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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP013894 Bordetella pertussis strain J149 chromosome, complete genome 5 crisprs csa3,cas3,DinG,DEDDh 0 0 28 0

Results visualization

1. NZ_CP013894
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013894_1 250592-250676 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013894_2 432035-432128 Orphan NA
1 spacers
DEDDh

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013894_3 995303-995397 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013894_4 1892015-1892142 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013894_5 3429635-3429744 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 27282 : 70036 42 Synechococcus_phage(50.0%) tRNA,transposase NA
DBSCAN-SWA_2 77634 : 136108 53 Planktothrix_phage(22.22%) tRNA,transposase NA
DBSCAN-SWA_3 164893 : 225404 51 Diachasmimorpha_longicaudata_entomopoxvirus(11.11%) tRNA,protease,transposase NA
DBSCAN-SWA_4 233337 : 286925 47 Bacillus_phage(25.0%) tRNA,protease,transposase NA
DBSCAN-SWA_5 390858 : 448367 50 Orpheovirus(14.29%) transposase NA
DBSCAN-SWA_6 589372 : 650562 56 uncultured_Mediterranean_phage(40.0%) protease,transposase NA
DBSCAN-SWA_7 655886 : 702077 51 uncultured_Caudovirales_phage(18.18%) tRNA,terminase,transposase,tail NA
DBSCAN-SWA_8 708243 : 762173 46 Planktothrix_phage(50.0%) tRNA,transposase NA
DBSCAN-SWA_9 884762 : 952738 56 Bacillus_phage(33.33%) transposase NA
DBSCAN-SWA_10 975916 : 1047232 57 Streptococcus_phage(14.29%) transposase NA
DBSCAN-SWA_11 1059450 : 1197161 107 uncultured_Mediterranean_phage(17.65%) holin,tRNA,transposase NA
DBSCAN-SWA_12 1317184 : 1385671 58 Planktothrix_phage(33.33%) transposase NA
DBSCAN-SWA_13 1446162 : 1501650 56 Mollivirus(16.67%) protease,transposase NA
DBSCAN-SWA_14 1794224 : 1842239 42 Moraxella_phage(18.18%) tRNA,transposase NA
DBSCAN-SWA_15 1889657 : 1945086 49 uncultured_Caudovirales_phage(16.67%) tRNA,transposase NA
DBSCAN-SWA_16 1948147 : 1995436 47 Klosneuvirus(22.22%) transposase,tRNA,protease NA
DBSCAN-SWA_17 2016129 : 2069369 48 Mycobacterium_phage(33.33%) transposase NA
DBSCAN-SWA_18 2299293 : 2360641 52 Yellowstone_lake_phycodnavirus(12.5%) tRNA,transposase NA
DBSCAN-SWA_19 2381432 : 2452586 54 Tetraselmis_virus(10.0%) transposase NA
DBSCAN-SWA_20 2536787 : 2599088 54 Salmonella_phage(18.18%) tRNA,transposase NA
DBSCAN-SWA_21 2685205 : 2725875 42 Salmonella_phage(33.33%) tRNA,transposase NA
DBSCAN-SWA_22 2781340 : 2854210 58 Moraxella_phage(16.67%) tRNA,transposase NA
DBSCAN-SWA_23 2857353 : 2924165 50 uncultured_Mediterranean_phage(28.57%) protease,transposase NA
DBSCAN-SWA_24 2954551 : 2993740 37 Planktothrix_phage(50.0%) transposase NA
DBSCAN-SWA_25 3379237 : 3432978 48 Staphylococcus_phage(33.33%) transposase NA
DBSCAN-SWA_26 3439133 : 3498433 47 Acinetobacter_phage(27.27%) tRNA,transposase NA
DBSCAN-SWA_27 3513371 : 3572493 48 Planktothrix_phage(12.5%) tRNA,transposase NA
DBSCAN-SWA_28 4004706 : 4069618 60 Planktothrix_phage(40.0%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage