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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP013890 Bordetella pertussis strain J120 chromosome, complete genome 5 crisprs csa3,cas3,DinG,DEDDh 0 0 30 0

Results visualization

1. NZ_CP013890
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013890_1 250589-250673 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013890_2 432032-432125 Orphan NA
1 spacers
DEDDh

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013890_3 996350-996444 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013890_4 1820854-1820981 Orphan NA
1 spacers
csa3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013890_5 3434571-3434680 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 27282 : 70036 42 Synechococcus_phage(50.0%) transposase,tRNA NA
DBSCAN-SWA_2 77634 : 136108 53 Planktothrix_phage(22.22%) transposase,tRNA NA
DBSCAN-SWA_3 164892 : 225402 51 Diachasmimorpha_longicaudata_entomopoxvirus(11.11%) protease,transposase,tRNA NA
DBSCAN-SWA_4 233334 : 286922 47 Bacillus_phage(25.0%) protease,transposase,tRNA NA
DBSCAN-SWA_5 390855 : 448364 50 Orpheovirus(14.29%) transposase NA
DBSCAN-SWA_6 590418 : 651609 55 uncultured_Mediterranean_phage(40.0%) protease,transposase NA
DBSCAN-SWA_7 656933 : 703124 50 uncultured_Caudovirales_phage(18.18%) tail,terminase,transposase,tRNA NA
DBSCAN-SWA_8 709290 : 763220 46 Planktothrix_phage(50.0%) transposase,tRNA NA
DBSCAN-SWA_9 885809 : 953785 56 Bacillus_phage(33.33%) transposase NA
DBSCAN-SWA_10 997314 : 1069831 60 Enterococcus_phage(14.29%) transposase,tRNA NA
DBSCAN-SWA_11 1073584 : 1135660 52 Catovirus(20.0%) holin,transposase,tRNA NA
DBSCAN-SWA_12 1153230 : 1219749 53 Erysipelothrix_phage(33.33%) transposase,tRNA NA
DBSCAN-SWA_13 1270677 : 1327888 48 Klosneuvirus(16.67%) transposase NA
DBSCAN-SWA_14 1418121 : 1470274 44 Salmonella_phage(25.0%) transposase,tRNA NA
DBSCAN-SWA_15 1514199 : 1574110 50 Streptococcus_virus(12.5%) transposase,tRNA NA
DBSCAN-SWA_16 1619282 : 1674873 47 Brazilian_cedratvirus(25.0%) transposase NA
DBSCAN-SWA_17 1779407 : 1836725 56 Tupanvirus(16.67%) transposase,tRNA NA
DBSCAN-SWA_18 1864508 : 1905199 37 Klosneuvirus(25.0%) protease,transposase,tRNA NA
DBSCAN-SWA_19 1916403 : 1965799 45 Klosneuvirus(16.67%) transposase NA
DBSCAN-SWA_20 2172144 : 2221797 43 Synechococcus_phage(15.38%) transposase,tRNA NA
DBSCAN-SWA_21 2478104 : 2536348 53 Planktothrix_phage(28.57%) transposase,tRNA NA
DBSCAN-SWA_22 2578626 : 2645126 56 uncultured_Caudovirales_phage(40.0%) transposase NA
DBSCAN-SWA_23 2673241 : 2710652 39 Planktothrix_phage(33.33%) transposase NA
DBSCAN-SWA_24 2809779 : 2864296 48 Diachasmimorpha_longicaudata_entomopoxvirus(20.0%) transposase NA
DBSCAN-SWA_25 2872321 : 2930153 42 uncultured_Mediterranean_phage(28.57%) protease,transposase NA
DBSCAN-SWA_26 2960539 : 3004230 40 Planktothrix_phage(33.33%) transposase NA
DBSCAN-SWA_27 3384173 : 3437914 48 Staphylococcus_phage(33.33%) transposase NA
DBSCAN-SWA_28 3444069 : 3503367 47 Acinetobacter_phage(27.27%) transposase,tRNA NA
DBSCAN-SWA_29 3518305 : 3576378 47 Planktothrix_phage(12.5%) transposase,tRNA NA
DBSCAN-SWA_30 4008590 : 4073502 59 Planktothrix_phage(40.0%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage