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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP013096 Bordetella pertussis strain J225 chromosome, complete genome 5 crisprs csa3,cas3,DinG,DEDDh 0 0 34 0

Results visualization

1. NZ_CP013096
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013096_1 250592-250676 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013096_2 432035-432128 Orphan NA
1 spacers
DEDDh

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013096_3 996353-996447 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013096_4 1819809-1819936 Orphan NA
1 spacers
csa3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013096_5 3432481-3432590 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 27282 : 70036 41 Synechococcus_phage(50.0%) tRNA,transposase NA
DBSCAN-SWA_2 77634 : 136108 54 Planktothrix_phage(22.22%) tRNA,transposase NA
DBSCAN-SWA_3 164894 : 225405 51 Diachasmimorpha_longicaudata_entomopoxvirus(11.11%) tRNA,protease,transposase NA
DBSCAN-SWA_4 233337 : 286925 48 Bacillus_phage(25.0%) tRNA,protease,transposase NA
DBSCAN-SWA_5 390858 : 448367 50 Orpheovirus(14.29%) transposase NA
DBSCAN-SWA_6 589372 : 650563 56 uncultured_Mediterranean_phage(40.0%) protease,transposase NA
DBSCAN-SWA_7 655887 : 702078 51 uncultured_Caudovirales_phage(18.18%) tRNA,terminase,tail,transposase NA
DBSCAN-SWA_8 708244 : 762174 46 Planktothrix_phage(50.0%) tRNA,transposase NA
DBSCAN-SWA_9 853052 : 957544 88 Bacillus_phage(20.0%) holin,transposase NA
DBSCAN-SWA_10 976966 : 1047233 57 Streptococcus_phage(14.29%) transposase NA
DBSCAN-SWA_11 1059451 : 1117882 48 uncultured_Mediterranean_phage(37.5%) tRNA,protease,holin,transposase NA
DBSCAN-SWA_12 1157582 : 1219753 50 Erysipelothrix_phage(33.33%) tRNA,transposase NA
DBSCAN-SWA_13 1270681 : 1327891 50 Klosneuvirus(16.67%) transposase NA
DBSCAN-SWA_14 1418124 : 1470277 46 Salmonella_phage(25.0%) tRNA,transposase NA
DBSCAN-SWA_15 1514202 : 1582288 59 Streptococcus_virus(11.11%) tRNA,transposase NA
DBSCAN-SWA_16 1618237 : 1673828 47 Brazilian_cedratvirus(25.0%) transposase NA
DBSCAN-SWA_17 1831595 : 1890865 51 Klosneuvirus(40.0%) tRNA,protease,transposase NA
DBSCAN-SWA_18 1901105 : 1945428 45 Staphylococcus_phage(25.0%) transposase NA
DBSCAN-SWA_19 1975201 : 2039570 51 Vibrio_phage(20.0%) transposase NA
DBSCAN-SWA_20 2171099 : 2220751 43 Synechococcus_phage(15.38%) tRNA,transposase NA
DBSCAN-SWA_21 2476009 : 2534253 54 Planktothrix_phage(28.57%) tRNA,transposase NA
DBSCAN-SWA_22 2576531 : 2643031 56 uncultured_Caudovirales_phage(40.0%) transposase NA
DBSCAN-SWA_23 2671146 : 2708558 39 Planktothrix_phage(33.33%) transposase NA
DBSCAN-SWA_24 2807685 : 2862202 48 Diachasmimorpha_longicaudata_entomopoxvirus(20.0%) transposase NA
DBSCAN-SWA_25 2870227 : 2927012 41 uncultured_Mediterranean_phage(28.57%) protease,transposase NA
DBSCAN-SWA_26 2957398 : 3001089 41 Planktothrix_phage(33.33%) transposase NA
DBSCAN-SWA_27 3123673 : 3187507 57 Pseudomonas_phage(30.0%) tRNA,protease,transposase NA
DBSCAN-SWA_28 3235650 : 3249838 15 Erwinia_phage(100.0%) protease,transposase NA
DBSCAN-SWA_29 3268261 : 3332552 49 Tupanvirus(12.5%) protease,tRNA,holin,integrase,transposase attL 3261655:3261673|attR 3334413:3334431
DBSCAN-SWA_30 3382083 : 3435824 48 Staphylococcus_phage(33.33%) transposase NA
DBSCAN-SWA_31 3441979 : 3501277 48 Acinetobacter_phage(27.27%) tRNA,transposase NA
DBSCAN-SWA_32 3516215 : 3574288 47 Planktothrix_phage(12.5%) tRNA,transposase NA
DBSCAN-SWA_33 3706411 : 3839250 113 uncultured_Mediterranean_phage(10.34%) tRNA,integrase,transposase attL 3754706:3754765|attR 3786442:3787067
DBSCAN-SWA_34 4028465 : 4081897 46 Planktothrix_phage(40.0%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage