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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP013900 Bordetella pertussis strain J174 chromosome, complete genome 5 crisprs csa3,cas3,DinG,DEDDh 0 0 29 0

Results visualization

1. NZ_CP013900
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013900_1 250590-250674 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013900_2 432033-432126 Orphan NA
1 spacers
DEDDh

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013900_3 996531-996625 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013900_4 1819984-1820111 Orphan NA
1 spacers
csa3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013900_5 3433707-3433816 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 27282 : 78584 49 Synechococcus_phage(25.0%) tRNA,transposase NA
DBSCAN-SWA_2 107426 : 175252 56 Bacillus_phage(22.22%) tRNA,transposase NA
DBSCAN-SWA_3 178634 : 236270 48 Klosneuvirus(14.29%) tRNA,transposase,protease NA
DBSCAN-SWA_4 250684 : 303020 47 Bacillus_phage(25.0%) tRNA,transposase,protease NA
DBSCAN-SWA_5 390856 : 448365 50 Orpheovirus(14.29%) transposase NA
DBSCAN-SWA_6 590599 : 651791 56 uncultured_Mediterranean_phage(40.0%) transposase,protease NA
DBSCAN-SWA_7 657115 : 703306 51 uncultured_Caudovirales_phage(18.18%) tRNA,transposase,terminase,tail NA
DBSCAN-SWA_8 709472 : 763402 46 Planktothrix_phage(50.0%) tRNA,transposase NA
DBSCAN-SWA_9 885990 : 953966 56 Bacillus_phage(33.33%) transposase NA
DBSCAN-SWA_10 997495 : 1070011 59 Enterococcus_phage(14.29%) tRNA,transposase NA
DBSCAN-SWA_11 1073764 : 1135840 53 Catovirus(20.0%) holin,tRNA,transposase NA
DBSCAN-SWA_12 1153410 : 1219928 54 Erysipelothrix_phage(33.33%) tRNA,transposase NA
DBSCAN-SWA_13 1270856 : 1328067 49 Klosneuvirus(16.67%) transposase NA
DBSCAN-SWA_14 1418299 : 1470452 45 Salmonella_phage(25.0%) tRNA,transposase NA
DBSCAN-SWA_15 1514377 : 1582464 57 Streptococcus_virus(11.11%) tRNA,transposase NA
DBSCAN-SWA_16 1618413 : 1682250 53 Brazilian_cedratvirus(25.0%) transposase NA
DBSCAN-SWA_17 1831770 : 1891040 51 Klosneuvirus(40.0%) tRNA,transposase,protease NA
DBSCAN-SWA_18 1901280 : 1958777 57 Staphylococcus_phage(16.67%) transposase NA
DBSCAN-SWA_19 1974327 : 2038696 51 Vibrio_phage(20.0%) transposase NA
DBSCAN-SWA_20 2170225 : 2219878 43 Synechococcus_phage(15.38%) tRNA,transposase NA
DBSCAN-SWA_21 2510997 : 2549587 36 Planktothrix_phage(14.29%) transposase,protease NA
DBSCAN-SWA_22 2577756 : 2644256 56 uncultured_Caudovirales_phage(40.0%) transposase NA
DBSCAN-SWA_23 2672371 : 2709783 39 Planktothrix_phage(33.33%) transposase NA
DBSCAN-SWA_24 2808910 : 2929287 97 Agrobacterium_phage(16.67%) transposase,protease NA
DBSCAN-SWA_25 2959673 : 3003364 41 Planktothrix_phage(33.33%) transposase NA
DBSCAN-SWA_26 3403171 : 3448243 37 Staphylococcus_phage(20.0%) tRNA,transposase NA
DBSCAN-SWA_27 3465987 : 3518392 47 Acinetobacter_phage(37.5%) tRNA,transposase NA
DBSCAN-SWA_28 3535510 : 3589311 46 Catovirus(11.11%) tRNA,transposase NA
DBSCAN-SWA_29 4007726 : 4072638 60 Planktothrix_phage(40.0%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage