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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP013888 Bordetella pertussis strain J104 chromosome, complete genome 5 crisprs csa3,cas3,DinG,DEDDh 0 0 31 0

Results visualization

1. NZ_CP013888
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013888_1 250590-250674 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013888_2 432033-432126 Orphan NA
1 spacers
DEDDh

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013888_3 996352-996446 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013888_4 1819803-1819930 Orphan NA
1 spacers
csa3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013888_5 3433530-3433639 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 27282 : 70036 42 Synechococcus_phage(50.0%) tRNA,transposase NA
DBSCAN-SWA_2 77634 : 136108 53 Planktothrix_phage(22.22%) tRNA,transposase NA
DBSCAN-SWA_3 164893 : 225403 51 Diachasmimorpha_longicaudata_entomopoxvirus(11.11%) tRNA,protease,transposase NA
DBSCAN-SWA_4 233335 : 286923 47 Bacillus_phage(25.0%) tRNA,protease,transposase NA
DBSCAN-SWA_5 390856 : 448365 50 Orpheovirus(14.29%) transposase NA
DBSCAN-SWA_6 590419 : 651611 56 uncultured_Mediterranean_phage(40.0%) protease,transposase NA
DBSCAN-SWA_7 656935 : 703126 51 uncultured_Caudovirales_phage(18.18%) tail,tRNA,terminase,transposase NA
DBSCAN-SWA_8 709292 : 763222 46 Planktothrix_phage(50.0%) tRNA,transposase NA
DBSCAN-SWA_9 885811 : 953787 56 Bacillus_phage(33.33%) transposase NA
DBSCAN-SWA_10 997316 : 1069833 60 Enterococcus_phage(14.29%) tRNA,transposase NA
DBSCAN-SWA_11 1073586 : 1135662 53 Catovirus(20.0%) tRNA,holin,transposase NA
DBSCAN-SWA_12 1153232 : 1219751 54 Erysipelothrix_phage(33.33%) tRNA,transposase NA
DBSCAN-SWA_13 1270679 : 1327890 49 Klosneuvirus(16.67%) transposase NA
DBSCAN-SWA_14 1418121 : 1470273 45 Salmonella_phage(25.0%) tRNA,transposase NA
DBSCAN-SWA_15 1514198 : 1582283 57 Streptococcus_virus(11.11%) tRNA,transposase NA
DBSCAN-SWA_16 1618232 : 1673823 47 Brazilian_cedratvirus(25.0%) transposase NA
DBSCAN-SWA_17 1831589 : 1890859 51 Klosneuvirus(40.0%) tRNA,protease,transposase NA
DBSCAN-SWA_18 1901099 : 1945422 45 Staphylococcus_phage(25.0%) transposase NA
DBSCAN-SWA_19 1975195 : 2039571 51 Vibrio_phage(20.0%) transposase NA
DBSCAN-SWA_20 2171100 : 2220753 43 Synechococcus_phage(15.38%) tRNA,transposase NA
DBSCAN-SWA_21 2477060 : 2535304 54 Planktothrix_phage(28.57%) tRNA,transposase NA
DBSCAN-SWA_22 2577582 : 2644082 56 uncultured_Caudovirales_phage(40.0%) transposase NA
DBSCAN-SWA_23 2672197 : 2709609 39 Planktothrix_phage(33.33%) transposase NA
DBSCAN-SWA_24 2808736 : 2863253 48 Diachasmimorpha_longicaudata_entomopoxvirus(20.0%) transposase NA
DBSCAN-SWA_25 2871278 : 2928062 40 uncultured_Mediterranean_phage(28.57%) protease,transposase NA
DBSCAN-SWA_26 2958448 : 3002139 41 Planktothrix_phage(33.33%) transposase NA
DBSCAN-SWA_27 3026050 : 3094747 52 Staphylococcus_phage(16.67%) tRNA,protease,transposase NA
DBSCAN-SWA_28 3383132 : 3436873 48 Staphylococcus_phage(33.33%) transposase NA
DBSCAN-SWA_29 3443028 : 3502326 47 Acinetobacter_phage(27.27%) tRNA,transposase NA
DBSCAN-SWA_30 3517264 : 3575337 47 Planktothrix_phage(12.5%) tRNA,transposase NA
DBSCAN-SWA_31 4007548 : 4072459 59 Planktothrix_phage(40.0%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage