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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP013870 Bordetella pertussis strain F501 chromosome, complete genome 5 crisprs DEDDh,csa3,cas3,DinG 0 0 27 0

Results visualization

1. NZ_CP013870
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013870_1 250592-250676 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013870_2 622951-623060 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013870_3 1837856-1837983 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013870_4 2904472-2904588 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013870_5 3619244-3619337 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 27282 : 70036 41 Synechococcus_phage(50.0%) tRNA,transposase NA
DBSCAN-SWA_2 77634 : 136108 54 Planktothrix_phage(22.22%) tRNA,transposase NA
DBSCAN-SWA_3 164894 : 225405 51 Diachasmimorpha_longicaudata_entomopoxvirus(11.11%) tRNA,protease,transposase NA
DBSCAN-SWA_4 233337 : 286925 47 Bacillus_phage(25.0%) tRNA,protease,transposase NA
DBSCAN-SWA_5 468502 : 585348 101 Acinetobacter_phage(22.22%) tRNA,transposase NA
DBSCAN-SWA_6 589762 : 653595 47 Pandoravirus(12.5%) tRNA,transposase NA
DBSCAN-SWA_7 672506 : 749815 57 Bacillus_phage(20.0%) integrase,tRNA,protease,transposase attL 719643:719661|attR 739531:739549
DBSCAN-SWA_8 994701 : 1097094 93 Bacillus_virus(27.27%) tRNA,transposase NA
DBSCAN-SWA_9 1127480 : 1198451 52 uncultured_Mediterranean_phage(25.0%) protease,transposase NA
DBSCAN-SWA_10 1245845 : 1326720 58 Bacillus_virus(25.0%) tRNA,transposase NA
DBSCAN-SWA_11 1446115 : 1510331 60 Salmonella_phage(16.67%) tRNA,protease,transposase NA
DBSCAN-SWA_12 1740066 : 1788081 42 Moraxella_phage(18.18%) tRNA,transposase NA
DBSCAN-SWA_13 1849642 : 1908912 51 Klosneuvirus(40.0%) tRNA,protease,transposase NA
DBSCAN-SWA_14 1919152 : 1962438 44 Staphylococcus_phage(25.0%) transposase NA
DBSCAN-SWA_15 1992211 : 2056580 51 Vibrio_phage(20.0%) transposase NA
DBSCAN-SWA_16 2243048 : 2304396 52 Yellowstone_lake_phycodnavirus(12.5%) tRNA,transposase NA
DBSCAN-SWA_17 2325187 : 2396341 55 Tetraselmis_virus(10.0%) transposase NA
DBSCAN-SWA_18 2492170 : 2550951 49 Planktothrix_phage(28.57%) tRNA,transposase NA
DBSCAN-SWA_19 2603488 : 2669988 56 uncultured_Caudovirales_phage(40.0%) transposase NA
DBSCAN-SWA_20 2869376 : 2942702 52 Catovirus(22.22%) tRNA,protease,transposase NA
DBSCAN-SWA_21 2954427 : 3004040 42 uncultured_Mediterranean_phage(50.0%) holin,tRNA,transposase NA
DBSCAN-SWA_22 3024991 : 3097485 58 Bacillus_virus(16.67%) transposase NA
DBSCAN-SWA_23 3110992 : 3164510 44 Bacillus_phage(33.33%) holin,transposase NA
DBSCAN-SWA_24 3228968 : 3302130 57 Klosneuvirus(16.67%) transposase NA
DBSCAN-SWA_25 3313417 : 3413530 107 uncultured_Caudovirales_phage(14.29%) tRNA,tail,transposase,protease,terminase NA
DBSCAN-SWA_26 3701196 : 3834122 114 uncultured_Mediterranean_phage(10.34%) integrase,tRNA,transposase attL 3745839:3745856|attR 3790479:3790496
DBSCAN-SWA_27 4023338 : 4076770 45 Planktothrix_phage(40.0%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage