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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP013896 Bordetella pertussis strain J155 chromosome, complete genome 5 crisprs csa3,cas3,DinG,DEDDh 0 0 34 0

Results visualization

1. NZ_CP013896
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013896_1 250592-250676 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013896_2 432034-432127 Orphan NA
1 spacers
DEDDh

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013896_3 996352-996446 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013896_4 1819807-1819934 Orphan NA
1 spacers
csa3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013896_5 3431427-3431536 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 27282 : 70036 42 Synechococcus_phage(50.0%) tRNA,transposase NA
DBSCAN-SWA_2 77634 : 136108 53 Planktothrix_phage(22.22%) tRNA,transposase NA
DBSCAN-SWA_3 164894 : 225405 51 Diachasmimorpha_longicaudata_entomopoxvirus(11.11%) protease,tRNA,transposase NA
DBSCAN-SWA_4 233337 : 286925 47 Bacillus_phage(25.0%) protease,tRNA,transposase NA
DBSCAN-SWA_5 390857 : 448366 50 Orpheovirus(14.29%) transposase NA
DBSCAN-SWA_6 589371 : 650562 56 uncultured_Mediterranean_phage(40.0%) protease,transposase NA
DBSCAN-SWA_7 655886 : 702077 51 uncultured_Caudovirales_phage(18.18%) tail,tRNA,terminase,transposase NA
DBSCAN-SWA_8 708243 : 762173 46 Planktothrix_phage(50.0%) tRNA,transposase NA
DBSCAN-SWA_9 853051 : 913927 51 Vibrio_phage(25.0%) transposase NA
DBSCAN-SWA_10 934674 : 998267 58 Bacillus_virus(15.38%) transposase NA
DBSCAN-SWA_11 1024379 : 1082464 51 uncultured_Mediterranean_phage(37.5%) tRNA,transposase NA
DBSCAN-SWA_12 1086510 : 1236204 113 Planktothrix_phage(12.5%) tRNA,holin,transposase NA
DBSCAN-SWA_13 1270679 : 1327890 49 Klosneuvirus(16.67%) transposase NA
DBSCAN-SWA_14 1418123 : 1470276 45 Salmonella_phage(25.0%) tRNA,transposase NA
DBSCAN-SWA_15 1514201 : 1582287 57 Streptococcus_virus(11.11%) tRNA,transposase NA
DBSCAN-SWA_16 1618236 : 1673827 47 Brazilian_cedratvirus(25.0%) transposase NA
DBSCAN-SWA_17 1831593 : 1890863 51 Klosneuvirus(40.0%) protease,tRNA,transposase NA
DBSCAN-SWA_18 1901103 : 1945426 45 Staphylococcus_phage(25.0%) transposase NA
DBSCAN-SWA_19 1975199 : 2039568 51 Vibrio_phage(20.0%) transposase NA
DBSCAN-SWA_20 2171097 : 2228375 49 Synechococcus_phage(14.29%) tRNA,transposase NA
DBSCAN-SWA_21 2474958 : 2533202 54 Planktothrix_phage(28.57%) tRNA,transposase NA
DBSCAN-SWA_22 2575480 : 2641980 56 uncultured_Caudovirales_phage(40.0%) transposase NA
DBSCAN-SWA_23 2670095 : 2707507 39 Planktothrix_phage(33.33%) transposase NA
DBSCAN-SWA_24 2806634 : 2870126 55 Diachasmimorpha_longicaudata_entomopoxvirus(20.0%) transposase NA
DBSCAN-SWA_25 2893547 : 2957295 56 uncultured_Mediterranean_phage(22.22%) protease,transposase NA
DBSCAN-SWA_26 2968289 : 3010574 41 Bacillus_virus(20.0%) transposase NA
DBSCAN-SWA_27 3122617 : 3186452 56 Pseudomonas_phage(30.0%) protease,tRNA,transposase NA
DBSCAN-SWA_28 3234596 : 3248784 15 Erwinia_phage(100.0%) protease,transposase NA
DBSCAN-SWA_29 3267207 : 3329272 48 Tupanvirus(12.5%) integrase,tRNA,holin,transposase attL 3260601:3260619|attR 3333359:3333377
DBSCAN-SWA_30 3381029 : 3434770 48 Staphylococcus_phage(33.33%) transposase NA
DBSCAN-SWA_31 3440925 : 3500223 47 Acinetobacter_phage(27.27%) tRNA,transposase NA
DBSCAN-SWA_32 3515161 : 3573234 47 Planktothrix_phage(12.5%) tRNA,transposase NA
DBSCAN-SWA_33 3705357 : 3839332 116 uncultured_Mediterranean_phage(10.34%) integrase,tRNA,transposase attL 3751050:3751067|attR 3795689:3795706
DBSCAN-SWA_34 4005445 : 4070357 60 Planktothrix_phage(40.0%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage