF4148 domain-containing protein	NA	NA	NA	NA
WP_005012067.1\|277140_278091_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_173651708.1\|278108_278255_+	hypothetical protein	NA	NA	NA	NA
WP_010929718.1\|278368_278530_+	DUF4224 domain-containing protein	NA	NA	NA	NA
WP_010929719.1\|278537_278678_+	hypothetical protein	NA	NA	NA	NA
WP_003815821.1\|279196_279646_-\|protease	ClpXP protease specificity-enhancing factor	NA	NA	NA	NA
WP_003815819.1\|279655_280267_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA
WP_019247426.1\|280425_281280_-	cytochrome c1	NA	NA	NA	NA
WP_003815816.1\|281299_282682_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA
WP_003815815.1\|282746_283388_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA
WP_010929721.1\|283527_283986_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA
WP_010927226.1\|284010_284787_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA
WP_014906092.1\|284840_285977_+	trypsin-like peptidase domain-containing protein	W5SAB9	Pithovirus	1.2e-07	31.2
WP_005015810.1\|285973_286924_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA

DBSCAN-SWA_5

555309 : 614609

Acinetobacter_phage(27.27%)

transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_023852617.1\|555309_556260_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_003815367.1\|557583_558360_-	enoyl-CoA hydratase	NA	NA	NA	NA
WP_010931383.1\|558394_560167_+	M61 family metallopeptidase	NA	NA	NA	NA
WP_010931382.1\|560168_561071_-	NAD(P)/FAD-dependent oxidoreductase	G3MA85	Bacillus_virus	1.9e-08	24.0
WP_003817821.1\|561195_561555_+	dihydroneopterin aldolase	NA	NA	NA	NA
WP_010931381.1\|561586_562549_+\|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	A0A0U2S5Z2	Escherichia_phage	4.6e-93	64.5
WP_005012067.1\|562647_563598_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010931380.1\|563610_564546_-	D-2-hydroxyacid dehydrogenase family protein	A0A1J0F959	Only_Syngen_Nebraska_virus	6.4e-15	27.7
WP_010931379.1\|564605_565445_-	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA
WP_010931378.1\|565441_566611_-	UbiH/UbiF family hydroxylase	NA	NA	NA	NA
WP_003815379.1\|566607_567897_-	murein transglycosylase A	NA	NA	NA	NA
WP_003815381.1\|567939_568314_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA
WP_003815384.1\|568419_569157_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA
WP_010931377.1\|569164_569869_+	phosphoglycolate phosphatase	NA	NA	NA	NA
WP_010931376.1\|570132_571653_+	anthranilate synthase component I	S4VT78	Pandoravirus	9.0e-43	32.1
WP_003815390.1\|571708_572272_+	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	1.1e-65	62.1
WP_003817833.1\|572290_573322_+	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	7.4e-73	42.7
WP_010931375.1\|573318_574107_+	indole-3-glycerol phosphate synthase TrpC	A0A0P0IR83	Acinetobacter_phage	5.1e-66	53.0
WP_019247413.1\|574127_574286_-	hypothetical protein	NA	NA	NA	NA
WP_023997720.1\|574282_575272_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_005012067.1\|577028_577979_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010931374.1\|579201_580104_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_003814312.1\|580105_580960_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA
WP_010931373.1\|581006_582116_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_010931372.1\|582126_582645_-	flavin reductase family protein	NA	NA	NA	NA
WP_003814302.1\|582674_583307_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA
WP_003814300.1\|583378_584038_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA
WP_003814298.1\|584034_585255_-	MFS transporter	NA	NA	NA	NA
WP_019247745.1\|585523_586396_+\|tRNA	tRNA threonylcarbamoyladenosine dehydratase	NA	NA	NA	NA
WP_010931370.1\|586551_587289_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_010931369.1\|587291_588923_-	AMP-binding protein	NA	NA	NA	NA
WP_010931368.1\|589018_590008_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_010927020.1\|590004_590715_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_010931363.1\|590810_591827_-\|transposase	IS110-like element IS1663 family transposase	NA	NA	NA	NA
WP_003814287.1\|592098_592725_-	aminotransferase class IV	NA	NA	NA	NA
WP_010931367.1\|592780_593908_-	aminodeoxychorismate synthase component I	S4VT78	Pandoravirus	3.8e-38	37.8
WP_003814283.1\|593913_599631_-	excinuclease ABC subunit UvrA	A0A1B1IVR3	uncultured_Mediterranean_phage	1.0e-195	39.5
WP_003814277.1\|600198_601143_-	LysR family transcriptional regulator	A0A2P0ZL89	Lactobacillus_phage	8.4e-07	23.2
WP_003814275.1\|601331_602267_+	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_010931365.1\|602384_603956_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_019247692.1\|604035_605244_+	ABC transporter permease	NA	NA	NA	NA
WP_019247693.1\|605741_606659_+	DMT family transporter	NA	NA	NA	NA
WP_003814254.1\|609019_609241_+	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA
WP_010929632.1\|609571_610588_+\|transposase	IS110-like element IS1663 family transposase	NA	NA	NA	NA
WP_003814252.1\|610672_610924_-	cell division topological specificity factor MinE	NA	NA	NA	NA
WP_003814250.1\|610927_611743_-	septum site-determining protein MinD	NA	NA	NA	NA
WP_010931362.1\|611855_612734_-	septum site-determining protein MinC	NA	NA	NA	NA
WP_003820957.1\|612845_614609_-\|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	A0A222YZ70	Escherichia_phage	5.0e-162	50.0

DBSCAN-SWA_6

620764 : 674505

Salmonella_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010930179.1\|620764_621715_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_023994844.1\|621810_622782_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_010931357.1\|622786_623467_-	tellurite resistance TerB family protein	NA	NA	NA	NA
WP_003814742.1\|623604_623997_+	OsmC family protein	NA	NA	NA	NA
WP_023994644.1\|624104_625121_-\|transposase	IS110-like element IS1663 family transposase	NA	NA	NA	NA
WP_003814739.1\|625360_626146_-	enoyl-ACP reductase FabI	NA	NA	NA	NA
WP_010931356.1\|626240_627650_-	transglycosylase SLT domain-containing protein	NA	NA	NA	NA
WP_010927090.1\|627660_628461_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA
WP_010931355.1\|628481_629252_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_010931354.1\|629294_629762_+	ribonuclease HI	J9Q745	Salmonella_phage	5.6e-36	50.7
WP_005013747.1\|629758_630709_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_003818344.1\|632657_633536_-	fatty acid desaturase	NA	NA	NA	NA
WP_019247959.1\|634462_637441_-	hypothetical protein	NA	NA	NA	NA
WP_010931070.1\|637794_638745_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010931353.1\|638741_639830_-	NAD(P)H-binding protein	NA	NA	NA	NA
WP_010931352.1\|639865_640729_-	MaoC family dehydratase N-terminal domain-containing protein	NA	NA	NA	NA
WP_010931351.1\|641868_642258_-	OB-fold domain-containing protein	NA	NA	NA	NA
WP_014486103.1\|642261_643044_-	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA
WP_047122778.1\|643077_643863_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_010931349.1\|644138_645278_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_010931348.1\|645274_646066_+	ATP-binding cassette domain-containing protein	A0A1M7XV31	Cedratvirus	1.7e-08	29.4
WP_010931347.1\|646062_646812_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.9e-09	27.8
WP_010931346.1\|646808_647681_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
WP_004566224.1\|647680_648682_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
WP_003808195.1\|648678_649842_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA
WP_003808193.1\|649867_650551_+	TetR family transcriptional regulator	NA	NA	NA	NA
WP_019247312.1\|650504_651839_+	AMP-binding protein	NA	NA	NA	NA
WP_010931344.1\|651831_652926_+	CoA transferase	NA	NA	NA	NA
WP_005012067.1\|653692_654643_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010931343.1\|656583_657843_+	YeaH/YhbH family protein	NA	NA	NA	NA
WP_003814858.1\|657839_659378_+	SpoVR family protein	NA	NA	NA	NA
WP_003814856.1\|659374_660571_-	MFS transporter	NA	NA	NA	NA
WP_010931342.1\|660567_661944_-	MmgE/PrpD family protein	NA	NA	NA	NA
WP_003814852.1\|661955_662972_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_010927102.1\|663040_664276_-	methylaspartate ammonia-lyase	NA	NA	NA	NA
WP_010931341.1\|664376_665171_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_010929282.1\|665540_665948_+	GFA family protein	NA	NA	NA	NA
WP_010929281.1\|666365_666638_-	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_124740609.1\|666807_667032_+	hypothetical protein	NA	NA	NA	NA
WP_003814832.1\|667219_668074_+	urease accessory protein UreD	NA	NA	NA	NA
WP_010931340.1\|668174_668477_+	urease subunit gamma	NA	NA	NA	NA
WP_003814828.1\|668521_669139_+	HupE/UreJ family protein	NA	NA	NA	NA
WP_010931338.1\|669155_669464_+	urease subunit beta	NA	NA	NA	NA
WP_010931337.1\|669460_671176_+	urease subunit alpha	NA	NA	NA	NA
WP_014905506.1\|671178_671796_+	urease accessory protein UreE	NA	NA	NA	NA
WP_019247677.1\|671896_672481_+	urease accessory protein UreF	NA	NA	NA	NA
WP_010931336.1\|672505_673150_+	urease accessory protein UreG	NA	NA	NA	NA
WP_010929956.1\|673554_674505_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA

DBSCAN-SWA_7

723443 : 763393

Pseudomonas_phage(33.33%)

transposase,tRNA,integrase,protease

attL 720691:720709|attR 740579:740597

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
720691:720709	attL	NA	NA	NA	NA
WP_010931308.1\|723443_724040_+\|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
WP_010931307.1\|724036_724819_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_010931306.1\|724891_725983_+	redox-regulated ATPase YchF	NA	NA	NA	NA
WP_010931305.1\|726262_727390_+\|integrase	site-specific integrase	A0A1B0VMI6	Pseudomonas_phage	1.4e-48	33.6
WP_010931304.1\|727731_728778_+	Fic family protein	NA	NA	NA	NA
WP_010931303.1\|728925_732045_+	DEAD/DEAH box helicase family protein	NA	NA	NA	NA
WP_010931302.1\|732046_734998_+	restriction endonuclease subunit M	G8I4P9	Mycobacterium_phage	2.9e-21	25.1
WP_010931301.1\|735013_736225_+	AAA family ATPase	NA	NA	NA	NA
WP_005013747.1\|736408_737359_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_077274087.1\|737375_737870_+	DUF4276 family protein	NA	NA	NA	NA
WP_019247740.1\|737873_738131_+	hypothetical protein	NA	NA	NA	NA
WP_019248455.1\|738674_739586_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA
WP_029443992.1\|739667_739952_+	ATP-dependent helicase	A0A1V0SIN4	Klosneuvirus	6.8e-05	34.1
WP_005012067.1\|740735_741686_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
740579:740597	attR	NA	NA	NA	NA
WP_019247178.1\|742104_744669_-	autotransporter domain-containing protein	NA	NA	NA	NA
WP_019247179.1\|744713_746567_-	autotransporter-associated beta strand repeat-containing protein	NA	NA	NA	NA
WP_014905963.1\|746899_748471_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_162291319.1\|749739_749895_-	hypothetical protein	NA	NA	NA	NA
WP_005012067.1\|749912_750863_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_014905961.1\|750948_751689_-	TetR family transcriptional regulator	NA	NA	NA	NA
WP_029443749.1\|751915_752863_-	hypothetical protein	NA	NA	NA	NA
WP_010929591.1\|754250_755201_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_023994811.1\|755218_755431_+	hypothetical protein	NA	NA	NA	NA
WP_003814139.1\|755394_756210_+	MerR family transcriptional regulator	NA	NA	NA	NA
WP_010931299.1\|756342_757782_+	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_003814142.1\|757795_758137_+	cupin domain-containing protein	NA	NA	NA	NA
WP_010931298.1\|758191_759847_+	gamma-glutamyltransferase family protein	NA	NA	NA	NA
WP_003814146.1\|759998_761009_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_003814148.1\|761141_761915_+	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_005012067.1\|762442_763393_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA

DBSCAN-SWA_8

773320 : 820938

Bovine_alphaherpesvirus(10.0%)

transposase,holin,tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005012808.1\|773320_774271_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_003818450.1\|774409_775162_+	uracil-DNA glycosylase	A0A1Y0B680	Bovine_alphaherpesvirus	2.5e-46	47.5
WP_010931273.1\|775400_777125_+	DEAD/DEAH box helicase	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	9.5e-49	32.9
WP_004566001.1\|777144_778404_+	SAM-dependent methyltransferase	NA	NA	NA	NA
WP_010931274.1\|778418_779513_-\|tRNA	CCA tRNA nucleotidyltransferase	A0A0F6YPT7	Sinorhizobium_phage	2.4e-50	50.5
WP_023995440.1\|779509_781636_-	lytic transglycosylase domain-containing protein	A0A0S2SXL7	Bacillus_phage	5.5e-14	36.6
WP_010931276.1\|781648_782329_+	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA
WP_003807204.1\|782606_783980_+	MHS family MFS transporter	NA	NA	NA	NA
WP_003818444.1\|783981_785001_+	histone deacetylase family protein	A0A2K9L473	Tupanvirus	3.4e-22	31.7
WP_003818443.1\|785064_786036_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_005013747.1\|786100_787051_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_003807199.1\|787149_787992_-	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA
WP_010931277.1\|787991_788327_-\|holin	phage holin family protein	NA	NA	NA	NA
WP_010931278.1\|788397_789816_-	adenosylhomocysteinase	S4VPF6	Pandoravirus	8.7e-40	29.4
WP_003807194.1\|790095_791136_-	glycosyltransferase family 1 protein	NA	NA	NA	NA
WP_003818441.1\|791215_791467_-	DUF1289 domain-containing protein	NA	NA	NA	NA
WP_010925730.1\|791577_792741_-	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	5.0e-126	60.8
WP_010931279.1\|793024_793879_+	lysophospholipid acyltransferase family protein	NA	NA	NA	NA
WP_010931280.1\|793875_794766_+	lysophospholipid acyltransferase family protein	NA	NA	NA	NA
WP_003807183.1\|794808_795720_+	diaminopimelate epimerase	NA	NA	NA	NA
WP_010931281.1\|795746_796439_+	DUF484 family protein	NA	NA	NA	NA
WP_010931282.1\|796453_797434_+	tyrosine recombinase XerC	A0A166YH27	Gordonia_phage	3.3e-14	30.5
WP_010931283.1\|797446_799588_-	TonB-dependent receptor	NA	NA	NA	NA
WP_003818434.1\|799636_800605_-	putative membrane protein	NA	NA	NA	NA
WP_019247300.1\|800595_801264_-	DUF1007 family protein	NA	NA	NA	NA
WP_010931286.1\|801224_802160_-	metal ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_010931287.1\|802156_803053_-	metal ABC transporter permease	NA	NA	NA	NA
WP_010931288.1\|803049_803772_-	metal ABC transporter ATP-binding protein	A0A2R8FG22	Brazilian_cedratvirus	1.1e-11	30.0
WP_019248127.1\|803762_803927_-	hypothetical protein	NA	NA	NA	NA
WP_003807166.1\|804100_804604_+	transcriptional repressor	NA	NA	NA	NA
WP_010931290.1\|804880_805996_+	GTP-binding protein	NA	NA	NA	NA
WP_003807164.1\|806138_806603_+	RNA polymerase-binding protein DksA	NA	NA	NA	NA
WP_010931291.1\|806750_807290_+\|protease	ATP-dependent protease subunit HslV	NA	NA	NA	NA
WP_003807162.1\|807311_808646_+\|protease	ATP-dependent protease ATPase subunit HslU	A0A191ZC11	Erwinia_phage	3.5e-43	29.6
WP_003807161.1\|808659_808965_-	copper-binding protein	NA	NA	NA	NA
WP_023853416.1\|809389_809971_+	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA
WP_005013747.1\|810052_811003_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_005013747.1\|811101_812052_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_003814620.1\|812492_813398_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_023853019.1\|813453_815058_-	gamma-glutamyltransferase family protein	NA	NA	NA	NA
WP_010931270.1\|815314_816820_-	tripartite tricarboxylate transporter permease	NA	NA	NA	NA
WP_003820744.1\|816834_817299_-	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA
WP_005012067.1\|817588_818539_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_162268687.1\|818556_818745_+	hypothetical protein	NA	NA	NA	NA
WP_003820745.1\|818701_819232_+	hypothetical protein	NA	NA	NA	NA
WP_003814611.1\|819231_819543_+	cell division protein ZapA	NA	NA	NA	NA
WP_005012808.1\|819987_820938_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA

DBSCAN-SWA_9

1005153 : 1099190

Bacillus_virus(30.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005012067.1\|1005153_1006104_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_014486100.1\|1006206_1006869_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_019249309.1\|1006963_1007134_+	hypothetical protein	NA	NA	NA	NA
WP_019247599.1\|1007486_1008488_+	amidase	NA	NA	NA	NA
WP_003818702.1\|1008490_1009687_+	CoA transferase	NA	NA	NA	NA
WP_014486098.1\|1009707_1010511_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA
WP_019247598.1\|1010591_1010888_+	hypothetical protein	NA	NA	NA	NA
WP_019247597.1\|1010918_1011482_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_014486097.1\|1011522_1012380_+	ABC transporter permease	NA	NA	NA	NA
WP_003818698.1\|1012387_1013137_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	6.2e-29	33.5
WP_014486096.1\|1013158_1014031_+	polysaccharide deacetylase family protein	NA	NA	NA	NA
WP_014486095.1\|1014059_1014839_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_014486094.1\|1014872_1015670_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_003808978.1\|1018324_1018717_+	hypothetical protein	NA	NA	NA	NA
WP_014486091.1\|1018710_1019571_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
WP_003818691.1\|1019574_1020537_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
WP_014486089.1\|1021313_1022003_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	4.8e-12	28.8
WP_010930208.1\|1022863_1023814_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010931181.1\|1024163_1025033_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_010926062.1\|1025103_1025799_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_010931179.1\|1025788_1026298_+	nucleoside deaminase	NA	NA	NA	NA
WP_010931178.1\|1026294_1027515_+	MFS transporter	NA	NA	NA	NA
WP_010931177.1\|1027462_1028365_-	transcriptional regulator GcvA	NA	NA	NA	NA
WP_023997744.1\|1029251_1030538_+\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_010931176.1\|1030576_1031950_+	amidase	NA	NA	NA	NA
WP_010931175.1\|1031988_1032690_-	riboflavin synthase	NA	NA	NA	NA
WP_010931174.1\|1032988_1033978_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_003809010.1\|1034078_1034540_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
WP_010931173.1\|1034555_1035104_-	cysteine dioxygenase family protein	NA	NA	NA	NA
WP_010931172.1\|1035245_1036721_-	acyl--CoA ligase	Q75ZG1	Hepacivirus	3.0e-35	25.6
WP_010931171.1\|1036826_1037918_+	DUF2817 domain-containing protein	NA	NA	NA	NA
WP_010931170.1\|1037921_1038704_-	ABC transporter permease	NA	NA	NA	NA
WP_010931169.1\|1038713_1039502_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.1e-33	40.0
WP_010931168.1\|1040627_1041062_-	PaaI family thioesterase	NA	NA	NA	NA
WP_010931167.1\|1041058_1042069_-	zinc-binding dehydrogenase	NA	NA	NA	NA
WP_003809025.1\|1042112_1043039_-	VOC family protein	NA	NA	NA	NA
WP_003809026.1\|1043325_1043694_+	DUF861 domain-containing protein	NA	NA	NA	NA
WP_154698394.1\|1043746_1043893_-	hypothetical protein	NA	NA	NA	NA
WP_023853143.1\|1043910_1044861_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010931165.1\|1044905_1047332_+	copper-translocating P-type ATPase	A0A218MNH6	uncultured_virus	1.2e-86	33.8
WP_010931164.1\|1047380_1048073_+	HD domain-containing protein	A0A1D6Y7U0	Golden_Marseillevirus	4.7e-07	29.9
WP_010931163.1\|1048145_1049345_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA
WP_003819549.1\|1049362_1050268_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_010931162.1\|1050383_1051313_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_010931161.1\|1051338_1052685_+	MFS transporter	NA	NA	NA	NA
WP_010931160.1\|1052712_1053462_+	SDR family oxidoreductase	A0A0M4JSW6	Mollivirus	1.2e-11	26.4
WP_010931159.1\|1053475_1054258_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_005012067.1\|1054450_1055401_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010931158.1\|1055462_1056572_-	porin	NA	NA	NA	NA
WP_003815281.1\|1057084_1057921_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	1.6e-33	33.3
WP_023997028.1\|1057990_1058956_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_005012067.1\|1058952_1059903_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_023998107.1\|1059920_1060091_+	hypothetical protein	NA	NA	NA	NA
WP_019247492.1\|1060288_1060831_+	hypothetical protein	NA	NA	NA	NA
WP_005012067.1\|1061866_1062817_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_019247402.1\|1063058_1063427_+	hypothetical protein	NA	NA	NA	NA
WP_019248356.1\|1063472_1064597_+	hypothetical protein	NA	NA	NA	NA
WP_010931156.1\|1065731_1066484_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_010931155.1\|1066575_1067196_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_023852714.1\|1067299_1068250_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010931154.1\|1068246_1070355_-	AsmA family protein	NA	NA	NA	NA
WP_003820814.1\|1070499_1071159_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA
WP_003820813.1\|1071190_1071655_-	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA
WP_019248355.1\|1071930_1072116_+	hypothetical protein	NA	NA	NA	NA
WP_010931153.1\|1072167_1072920_-	DNA-binding protein	NA	NA	NA	NA
WP_010931152.1\|1072926_1074189_-	extracellular solute-binding protein	NA	NA	NA	NA
WP_023852748.1\|1074230_1075469_-\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_003820806.1\|1076546_1077674_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.2e-23	32.3
WP_003814524.1\|1077684_1078512_-	carbohydrate ABC transporter permease	NA	NA	NA	NA
WP_010931150.1\|1078498_1079365_-	sugar ABC transporter permease	NA	NA	NA	NA
WP_010931149.1\|1080731_1081136_-	hypothetical protein	NA	NA	NA	NA
WP_005012808.1\|1081227_1082178_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_155120814.1\|1082195_1082360_+	hypothetical protein	NA	NA	NA	NA
WP_033446288.1\|1082547_1083459_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_003820799.1\|1083473_1084184_+	FadR family transcriptional regulator	NA	NA	NA	NA
WP_010931147.1\|1084180_1085425_+	DUF521 domain-containing protein	NA	NA	NA	NA
WP_003820797.1\|1085426_1085861_+	DUF126 domain-containing protein	NA	NA	NA	NA
WP_003814535.1\|1085889_1086195_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_005012067.1\|1086293_1087244_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_019247277.1\|1087300_1088455_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA
WP_010930176.1\|1088529_1089480_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010931144.1\|1090011_1090809_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_019247918.1\|1090856_1091510_-	ABC transporter permease	NA	NA	NA	NA
WP_003814544.1\|1091466_1092555_-	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	8.7e-32	36.4
WP_003814547.1\|1092719_1094945_-	glycoside hydrolase family 31 protein	NA	NA	NA	NA
WP_023852715.1\|1097222_1098119_+	inositol monophosphatase	NA	NA	NA	NA
WP_162268686.1\|1098072_1098222_-	hypothetical protein	NA	NA	NA	NA
WP_005012067.1\|1098239_1099190_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA

DBSCAN-SWA_10

1129576 : 1200548

uncultured_Mediterranean_phage(25.0%)

transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005012808.1\|1129576_1130527_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010931130.1\|1130583_1131696_+	Ldh family oxidoreductase	NA	NA	NA	NA
WP_005012067.1\|1134079_1135030_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010931129.1\|1135620_1136397_+	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA
WP_003812908.1\|1136514_1136778_-	30S ribosomal protein S20	NA	NA	NA	NA
WP_010931128.1\|1136878_1137883_-	FecR domain-containing protein	NA	NA	NA	NA
WP_010931127.1\|1138083_1139685_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA
WP_010931126.1\|1139710_1140469_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA
WP_010931125.1\|1140560_1141217_-	adenylate kinase	NA	NA	NA	NA
WP_010931124.1\|1141307_1142072_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA
WP_003812895.1\|1142081_1142270_-	Trm112 family protein	NA	NA	NA	NA
WP_010931123.1\|1142325_1143369_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA
WP_010931122.1\|1143365_1143779_-	biopolymer transporter ExbD	NA	NA	NA	NA
WP_003812889.1\|1143775_1144396_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA
WP_005012067.1\|1144676_1145627_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010931120.1\|1145794_1147186_+	exodeoxyribonuclease VII large subunit	A0A1V0SD82	Indivirus	1.4e-29	32.0
WP_010931119.1\|1147258_1147837_+	superoxide dismutase [Fe]	NA	NA	NA	NA
WP_019247560.1\|1147953_1149351_+	chloride channel protein	NA	NA	NA	NA
WP_010931117.1\|1149466_1150672_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA
WP_003820399.1\|1150771_1151290_-	DUF192 domain-containing protein	A0A1B1IUW8	uncultured_Mediterranean_phage	5.1e-14	42.2
WP_003812875.1\|1151384_1151630_-	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	1.3e-20	76.6
WP_003820400.1\|1151857_1152172_+\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	1.2e-10	43.8
WP_010931116.1\|1152261_1157451_+	alpha-2-macroglobulin family protein	NA	NA	NA	NA
WP_010931115.1\|1157447_1159616_+	penicillin-binding protein 1C	NA	NA	NA	NA
WP_010931114.1\|1159671_1161987_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	4.1e-164	41.9
WP_003820402.1\|1161991_1163311_+	PqiA/YebS family transporter subunit	NA	NA	NA	NA
WP_014905522.1\|1163329_1165003_+	MCE family protein	NA	NA	NA	NA
WP_010931111.1\|1165007_1165676_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA
WP_010931110.1\|1165832_1169654_+	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_154698391.1\|1169808_1169967_-	hypothetical protein	NA	NA	NA	NA
WP_010930800.1\|1169984_1170935_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_003812857.1\|1170956_1172102_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_003820410.1\|1172250_1173180_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
WP_003812851.1\|1173176_1174265_+	ABC transporter ATP-binding protein	NA	NA	NA	NA
WP_010931109.1\|1174261_1175065_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	7.9e-14	23.5
WP_003812846.1\|1175061_1175793_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.4e-12	31.0
WP_010931108.1\|1175850_1177140_-	MFS transporter	NA	NA	NA	NA
WP_010931107.1\|1177236_1177839_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_003812839.1\|1182393_1182732_-	P-II family nitrogen regulator	NA	NA	NA	NA
WP_010931105.1\|1183439_1183706_+	accessory factor UbiK family protein	NA	NA	NA	NA
WP_010929591.1\|1185412_1186363_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010931103.1\|1186359_1187691_-	MFS transporter	NA	NA	NA	NA
WP_010931102.1\|1188951_1190952_+	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA
WP_003819722.1\|1190944_1191586_+	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA
WP_003809276.1\|1191582_1191990_+	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA
WP_010931101.1\|1191986_1192787_+	SURF1 family protein	NA	NA	NA	NA
WP_010931100.1\|1192861_1193566_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_010931099.1\|1193597_1194392_+	N-formylglutamate deformylase	NA	NA	NA	NA
WP_005013747.1\|1194388_1195339_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_023995489.1\|1195437_1196388_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_003812014.1\|1196486_1196921_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA
WP_010931098.1\|1197003_1199340_+	heavy metal translocating P-type ATPase	E4ZFI9	Streptococcus_phage	3.2e-124	42.8
WP_010930525.1\|1199531_1200548_+\|transposase	IS110-like element IS1663 family transposase	NA	NA	NA	NA

DBSCAN-SWA_11

1241619 : 1323754

Bacillus_virus(28.57%)

transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010929591.1\|1241619_1242570_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010931074.1\|1242657_1244310_+	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA
WP_010931073.1\|1244320_1245109_+	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA
WP_003813284.1\|1245108_1245579_+	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA
WP_010931072.1\|1245653_1246967_+	phenylacetate--CoA ligase	NA	NA	NA	NA
WP_010931071.1\|1247020_1247626_-	fimbrial major subunit FimX	NA	NA	NA	NA
WP_010927663.1\|1247942_1248893_+\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_010931070.1\|1248889_1249840_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010931069.1\|1250100_1251129_-	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA
WP_010931068.1\|1251208_1252507_-	TRAP transporter large permease	NA	NA	NA	NA
WP_003816847.1\|1252503_1253085_-	TRAP transporter small permease	NA	NA	NA	NA
WP_010931067.1\|1253397_1257444_+	phosphoribosylformylglycinamidine synthase	A9YX36	Burkholderia_phage	6.3e-160	67.4
WP_005012067.1\|1265341_1266292_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010931065.1\|1267431_1267905_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_010931064.1\|1268044_1268665_-	cupin domain-containing protein	NA	NA	NA	NA
WP_010931063.1\|1268800_1269601_+	aldolase	NA	NA	NA	NA
WP_003810897.1\|1269655_1270747_+	TRAP transporter substrate-binding protein DctP	NA	NA	NA	NA
WP_010931062.1\|1270768_1271212_-	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA
WP_010931061.1\|1271240_1271873_-	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA
WP_003810909.1\|1271983_1272400_+\|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
WP_010931060.1\|1272392_1273085_+	DUF2238 domain-containing protein	NA	NA	NA	NA
WP_010931059.1\|1273191_1273566_+	MAPEG family protein	NA	NA	NA	NA
WP_010931058.1\|1273642_1274452_-	IclR family transcriptional regulator	NA	NA	NA	NA
WP_010931057.1\|1274547_1275492_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA
WP_003816577.1\|1275530_1276502_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_003810921.1\|1276592_1277030_-	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA
WP_029443733.1\|1277088_1277970_-	NRDE family protein	NA	NA	NA	NA
WP_010931054.1\|1278973_1279834_+	amidohydrolase	NA	NA	NA	NA
WP_010931053.1\|1279866_1281249_+	FAD-dependent oxidoreductase	A0A2P0ZL82	Lactobacillus_phage	7.9e-30	28.4
WP_010931052.1\|1281245_1282265_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_019247407.1\|1282637_1283132_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_010931051.1\|1283139_1283880_-	IclR family transcriptional regulator	NA	NA	NA	NA
WP_010931050.1\|1283960_1285565_-	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA
WP_010931049.1\|1285604_1286393_-	DeoR family transcriptional regulator	A0A077SK06	Escherichia_phage	2.0e-22	30.4
WP_010931048.1\|1287595_1288684_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	9.7e-15	28.1
WP_010931047.1\|1289564_1290377_+	carbohydrate ABC transporter permease	NA	NA	NA	NA
WP_004568502.1\|1290389_1290698_+	DUF2160 domain-containing protein	NA	NA	NA	NA
WP_010931046.1\|1290815_1292546_+	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_019249399.1\|1292547_1293693_-	hypothetical protein	NA	NA	NA	NA
WP_010931044.1\|1293822_1294491_-	DUF502 domain-containing protein	NA	NA	NA	NA
WP_003810957.1\|1294612_1295080_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_019247521.1\|1295215_1296598_+	D-amino acid dehydrogenase	NA	NA	NA	NA
WP_014486086.1\|1296594_1297719_+	DNA repair exonuclease	NA	NA	NA	NA
WP_010931042.1\|1297715_1300352_+	AAA family ATPase	NA	NA	NA	NA
WP_010931070.1\|1300767_1301718_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010931041.1\|1305464_1306076_-	DUF2239 family protein	NA	NA	NA	NA
WP_003812368.1\|1306298_1307759_+	IMP dehydrogenase	A0A1V0SHK8	Klosneuvirus	1.6e-97	41.3
WP_010931040.1\|1307855_1309448_+	glutamine-hydrolyzing GMP synthase	A0A1V0SH76	Hokovirus	1.0e-17	33.3
WP_019247974.1\|1309801_1310059_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_003816876.1\|1310060_1311401_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA
WP_010931038.1\|1311496_1312186_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_019247976.1\|1312198_1313629_+	MFS transporter	NA	NA	NA	NA
WP_014905903.1\|1315353_1316175_+	IclR family transcriptional regulator	NA	NA	NA	NA
WP_010931036.1\|1316185_1317757_+	amidohydrolase	NA	NA	NA	NA
WP_010931035.1\|1317785_1318763_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_010931034.1\|1318789_1319593_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.7e-30	38.2
WP_010931033.1\|1319589_1320384_+	ABC transporter permease	NA	NA	NA	NA
WP_003816890.1\|1320391_1321627_+	DUF521 domain-containing protein	NA	NA	NA	NA
WP_010931032.1\|1321619_1322054_+	DUF126 domain-containing protein	NA	NA	NA	NA
WP_005013747.1\|1322803_1323754_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA

DBSCAN-SWA_12

1327865 : 1368534

Salmonella_phage(33.33%)

transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005013747.1\|1327865_1328816_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010931029.1\|1328856_1329927_+	FUSC family protein	NA	NA	NA	NA
WP_010931028.1\|1329949_1330828_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_010931027.1\|1330999_1331971_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_010931026.1\|1332133_1332976_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_010931025.1\|1333137_1333818_+	cupin domain-containing protein	NA	NA	NA	NA
WP_010931024.1\|1333811_1334981_+	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_010931023.1\|1334977_1336009_+	alcohol dehydrogenase catalytic domain-containing protein	A0A2K9L339	Tupanvirus	1.8e-26	27.8
WP_010931022.1\|1336052_1337294_+	MFS transporter	NA	NA	NA	NA
WP_010931021.1\|1337328_1338861_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA
WP_010931020.1\|1338941_1339565_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA
WP_010931019.1\|1339595_1340207_+	LysE family translocator	NA	NA	NA	NA
WP_010931018.1\|1340242_1340713_+	DUF1801 domain-containing protein	NA	NA	NA	NA
WP_019248147.1\|1341144_1342149_+	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA
WP_010931017.1\|1342185_1343700_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_010931016.1\|1343703_1344663_+	ABC transporter permease	NA	NA	NA	NA
WP_010931015.1\|1344691_1345495_+	ABC transporter permease	NA	NA	NA	NA
WP_010931014.1\|1345496_1347131_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.9e-15	31.1
WP_010931013.1\|1347214_1348276_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_004567322.1\|1348474_1348744_+	hypothetical protein	NA	NA	NA	NA
WP_010931012.1\|1348747_1349272_+	DNA-binding protein	J9Q7G7	Salmonella_phage	6.5e-09	32.9
WP_010929591.1\|1349687_1350638_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010931011.1\|1350634_1351669_-	metal-dependent hydrolase	NA	NA	NA	NA
WP_003816758.1\|1351777_1352416_+	DedA family protein	NA	NA	NA	NA
WP_019247724.1\|1352710_1352938_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_003820420.1\|1353060_1353774_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_005013747.1\|1354018_1354969_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010931009.1\|1355072_1355354_+	hypothetical protein	NA	NA	NA	NA
WP_010931008.1\|1355468_1356917_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA
WP_005012808.1\|1357027_1357978_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_003816756.1\|1357974_1358424_-	dUTP diphosphatase	S4TNT3	Salmonella_phage	3.7e-45	67.2
WP_010929584.1\|1358618_1359569_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_003812834.1\|1359904_1360102_+	50S ribosomal protein L35	NA	NA	NA	NA
WP_003812832.1\|1360117_1360477_+	50S ribosomal protein L20	NA	NA	NA	NA
WP_010926359.1\|1360551_1361574_+\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2H4UW22	Bodo_saltans_virus	1.0e-26	38.6
WP_010931007.1\|1361586_1364004_+\|tRNA	phenylalanine--tRNA ligase subunit beta	NA	NA	NA	NA
WP_010931006.1\|1364009_1364351_+	integration host factor subunit alpha	A0A0H3UZA0	Geobacillus_virus	2.8e-13	42.2
WP_003812822.1\|1364409_1364820_+	MerR family transcriptional regulator	NA	NA	NA	NA
WP_010931005.1\|1365319_1366411_-	hypothetical protein	NA	NA	NA	NA
WP_010931004.1\|1366594_1367191_+	lipoprotein	NA	NA	NA	NA
WP_004567479.1\|1367290_1367473_-	hypothetical protein	NA	NA	NA	NA
WP_010929591.1\|1367583_1368534_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA

DBSCAN-SWA_13

1448211 : 1500359

Salmonella_phage(25.0%)

transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005013747.1\|1448211_1449162_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_023999730.1\|1449179_1449332_+	hypothetical protein	NA	NA	NA	NA
WP_003814065.1\|1449328_1449682_+	cytochrome c	NA	NA	NA	NA
WP_003814063.1\|1449694_1450057_+	cytochrome c	NA	NA	NA	NA
WP_003814061.1\|1450098_1450524_-	DUF1841 family protein	NA	NA	NA	NA
WP_003814059.1\|1450726_1451983_+	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	1.2e-11	64.8
WP_003814057.1\|1452181_1453162_+	hypothetical protein	NA	NA	NA	NA
WP_005015028.1\|1453311_1454553_+	O-antigen ligase family protein	NA	NA	NA	NA
WP_005013747.1\|1454651_1455602_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_003814052.1\|1455610_1456306_-	two-component system response regulator KdpE	NA	NA	NA	NA
WP_003814050.1\|1459127_1459727_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA
WP_010930950.1\|1459737_1461903_-	potassium-transporting ATPase subunit KdpB	M1HBF8	Paramecium_bursaria_Chlorella_virus	1.2e-24	27.1
WP_010930949.1\|1461926_1463711_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA
WP_017685545.1\|1463710_1463800_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA
WP_003814042.1\|1464494_1464767_+	DUF4212 domain-containing protein	NA	NA	NA	NA
WP_003814040.1\|1464766_1466833_+	cation acetate symporter	NA	NA	NA	NA
WP_010929577.1\|1466829_1467780_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_005012067.1\|1467878_1468829_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_005015014.1\|1468944_1469277_-	multidrug transporter	NA	NA	NA	NA
WP_010929073.1\|1469273_1469960_-	Smr/MutS family protein	NA	NA	NA	NA
WP_010930948.1\|1469946_1470906_-	thioredoxin-disulfide reductase	A0A2I2L5E1	Orpheovirus	3.1e-57	40.2
WP_003814032.1\|1470947_1473308_+	DNA translocase FtsK	S5VNE3	Mycobacterium_phage	7.6e-81	48.0
WP_010930946.1\|1473307_1473940_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA
WP_010930945.1\|1474041_1475382_+	replication-associated recombination protein A	G3MBE0	Bacillus_virus	1.6e-75	38.9
WP_010930944.1\|1475428_1476784_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.6e-83	47.5
WP_170954289.1\|1476909_1477554_-	hypothetical protein	NA	NA	NA	NA
WP_003814024.1\|1477498_1477816_-	virulence factor	NA	NA	NA	NA
WP_003814023.1\|1478088_1478604_-	hypothetical protein	T1SAR8	Salmonella_phage	5.1e-06	44.6
WP_003814022.1\|1478697_1478859_+	hypothetical protein	NA	NA	NA	NA
WP_003814021.1\|1478874_1479630_-	GGDEF domain-containing protein	NA	NA	NA	NA
WP_019247690.1\|1479968_1480175_+	hypothetical protein	NA	NA	NA	NA
WP_003814020.1\|1480182_1480842_-	NAAT family transporter	NA	NA	NA	NA
WP_010930941.1\|1481136_1483341_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA
WP_010930940.1\|1483451_1484675_-	alcaligin siderophore export MFS transporter Bcr	S4TR35	Salmonella_phage	9.8e-24	29.4
WP_003814017.1\|1484797_1485772_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA
WP_005013753.1\|1485839_1487033_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA
WP_003814016.1\|1487047_1487848_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA
WP_010930939.1\|1487844_1489701_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA
WP_003814014.1\|1489697_1490303_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA
WP_003814013.1\|1490321_1491707_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA
WP_003814012.1\|1492432_1493659_+	cation:proton antiporter	NA	NA	NA	NA
WP_003814011.1\|1493747_1494530_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA
WP_005012067.1\|1494628_1495579_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_003814010.1\|1495605_1496379_+	peroxide stress protein YaaA	NA	NA	NA	NA
WP_003814009.1\|1496390_1497632_+	MFS transporter	NA	NA	NA	NA
WP_076879548.1\|1499408_1500359_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA

DBSCAN-SWA_14

1544284 : 1612370

Streptococcus_virus(11.11%)

transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010930416.1\|1544284_1544773_+\|tRNA	Cys-tRNA(Pro) deacylase	NA	NA	NA	NA
WP_019248504.1\|1544890_1545469_+	DJ-1/PfpI family protein	NA	NA	NA	NA
WP_010930418.1\|1545574_1545943_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA
WP_005012067.1\|1546041_1546992_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_023994932.1\|1546998_1548111_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA
WP_010930419.1\|1548797_1550000_+	MFS transporter	NA	NA	NA	NA
WP_004568212.1\|1550035_1550182_+	hypothetical protein	NA	NA	NA	NA
WP_010930420.1\|1550203_1552864_+	PD-(D/E)XK nuclease family protein	NA	NA	NA	NA
WP_010930421.1\|1552876_1556281_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA
WP_023995689.1\|1556948_1559174_+	DNA polymerase III subunit gamma/tau	A0A1U9WR94	Streptococcus_virus	1.2e-43	38.5
WP_010930423.1\|1559220_1559547_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA
WP_010930424.1\|1559597_1560206_+	recombination protein RecR	NA	NA	NA	NA
WP_005013747.1\|1560304_1561255_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010930425.1\|1561324_1562089_-	hypothetical protein	NA	NA	NA	NA
WP_010930426.1\|1562085_1562685_-	hypothetical protein	NA	NA	NA	NA
WP_010930427.1\|1562788_1563640_-	neutral zinc metallopeptidase	A0A1I9SA48	Rhodococcus_phage	7.0e-37	35.3
WP_010928449.1\|1563699_1564326_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA
WP_005012067.1\|1564322_1565273_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_019249265.1\|1565371_1566484_-	DUF1513 domain-containing protein	NA	NA	NA	NA
WP_019248041.1\|1566473_1567475_-	imelysin family protein	NA	NA	NA	NA
WP_019247498.1\|1567580_1569092_-	c-type cytochrome	NA	NA	NA	NA
WP_023853587.1\|1569088_1570393_-	imelysin	NA	NA	NA	NA
WP_010930431.1\|1570504_1571065_-	membrane protein	NA	NA	NA	NA
WP_010930432.1\|1571332_1571887_+	NAD(P)H-dependent oxidoreductase	A0A2P0ZL82	Lactobacillus_phage	1.7e-15	32.0
WP_010930433.1\|1572342_1572558_-	dodecin domain-containing protein	NA	NA	NA	NA
WP_033446228.1\|1572812_1575410_+	DNA mismatch repair protein MutS	A0A1V0SDQ0	Indivirus	1.5e-21	22.6
WP_010930435.1\|1575406_1576594_+	cupin domain-containing protein	NA	NA	NA	NA
WP_019248658.1\|1577252_1577867_+	fimbrial protein	NA	NA	NA	NA
WP_010930437.1\|1577955_1579083_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA
WP_033446216.1\|1579094_1580000_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA
WP_005012067.1\|1580892_1581843_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010930439.1\|1582024_1582777_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA
WP_003811112.1\|1582845_1583505_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA
WP_003811113.1\|1583501_1584230_+	glutamine ABC transporter ATP-binding protein GlnQ	G9BWD6	Planktothrix_phage	3.3e-35	39.3
WP_010930440.1\|1584242_1586522_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	A0A1B1IUF0	uncultured_Mediterranean_phage	5.9e-06	32.1
WP_010930441.1\|1586546_1586750_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA
WP_010930442.1\|1586791_1587424_-	guanylate kinase	A0A218KC48	Bacillus_phage	2.4e-13	33.9
WP_010930443.1\|1587559_1588477_-	c-type cytochrome	NA	NA	NA	NA
WP_010930444.1\|1588473_1589187_-	c-type cytochrome	NA	NA	NA	NA
WP_003811135.1\|1589424_1590195_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_003811137.1\|1590199_1590799_-	C40 family peptidase	A0A0A8WF62	Clostridium_phage	1.4e-20	41.6
WP_003811138.1\|1591043_1592534_+	AMP nucleosidase	NA	NA	NA	NA
WP_010926696.1\|1592592_1592877_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_010930445.1\|1593014_1593170_-	hypothetical protein	NA	NA	NA	NA
WP_003811148.1\|1593442_1594369_-	YicC family protein	NA	NA	NA	NA
WP_003811149.1\|1594505_1595246_+	ribonuclease PH	NA	NA	NA	NA
WP_010930446.1\|1595412_1596789_-	MmgE/PrpD family protein	NA	NA	NA	NA
WP_003811152.1\|1596970_1597876_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_010930448.1\|1599527_1601330_-	EAL domain-containing protein	NA	NA	NA	NA
WP_010930449.1\|1601456_1602098_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA
WP_005012808.1\|1602196_1603147_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010930450.1\|1603168_1604389_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA
WP_003811164.1\|1604574_1605987_+	type I glutamate--ammonia ligase	NA	NA	NA	NA
WP_003811167.1\|1606050_1607118_+	PAS domain-containing protein	Q8QKV7	Ectocarpus_siliculosus_virus	1.1e-05	23.5
WP_010930451.1\|1607117_1608605_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA
WP_010930452.1\|1608614_1609559_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_003811176.1\|1609718_1610417_+	pirin family protein	NA	NA	NA	NA
WP_010930453.1\|1610494_1611400_+	pirin family protein	NA	NA	NA	NA
WP_005012067.1\|1611419_1612370_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA

DBSCAN-SWA_15

1648319 : 1696141

Brazilian_cedratvirus(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005013747.1\|1648319_1649270_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010930486.1\|1649328_1650102_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_014486074.1\|1650094_1651651_+	LTA synthase family protein	NA	NA	NA	NA
WP_005013747.1\|1651647_1652598_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_003810741.1\|1653924_1654527_-	TetR family transcriptional regulator	NA	NA	NA	NA
WP_003810743.1\|1654766_1655468_-	ABC transporter ATP-binding protein	NA	NA	NA	NA
WP_003816696.1\|1655461_1656244_-	ABC transporter ATP-binding protein	A0A2R8FG22	Brazilian_cedratvirus	2.0e-09	25.8
WP_005012808.1\|1656428_1657379_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_005012808.1\|1657477_1658428_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010930483.1\|1658526_1659264_-	TerC family protein	A0A0S4KZH7	Pseudomonas_phage	4.1e-41	46.6
WP_010926609.1\|1659453_1660212_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_010930482.1\|1660258_1661248_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_010930481.1\|1661425_1662394_-	transporter	NA	NA	NA	NA
WP_010930480.1\|1663933_1664902_+	AAA family ATPase	NA	NA	NA	NA
WP_010930479.1\|1664910_1665852_+	DUF58 domain-containing protein	NA	NA	NA	NA
WP_010930478.1\|1666325_1667336_+	VWA domain-containing protein	NA	NA	NA	NA
WP_010930477.1\|1667326_1668841_+	VWA domain-containing protein	NA	NA	NA	NA
WP_010930476.1\|1668837_1670184_+	BatD family protein	NA	NA	NA	NA
WP_010930475.1\|1670186_1671221_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA
WP_023852967.1\|1671270_1672896_+	arylsulfatase	A0A2P0VMN7	Tetraselmis_virus	2.0e-149	52.2
WP_005012067.1\|1673448_1674399_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010930487.1\|1674503_1675451_+	hypothetical protein	NA	NA	NA	NA
WP_019247865.1\|1675504_1677319_-	sensor histidine kinase	NA	NA	NA	NA
WP_010930489.1\|1677311_1677986_-	response regulator transcription factor	NA	NA	NA	NA
WP_023995112.1\|1678115_1681190_+	autotransporter SphB2	NA	NA	NA	NA
WP_019247905.1\|1681203_1681503_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_010930492.1\|1681817_1682441_-	glutathione S-transferase family protein	NA	NA	NA	NA
WP_010930493.1\|1682684_1683554_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA
WP_010930494.1\|1683531_1684476_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_019247909.1\|1684561_1685488_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_019247910.1\|1685600_1686380_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_010930497.1\|1686370_1687567_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA
WP_010930498.1\|1687597_1688548_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA
WP_010930499.1\|1688769_1689459_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_010930500.1\|1689523_1690279_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_010930501.1\|1690330_1691323_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_010930502.1\|1691332_1692286_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_003811538.1\|1692401_1693364_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_019249376.1\|1694765_1695194_+	hypothetical protein	NA	NA	NA	NA
WP_005013747.1\|1695190_1696141_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA

DBSCAN-SWA_16

1937723 : 2007375

Staphylococcus_phage(16.67%)

transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003818515.1\|1937723_1940381_-\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	3.3e-173	39.0
WP_010930709.1\|1940458_1941661_-	MFS transporter	NA	NA	NA	NA
WP_003810260.1\|1941657_1942170_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_019247822.1\|1942292_1942730_-	HU family DNA-binding protein	NA	NA	NA	NA
WP_010931070.1\|1943006_1943957_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_062826579.1\|1944055_1945006_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010930710.1\|1945259_1947065_+	STAS domain-containing protein	A0A2H4J153	uncultured_Caudovirales_phage	2.2e-19	27.5
WP_010930711.1\|1947178_1947346_-	50S ribosomal protein L33	NA	NA	NA	NA
WP_003810297.1\|1947409_1947646_-	50S ribosomal protein L28	NA	NA	NA	NA
WP_010930712.1\|1948014_1949214_-	multidrug effflux MFS transporter	NA	NA	NA	NA
WP_010929591.1\|1950729_1951680_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_003818523.1\|1952131_1953133_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_003810306.1\|1953305_1954163_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA
WP_003810308.1\|1954159_1955422_+	glycine betaine/L-proline ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	6.8e-28	36.6
WP_003818524.1\|1955522_1955897_+	tautomerase family protein	NA	NA	NA	NA
WP_010930713.1\|1955969_1957157_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA
WP_010930714.1\|1957241_1958012_+	spermidine synthase	NA	NA	NA	NA
WP_010930715.1\|1958125_1958890_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_010930716.1\|1958840_1960142_+	malonyl-CoA decarboxylase family protein	NA	NA	NA	NA
WP_010930717.1\|1960138_1960945_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA
WP_003818532.1\|1962689_1963661_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_003818533.1\|1963817_1964330_+	superoxide dismutase family protein	Q9MC02	Salmonella_phage	1.8e-43	52.3
WP_010930718.1\|1964488_1965463_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_010930719.1\|1966463_1967258_+	ABC transporter ATP-binding protein	A0A1V0SE00	Indivirus	5.1e-05	25.7
WP_003818535.1\|1967283_1968090_-	TOBE domain-containing protein	NA	NA	NA	NA
WP_003810329.1\|1968200_1968791_+	DUF4136 domain-containing protein	NA	NA	NA	NA
WP_010930720.1\|1968801_1969980_+	patatin-like phospholipase family protein	NA	NA	NA	NA
WP_010930721.1\|1970082_1970457_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_019248531.1\|1970709_1972041_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_019247651.1\|1972107_1975338_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA
WP_003810344.1\|1976828_1977575_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA
WP_010930724.1\|1977659_1978121_+	holo-ACP synthase	NA	NA	NA	NA
WP_010930725.1\|1978158_1979217_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA
WP_010930726.1\|1979179_1981009_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA
WP_003810356.1\|1981048_1981621_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA
WP_010930727.1\|1983045_1983867_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	A0A2I7SAX1	Vibrio_phage	4.1e-42	37.6
WP_010930728.1\|1984185_1985508_+	isocitrate lyase	NA	NA	NA	NA
WP_010930729.1\|1985867_1986503_+	membrane protein	NA	NA	NA	NA
WP_010930730.1\|1986462_1987413_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010930731.1\|1988283_1989156_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
WP_010930732.1\|1989233_1990373_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_010930733.1\|1990731_1991988_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA
WP_003816691.1\|1991993_1992521_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA
WP_003816690.1\|1992525_1993344_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA
WP_003816687.1\|1993343_1994066_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_010930735.1\|1994087_1994402_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA
WP_010930736.1\|1994419_1995568_+	CoA transferase	NA	NA	NA	NA
WP_010930737.1\|1995598_1996474_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_003816680.1\|1996470_1997790_-	AMP-binding protein	NA	NA	NA	NA
WP_014486081.1\|1997862_1999059_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA
WP_010930739.1\|1999069_2000557_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA
WP_010930740.1\|2003151_2004051_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_023852887.1\|2004188_2005154_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_005015810.1\|2005252_2006203_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_005013747.1\|2006424_2007375_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA

DBSCAN-SWA_17

2018871 : 2069316

Erysipelothrix_phage(16.67%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005013747.1\|2018871_2019822_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_003812172.1\|2020959_2021256_-	hypothetical protein	NA	NA	NA	NA
WP_019247707.1\|2021430_2022783_+	glutathione-disulfide reductase	A0A2K5B2C5	Erysipelothrix_phage	2.9e-45	27.6
WP_010930153.1\|2022925_2023942_-\|transposase	IS110-like element IS1663 family transposase	NA	NA	NA	NA
WP_010930748.1\|2025921_2026935_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA
WP_010930749.1\|2027021_2027927_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_003812179.1\|2028083_2028428_+	exported protein	NA	NA	NA	NA
WP_010930750.1\|2028585_2029044_+	(2Fe-2S)-binding protein	NA	NA	NA	NA
WP_010930751.1\|2029057_2031274_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA
WP_003812183.1\|2031270_2032332_+	XdhC family protein	NA	NA	NA	NA
WP_010930752.1\|2032360_2033335_+	AraC family transcriptional regulator	NA	NA	NA	NA
WP_010930753.1\|2033286_2034105_-	hypothetical protein	A0A1B1INV8	uncultured_Mediterranean_phage	2.3e-16	28.8
WP_003812191.1\|2034117_2034726_-	LON peptidase substrate-binding domain-containing protein	NA	NA	NA	NA
WP_010930754.1\|2034900_2035296_+	VOC family protein	NA	NA	NA	NA
WP_010930755.1\|2035314_2036754_+	MFS transporter	A0A0M3UL24	Mycobacterium_phage	7.4e-55	37.4
WP_003812199.1\|2036782_2037130_+	GFA family protein	NA	NA	NA	NA
WP_010929577.1\|2037148_2038099_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_005012067.1\|2038751_2039702_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_023997035.1\|2039785_2041603_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	2.3e-37	27.4
WP_019247659.1\|2041676_2042324_+	hypothetical protein	NA	NA	NA	NA
WP_010930758.1\|2042336_2043266_-	ZIP family metal transporter	NA	NA	NA	NA
WP_014905663.1\|2043435_2043900_+	hypothetical protein	NA	NA	NA	NA
WP_003816977.1\|2044147_2044828_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_003816975.1\|2044876_2046568_+	STAS domain-containing protein	A0A2H4J153	uncultured_Caudovirales_phage	5.0e-42	27.3
WP_010930760.1\|2046583_2047135_-	SRPBCC family protein	NA	NA	NA	NA
WP_003816971.1\|2047131_2047503_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_010930761.1\|2047615_2048452_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_029443822.1\|2048462_2048987_-	DUF302 domain-containing protein	NA	NA	NA	NA
WP_003812228.1\|2049084_2049264_+	DUF3008 family protein	NA	NA	NA	NA
WP_010930763.1\|2049393_2050368_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_003816964.1\|2050498_2050855_+	DUF1428 domain-containing protein	NA	NA	NA	NA
WP_010930764.1\|2050844_2051720_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA
WP_010930765.1\|2051818_2052703_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_010930766.1\|2052724_2054020_-	DUF445 domain-containing protein	NA	NA	NA	NA
WP_003816959.1\|2054968_2055619_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA
WP_010930767.1\|2055706_2057227_-	aldehyde dehydrogenase	NA	NA	NA	NA
WP_010930768.1\|2057484_2059350_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA
WP_005012067.1\|2060395_2061346_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_005012067.1\|2061444_2062395_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_162272313.1\|2062412_2062553_+	hypothetical protein	NA	NA	NA	NA
WP_010930769.1\|2063367_2063727_-	CidA/LrgA family protein	NA	NA	NA	NA
WP_010930770.1\|2063714_2065151_-	dethiobiotin synthase	NA	NA	NA	NA
WP_010930771.1\|2065147_2065801_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_010930772.1\|2065797_2066991_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA
WP_010930773.1\|2067094_2068369_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	A0A1V0SKB7	Klosneuvirus	9.6e-14	28.9
WP_005012067.1\|2068365_2069316_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA

DBSCAN-SWA_18

2080520 : 2121211

Klosneuvirus(25.0%)

transposase,tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005013747.1\|2080520_2081471_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_005013747.1\|2081569_2082520_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_047122784.1\|2082479_2082893_-	transcriptional regulator	A0A222YXG1	Escherichia_phage	3.8e-36	59.0
WP_003816708.1\|2083177_2083477_+	hypothetical protein	NA	NA	NA	NA
WP_010930783.1\|2083886_2086169_-	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	3.2e-36	30.1
WP_010930784.1\|2086854_2088885_-	DNA primase	A0A0K1LMQ9	Caulobacter_phage	1.0e-65	41.9
WP_006218592.1\|2088904_2089117_-	30S ribosomal protein S21	NA	NA	NA	NA
WP_003810720.1\|2089394_2089934_-	phosphoribosyltransferase	NA	NA	NA	NA
WP_023852902.1\|2090047_2091343_-	adenylosuccinate synthase	A0A160ER07	Powai_lake_megavirus	3.0e-63	33.5
WP_010930786.1\|2091419_2092577_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA
WP_010930787.1\|2092760_2093660_-\|protease	protease modulator HflC	NA	NA	NA	NA
WP_010930788.1\|2093678_2094983_-\|protease	FtsH protease activity modulator HflK	NA	NA	NA	NA
WP_010930789.1\|2094948_2096055_-	GTPase HflX	NA	NA	NA	NA
WP_003810707.1\|2096142_2096379_-	RNA chaperone Hfq	NA	NA	NA	NA
WP_010930790.1\|2096517_2097588_-	histidinol-phosphate transaminase	A0A1X6WGT4	Pacmanvirus	2.5e-15	25.7
WP_003810703.1\|2097591_2098947_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA
WP_003810701.1\|2098973_2100134_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA
WP_010930791.1\|2100136_2100775_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_023995843.1\|2100776_2102063_-\|tRNA	histidine--tRNA ligase	NA	NA	NA	NA
WP_010930793.1\|2102121_2103417_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA
WP_003810693.1\|2103423_2103930_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_004568542.1\|2103926_2105075_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA
WP_003810689.1\|2105102_2105528_-	nucleoside-diphosphate kinase	D2E8E1	Anguillid_herpesvirus	2.1e-21	43.2
WP_010930794.1\|2105850_2108733_+\|tRNA	valine--tRNA ligase	A0A1V0SK04	Klosneuvirus	3.7e-138	37.1
WP_023852900.1\|2108825_2109581_-	MipA/OmpV family protein	NA	NA	NA	NA
WP_010930796.1\|2110346_2111696_+	two-component sensor histidine kinase	NA	NA	NA	NA
WP_076879566.1\|2111794_2112745_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010930048.1\|2112843_2113794_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010930594.1\|2113867_2114341_+	RidA family protein	NA	NA	NA	NA
WP_010930593.1\|2114366_2115575_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA
WP_003816734.1\|2115571_2116345_-\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
WP_014905757.1\|2116344_2116968_-	ribosome maturation factor RimM	NA	NA	NA	NA
WP_010926757.1\|2117133_2117394_-	30S ribosomal protein S16	NA	NA	NA	NA
WP_010930591.1\|2117697_2118279_+	hypothetical protein	NA	NA	NA	NA
WP_004568544.1\|2118345_2118600_-	sulfurtransferase TusA family protein	NA	NA	NA	NA
WP_010930590.1\|2118586_2121211_-\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	1.7e-81	39.4

DBSCAN-SWA_19

2148994 : 2214543

Lake_Baikal_phage(20.0%)

transposase,tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010929577.1\|2148994_2149945_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010930573.1\|2150145_2150955_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA
WP_005013747.1\|2151079_2152030_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010930572.1\|2152026_2152920_-	methylglyoxal synthase	NA	NA	NA	NA
WP_003812452.1\|2153044_2153239_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA
WP_003812453.1\|2153238_2153580_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA
WP_010930571.1\|2153589_2155452_-	Fe-S protein assembly chaperone HscA	A0A0N9QXN8	Chrysochromulina_ericina_virus	3.0e-101	42.4
WP_003812456.1\|2155581_2156094_-	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA
WP_003812458.1\|2156096_2156420_-	iron-sulfur cluster assembly protein IscA	A0A2H4N7N5	Lake_Baikal_phage	6.8e-25	52.8
WP_003812460.1\|2156421_2156832_-	Fe-S cluster assembly scaffold IscU	A0A218MKD1	uncultured_virus	7.5e-53	79.0
WP_010930570.1\|2156869_2158081_-	IscS subfamily cysteine desulfurase	NA	NA	NA	NA
WP_003812463.1\|2158098_2158611_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA
WP_010930569.1\|2158826_2159318_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA
WP_010930568.1\|2159570_2161607_-	excinuclease ABC subunit UvrB	NA	NA	NA	NA
WP_019247244.1\|2161684_2162887_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA
WP_010930566.1\|2163015_2163666_+	transcriptional repressor LexA	A0A2H4JG58	uncultured_Caudovirales_phage	3.3e-10	50.7
WP_005012067.1\|2165223_2166174_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_019247934.1\|2166744_2166957_-	hypothetical protein	NA	NA	NA	NA
WP_019247935.1\|2166974_2167706_-	hypothetical protein	NA	NA	NA	NA
WP_003812478.1\|2167740_2168382_-	CoA transferase subunit B	NA	NA	NA	NA
WP_010930565.1\|2168374_2169043_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA
WP_010930564.1\|2171255_2172032_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_010930563.1\|2172053_2173211_-	thiolase	NA	NA	NA	NA
WP_003812491.1\|2173207_2173639_-	OB-fold domain-containing protein	NA	NA	NA	NA
WP_015063637.1\|2173635_2174439_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA
WP_010930561.1\|2174452_2174854_-	MaoC family dehydratase	NA	NA	NA	NA
WP_010930560.1\|2174920_2175892_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_010930559.1\|2175957_2177181_-	CoA transferase	NA	NA	NA	NA
WP_019247936.1\|2177408_2178359_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_010930557.1\|2178482_2180936_-	endopeptidase La	A0A0R6PGP8	Moraxella_phage	1.5e-220	52.0
WP_010930556.1\|2181124_2182429_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	3.2e-129	53.8
WP_003812508.1\|2182533_2183187_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	A0A223W000	Agrobacterium_phage	6.8e-56	57.5
WP_010930555.1\|2183189_2184500_-	trigger factor	NA	NA	NA	NA
WP_010930554.1\|2184696_2185257_+	TIGR00645 family protein	K4K6D8	Caulobacter_phage	1.0e-23	33.7
WP_010930553.1\|2185368_2185569_-	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	7.4e-14	64.4
WP_003812519.1\|2185914_2186481_-	DUF924 family protein	NA	NA	NA	NA
WP_010930551.1\|2186564_2186768_-	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	1.6e-16	62.1
WP_003812524.1\|2187074_2187395_-	hypothetical protein	NA	NA	NA	NA
WP_003812526.1\|2187436_2187718_-	membrane protein	NA	NA	NA	NA
WP_010930550.1\|2187792_2189049_-	autotransporter Phg	NA	NA	NA	NA
WP_010930549.1\|2189431_2189761_+	DUF4148 domain-containing protein	NA	NA	NA	NA
WP_003812536.1\|2191331_2192153_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA
WP_010930548.1\|2192152_2193292_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA
WP_019247938.1\|2193298_2194195_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA
WP_010930546.1\|2194191_2196117_+	ATP-binding cassette domain-containing protein	A0A2K9L0W2	Tupanvirus	1.1e-66	31.8
WP_010926400.1\|2196476_2199089_+	TonB-dependent receptor	NA	NA	NA	NA
WP_003812546.1\|2199141_2201442_-	UvrD-helicase domain-containing protein	A7KV33	Bacillus_phage	9.9e-110	35.9
WP_003812548.1\|2201438_2202647_-	fatty acid desaturase	NA	NA	NA	NA
WP_010930545.1\|2202908_2203283_+	hypothetical protein	NA	NA	NA	NA
WP_005012067.1\|2203279_2204230_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_076879626.1\|2204328_2206323_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	4.4e-21	33.3
WP_010930543.1\|2206382_2207348_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA
WP_010930542.1\|2207337_2210199_+\|tRNA	isoleucine--tRNA ligase	A0A1V0SJ93	Klosneuvirus	1.0e-71	25.5
WP_010930541.1\|2210201_2210708_+	lipoprotein signal peptidase	NA	NA	NA	NA
WP_010930540.1\|2210812_2212021_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	Q9HH70	Methanothermobacter_phage	3.8e-36	30.0
WP_033446178.1\|2212022_2212961_-	membrane protein	NA	NA	NA	NA
WP_010930538.1\|2213122_2213596_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
WP_010929584.1\|2213592_2214543_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA

DBSCAN-SWA_20

2508185 : 2566429

Planktothrix_phage(28.57%)

transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005012067.1\|2508185_2509136_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010930388.1\|2509615_2510272_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA
WP_010930387.1\|2510286_2511954_-	TRAP transporter large permease subunit	NA	NA	NA	NA
WP_010930386.1\|2511956_2512586_-	TRAP transporter small permease subunit	NA	NA	NA	NA
WP_014486072.1\|2512797_2513892_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA
WP_010930384.1\|2514036_2514849_-\|tRNA	tRNA pseudouridine(38-40) synthase TruA	NA	NA	NA	NA
WP_023853502.1\|2514852_2516556_-	FimV N-terminal domain protein	NA	NA	NA	NA
WP_010930382.1\|2516606_2517737_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_010930381.1\|2517923_2519000_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA
WP_010930380.1\|2519081_2519732_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA
WP_010930379.1\|2519746_2521150_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA
WP_004567445.1\|2521433_2522252_-	substrate-binding domain-containing protein	NA	NA	NA	NA
WP_010930378.1\|2522248_2522953_-	phosphate ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.6e-13	30.0
WP_010930377.1\|2523852_2524968_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_004567447.1\|2525001_2525376_-	hypothetical protein	NA	NA	NA	NA
WP_010930376.1\|2525398_2526556_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA
WP_003812666.1\|2526568_2526802_-	lipoprotein	NA	NA	NA	NA
WP_019247523.1\|2527436_2530406_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA
WP_023853518.1\|2530420_2530630_-	hypothetical protein	NA	NA	NA	NA
WP_019248667.1\|2530781_2531411_-	molecular chaperone TorD family protein	NA	NA	NA	NA
WP_010930373.1\|2531407_2533498_-	4Fe-4S binding protein	NA	NA	NA	NA
WP_010930372.1\|2533521_2534202_-	DUF3306 domain-containing protein	NA	NA	NA	NA
WP_003820494.1\|2534198_2534759_-	DUF3305 domain-containing protein	NA	NA	NA	NA
WP_004567450.1\|2534765_2535863_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA
WP_010930371.1\|2536015_2536609_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA
WP_010930370.1\|2536605_2537898_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA
WP_003812685.1\|2537911_2538454_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA
WP_010930369.1\|2538463_2539300_-	M48 family metallopeptidase	NA	NA	NA	NA
WP_003820487.1\|2539333_2540395_-	chorismate synthase	A0A291AU41	Pandoravirus	2.9e-80	42.8
WP_019247210.1\|2540436_2541489_-	EAL domain-containing protein	NA	NA	NA	NA
WP_019247209.1\|2541504_2541807_-	hypothetical protein	NA	NA	NA	NA
WP_005012808.1\|2541948_2542899_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_162268680.1\|2542916_2543081_+	hypothetical protein	NA	NA	NA	NA
WP_010930368.1\|2543077_2544772_+	iron ABC transporter permease	NA	NA	NA	NA
WP_003809599.1\|2544768_2545854_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	6.4e-27	37.7
WP_010930367.1\|2545901_2546801_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_003809593.1\|2546811_2547456_+	histidine phosphatase family protein	NA	NA	NA	NA
WP_010930366.1\|2548477_2551720_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA
WP_023852833.1\|2551730_2552885_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	R4TGJ8	Halovirus	3.3e-53	35.4
WP_010930364.1\|2553111_2554074_+	transaldolase	H6WFR1	Cyanophage	7.5e-11	29.2
WP_076879624.1\|2554172_2555123_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010930363.1\|2555221_2556172_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010930362.1\|2556181_2556871_-	VIT family protein	NA	NA	NA	NA
WP_003811741.1\|2556930_2557368_-	PaaI family thioesterase	NA	NA	NA	NA
WP_003811743.1\|2557413_2558307_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA
WP_003811746.1\|2558354_2559527_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA
WP_003811748.1\|2559523_2560678_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA
WP_003811750.1\|2560874_2561225_-	RnfH family protein	NA	NA	NA	NA
WP_003811752.1\|2561214_2561649_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA
WP_010930800.1\|2561665_2562616_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_003811754.1\|2562763_2563231_+	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	6.2e-27	45.1
WP_010930360.1\|2563211_2564369_-	GGDEF domain-containing protein	A0A127AWB9	Bacillus_phage	2.3e-14	36.2
WP_003811759.1\|2564434_2565361_-	paraslipin	NA	NA	NA	NA
WP_005012067.1\|2565478_2566429_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA

DBSCAN-SWA_21

2608708 : 2675190

uncultured_Caudovirales_phage(40.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005012067.1\|2608708_2609659_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_003811850.1\|2610028_2610601_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA
WP_003811852.1\|2610603_2611614_+	flagellar motor switch protein FliM	NA	NA	NA	NA
WP_010930335.1\|2611606_2612107_+	flagellar motor switch protein FliN	NA	NA	NA	NA
WP_003811855.1\|2612117_2612459_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA
WP_015041547.1\|2612470_2613262_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA
WP_003811859.1\|2613278_2613548_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA
WP_010930333.1\|2613570_2614359_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA
WP_010929632.1\|2614405_2615422_-\|transposase	IS110-like element IS1663 family transposase	NA	NA	NA	NA
WP_014486070.1\|2615620_2617063_-	PAS domain-containing protein	A0A1B0V854	Salmonella_phage	1.0e-35	41.8
WP_010930332.1\|2617241_2618861_-	Tar ligand binding domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	1.5e-08	45.3
WP_010930331.1\|2618981_2620802_-	Tar ligand binding domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	6.4e-11	52.6
WP_010930330.1\|2620880_2622413_-	flagellar hook-associated protein FlgL	NA	NA	NA	NA
WP_010930329.1\|2622446_2624093_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA
WP_010930328.1\|2624162_2625185_-	flagellar assembly peptidoglycan hydrolase FlgJ	A0A088F6W1	Sulfitobacter_phage	1.9e-12	31.4
WP_010930327.1\|2625202_2626336_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA
WP_010930326.1\|2626338_2627028_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA
WP_010930325.1\|2627027_2627813_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA
WP_003817181.1\|2627856_2628621_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA
WP_003817180.1\|2628659_2630081_-	flagellar hook-basal body complex protein	NA	NA	NA	NA
WP_010930324.1\|2630146_2630851_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA
WP_003817176.1\|2630898_2631318_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA
WP_010930323.1\|2631330_2631738_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA
WP_010930322.1\|2631921_2632632_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA
WP_003817172.1\|2632758_2633049_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA
WP_003817170.1\|2633066_2633549_+	flagellar protein FlgN	NA	NA	NA	NA
WP_010930321.1\|2638054_2639209_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA
WP_010931363.1\|2639514_2640531_+\|transposase	IS110-like element IS1663 family transposase	NA	NA	NA	NA
WP_010930319.1\|2640777_2641566_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_003812020.1\|2641632_2642313_+	amino acid ABC transporter permease	NA	NA	NA	NA
WP_003812022.1\|2642309_2643080_+	amino acid ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	9.8e-30	39.1
WP_010930208.1\|2643178_2644129_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_003811401.1\|2644184_2645102_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA
WP_003811400.1\|2645112_2646291_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA
WP_010930318.1\|2646310_2647306_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_003811396.1\|2648894_2649503_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA
WP_003811393.1\|2649490_2650531_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_003811391.1\|2650548_2651511_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_003811389.1\|2651507_2652701_-	CoA transferase	NA	NA	NA	NA
WP_010930317.1\|2652697_2653495_-	citryl-CoA lyase	NA	NA	NA	NA
WP_014486069.1\|2653520_2654507_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_010930316.1\|2654525_2656565_-	acetate--CoA ligase family protein	NA	NA	NA	NA
WP_010930315.1\|2656766_2657447_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_010930314.1\|2657460_2658372_-	CoA ester lyase	NA	NA	NA	NA
WP_003811381.1\|2658368_2658947_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA
WP_010930313.1\|2659085_2659991_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_010930312.1\|2659998_2663418_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA
WP_010930311.1\|2663405_2666006_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA
WP_003811375.1\|2666961_2667594_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_003811372.1\|2667987_2668746_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA
WP_003811370.1\|2668742_2669945_+	cardiolipin synthase ClsB	NA	NA	NA	NA
WP_010930208.1\|2670132_2671083_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010930310.1\|2671990_2673136_+	DUF3182 family protein	NA	NA	NA	NA
WP_019247449.1\|2673122_2673878_+	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_003811361.1\|2673994_2674174_+	hypothetical protein	NA	NA	NA	NA
WP_010930208.1\|2674239_2675190_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA

DBSCAN-SWA_22

2874578 : 2947901

Catovirus(22.22%)

transposase,tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010930211.1\|2874578_2875934_-\|tRNA	tryptophan--tRNA ligase	NA	NA	NA	NA
WP_003813618.1\|2877412_2878135_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_010930207.1\|2878189_2879173_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_005012067.1\|2879302_2880253_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_003813621.1\|2880249_2881152_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_010930206.1\|2881239_2881998_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_023853245.1\|2882010_2883102_-	cell division protein ZapE	NA	NA	NA	NA
WP_003813626.1\|2883199_2884627_-	dihydrolipoyl dehydrogenase	A0A2K5B2C5	Erysipelothrix_phage	2.1e-41	28.1
WP_010930204.1\|2884856_2886071_-	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA
WP_003813631.1\|2886116_2888987_-	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA
WP_010930202.1\|2891397_2891886_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
WP_010930201.1\|2892011_2894708_+	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA
WP_010930200.1\|2894862_2897145_+	NADP-dependent malic enzyme	NA	NA	NA	NA
WP_019248935.1\|2897316_2897940_+	serotype 2 fimbrial subunit	NA	NA	NA	NA
WP_010930198.1\|2898038_2898989_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_003812405.1\|2899035_2899590_-	transcription elongation factor GreB	NA	NA	NA	NA
WP_003816844.1\|2899657_2900503_-	PHP domain-containing protein	NA	NA	NA	NA
WP_019248398.1\|2900572_2901541_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_023995083.1\|2901540_2902404_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_010930196.1\|2905236_2909163_-	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA
WP_010930194.1\|2909898_2913129_-	autotransporter SphB3	NA	NA	NA	NA
WP_010928340.1\|2913410_2914238_-	TatD family hydrolase	NA	NA	NA	NA
WP_003812422.1\|2914271_2914967_-	lipoprotein-releasing ABC transporter ATP-binding protein LolD	G9BWD6	Planktothrix_phage	7.0e-35	38.6
WP_019247537.1\|2914959_2916240_-	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA
WP_010930192.1\|2916249_2917227_+	hypothetical protein	NA	NA	NA	NA
WP_010930191.1\|2917208_2918909_+	single-stranded-DNA-specific exonuclease RecJ	A7KV88	Bacillus_phage	1.3e-50	28.3
WP_010926448.1\|2919011_2920115_+	peptide chain release factor 2	NA	NA	NA	NA
WP_010926447.1\|2920145_2920901_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_010930190.1\|2920907_2922428_+\|tRNA	lysine--tRNA ligase	A0A1V0SAC0	Catovirus	1.2e-82	36.0
WP_010930189.1\|2922470_2922773_+	membrane protein	NA	NA	NA	NA
WP_003812436.1\|2922769_2923402_-	TetR family transcriptional regulator	NA	NA	NA	NA
WP_010930188.1\|2923480_2925346_-	long-chain fatty acid--CoA ligase	A0A1V0SBX8	Catovirus	9.3e-50	23.3
WP_020699602.1\|2925342_2926137_-	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	1.2e-11	23.3
WP_010930186.1\|2926165_2927281_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_010930185.1\|2928185_2929064_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
WP_010930184.1\|2929063_2929888_-	ABC transporter ATP-binding protein	A0A2R8FG22	Brazilian_cedratvirus	1.0e-08	22.7
WP_010929591.1\|2930055_2931006_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010930183.1\|2931218_2934068_+	EAL domain-containing protein	NA	NA	NA	NA
WP_010930182.1\|2934049_2934778_-	response regulator transcription factor	NA	NA	NA	NA
WP_019248549.1\|2934918_2936382_-	YdiU family protein	A0A075BSJ0	Microcystis_phage	1.7e-43	32.5
WP_010930180.1\|2936378_2936750_-	DUF2069 domain-containing protein	NA	NA	NA	NA
WP_003812701.1\|2936767_2938081_+	YihY family inner membrane protein	NA	NA	NA	NA
WP_003812703.1\|2938117_2938576_+	CBS domain-containing protein	NA	NA	NA	NA
WP_155120815.1\|2938530_2938671_-	hypothetical protein	NA	NA	NA	NA
WP_005012067.1\|2938688_2939639_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010930178.1\|2939635_2940649_-\|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	NA	NA	NA	NA
WP_003812707.1\|2940788_2941775_+	homoserine kinase	NA	NA	NA	NA
WP_161633091.1\|2942133_2942841_-	DUF192 domain-containing protein	NA	NA	NA	NA
WP_005012067.1\|2943421_2944372_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_003809618.1\|2944523_2945126_-	YhbY family RNA-binding protein	NA	NA	NA	NA
WP_010930175.1\|2945144_2945777_+	RlmE family RNA methyltransferase	NA	NA	NA	NA
WP_162096758.1\|2945821_2946073_-	hypothetical protein	NA	NA	NA	NA
WP_010930174.1\|2946014_2947901_+\|protease	ATP-dependent zinc metalloprotease FtsH	M4QMW8	Micromonas_pusilla_virus	1.4e-109	41.5

DBSCAN-SWA_23

2959626 : 3009239

uncultured_Mediterranean_phage(50.0%)

transposase,holin,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005013747.1\|2959626_2960577_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_003809441.1\|2960603_2961068_-	barstar family protein	NA	NA	NA	NA
WP_014486065.1\|2962274_2964563_-	NADP-dependent malic enzyme	NA	NA	NA	NA
WP_010930165.1\|2964679_2965552_-	hypothetical protein	NA	NA	NA	NA
WP_010930164.1\|2965594_2966749_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA
WP_010930163.1\|2966783_2967614_-	lytic transglycosylase domain-containing protein	NA	NA	NA	NA
WP_023853525.1\|2967697_2969242_+	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA
WP_010930161.1\|2969284_2969644_-	hypothetical protein	NA	NA	NA	NA
WP_003819794.1\|2969645_2970059_-\|holin	phage holin family protein	NA	NA	NA	NA
WP_003809432.1\|2970099_2970417_-	DUF883 domain-containing protein	NA	NA	NA	NA
WP_003809431.1\|2970501_2971218_-	hypothetical protein	NA	NA	NA	NA
WP_010930160.1\|2971481_2972903_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA
WP_019248433.1\|2972969_2975717_-	pertactin autotransporter	NA	NA	NA	NA
WP_023853536.1\|2976049_2977066_-\|transposase	IS110-like element IS1663 family transposase	NA	NA	NA	NA
WP_010930157.1\|2977401_2978043_-	uracil phosphoribosyltransferase	NA	NA	NA	NA
WP_003809423.1\|2978133_2979570_-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA
WP_023853534.1\|2979727_2980801_+\|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	NA	NA	NA	NA
WP_010930155.1\|2980797_2981934_+\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	1.9e-85	44.4
WP_003809416.1\|2982078_2982423_+	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	1.0e-10	40.4
WP_010930154.1\|2982489_2984370_+	protein translocase subunit SecD	NA	NA	NA	NA
WP_003809411.1\|2984419_2985355_+	protein translocase subunit SecF	A0A1B1IVP7	uncultured_Mediterranean_phage	3.0e-41	35.5
WP_010931363.1\|2985687_2986704_+\|transposase	IS110-like element IS1663 family transposase	NA	NA	NA	NA
WP_015041211.1\|2987641_2989069_+\|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	NA	NA	NA	NA
WP_010930151.1\|2989065_2990088_+	PhoH family protein	A0A0S0MVD6	Pseudomonas_phage	8.7e-50	45.4
WP_003809396.1\|2990077_2990551_+	rRNA maturation RNase YbeY	NA	NA	NA	NA
WP_010930149.1\|2990691_2991579_+	CBS domain-containing protein	NA	NA	NA	NA
WP_014486064.1\|2991575_2993219_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA
WP_010930148.1\|2993215_2994265_-	aldo/keto reductase	NA	NA	NA	NA
WP_010931363.1\|2995053_2996070_+\|transposase	IS110-like element IS1663 family transposase	NA	NA	NA	NA
WP_003817162.1\|2996169_2996802_-	protein phosphatase CheZ	NA	NA	NA	NA
WP_003811911.1\|2996810_2997200_-	chemotaxis response regulator CheY	Q56AR1	Bacillus_thuringiensis_phage	5.7e-10	33.3
WP_010930146.1\|2997252_2998305_-	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA
WP_010930145.1\|2999168_3000875_-	Tar ligand binding domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	1.4e-12	41.7
WP_003811919.1\|3000948_3001449_-	chemotaxis protein CheW	NA	NA	NA	NA
WP_010930144.1\|3001463_3003521_-	chemotaxis protein CheA	NA	NA	NA	NA
WP_019247393.1\|3003547_3003841_-	response regulator	NA	NA	NA	NA
WP_003817154.1\|3003942_3004890_-	flagellar motor protein MotB	NA	NA	NA	NA
WP_003811927.1\|3004902_3005778_-	flagellar motor stator protein MotA	NA	NA	NA	NA
WP_003811929.1\|3005898_3006459_-	flagellar transcriptional regulator FlhC	NA	NA	NA	NA
WP_010930143.1\|3006493_3006817_-	flagellar transcriptional regulator FlhD	NA	NA	NA	NA
WP_003811933.1\|3007252_3007990_+	RNA polymerase sigma factor FliA	NA	NA	NA	NA
WP_005012067.1\|3008288_3009239_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA

DBSCAN-SWA_24

3030190 : 3102684

Bacillus_virus(16.67%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010929584.1\|3030190_3031141_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_003817151.1\|3031183_3032359_+	FliC/FljB family flagellin	NA	NA	NA	NA
WP_010930129.1\|3032580_3034371_-	dihydrolipoyl dehydrogenase	A0A2K5B2C5	Erysipelothrix_phage	2.4e-39	25.2
WP_010930128.1\|3034383_3036045_-	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA
WP_010930127.1\|3036057_3038763_-	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA
WP_003817147.1\|3039055_3040810_+	PAS domain S-box protein	NA	NA	NA	NA
WP_010930126.1\|3040806_3041433_+	response regulator transcription factor	NA	NA	NA	NA
WP_003811948.1\|3041429_3042281_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	2.1e-33	39.8
WP_019248379.1\|3042356_3044471_+	M3 family metallopeptidase	NA	NA	NA	NA
WP_010930124.1\|3044657_3045272_+	SCO family protein	NA	NA	NA	NA
WP_010930123.1\|3045417_3045669_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA
WP_014486063.1\|3045738_3047121_-	efflux transporter outer membrane subunit	NA	NA	NA	NA
WP_010930121.1\|3047117_3050297_-	efflux RND transporter permease subunit	NA	NA	NA	NA
WP_029443805.1\|3051104_3052022_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_010930119.1\|3052073_3052805_-	rRNA pseudouridine synthase	NA	NA	NA	NA
WP_010926548.1\|3052864_3053437_+	chorismate lyase	NA	NA	NA	NA
WP_010929632.1\|3054945_3055962_+\|transposase	IS110-like element IS1663 family transposase	NA	NA	NA	NA
WP_010930118.1\|3056099_3057149_-	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA
WP_005012067.1\|3057253_3058204_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_003813314.1\|3058299_3059025_-	CoA pyrophosphatase	NA	NA	NA	NA
WP_003813315.1\|3059235_3059616_-	50S ribosomal protein L19	NA	NA	NA	NA
WP_014905652.1\|3059921_3060794_+	EamA family transporter	NA	NA	NA	NA
WP_023852686.1\|3060801_3061182_-	hypothetical protein	NA	NA	NA	NA
WP_023852693.1\|3061335_3062610_-	PA0069 family radical SAM protein	NA	NA	NA	NA
WP_010930113.1\|3064097_3065006_-	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA
WP_010930112.1\|3065803_3066868_-	sulfate ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	3.8e-24	30.3
WP_170954292.1\|3068704_3069706_-	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_003813333.1\|3069928_3070570_-	peroxiredoxin	NA	NA	NA	NA
WP_003821527.1\|3070652_3072479_-	acyl-CoA dehydrogenase	NA	NA	NA	NA
WP_010930111.1\|3072722_3073652_-	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA
WP_010930110.1\|3073651_3074401_-	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA
WP_003821521.1\|3074472_3075387_-	histone deacetylase family protein	A0A2K9KZC4	Tupanvirus	9.8e-45	34.7
WP_010930108.1\|3075406_3076552_+	lytic murein transglycosylase B	NA	NA	NA	NA
WP_014486062.1\|3076612_3077524_-	cysteine synthase CysM	A0A1X9I5K7	Streptococcus_phage	8.0e-47	38.8
WP_005012067.1\|3077604_3078555_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_033446303.1\|3078653_3079238_-	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA
WP_003821513.1\|3079272_3080262_-	ADP-glyceromanno-heptose 6-epimerase	E3SJ87	Synechococcus_phage	2.2e-26	34.4
WP_010930105.1\|3080258_3081200_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	A0A2H4N7X4	Lake_Baikal_phage	1.5e-16	28.1
WP_010930104.1\|3081196_3082417_-	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA
WP_010930103.1\|3082459_3082774_-	DUF1049 domain-containing protein	NA	NA	NA	NA
WP_010930102.1\|3082965_3083325_-	integration host factor subunit beta	NA	NA	NA	NA
WP_010930101.1\|3083326_3085042_-	30S ribosomal protein S1	NA	NA	NA	NA
WP_010930100.1\|3085229_3085901_-	(d)CMP kinase	NA	NA	NA	NA
WP_010930099.1\|3085915_3087244_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA
WP_010930098.1\|3087240_3088140_-	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA
WP_010930097.1\|3088226_3089312_-	prephenate dehydratase	NA	NA	NA	NA
WP_010930096.1\|3089304_3090438_-	3-phosphoserine/phosphohydroxythreonine transaminase	M1Q1P2	Streptococcus_phage	6.4e-78	44.0
WP_010930095.1\|3090437_3093119_-	DNA gyrase subunit A	G3M9Z5	Bacillus_virus	3.2e-104	33.5
WP_010930094.1\|3093489_3094071_+	OmpA family protein	NA	NA	NA	NA
WP_010930093.1\|3094196_3094922_+	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA
WP_010930092.1\|3094918_3095596_+	HAD-IA family hydrolase	NA	NA	NA	NA
WP_010930091.1\|3095811_3096993_+	MFS transporter	NA	NA	NA	NA
WP_010930090.1\|3097765_3097948_+	type II toxin-antitoxin system HicA family toxin	A0A1L2JY37	Aeribacillus_phage	3.7e-12	56.1
WP_005012808.1\|3097977_3098928_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_004566317.1\|3099057_3099450_+	type II toxin-antitoxin system HicB family antitoxin	A0A0R6PJ17	Moraxella_phage	4.8e-25	45.0
WP_003821497.1\|3099726_3100638_-	LysR family transcriptional regulator	Q6JIH3	Burkholderia_virus	4.4e-05	27.6
WP_010930088.1\|3100762_3101737_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_005012067.1\|3101733_3102684_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA

DBSCAN-SWA_25

3116191 : 3169709

Bacillus_phage(33.33%)

transposase,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010930066.1\|3116191_3117142_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_003810839.1\|3117254_3117506_-	hypothetical protein	NA	NA	NA	NA
WP_003810835.1\|3118011_3119130_-	mannose-6-phosphate isomerase	NA	NA	NA	NA
WP_003810832.1\|3119249_3119462_-	hypothetical protein	NA	NA	NA	NA
WP_010930064.1\|3119621_3119843_-	hypothetical protein	NA	NA	NA	NA
WP_010929591.1\|3119895_3120846_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010930062.1\|3122022_3123393_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA
WP_010930061.1\|3123425_3124217_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_010930060.1\|3124229_3125285_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_019247557.1\|3125310_3126186_-	amidohydrolase	NA	NA	NA	NA
WP_023852826.1\|3126291_3126540_-	hypothetical protein	NA	NA	NA	NA
WP_003819989.1\|3126574_3128029_-	carboxylase	NA	NA	NA	NA
WP_004568140.1\|3128025_3128547_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA
WP_010930057.1\|3128575_3129928_-	MmgE/PrpD family protein	NA	NA	NA	NA
WP_029444137.1\|3130151_3133040_-	HD domain-containing protein	NA	NA	NA	NA
WP_010930056.1\|3135184_3136486_+	phospholipase A	NA	NA	NA	NA
WP_010930055.1\|3136500_3137217_-	flagellar brake protein	NA	NA	NA	NA
WP_010930054.1\|3137498_3138179_+	DUF3313 domain-containing protein	NA	NA	NA	NA
WP_003809770.1\|3138190_3138358_-	hypothetical protein	NA	NA	NA	NA
WP_023852837.1\|3138466_3138613_-	hypothetical protein	NA	NA	NA	NA
WP_010930052.1\|3138706_3139366_-	thiopurine S-methyltransferase	NA	NA	NA	NA
WP_010930051.1\|3139764_3141597_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	1.3e-27	26.4
WP_005012067.1\|3141593_3142544_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_003814007.1\|3143707_3145423_+	acetolactate synthase 3 catalytic subunit	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	3.1e-60	30.3
WP_003814006.1\|3145433_3145925_+	acetolactate synthase small subunit	NA	NA	NA	NA
WP_010930015.1\|3145997_3147014_+	ketol-acid reductoisomerase	NA	NA	NA	NA
WP_003814004.1\|3147181_3147961_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA
WP_003814003.1\|3147979_3148507_-	lipoprotein	NA	NA	NA	NA
WP_003814002.1\|3148800_3149070_+	30S ribosomal protein S15	NA	NA	NA	NA
WP_003821234.1\|3149160_3151320_+	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA
WP_003814000.1\|3151440_3152160_+	lipoprotein	NA	NA	NA	NA
WP_005013747.1\|3152156_3153107_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_003813999.1\|3153247_3154465_+	threonine ammonia-lyase	NA	NA	NA	NA
WP_010930016.1\|3154458_3155070_-	PIN domain-containing protein	K4HZX4	Acidithiobacillus_phage	3.3e-12	32.5
WP_003813997.1\|3155703_3156681_+	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA
WP_003813996.1\|3156824_3157571_+	triose-phosphate isomerase	NA	NA	NA	NA
WP_010930017.1\|3157592_3158039_+	preprotein translocase subunit SecG	NA	NA	NA	NA
WP_010930018.1\|3158826_3161058_+\|holin	choline BCCT transporter BetT	NA	NA	NA	NA
WP_003813993.1\|3161080_3161881_-	IclR family transcriptional regulator	NA	NA	NA	NA
WP_003813992.1\|3162162_3163395_+	methylaspartate ammonia-lyase	NA	NA	NA	NA
WP_003813991.1\|3163505_3164495_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_010930019.1\|3164525_3165914_+	MmgE/PrpD family protein	NA	NA	NA	NA
WP_003813988.1\|3167512_3168496_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_023994644.1\|3168692_3169709_+\|transposase	IS110-like element IS1663 family transposase	NA	NA	NA	NA

DBSCAN-SWA_26

3234167 : 3307329

Klosneuvirus(16.67%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041337087.1\|3234167_3235118_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_003813068.1\|3235114_3236134_-	class 1 fructose-bisphosphatase	A0A1V0SKX4	Klosneuvirus	1.5e-49	35.7
WP_010930049.1\|3236143_3238852_-	aminopeptidase N	A0A0P0IY26	Acinetobacter_phage	2.8e-15	24.0
WP_010930050.1\|3238999_3239656_+	DUF4136 domain-containing protein	NA	NA	NA	NA
WP_005013747.1\|3239754_3240705_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_023998705.1\|3240852_3241746_+	mechanosensitive ion channel family protein	NA	NA	NA	NA
WP_010930013.1\|3241945_3243640_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA
WP_010930012.1\|3243674_3244601_+	VOC family protein	NA	NA	NA	NA
WP_010930011.1\|3244669_3245767_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_003818996.1\|3245785_3246649_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	9.6e-34	38.9
WP_010930010.1\|3246660_3247443_+	ABC transporter permease	NA	NA	NA	NA
WP_004566042.1\|3247439_3248558_+	DUF2817 domain-containing protein	NA	NA	NA	NA
WP_010930009.1\|3248554_3250087_+	acyl--CoA ligase	NA	NA	NA	NA
WP_003818991.1\|3250127_3251135_+	zinc-binding dehydrogenase	NA	NA	NA	NA
WP_023999677.1\|3251279_3252002_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_010930007.1\|3252017_3253040_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA
WP_010930006.1\|3253356_3254091_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_010930005.1\|3254175_3255921_+	acetolactate synthase	NA	NA	NA	NA
WP_010930004.1\|3255917_3256670_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_010930003.1\|3256714_3257671_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_003818983.1\|3257759_3258326_+	membrane protein	NA	NA	NA	NA
WP_010930002.1\|3258333_3259194_-	D-amino acid aminotransferase	NA	NA	NA	NA
WP_020699739.1\|3259223_3259952_-	amino acid ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.4e-32	42.4
WP_003807497.1\|3259983_3260667_-	ABC transporter permease subunit	NA	NA	NA	NA
WP_010930000.1\|3261504_3262419_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_010929999.1\|3262483_3263392_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_010929998.1\|3263482_3264907_-	TolC family protein	NA	NA	NA	NA
WP_010929997.1\|3264908_3266231_-	cyclolysin T1SS periplasmic adaptor subunit CyaD	NA	NA	NA	NA
WP_010929996.1\|3266227_3268366_-	cyclolysin T1SS permease/ATPase CyaB	W8CYL7	Bacillus_phage	2.7e-45	29.2
WP_010929995.1\|3268443_3273564_-	bifunctional adenylate cyclase toxin/hemolysin CyaA	NA	NA	NA	NA
WP_153302771.1\|3273664_3273973_+	hypothetical protein	NA	NA	NA	NA
WP_010929994.1\|3274042_3274600_+	cyclolysin-activating lysine-acyltransferase	NA	NA	NA	NA
WP_010929993.1\|3274615_3276097_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_010929992.1\|3278267_3279605_-	FAD-binding oxidoreductase	NA	NA	NA	NA
WP_010929991.1\|3279639_3281637_-	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA
WP_010929990.1\|3281654_3283703_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA
WP_010929989.1\|3283833_3284700_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_010929988.1\|3284968_3285934_-	octaprenyl diphosphate synthase	NA	NA	NA	NA
WP_010929987.1\|3286048_3287197_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA
WP_003807462.1\|3287621_3287933_+	50S ribosomal protein L21	NA	NA	NA	NA
WP_003807460.1\|3287966_3288227_+	50S ribosomal protein L27	NA	NA	NA	NA
WP_003807459.1\|3288376_3289510_+	GTPase ObgE	NA	NA	NA	NA
WP_003807457.1\|3289580_3290717_+	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	5.8e-63	44.8
WP_010925762.1\|3290882_3291677_-	response regulator transcription factor	NA	NA	NA	NA
WP_003807452.1\|3291739_3292183_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_005012808.1\|3292298_3293249_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010929985.1\|3293350_3293779_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_010929984.1\|3293851_3296047_+	DUF1156 domain-containing protein	NA	NA	NA	NA
WP_005012067.1\|3296268_3297219_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_023852739.1\|3297178_3297703_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_003814467.1\|3297834_3298806_+	FecR family protein	NA	NA	NA	NA
WP_010929983.1\|3298925_3301370_+	TonB-dependent siderophore receptor	NA	NA	NA	NA
WP_010929982.1\|3301385_3301976_-	polyisoprenoid-binding protein	NA	NA	NA	NA
WP_010929591.1\|3302219_3303170_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_003814462.1\|3303327_3304593_-	saccharopine dehydrogenase family protein	NA	NA	NA	NA
WP_003814461.1\|3304626_3305724_-	carboxynorspermidine decarboxylase	NA	NA	NA	NA
WP_005013747.1\|3306378_3307329_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA

DBSCAN-SWA_27

3318616 : 3418729

108

uncultured_Caudovirales_phage(14.29%)

transposase,tRNA,tail,protease,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005012067.1\|3318616_3319567_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_003814437.1\|3320298_3320676_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA
WP_003814436.1\|3320660_3321362_-	membrane protein	NA	NA	NA	NA
WP_010931409.1\|3321505_3322198_-	nucleotidyltransferase family protein	NA	NA	NA	NA
WP_010931410.1\|3322197_3323301_-	phosphotransferase	NA	NA	NA	NA
WP_010931411.1\|3323410_3325783_+	LPS-assembly protein LptD	NA	NA	NA	NA
WP_010931412.1\|3325779_3327339_+	chaperone SurA	NA	NA	NA	NA
WP_010931413.1\|3327363_3328161_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA
WP_010931414.1\|3328192_3329338_-	glycerate kinase	W6LM47	Streptococcus_phage	1.7e-41	42.2
WP_003814419.1\|3329442_3330885_+	pyruvate kinase	NA	NA	NA	NA
WP_010929184.1\|3330887_3332117_-	spore maturation protein	NA	NA	NA	NA
WP_005012808.1\|3334254_3335205_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_019247922.1\|3336334_3336892_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_019247923.1\|3336867_3337218_-	hypothetical protein	NA	NA	NA	NA
WP_003814657.1\|3337386_3338181_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.4e-15	30.6
WP_010931416.1\|3338177_3339227_-	iron ABC transporter permease	NA	NA	NA	NA
WP_003814652.1\|3339226_3339916_-	tol-pal system protein YbgF	NA	NA	NA	NA
WP_003814650.1\|3340002_3340500_-	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA
WP_010931417.1\|3340531_3341848_-	Tol-Pal system protein TolB	NA	NA	NA	NA
WP_010931418.1\|3341864_3342839_-	cell envelope integrity protein TolA	NA	NA	NA	NA
WP_003814643.1\|3342875_3343334_-	protein TolR	NA	NA	NA	NA
WP_003814641.1\|3343333_3344014_-	protein TolQ	NA	NA	NA	NA
WP_010931419.1\|3344016_3344445_-	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA
WP_003814636.1\|3344497_3346228_-\|tRNA	proline--tRNA ligase	A0A2K9L3R9	Tupanvirus	4.6e-11	29.4
WP_003814635.1\|3346293_3346866_+	RNA pyrophosphohydrolase	NA	NA	NA	NA
WP_010931420.1\|3346846_3347533_+	response regulator	NA	NA	NA	NA
WP_010931421.1\|3347888_3348560_+	SOS response-associated peptidase	Q5QF62	Pseudomonas_virus	4.7e-36	39.9
WP_010931422.1\|3348888_3349110_+	hypothetical protein	NA	NA	NA	NA
WP_010926433.1\|3349109_3349391_+	hypothetical protein	NA	NA	NA	NA
WP_010931423.1\|3349387_3349903_-	DUF2514 family protein	NA	NA	NA	NA
WP_010931424.1\|3349902_3350454_-	lysozyme	NA	NA	NA	NA
WP_010931425.1\|3350432_3350675_-	hypothetical protein	NA	NA	NA	NA
WP_010931426.1\|3350679_3351492_-	hypothetical protein	NA	NA	NA	NA
WP_010926428.1\|3351491_3351755_-	hypothetical protein	NA	NA	NA	NA
WP_124740660.1\|3351795_3351993_-	hypothetical protein	NA	NA	NA	NA
WP_010931428.1\|3351973_3352390_-	hypothetical protein	NA	NA	NA	NA
WP_010931429.1\|3352394_3356351_-	DUF1983 domain-containing protein	A0A0B5A1N2	Achromobacter_phage	3.9e-215	40.8
WP_010931430.1\|3356343_3356733_-	C40 family peptidase	A0A0G3EYJ9	Achromobacter_phage	3.0e-35	50.0
WP_010931431.1\|3356729_3357263_-	DUF1833 family protein	A5A3Q9	Burkholderia_phage	1.1e-40	46.9
WP_010931432.1\|3357330_3357690_-	hypothetical protein	NA	NA	NA	NA
WP_010931433.1\|3357699_3360312_-\|tail	phage tail tape measure protein	A0A2H4J107	uncultured_Caudovirales_phage	4.9e-105	38.6
WP_010931434.1\|3360337_3360628_-	DUF1799 domain-containing protein	A0A2H4JBP7	uncultured_Caudovirales_phage	3.7e-14	45.2
WP_003813412.1\|3360645_3360975_-\|tail	phage tail assembly chaperone	A0A2H4J121	uncultured_Caudovirales_phage	2.9e-15	44.0
WP_010931435.1\|3360984_3361503_-\|tail	phage tail protein	A0A1S5R1H0	Pseudomonas_phage	5.4e-24	38.3
WP_010931436.1\|3361757_3362258_-	HNH endonuclease	A0A1I9SEX5	Klebsiella_phage	4.4e-31	45.1
WP_010931437.1\|3362265_3362688_-	DUF4128 domain-containing protein	NA	NA	NA	NA
WP_010931438.1\|3362684_3363083_-	hypothetical protein	I6PCW1	Cronobacter_phage	4.2e-16	38.0
WP_010931439.1\|3363079_3363475_-	hypothetical protein	A0A2D2W284	Stenotrophomonas_phage	7.8e-07	35.0
WP_010931440.1\|3363474_3363675_-	hypothetical protein	NA	NA	NA	NA
WP_019247789.1\|3363676_3364159_-	hypothetical protein	A0A2H4JE38	uncultured_Caudovirales_phage	1.8e-13	37.1
WP_010931442.1\|3364221_3364473_-	hypothetical protein	NA	NA	NA	NA
WP_005012808.1\|3365147_3366098_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010931443.1\|3366526_3367129_-	hypothetical protein	R9TF81	Synechococcus_phage	7.9e-27	43.6
WP_010931444.1\|3367251_3367494_-	hypothetical protein	A0A0H5AUE5	Pseudomonas_phage	5.6e-16	53.2
WP_010931445.1\|3367499_3368555_-	hypothetical protein	A0A0H5BBX3	Pseudomonas_phage	2.6e-97	50.6
WP_010931446.1\|3368583_3370002_-	DUF4055 domain-containing protein	R9TF43	Synechococcus_phage	2.2e-99	42.1
WP_010931447.1\|3370004_3371282_-\|terminase	terminase large subunit	A0A1B1P9C9	Acinetobacter_phage	2.4e-150	64.7
WP_019247942.1\|3371268_3371754_-\|transposase	transposase	C7U0W1	Enterobacteria_phage	7.3e-39	61.5
WP_005012067.1\|3372393_3373344_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_023853183.1\|3373361_3373583_+	hypothetical protein	NA	NA	NA	NA
WP_161633094.1\|3373600_3374290_-	hypothetical protein	NA	NA	NA	NA
WP_023853179.1\|3374282_3374534_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_010931451.1\|3375088_3375700_+	S24 family peptidase	NA	NA	NA	NA
WP_019247378.1\|3375771_3375978_+	hypothetical protein	NA	NA	NA	NA
WP_005012067.1\|3376229_3377180_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_019248926.1\|3377278_3378352_-	hypothetical protein	NA	NA	NA	NA
WP_010931475.1\|3378519_3379314_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_010925795.1\|3379353_3379878_-	DUF934 domain-containing protein	NA	NA	NA	NA
WP_010931474.1\|3379870_3381613_-	nitrite/sulfite reductase	NA	NA	NA	NA
WP_010931473.1\|3381822_3382581_-	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	4.4e-14	24.4
WP_010931472.1\|3382583_3383291_-	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	8.2e-07	25.4
WP_010931471.1\|3383307_3384189_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
WP_019247734.1\|3384199_3384958_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
WP_019248554.1\|3384926_3385682_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_010931468.1\|3385751_3387170_+	amidase	NA	NA	NA	NA
WP_003819076.1\|3387191_3387842_-	carbonic anhydrase	NA	NA	NA	NA
WP_033446132.1\|3387975_3388311_-	ASCH domain-containing protein	NA	NA	NA	NA
WP_010930800.1\|3388399_3389350_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010931467.1\|3389426_3391247_+	DNA helicase RecQ	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	3.1e-74	35.3
WP_010931466.1\|3391251_3392325_-	Holliday junction branch migration DNA helicase RuvB	A0A127AWE7	Bacillus_phage	2.3e-08	25.7
WP_003814230.1\|3392447_3393416_+	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA
WP_010927008.1\|3393489_3394401_+	complex I NDUFA9 subunit family protein	NA	NA	NA	NA
WP_003814226.1\|3394419_3394992_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA
WP_010931465.1\|3395072_3395621_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA
WP_010931464.1\|3395620_3397210_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	Q58MG4	Prochlorococcus_phage	8.7e-65	47.2
WP_003814221.1\|3397279_3397519_-	DNA-binding protein	NA	NA	NA	NA
WP_023995141.1\|3397559_3398585_-\|tRNA	tRNA dihydrouridine synthase DusB	NA	NA	NA	NA
WP_003814217.1\|3398650_3399832_-	UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase	NA	NA	NA	NA
WP_010931463.1\|3399928_3400381_+	membrane protein	NA	NA	NA	NA
WP_010931462.1\|3400390_3401731_-	aminopeptidase P N-terminal domain-containing protein	NA	NA	NA	NA
WP_010931461.1\|3402047_3403085_+	sodium:calcium antiporter	NA	NA	NA	NA
WP_003814209.1\|3403466_3403826_+	hypothetical protein	NA	NA	NA	NA
WP_041166340.1\|3403909_3404851_-\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_076879617.1\|3404925_3405876_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_003814206.1\|3406169_3407264_+	porin	NA	NA	NA	NA
WP_003814205.1\|3407345_3408227_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA
WP_003814203.1\|3408248_3409088_-	UTP--glucose-1-phosphate uridylyltransferase GalU	A0A127AW70	Bacillus_phage	1.1e-66	48.9
WP_010931459.1\|3409163_3410681_+\|protease	M48 family metalloprotease	NA	NA	NA	NA
WP_010931458.1\|3410777_3411878_-	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_010931457.1\|3411894_3412317_-	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_003814195.1\|3412339_3412552_-	zinc-finger domain-containing protein	NA	NA	NA	NA
WP_010931456.1\|3412598_3413519_-	branched-chain amino acid transaminase	NA	NA	NA	NA
WP_010931455.1\|3413701_3414451_+	AzlC family ABC transporter permease	NA	NA	NA	NA
WP_003814188.1\|3414453_3414783_+	AzlD domain-containing protein	NA	NA	NA	NA
WP_010931454.1\|3414989_3416423_+	DEAD/DEAH box helicase	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	1.5e-52	34.4
WP_003814185.1\|3416434_3416818_-	thioredoxin family protein	NA	NA	NA	NA
WP_010931453.1\|3416879_3417680_+	EI24 domain-containing protein	NA	NA	NA	NA
WP_005015810.1\|3417778_3418729_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA

DBSCAN-SWA_28

4028537 : 4081969

Planktothrix_phage(40.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010931661.1\|4028537_4029488_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010931662.1\|4029657_4030884_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA
WP_010931663.1\|4031083_4031950_+	ATP-binding protein	NA	NA	NA	NA
WP_003815027.1\|4031942_4032905_+	Nudix family hydrolase	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	1.9e-06	53.4
WP_010927663.1\|4033005_4033956_+\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_005012067.1\|4034054_4035005_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010929577.1\|4035103_4036054_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_023994937.1\|4036050_4037544_-	efflux transporter outer membrane subunit	NA	NA	NA	NA
WP_003815032.1\|4037540_4040648_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA
WP_010931665.1\|4040644_4043713_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA
WP_010931666.1\|4043709_4044960_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_003815038.1\|4045140_4045902_-	cell division protein ZapD	NA	NA	NA	NA
WP_019247320.1\|4045934_4046585_-	dephospho-CoA kinase	NA	NA	NA	NA
WP_003820519.1\|4046587_4047427_-	prepilin peptidase	NA	NA	NA	NA
WP_003815047.1\|4047667_4048411_+	copper resistance protein NlpE N-terminal domain-containing protein	NA	NA	NA	NA
WP_003815049.1\|4048493_4048841_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_003815051.1\|4048938_4049781_-	pantoate--beta-alanine ligase	NA	NA	NA	NA
WP_003815053.1\|4049825_4050713_-	segregation/condensation protein A	NA	NA	NA	NA
WP_003815055.1\|4050739_4050928_-	DUF3460 family protein	NA	NA	NA	NA
WP_010931669.1\|4051025_4052483_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA
WP_010931670.1\|4052469_4053996_+	glycerol kinase GlpK	NA	NA	NA	NA
WP_003815061.1\|4054014_4054482_-	CopD family protein	NA	NA	NA	NA
WP_010931671.1\|4054481_4055504_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_169507388.1\|4055624_4056344_-	amino acid ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	4.7e-34	39.9
WP_003815066.1\|4056419_4057520_-	amino acid ABC transporter permease	NA	NA	NA	NA
WP_003815068.1\|4057521_4058712_-	amino acid ABC transporter permease	NA	NA	NA	NA
WP_003815070.1\|4058831_4059848_-	amino acid ABC transporter substrate-binding protein	A0A1B1IT51	uncultured_Mediterranean_phage	1.0e-71	42.1
WP_003815073.1\|4060166_4060838_+	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	9.5e-29	38.2
WP_010927126.1\|4060834_4061743_+	FtsX-like permease family protein	NA	NA	NA	NA
WP_010931672.1\|4061954_4062602_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA
WP_010931673.1\|4066453_4067530_+	A/G-specific adenine glycosylase	NA	NA	NA	NA
WP_003815084.1\|4067540_4068350_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_003815086.1\|4068439_4069213_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_023853189.1\|4069213_4069378_-	hypothetical protein	NA	NA	NA	NA
WP_010930363.1\|4069395_4070346_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_077274100.1\|4070234_4071257_+	CoA transferase	NA	NA	NA	NA
WP_010931674.1\|4071246_4072401_+	CoA transferase	NA	NA	NA	NA
WP_010931675.1\|4072440_4073853_+	MmgE/PrpD family protein	NA	NA	NA	NA
WP_019247370.1\|4073977_4074844_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_010931677.1\|4074845_4075670_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA
WP_023853488.1\|4075666_4076428_+	nitroreductase	M1I6Q5	Acanthocystis_turfacea_Chlorella_virus	2.0e-19	31.0
WP_003808010.1\|4076508_4077195_-	TetR family transcriptional regulator	NA	NA	NA	NA
WP_010931679.1\|4077368_4078376_+	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA
WP_003819309.1\|4078372_4079152_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA
WP_010931680.1\|4079209_4080472_+	CoA transferase	NA	NA	NA	NA
WP_010929591.1\|4081018_4081969_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP013079

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection