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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP013865 Bordetella pertussis strain J305 chromosome, complete genome 5 crisprs csa3,cas3,DinG,DEDDh 0 0 28 0

Results visualization

1. NZ_CP013865
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013865_1 251643-251727 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013865_2 434135-434228 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013865_3 999502-999596 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013865_4 1896979-1897106 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013865_5 3435653-3435762 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 59497 54 Natrialba_phage(12.5%) transposase,tRNA NA
DBSCAN-SWA_2 70134 : 123122 50 Planktothrix_phage(20.0%) transposase,tRNA NA
DBSCAN-SWA_3 165944 : 226455 51 Diachasmimorpha_longicaudata_entomopoxvirus(11.11%) protease,transposase,tRNA NA
DBSCAN-SWA_4 234388 : 298128 53 Bacillus_phage(20.0%) transposase,tRNA NA
DBSCAN-SWA_5 379179 : 431318 50 Paramecium_bursaria_Chlorella_virus(14.29%) protease,transposase NA
DBSCAN-SWA_6 593570 : 654761 56 uncultured_Mediterranean_phage(40.0%) protease,transposase NA
DBSCAN-SWA_7 660085 : 706276 51 uncultured_Caudovirales_phage(18.18%) tail,terminase,transposase,tRNA NA
DBSCAN-SWA_8 712442 : 766372 46 Planktothrix_phage(50.0%) transposase,tRNA NA
DBSCAN-SWA_9 888961 : 956937 56 Bacillus_phage(33.33%) transposase NA
DBSCAN-SWA_10 1000466 : 1072983 60 Enterococcus_phage(14.29%) transposase,tRNA NA
DBSCAN-SWA_11 1076736 : 1139862 53 Catovirus(20.0%) holin,transposase,tRNA NA
DBSCAN-SWA_12 1321103 : 1389590 58 Planktothrix_phage(33.33%) transposase NA
DBSCAN-SWA_13 1450081 : 1505569 56 Mollivirus(16.67%) protease,transposase NA
DBSCAN-SWA_14 1696497 : 1760075 49 Klebsiella_phage(11.11%) protease,transposase NA
DBSCAN-SWA_15 1799188 : 1847203 42 Moraxella_phage(18.18%) transposase,tRNA NA
DBSCAN-SWA_16 1908765 : 1968035 51 Klosneuvirus(40.0%) protease,transposase,tRNA NA
DBSCAN-SWA_17 1978275 : 2022598 45 Staphylococcus_phage(25.0%) transposase NA
DBSCAN-SWA_18 2035804 : 2073294 35 Erysipelothrix_phage(100.0%) transposase NA
DBSCAN-SWA_19 2302169 : 2363517 52 Yellowstone_lake_phycodnavirus(12.5%) transposase,tRNA NA
DBSCAN-SWA_20 2384308 : 2455462 54 Tetraselmis_virus(10.0%) transposase NA
DBSCAN-SWA_21 2540711 : 2591883 47 Salmonella_phage(20.0%) transposase,tRNA NA
DBSCAN-SWA_22 2690178 : 2730847 42 Salmonella_phage(33.33%) transposase,tRNA NA
DBSCAN-SWA_23 2786312 : 2859182 58 Moraxella_phage(16.67%) transposase,tRNA NA
DBSCAN-SWA_24 2862325 : 2929135 50 uncultured_Mediterranean_phage(28.57%) protease,transposase NA
DBSCAN-SWA_25 2959521 : 2998710 37 Planktothrix_phage(50.0%) transposase NA
DBSCAN-SWA_26 3384206 : 3504451 99 Acinetobacter_phage(20.0%) transposase,tRNA NA
DBSCAN-SWA_27 3519389 : 3577462 47 Planktothrix_phage(12.5%) transposase,tRNA NA
DBSCAN-SWA_28 4010724 : 4075636 60 Planktothrix_phage(40.0%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage