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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP013897 Bordetella pertussis strain J159 chromosome, complete genome 5 crisprs csa3,cas3,DinG,DEDDh 0 0 30 0

Results visualization

1. NZ_CP013897
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013897_1 250590-250674 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013897_2 432033-432126 Orphan NA
1 spacers
DEDDh

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013897_3 996351-996445 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013897_4 1819807-1819934 Orphan NA
1 spacers
csa3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013897_5 3432488-3432597 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 27282 : 70036 42 Synechococcus_phage(50.0%) transposase,tRNA NA
DBSCAN-SWA_2 77634 : 136108 53 Planktothrix_phage(22.22%) transposase,tRNA NA
DBSCAN-SWA_3 164893 : 225403 51 Diachasmimorpha_longicaudata_entomopoxvirus(11.11%) transposase,protease,tRNA NA
DBSCAN-SWA_4 233335 : 286923 47 Bacillus_phage(25.0%) transposase,protease,tRNA NA
DBSCAN-SWA_5 390856 : 448365 50 Orpheovirus(14.29%) transposase NA
DBSCAN-SWA_6 589370 : 650562 56 uncultured_Mediterranean_phage(40.0%) transposase,protease NA
DBSCAN-SWA_7 655886 : 703125 52 uncultured_Caudovirales_phage(18.18%) transposase,tail,terminase,tRNA NA
DBSCAN-SWA_8 709291 : 763221 46 Planktothrix_phage(50.0%) transposase,tRNA NA
DBSCAN-SWA_9 885810 : 953786 56 Bacillus_phage(33.33%) transposase NA
DBSCAN-SWA_10 997315 : 1069832 60 Enterococcus_phage(14.29%) transposase,tRNA NA
DBSCAN-SWA_11 1073585 : 1135662 53 Catovirus(20.0%) transposase,holin,tRNA NA
DBSCAN-SWA_12 1153232 : 1219752 54 Erysipelothrix_phage(33.33%) transposase,tRNA NA
DBSCAN-SWA_13 1270680 : 1327891 49 Klosneuvirus(16.67%) transposase NA
DBSCAN-SWA_14 1418124 : 1470277 45 Salmonella_phage(25.0%) transposase,tRNA NA
DBSCAN-SWA_15 1514201 : 1582286 57 Streptococcus_virus(11.11%) transposase,tRNA NA
DBSCAN-SWA_16 1618235 : 1673826 47 Brazilian_cedratvirus(25.0%) transposase NA
DBSCAN-SWA_17 1778360 : 1835678 56 Tupanvirus(16.67%) transposase,tRNA NA
DBSCAN-SWA_18 1863461 : 1904152 36 Klosneuvirus(25.0%) transposase,protease,tRNA NA
DBSCAN-SWA_19 1915356 : 1963713 45 Klosneuvirus(16.67%) transposase NA
DBSCAN-SWA_20 1975209 : 2039578 51 Vibrio_phage(20.0%) transposase NA
DBSCAN-SWA_21 2171106 : 2220759 43 Synechococcus_phage(15.38%) transposase,tRNA NA
DBSCAN-SWA_22 2477065 : 2535309 54 Planktothrix_phage(28.57%) transposase,tRNA NA
DBSCAN-SWA_23 2577587 : 2644087 56 uncultured_Caudovirales_phage(40.0%) transposase NA
DBSCAN-SWA_24 2808740 : 2863257 48 Diachasmimorpha_longicaudata_entomopoxvirus(20.0%) transposase NA
DBSCAN-SWA_25 2871282 : 2928068 41 uncultured_Mediterranean_phage(28.57%) transposase,protease NA
DBSCAN-SWA_26 2958454 : 3002145 41 Planktothrix_phage(33.33%) transposase NA
DBSCAN-SWA_27 3382090 : 3435831 48 Staphylococcus_phage(33.33%) transposase NA
DBSCAN-SWA_28 3441986 : 3501284 47 Acinetobacter_phage(27.27%) transposase,tRNA NA
DBSCAN-SWA_29 3516222 : 3574295 47 Planktothrix_phage(12.5%) transposase,tRNA NA
DBSCAN-SWA_30 4006506 : 4071418 60 Planktothrix_phage(40.0%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage