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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP013882 Bordetella pertussis strain H876 chromosome, complete genome 5 crisprs DEDDh,csa3,cas3,DinG 0 0 29 0

Results visualization

1. NZ_CP013882
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013882_1 251652-251736 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013882_2 625060-625169 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013882_3 1841013-1841140 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013882_4 2908664-2908780 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013882_5 3622386-3622479 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 27282 : 71085 42 Synechococcus_phage(50.0%) tRNA,transposase NA
DBSCAN-SWA_2 78683 : 137157 54 Planktothrix_phage(22.22%) tRNA,transposase NA
DBSCAN-SWA_3 165942 : 226465 51 Diachasmimorpha_longicaudata_entomopoxvirus(11.11%) tRNA,protease,transposase NA
DBSCAN-SWA_4 234397 : 287985 48 Bacillus_phage(25.0%) tRNA,protease,transposase NA
DBSCAN-SWA_5 556370 : 615670 48 Acinetobacter_phage(27.27%) tRNA,transposase NA
DBSCAN-SWA_6 621825 : 675566 48 Salmonella_phage(33.33%) transposase NA
DBSCAN-SWA_7 724504 : 764454 29 Pseudomonas_phage(33.33%) protease,tRNA,integrase,transposase attL 721752:721770|attR 741640:741658
DBSCAN-SWA_8 774381 : 821999 46 Bovine_alphaherpesvirus(10.0%) tRNA,protease,transposase,holin NA
DBSCAN-SWA_9 997857 : 1100250 94 Bacillus_virus(27.27%) tRNA,transposase NA
DBSCAN-SWA_10 1130636 : 1201607 52 uncultured_Mediterranean_phage(25.0%) protease,transposase NA
DBSCAN-SWA_11 1249001 : 1329876 58 Bacillus_virus(25.0%) tRNA,transposase NA
DBSCAN-SWA_12 1449271 : 1513487 60 Salmonella_phage(16.67%) tRNA,protease,transposase NA
DBSCAN-SWA_13 1743222 : 1791237 42 Moraxella_phage(18.18%) tRNA,transposase NA
DBSCAN-SWA_14 1852799 : 1912069 51 Klosneuvirus(40.0%) tRNA,protease,transposase NA
DBSCAN-SWA_15 1922309 : 1979806 56 Staphylococcus_phage(16.67%) transposase NA
DBSCAN-SWA_16 1995356 : 2059725 51 Vibrio_phage(20.0%) transposase NA
DBSCAN-SWA_17 2246192 : 2307540 52 Yellowstone_lake_phycodnavirus(12.5%) tRNA,transposase NA
DBSCAN-SWA_18 2328331 : 2399485 55 Tetraselmis_virus(10.0%) transposase NA
DBSCAN-SWA_19 2496362 : 2555143 50 Planktothrix_phage(28.57%) tRNA,transposase NA
DBSCAN-SWA_20 2607680 : 2674180 56 uncultured_Caudovirales_phage(40.0%) transposase NA
DBSCAN-SWA_21 2836745 : 2902330 52 Oenococcus_phage(33.33%) tRNA,transposase NA
DBSCAN-SWA_22 2919900 : 2979794 51 Catovirus(22.22%) tRNA,transposase,holin NA
DBSCAN-SWA_23 2984680 : 3057197 60 Pseudomonas_phage(14.29%) tRNA,transposase NA
DBSCAN-SWA_24 3076597 : 3141537 59 Bacillus_phage(18.18%) transposase NA
DBSCAN-SWA_25 3233160 : 3302163 55 Klosneuvirus(16.67%) transposase NA
DBSCAN-SWA_26 3317609 : 3417722 107 uncultured_Caudovirales_phage(14.29%) protease,tail,tRNA,transposase,terminase NA
DBSCAN-SWA_27 3704338 : 3734324 31 Streptococcus_phage(12.5%) tRNA,transposase NA
DBSCAN-SWA_28 3754493 : 3789155 32 Burkholderia_phage(11.11%) integrase,transposase attL 3751080:3751097|attR 3794659:3794676
DBSCAN-SWA_29 4004415 : 4069327 59 Planktothrix_phage(40.0%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage