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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP013088 Bordetella pertussis strain J178 chromosome, complete genome 5 crisprs csa3,cas3,DinG,DEDDh 0 0 31 0

Results visualization

1. NZ_CP013088
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013088_1 250588-250672 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013088_2 432031-432124 Orphan NA
1 spacers
DEDDh

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013088_3 995298-995392 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013088_4 1818754-1818881 Orphan NA
1 spacers
csa3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013088_5 3432472-3432581 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 27282 : 70036 41 Synechococcus_phage(50.0%) transposase,tRNA NA
DBSCAN-SWA_2 77634 : 136108 54 Planktothrix_phage(22.22%) transposase,tRNA NA
DBSCAN-SWA_3 164891 : 301500 116 Klosneuvirus(10.53%) transposase,tRNA,protease NA
DBSCAN-SWA_4 390854 : 448363 50 Orpheovirus(14.29%) transposase NA
DBSCAN-SWA_5 589367 : 650558 56 uncultured_Mediterranean_phage(40.0%) transposase,protease NA
DBSCAN-SWA_6 655882 : 702072 50 uncultured_Caudovirales_phage(18.18%) tail,transposase,tRNA,terminase NA
DBSCAN-SWA_7 708238 : 762168 46 Planktothrix_phage(50.0%) transposase,tRNA NA
DBSCAN-SWA_8 853046 : 902310 40 Vibrio_phage(33.33%) transposase,holin NA
DBSCAN-SWA_9 911922 : 976862 58 Bacillus_phage(18.18%) transposase NA
DBSCAN-SWA_10 996262 : 1059413 54 Enterococcus_phage(16.67%) transposase NA
DBSCAN-SWA_11 1065397 : 1125460 50 uncultured_Mediterranean_phage(37.5%) transposase,protease,tRNA,holin NA
DBSCAN-SWA_12 1156527 : 1218698 50 Erysipelothrix_phage(33.33%) transposase,tRNA NA
DBSCAN-SWA_13 1269626 : 1326837 49 Klosneuvirus(16.67%) transposase NA
DBSCAN-SWA_14 1417070 : 1469223 46 Salmonella_phage(25.0%) transposase,tRNA NA
DBSCAN-SWA_15 1513148 : 1581234 59 Streptococcus_virus(11.11%) transposase,tRNA NA
DBSCAN-SWA_16 1617183 : 1672774 47 Brazilian_cedratvirus(25.0%) transposase NA
DBSCAN-SWA_17 1777307 : 1834625 56 Tupanvirus(16.67%) transposase,tRNA NA
DBSCAN-SWA_18 1862408 : 1903099 37 Klosneuvirus(25.0%) transposase,tRNA,protease NA
DBSCAN-SWA_19 1914303 : 1963699 45 Klosneuvirus(16.67%) transposase NA
DBSCAN-SWA_20 1975195 : 2039564 51 Vibrio_phage(20.0%) transposase NA
DBSCAN-SWA_21 2171093 : 2220746 43 Synechococcus_phage(15.38%) transposase,tRNA NA
DBSCAN-SWA_22 2477052 : 2535296 54 Planktothrix_phage(28.57%) transposase,tRNA NA
DBSCAN-SWA_23 2577574 : 2644074 56 uncultured_Caudovirales_phage(40.0%) transposase NA
DBSCAN-SWA_24 2672189 : 2709601 39 Planktothrix_phage(33.33%) transposase NA
DBSCAN-SWA_25 2808728 : 2872219 55 Diachasmimorpha_longicaudata_entomopoxvirus(20.0%) transposase NA
DBSCAN-SWA_26 2886694 : 2928053 31 uncultured_Mediterranean_phage(40.0%) transposase,protease NA
DBSCAN-SWA_27 2958439 : 3012670 50 Planktothrix_phage(16.67%) transposase NA
DBSCAN-SWA_28 3382075 : 3447008 55 Staphylococcus_phage(20.0%) transposase,tRNA NA
DBSCAN-SWA_29 3464752 : 3517157 48 Acinetobacter_phage(37.5%) transposase,tRNA NA
DBSCAN-SWA_30 3534275 : 3588076 46 Catovirus(11.11%) transposase,tRNA NA
DBSCAN-SWA_31 4029593 : 4083025 46 Planktothrix_phage(40.0%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage