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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP013885 Bordetella pertussis strain J097 chromosome, complete genome 5 crisprs csa3,cas3,DinG,DEDDh 0 0 28 0

Results visualization

1. NZ_CP013885
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013885_1 250590-250674 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013885_2 432033-432126 Orphan NA
1 spacers
DEDDh

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013885_3 997399-997493 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013885_4 1821903-1822030 Orphan NA
1 spacers
csa3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013885_5 3434569-3434678 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 27282 : 70036 42 Synechococcus_phage(50.0%) transposase,tRNA NA
DBSCAN-SWA_2 77634 : 136108 54 Planktothrix_phage(22.22%) transposase,tRNA NA
DBSCAN-SWA_3 164892 : 225403 51 Diachasmimorpha_longicaudata_entomopoxvirus(11.11%) transposase,protease,tRNA NA
DBSCAN-SWA_4 233335 : 286923 48 Bacillus_phage(25.0%) transposase,protease,tRNA NA
DBSCAN-SWA_5 390856 : 448365 50 Orpheovirus(14.29%) transposase NA
DBSCAN-SWA_6 591468 : 652659 55 uncultured_Mediterranean_phage(40.0%) transposase,protease NA
DBSCAN-SWA_7 657983 : 704174 50 uncultured_Caudovirales_phage(18.18%) transposase,tRNA,tail,terminase NA
DBSCAN-SWA_8 710340 : 780416 58 Planktothrix_phage(40.0%) transposase,tRNA NA
DBSCAN-SWA_9 886858 : 954834 58 Bacillus_phage(33.33%) transposase NA
DBSCAN-SWA_10 998363 : 1070880 60 Enterococcus_phage(14.29%) transposase,tRNA NA
DBSCAN-SWA_11 1074633 : 1136709 52 Catovirus(20.0%) transposase,tRNA,holin NA
DBSCAN-SWA_12 1154279 : 1220799 53 Erysipelothrix_phage(33.33%) transposase,tRNA NA
DBSCAN-SWA_13 1271727 : 1330528 50 Salmonella_phage(28.57%) transposase NA
DBSCAN-SWA_14 1419170 : 1471322 45 Salmonella_phage(25.0%) transposase,tRNA NA
DBSCAN-SWA_15 1515247 : 1583334 59 Streptococcus_virus(11.11%) transposase,tRNA NA
DBSCAN-SWA_16 1620332 : 1675922 47 Brazilian_cedratvirus(25.0%) transposase NA
DBSCAN-SWA_17 1833689 : 1892959 51 Klosneuvirus(40.0%) transposase,protease,tRNA NA
DBSCAN-SWA_18 1903199 : 1947521 43 Staphylococcus_phage(25.0%) transposase NA
DBSCAN-SWA_19 2173191 : 2222843 43 Synechococcus_phage(15.38%) transposase,tRNA NA
DBSCAN-SWA_20 2479149 : 2537393 53 Planktothrix_phage(28.57%) transposase,tRNA NA
DBSCAN-SWA_21 2645219 : 2710648 53 Planktothrix_phage(33.33%) transposase NA
DBSCAN-SWA_22 2810824 : 2865341 48 Diachasmimorpha_longicaudata_entomopoxvirus(20.0%) transposase NA
DBSCAN-SWA_23 2873366 : 2930152 40 uncultured_Mediterranean_phage(28.57%) transposase,protease NA
DBSCAN-SWA_24 2960538 : 3004229 40 Planktothrix_phage(33.33%) transposase NA
DBSCAN-SWA_25 3384172 : 3449105 55 Staphylococcus_phage(20.0%) transposase,tRNA NA
DBSCAN-SWA_26 3466849 : 3519254 48 Acinetobacter_phage(37.5%) transposase,tRNA NA
DBSCAN-SWA_27 3536371 : 3590171 46 Catovirus(11.11%) transposase,tRNA NA
DBSCAN-SWA_28 3708496 : 3841422 114 uncultured_Mediterranean_phage(10.34%) transposase,integrase,tRNA attL 3753139:3753156|attR 3797779:3797796
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage