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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP013092 Bordetella pertussis strain J193 chromosome, complete genome 5 crisprs csa3,cas3,DinG,DEDDh 0 0 31 0

Results visualization

1. NZ_CP013092
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013092_1 250592-250676 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013092_2 432035-432128 Orphan NA
1 spacers
DEDDh

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013092_3 995304-995398 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013092_4 1818757-1818884 Orphan NA
1 spacers
csa3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013092_5 3431429-3431538 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 27282 : 70036 41 Synechococcus_phage(50.0%) transposase,tRNA NA
DBSCAN-SWA_2 77634 : 136108 54 Planktothrix_phage(22.22%) transposase,tRNA NA
DBSCAN-SWA_3 164894 : 225405 51 Diachasmimorpha_longicaudata_entomopoxvirus(11.11%) protease,transposase,tRNA NA
DBSCAN-SWA_4 233337 : 286925 48 Bacillus_phage(25.0%) protease,transposase,tRNA NA
DBSCAN-SWA_5 390858 : 448367 50 Orpheovirus(14.29%) transposase NA
DBSCAN-SWA_6 589372 : 650563 56 uncultured_Mediterranean_phage(40.0%) protease,transposase NA
DBSCAN-SWA_7 655887 : 702078 51 uncultured_Caudovirales_phage(18.18%) terminase,transposase,tRNA,tail NA
DBSCAN-SWA_8 708244 : 762174 46 Planktothrix_phage(50.0%) transposase,tRNA NA
DBSCAN-SWA_9 853052 : 902316 40 Vibrio_phage(33.33%) transposase,holin NA
DBSCAN-SWA_10 911928 : 976868 58 Bacillus_phage(18.18%) transposase NA
DBSCAN-SWA_11 996268 : 1068784 60 Enterococcus_phage(14.29%) transposase,tRNA NA
DBSCAN-SWA_12 1072537 : 1134613 53 Catovirus(20.0%) protease,transposase,tRNA,holin NA
DBSCAN-SWA_13 1156531 : 1218702 50 Erysipelothrix_phage(33.33%) transposase,tRNA NA
DBSCAN-SWA_14 1269630 : 1326841 49 Klosneuvirus(16.67%) transposase NA
DBSCAN-SWA_15 1417074 : 1469227 46 Salmonella_phage(25.0%) transposase,tRNA NA
DBSCAN-SWA_16 1513152 : 1581237 59 Streptococcus_virus(11.11%) transposase,tRNA NA
DBSCAN-SWA_17 1617186 : 1672777 47 Brazilian_cedratvirus(25.0%) transposase NA
DBSCAN-SWA_18 1830543 : 1889813 51 Klosneuvirus(40.0%) protease,transposase,tRNA NA
DBSCAN-SWA_19 1900053 : 1944375 45 Staphylococcus_phage(25.0%) transposase NA
DBSCAN-SWA_20 1974148 : 2038517 51 Vibrio_phage(20.0%) transposase NA
DBSCAN-SWA_21 2170045 : 2219698 43 Synechococcus_phage(15.38%) transposase,tRNA NA
DBSCAN-SWA_22 2476004 : 2534248 54 Planktothrix_phage(28.57%) transposase,tRNA NA
DBSCAN-SWA_23 2576526 : 2643026 56 uncultured_Caudovirales_phage(40.0%) transposase NA
DBSCAN-SWA_24 2671141 : 2708553 39 Planktothrix_phage(33.33%) transposase NA
DBSCAN-SWA_25 2807680 : 2862197 48 Diachasmimorpha_longicaudata_entomopoxvirus(20.0%) transposase NA
DBSCAN-SWA_26 2870222 : 2927008 41 uncultured_Mediterranean_phage(28.57%) protease,transposase NA
DBSCAN-SWA_27 2957394 : 3001085 41 Planktothrix_phage(33.33%) transposase NA
DBSCAN-SWA_28 3381031 : 3434772 48 Staphylococcus_phage(33.33%) transposase NA
DBSCAN-SWA_29 3440927 : 3500225 48 Acinetobacter_phage(27.27%) transposase,tRNA NA
DBSCAN-SWA_30 3515163 : 3573236 47 Planktothrix_phage(12.5%) transposase,tRNA NA
DBSCAN-SWA_31 4027502 : 4080934 46 Planktothrix_phage(40.0%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage