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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP013094 Bordetella pertussis strain J197 chromosome, complete genome 5 crisprs csa3,cas3,DinG,DEDDh 0 0 30 0

Results visualization

1. NZ_CP013094
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013094_1 250588-250672 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013094_2 432030-432123 Orphan NA
1 spacers
DEDDh

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013094_3 995299-995393 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013094_4 1818752-1818879 Orphan NA
1 spacers
csa3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013094_5 3432470-3432579 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 27282 : 70036 41 Synechococcus_phage(50.0%) transposase,tRNA NA
DBSCAN-SWA_2 77634 : 136106 54 Planktothrix_phage(22.22%) transposase,tRNA NA
DBSCAN-SWA_3 164890 : 225401 51 Diachasmimorpha_longicaudata_entomopoxvirus(11.11%) protease,transposase,tRNA NA
DBSCAN-SWA_4 233333 : 286920 48 Bacillus_phage(25.0%) protease,transposase,tRNA NA
DBSCAN-SWA_5 390853 : 448362 50 Orpheovirus(14.29%) transposase NA
DBSCAN-SWA_6 589367 : 650558 56 uncultured_Mediterranean_phage(40.0%) protease,transposase NA
DBSCAN-SWA_7 655882 : 702073 51 uncultured_Caudovirales_phage(18.18%) terminase,tail,transposase,tRNA NA
DBSCAN-SWA_8 708239 : 762169 46 Planktothrix_phage(50.0%) transposase,tRNA NA
DBSCAN-SWA_9 853047 : 902311 40 Vibrio_phage(33.33%) holin,transposase NA
DBSCAN-SWA_10 911923 : 976863 58 Bacillus_phage(18.18%) transposase NA
DBSCAN-SWA_11 996263 : 1059414 54 Enterococcus_phage(16.67%) transposase NA
DBSCAN-SWA_12 1065398 : 1125461 50 uncultured_Mediterranean_phage(37.5%) holin,protease,transposase,tRNA NA
DBSCAN-SWA_13 1156528 : 1218699 50 Erysipelothrix_phage(33.33%) transposase,tRNA NA
DBSCAN-SWA_14 1269627 : 1326838 49 Klosneuvirus(16.67%) transposase NA
DBSCAN-SWA_15 1417069 : 1469221 46 Salmonella_phage(25.0%) transposase,tRNA NA
DBSCAN-SWA_16 1513145 : 1581231 59 Streptococcus_virus(11.11%) transposase,tRNA NA
DBSCAN-SWA_17 1617180 : 1672771 47 Brazilian_cedratvirus(25.0%) transposase NA
DBSCAN-SWA_18 1777305 : 1834623 56 Tupanvirus(16.67%) transposase,tRNA NA
DBSCAN-SWA_19 1862406 : 1903097 37 Klosneuvirus(25.0%) protease,transposase,tRNA NA
DBSCAN-SWA_20 1914301 : 1963697 45 Klosneuvirus(16.67%) transposase NA
DBSCAN-SWA_21 1975193 : 2039562 51 Vibrio_phage(20.0%) transposase NA
DBSCAN-SWA_22 2171090 : 2220743 43 Synechococcus_phage(15.38%) transposase,tRNA NA
DBSCAN-SWA_23 2577571 : 2644071 56 uncultured_Caudovirales_phage(40.0%) transposase NA
DBSCAN-SWA_24 2808723 : 2863240 48 Diachasmimorpha_longicaudata_entomopoxvirus(20.0%) transposase NA
DBSCAN-SWA_25 2871265 : 2928050 41 uncultured_Mediterranean_phage(28.57%) protease,transposase NA
DBSCAN-SWA_26 2958436 : 3002127 41 Planktothrix_phage(33.33%) transposase NA
DBSCAN-SWA_27 3382072 : 3435813 48 Staphylococcus_phage(33.33%) transposase NA
DBSCAN-SWA_28 3441968 : 3501266 48 Acinetobacter_phage(27.27%) transposase,tRNA NA
DBSCAN-SWA_29 3516204 : 3574277 47 Planktothrix_phage(12.5%) transposase,tRNA NA
DBSCAN-SWA_30 4029592 : 4083024 46 Planktothrix_phage(40.0%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage