CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP017287	Klebsiella variicola strain GJ3 plasmid pKPGJ-3c, complete sequence	0 crisprs	RT	0	1
NZ_CP017286	Klebsiella variicola strain GJ3 plasmid pKPGJ-3b, complete sequence	0 crisprs	NA	0	1
NZ_CP017285	Klebsiella variicola strain GJ3 plasmid pKPGJ-3a, complete sequence	0 crisprs	NA	0	1
NZ_CP017289	Klebsiella variicola strain GJ3 chromosome, complete genome	3 crisprs	DEDDh,WYL,DinG,cas3,csa3,cas3HD,RT	1	9
NZ_CP017288	Klebsiella variicola strain GJ3 plasmid pKPGJ-3d, complete sequence	0 crisprs	DEDDh	0	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

36663 : 47447

Macacine_betaherpesvirus(25.0%)

integrase

attL 34407:34420|attR 44051:44064

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
34407:34420	attL	NA	NA	NA	NA
WP_029497485.1\|36663_37443_+\|integrase	phage integrase family protein	I3WFA4	Macacine_betaherpesvirus	7.1e-52	92.0
WP_032433931.1\|37500_37758_-	hypothetical protein	NA	NA	NA	NA
WP_032072094.1\|37885_37999_-	hypothetical protein	NA	NA	NA	NA
WP_012539983.1\|38630_39386_+	replication initiation protein RepE	I3WF20	Macacine_betaherpesvirus	1.7e-135	95.2
WP_015632469.1\|40176_41382_+	AAA family ATPase	A0A077SL49	Escherichia_phage	4.0e-163	69.6
WP_032741647.1\|41381_42356_+	ParB/RepB/Spo0J family partition protein	A0A1B0V750	Salmonella_phage	4.2e-86	55.3
WP_077138871.1\|42437_43709_-	Y-family DNA polymerase	F1C5A5	Cronobacter_phage	2.3e-148	63.2
WP_020805749.1\|43708_44140_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	3.6e-29	53.3
44051:44064	attR	NA	NA	NA	NA
WP_077138872.1\|44372_45344_+	StbA family protein	A0A222YXF2	Escherichia_phage	1.1e-73	46.8
WP_001568039.1\|45346_46018_+	plasmid partitioning/stability family protein	NA	NA	NA	NA
WP_048322267.1\|46079_46310_+	hypothetical protein	NA	NA	NA	NA
WP_001568041.1\|46745_47447_+	DNA methylase	A0A2I7RE86	Vibrio_phage	1.6e-26	36.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP017287

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

8824 : 33526

Escherichia_phage(53.85%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001067855.1\|8824_9529_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_000018329.1\|9718_10534_-	aminoglycoside O-phosphotransferase APH(3')-Ia	A0A193DTG4	Autographa_californica_nuclear_polyhedrosis_virus	6.1e-163	100.0
WP_001067834.1\|10684_11389_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	3.1e-139	99.6
WP_000219391.1\|11510_12416_+	Mph(A) family macrolide 2'-phosphotransferase	NA	NA	NA	NA
WP_000004159.1\|12412_13651_+	MFS transporter	NA	NA	NA	NA
WP_001137892.1\|13650_14235_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_001389365.1\|14727_15492_-\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7
WP_000130000.1\|15718_16024_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000184001.1\|16034_17240_-	chromate efflux transporter	NA	NA	NA	NA
WP_000083830.1\|17572_17827_+	replication regulatory protein RepA	NA	NA	NA	NA
WP_001365705.1\|18064_18139_+	RepA leader peptide Tap	NA	NA	NA	NA
WP_000130646.1\|18131_18989_+	incFII family plasmid replication initiator RepA	NA	NA	NA	NA
WP_000616807.1\|19927_20581_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_000557619.1\|20673_20931_+	type II toxin-antitoxin system antitoxin PemI	NA	NA	NA	NA
WP_001398199.1\|20863_21265_+	type II toxin-antitoxin system toxin endoribonuclease PemK	NA	NA	NA	NA
WP_001067855.1\|22575_23280_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_013188475.1\|23790_24666_+	class A extended-spectrum beta-lactamase CTX-M-65	A0A1B0VBP7	Salmonella_phage	6.8e-152	98.9
WP_013362812.1\|24700_25669_+\|transposase	IS5-like element IS903B family transposase	A0A1B0VFY5	Salmonella_phage	1.6e-186	100.0
WP_001067855.1\|27419_28124_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_014839980.1\|28509_28926_+	fosfomycin resistance glutathione transferase FosA3	Q2LI91	Bacillus_phage	2.0e-08	35.6
WP_014839979.1\|28930_29449_-	hypothetical protein	NA	NA	NA	NA
WP_001067855.1\|29514_30219_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_001235713.1\|30454_31012_+	recombinase family protein	Q1MVP4	Enterobacteria_phage	7.0e-94	100.0
WP_050190632.1\|31194_32055_+	class A beta-lactamase TEM-215	Q1MVP3	Enterobacteria_phage	5.1e-160	99.7
WP_001067858.1\|32821_33526_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.2e-138	99.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP017289

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP017289_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017289_1

751077-751188

Orphan

Consensus_repeat	Method
TAAAAAAGGCAACTTGCGTTGCCTTTTTGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP017289_1

>merge|NZ_CP017289|1|751077-751188|CRISPRCasFinder
TAAAAAAGGCAACTTGCGTTGCCTTTTTGCATTTACCTTGCCCTCACCCCAACCCTCTCCCAATGGGAGAGGGAGCAAACAATAAAAAAGGCAACTTGCGTTGCCTTTTTGC

>NZ_CP017289|1|1|751077-751188|CRISPRCasFinder
TAAAAAAGGCAACTTGCGTTGCCTTTTTGC	ATTTACCTTGCCCTCACCCCAACCCTCTCCCAATGGGAGAGGGAGCAAACAA
TAAAAAAGGCAACTTGCGTTGCCTTTTTGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017289.1\|WP_032732481.1\|746646_747294_-\|YtjB-family-periplasmic-protein	unknown	unknown	gnl\|CDD\|236885
NZ_CP017289.1\|WP_064142903.1\|745630_746647_-\|lipoate--protein-ligase-LplA	unknown	unknown	gnl\|CDD\|179655
NZ_CP017289.1\|WP_004146033.1\|741215_742016_+\|deoxyribose-phosphate-aldolase	unknown	unknown	gnl\|CDD\|235387
NZ_CP017289.1\|WP_022065752.1\|742129_743452_+\|thymidine-phosphorylase	unknown	unknown	gnl\|CDD\|180276
NZ_CP017289.1\|WP_049153333.1\|758956_760381_+\|two-component-system-sensor-histidine-kinase-CreC	unknown	unknown	gnl\|CDD\|236846
NZ_CP017289.1\|WP_002887800.1\|748379_749762_+\|DNA-repair-protein-RadA	unknown	unknown	gnl\|CDD\|273067
NZ_CP017289.1\|WP_012542919.1\|747398_748370_+\|phosphoserine-phosphatase	unknown	unknown	gnl\|CDD\|182988
NZ_CP017289.1\|WP_008807518.1\|755113_755443_+\|trp-operon-repressor	unknown	unknown	gnl\|CDD\|179289
NZ_CP017289.1\|WP_002887789.1\|744830_745550_+\|purine-nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|180275
NZ_CP017289.1\|WP_008807516.1\|756058_756706_+\|2,3-diphosphoglycerate-dependent-phosphoglycerate-mutase-GpmB	unknown	unknown	gnl\|CDD\|179583
NZ_CP017289.1\|WP_049153336.1\|760441_761800_+\|cell-envelope-integrity-protein-CreD	unknown	unknown	gnl\|CDD\|236960
NZ_CP017289.1\|WP_012968984.1\|751191_752859_-\|energy-dependent-translational-throttle-protein-EttA	unknown	unknown	gnl\|CDD\|236992
NZ_CP017289.1\|WP_012542916.1\|758267_758957_+\|two-component-system-response-regulator-CreB	unknown	unknown	gnl\|CDD\|236838
NZ_CP017289.1\|WP_008807517.1\|755429_755945_-\|inosine/xanthosine-triphosphatase	unknown	unknown	gnl\|CDD\|235336
NZ_CP017289.1\|WP_077139034.1\|753087_755025_+\|murein-transglycosylase	unknown	unknown	gnl\|CDD\|183236
NZ_CP017289.1\|WP_012542917.1\|757781_758255_+\|protein-CreA	unknown	unknown	gnl\|CDD\|236752
NZ_CP017289.1\|WP_016160264.1\|743504_744728_+\|phosphopentomutase	unknown	unknown	gnl\|CDD\|235430
NZ_CP017289.1\|WP_008807515.1\|756702_757572_-\|MDR-efflux-pump-AcrAB-transcriptional-activator-RobA	unknown	unknown	gnl\|CDD\|185076
NZ_CP017289.1\|WP_002887802.1\|749783_751016_+\|multifunctional-transcriptional-regulator/nicotinamide-nucleotide-adenylyltransferase/ribosylnicotinamide-kinase-NadR	unknown	unknown	gnl\|CDD\|236151
NZ_CP017289.1\|WP_077139033.1\|740034_740820_+\|TatD-family-hydrolase	unknown	unknown	gnl\|CDD\|171118

Protein	Function_ID	Function_description	E-value
NZ_CP017289.1\|WP_032732481.1\|746646_747294_-\|YtjB-family-periplasmic-protein	gnl\|CDD\|236885	PRK11246, PRK11246, YtjB family periplasmic protein.	6.63302e-147
NZ_CP017289.1\|WP_064142903.1\|745630_746647_-\|lipoate--protein-ligase-LplA	gnl\|CDD\|179655	PRK03822, lplA, lipoate-protein ligase A; Provisional.	0
NZ_CP017289.1\|WP_004146033.1\|741215_742016_+\|deoxyribose-phosphate-aldolase	gnl\|CDD\|235387	PRK05283, PRK05283, deoxyribose-phosphate aldolase; Provisional.	0
NZ_CP017289.1\|WP_022065752.1\|742129_743452_+\|thymidine-phosphorylase	gnl\|CDD\|180276	PRK05820, deoA, thymidine phosphorylase; Reviewed.	0
NZ_CP017289.1\|WP_049153333.1\|758956_760381_+\|two-component-system-sensor-histidine-kinase-CreC	gnl\|CDD\|236846	PRK11100, PRK11100, sensory histidine kinase CreC; Provisional.	0
NZ_CP017289.1\|WP_002887800.1\|748379_749762_+\|DNA-repair-protein-RadA	gnl\|CDD\|273067	TIGR00416, DNA_repair_protein_RadA_homolog, DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus (SP:P45266) and in Listeria monocytogenes (SP:Q48761) . for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)). [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_CP017289.1\|WP_012542919.1\|747398_748370_+\|phosphoserine-phosphatase	gnl\|CDD\|182988	PRK11133, serB, phosphoserine phosphatase; Provisional.	0
NZ_CP017289.1\|WP_008807518.1\|755113_755443_+\|trp-operon-repressor	gnl\|CDD\|179289	PRK01381, PRK01381, trp operon repressor.	2.25263e-51
NZ_CP017289.1\|WP_002887789.1\|744830_745550_+\|purine-nucleoside-phosphorylase	gnl\|CDD\|180275	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase.	7.43873e-174
NZ_CP017289.1\|WP_008807516.1\|756058_756706_+\|2,3-diphosphoglycerate-dependent-phosphoglycerate-mutase-GpmB	gnl\|CDD\|179583	PRK03482, PRK03482, phosphoglycerate mutase GpmB.	6.63469e-161
NZ_CP017289.1\|WP_049153336.1\|760441_761800_+\|cell-envelope-integrity-protein-CreD	gnl\|CDD\|236960	PRK11715, PRK11715, cell envelope integrity protein CreD.	0
NZ_CP017289.1\|WP_012968984.1\|751191_752859_-\|energy-dependent-translational-throttle-protein-EttA	gnl\|CDD\|236992	PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed.	0
NZ_CP017289.1\|WP_012542916.1\|758267_758957_+\|two-component-system-response-regulator-CreB	gnl\|CDD\|236838	PRK11083, PRK11083, DNA-binding response regulator CreB; Provisional.	4.24436e-156
NZ_CP017289.1\|WP_008807517.1\|755429_755945_-\|inosine/xanthosine-triphosphatase	gnl\|CDD\|235336	PRK05074, PRK05074, non-canonical purine NTP phosphatase.	7.98477e-112
NZ_CP017289.1\|WP_077139034.1\|753087_755025_+\|murein-transglycosylase	gnl\|CDD\|183236	PRK11619, PRK11619, lytic murein transglycosylase; Provisional.	0
NZ_CP017289.1\|WP_012542917.1\|757781_758255_+\|protein-CreA	gnl\|CDD\|236752	PRK10756, PRK10756, protein CreA.	4.50228e-120
NZ_CP017289.1\|WP_016160264.1\|743504_744728_+\|phosphopentomutase	gnl\|CDD\|235430	PRK05362, PRK05362, phosphopentomutase; Provisional.	0
NZ_CP017289.1\|WP_008807515.1\|756702_757572_-\|MDR-efflux-pump-AcrAB-transcriptional-activator-RobA	gnl\|CDD\|185076	PRK15121, PRK15121, MDR efflux pump AcrAB transcriptional activator RobA.	0
NZ_CP017289.1\|WP_002887802.1\|749783_751016_+\|multifunctional-transcriptional-regulator/nicotinamide-nucleotide-adenylyltransferase/ribosylnicotinamide-kinase-NadR	gnl\|CDD\|236151	PRK08099, PRK08099, multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR.	0
NZ_CP017289.1\|WP_077139033.1\|740034_740820_+\|TatD-family-hydrolase	gnl\|CDD\|171118	PRK11449, PRK11449, metal-dependent hydrolase.	2.80539e-149

>NZ_CP017289.1|WP_002887802.1|749783_751016_+|multifunctional-transcriptional-regulator/nicotinamide-nucleotide-adenylyltransferase/ribosylnicotinamide-kinase-NadR
MSSFDYLKSAIKQKGCTLQQVAEASGMTKGYLSQLLNAKIKSPSAQKLEALHRFLGLEFPRRQKSVGVVFGKFYPLHTGHIYLIQRACSQVDELHIIMGYDDTRDRELFEESAMSQQPTVPDRLRWLLQTFKYQKNIRIHAFNEEGMEPYPHGWDVWSHGIRAFMSEKGIEPNRIYTSEEADAPQYLEHLGIETVLIDPKRTFMNISGGQIRENPFRYWEYIPTEVKPFFVRTVAILGGESSGKSTLVNKLANIFNTTSAWEYGRDYVFSHLGGDEMALQYSDYDKIALGHAQYIDFAVKYANKVAFIDTDFVSTQAFCLKYEGREHPFVQALIDEYRFDLVILLENNTPWVADGLRSLGSSVDRKEFQSLLVSLLKENEIEFVHVKESDYDARFLRCVELVKQLMGEQG
>NZ_CP017289.1|WP_002887800.1|748379_749762_+|DNA-repair-protein-RadA
MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEMRIAASPQVARNERLSGYAGNAGVSKVQKLSDISLEALPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAEGMKTLYVTGEESLQQVAMRAHRLGLPTANLNMLSETSIEQICQIADEEKPQLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEITSGSSVMVVWEGTRPLLVEIQALVDHSMMSNPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAANVPKKVPEGMQIFGVKKLSDALSVFDDL
>NZ_CP017289.1|WP_012542919.1|747398_748370_+|phosphoserine-phosphatase
MPNSLTWCDLPEDVSLWPGLPLSLSGDEVMPLDYHAGRSGWLLYGRGLNKRRLTDWQRELGAALVIVASWVVEDYQVIRLAGSLTPRATRLAHEAGLDVAPLGKIPHLRTPGLLVMDMDSTAIQIECIDEIAKLAGTGELVSEVTERAMRGELDFTASLRQRVATLKDADATILLQVRDALPLMPGLAQLVLKLETLGWKVAIASGGFTFFAEYLRDKLHLDAVFANELEIRDGKLTGNVLGDIVDAKYKANTLRKLAEKYEIPTAQTVAIGDGANDLPMIKAAGLGIAYHAKPKVNEQAEVTIRHADLMGVFCILSGSMNQK
>NZ_CP017289.1|WP_032732481.1|746646_747294_-|YtjB-family-periplasmic-protein
MVRAKLKFRLHRAVIVLICLALLVALMQGASWFSQNSQKQRNPQLEELARTLAQQVVLNLVPLMRSETPDEKRINQLLTQLTHNSRVLDAGVYDEQGDLVTRSGESVEVRDRLALDGKKAGGYFNQQIVEPVPGKNGPLGYLRLTLDTHTLATEAKQVDNTTNILRLMLLLSLAIGVVLTRTLLQGKRTRWQQSPFLLTANKPVEDEDDEKKGNL
>NZ_CP017289.1|WP_064142903.1|745630_746647_-|lipoate--protein-ligase-LplA
MSTLRLLLSDSYDPWFNLAVEECIFRQMPATQRVLFLWRNADTVVIGRAQNPWKECNTRRMEEDHVRLARRSSGGGAVFHDLGNTCFTFMAGKPEYDKTVSTAIVLAALNSLGVTAEASGRNDLVVKTDSGDRKVSGSAYRETMDRGFHHGTLLLNADLSRLANYLNPDQKKLQAKGITSVRGRVANLVDLLPGITHQHICEAIQEAFFSHYGERVDAEVISPDNTPDLPNFAETFARQSSWEWNFGQAPAFSHLLDERFRWGGVELHFDVEKGHITRTQAFTDSLNPAPLEALAARLVGCQYRAEVLQQQCEALVGDFPEQEAELKELSAWMAGAVR
>NZ_CP017289.1|WP_002887789.1|744830_745550_+|purine-nucleoside-phosphorylase
MATPHINAEMGDFADVVLMPGDPLRAKHIAETFLEDVREVNNVRGMLGFTGTYKGRKISVMGHGMGIPSCSIYTKELITDFGVKKIIRVGSCGAVREDVKLRDVVIGMGACTDSKVNRLRFKDHDFAAIADFGMVRNAVDAAKALGVDARVGNIFSADLFYTPDPSMFDVMEKYGILGVEMEAAGIYGVAAEFGAKALTICTVSDHIRTHEQTTAAERQTTFNDMIKIALESVLLGDKE
>NZ_CP017289.1|WP_016160264.1|743504_744728_+|phosphopentomutase
MKRAFIMVLDSFGIGATEDADRFGDVGADTLGHIAEACAKGEADNGRKGPLNLPNLTRLGLVKAHEGSTGKIAAGMDGNAEVIGAYAWAHELSSGKDTPSGHWEIAGVPVLFDWGYFSDHENSFPQELLDKLVKRANLPGYLGNCHSSGTVILDQLGEEHMKTGKPIFYTSADSVFQIACHEETFGLDKLYELCEIAREELTEGGYNIGRVIARPFIGDKAGNFQRTGNRHDLAVEPPAPTVLQKLVDEKNGHVVSVGKIADIYANCGITKKVKATGLDALFDATIKEMKEAGDETIVFTNFVDFDSSWGHRRDVAGYAAGLELFDRRLPELMELVGEDDILILTADHGCDPTWTGTDHTREHIPVLVYGPKVKPGSLGHRETFADIGQTIAKYFGTSDMEYGKAMF
>NZ_CP017289.1|WP_022065752.1|742129_743452_+|thymidine-phosphorylase
MFLAQEIIRKKRDGHALSDEEIRFFINGIRDNTISEGQIAALAMTIFFHDMSMPERVSLTMAMRDSGTVLNWKSLNLNGPIVDKHSTGGVGDVTSLMLGPMVAACGGYVPMISGRGLGHTGGTLDKLEAIPGFDIFPDDNRFREIIKDVGVAIIGQTSSLAPADKRFYATRDITATVDSIPLITASILAKKLAEGLDALVMDVKVGSGAFMPTYELSAALAEAIVGVANGAGVRTTALLTDMNQVLASSAGNAVEVREAVQFLTGEYRNPRLFDVTMALCVEMLISGKLAADDAEARAKLQAVLENGKAAEVFGRMVAAQKGPTDFVENYDHYLPTAMLSKAVYADTEGFISAMDTRALGMAVVSMGGGRRQASDTIDYSVGFTDMARLGDHVDGQRPLAVIHAKDENSWQEAAKAVKAAIKLDDKAPEITPTVYRRITE
>NZ_CP017289.1|WP_004146033.1|741215_742016_+|deoxyribose-phosphate-aldolase
MTPAEYEMTDLKASSLRALKLMDLTTLNDDDTNEKVIALCHQAKTPVGNTAAVCIYPRFIPIARKTLNEQGTPDIRIATVTNFPHGNDDIDIALAETRAAIAYGADEVDVVFPYRALIAGNEQVGFELVKACKEACAAANVLLKVIIETGELKEEALIRKASEISIKAGADFIKTSTGKVPVNATPESARIMMEVIRDMGVEKTVGFKPAGGVRSAEDAQQFLAIADELFGADWADSRHYRFGASSLLASLLKALGHGDGKSASSY
>NZ_CP017289.1|WP_077139033.1|740034_740820_+|TatD-family-hydrolase
MSHRFIDTHCHFDFPPFAEDETASLARAAQVGVGQIIVPAISAARFNRVLALAAQHEALYAALGMHPIVIEQHADEGLAQLERCLSLRPPKLVAVGEIGLDLYRDDPQFDRQQALLEEQLRLAKRYDLPVVLHSRRTHDKLAMLLKKHALPRTGVVHGFAGSLQQAERFVQLGYKIGVGGTITYPRASKTREVMARLPLSALLLETDAPDMPLNGFQGQPNRPEQVARVFDALCELRAEPAPTIEAAVMANTKSLFSALAG
>NZ_CP017289.1|WP_012968984.1|751191_752859_-|energy-dependent-translational-throttle-protein-EttA
MAQFVYTMHRVGKVVPPKRHILKNISLSFFPGAKIGVLGLNGAGKSTLLRIMAGIDTEIEGEARPQPGIKIGYLPQEPQLNPEHTVRESVEEAVAEVVNALKGLDEVYAKYAEPDADFDKLAAQQGKFEEIIQAHDGHNLNVQLERAADALRLPDWDAKIANLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLERFLHDFEGTVVAITHDRYFLDNVAGWILELDRGEGIPWEGNYSSWLEQKDQRLAQEASQEAARRKSIEKELEWVRQGAKGRQSKGKARLARFEELNNVEYQKRNETNELFIPPGARLGDKVLEVSHLRKSYGDRVLIDDLSFSVPKGAIVGIIGPNGAGKSTLFRMMSGQEQPDSGTITLGETVKLASVDQFRDAMDNSKTVWEEVSGGLDIMKIGNTEMPSRAYVGRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVGGNVLLLDEPTNDLDIETLRALENALLEFPGCAMVISHDRWFLDRIATHILDYQDEGKVEFFEGNFTEYEEYKKRTLGADALEPKRIKYKRIAK
>NZ_CP017289.1|WP_077139034.1|753087_755025_+|murein-transglycosylase
MEKAKKMAWRLLAASVGLLTLSQLAHADSLDEQRNRYAQIKQAWDNRQMDVVDQLMPTLSTYPLYPYLQYRQITDDLMNQPALVVKNFIDANPTLPPARSLRSRFVNELARRSDWRGLLAFSPDKPTSTEAQCNYYYAKLSVGQSQEAWSGAKDLWLTGKNQPGACEPLFSAWRDSGQQDPLAYLERIRLAMKAGNIGLVKSLAQQMPGNYQSIASAVVALANDPNSVLTFARTTGATDFTRQVAAVAFASVARQDVENARLMIPSLVQAQQLNEDQTQELRDIVAWRLMGTDVTEEQAIWRDDAIMRSQSTPLVERRVRMALGTGDRHGLNTWLARVPMEAKEKDEWRYWQADLLLERGRDEEAQAILRSLMQQRGFYPMVAAQRLGEEYTFRIDKASGTIDPALASGPEMARVRELMYWNMDNTARTEWANLVTSRTKSQQAQLARYAFDQHWWDLSVQATIAGKLWDQLEERFPLAYNDLFARYISGKDIPQSYAMAIARQESAWNPKVRSPVGASGLMQIMPGTATHTVSMFSIPGYSGPSQLLDPETNINIGTSYLQYVYQQFGNNRIYASAAYNAGPGRVRTWQGNSAGRIDAVAFVESIPFSETRGYVKNVLSYDAYYRYFMGQQDKLFSDAEWRQRY
>NZ_CP017289.1|WP_008807518.1|755113_755443_+|trp-operon-repressor
MTQQSPYSAAVAEQRHQEWLRFVALLQQAYAEDLHLPLLQLMLTPDEREALGTRVRIIEELLRGEMSQRELKNELGAGIATITRGSNSLKSAPAELRQWLEQTLLASDK
>NZ_CP017289.1|WP_008807517.1|755429_755945_-|inosine/xanthosine-triphosphatase
MHHVVSATTNPAKIQAILQAFNEIFGEGSCHIESVSVESGVPEQPFGSEETRAGARNRVANARLVQPSADFWVAIEAGIDDGSTFSWVVIESADRRGEARSATLPLPEVILEQVRAGEALGPVMSQYTGIDQIGRKEGAIGVFTGGKLTRSSVYHQAVVLALSPFHNAIYR
>NZ_CP017289.1|WP_008807516.1|756058_756706_+|2,3-diphosphoglycerate-dependent-phosphoglycerate-mutase-GpmB
MLQVYLVRHGETQWNAERRIQGQSDSPLTAHGERQAWQVGERARTLGITHIITSDLGRTRRTAEIIAEACGCSVIADARLRELDMGVLEKRHIDSLSDEEEGWRRQLVNGTPDGRIPQGESMQELSERMHAALASCLELPAGSRPLLVSHGIALGCLVSTILGLPAYAERRLRLRNCSISRVDYQQSPWLASGWVVETAGDVSHLDAPAMDELQR
>NZ_CP017289.1|WP_008807515.1|756702_757572_-|MDR-efflux-pump-AcrAB-transcriptional-activator-RobA
MDQAGIIRDLLSWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFSLTPALYRRSPDWSSFGMRPPLRLGEFTLPKHEFVALPTTQLLGVTQSYTCKLEEISDFRNQMRVQFWRDFLGNSPSIPPVLYGLHEPRPSLEKDDEQEVFYTTALTPEMANGHLQNAHPVTLEGGEYVMFTYEGLGTGLQEFILTVYGTCMPMLNLTRRKGLDIERFYPEDENRDQATPIQLRCEYLIPIRR
>NZ_CP017289.1|WP_012542917.1|757781_758255_+|protein-CreA
MKYKKFAMGLLLLAGCQMAQAEQIGSVDTVFKWLGPDHKIVVEAFDDPDVQNVTCYISRAKTGGIKGGLGLAEDTSDAAISCQQVGPIELTDKIKNGKSQGDVVFQKRTSLVFKKLQVVRFYDAKRNALVYLTYSDKVVDGSPKNAISAVPIMPWNK
>NZ_CP017289.1|WP_012542916.1|758267_758957_+|two-component-system-response-regulator-CreB
MQQPRIWLVEDEQSIADTLVYMLQQEGFQVTVFGRGLPALEAAAHQAPDVAILDVGLPDISGFELCRRLLTRYPALPVLFLTARSDEVDKLLGLEIGADDYIAKPFSPREVCARVRTVLRRLQKFAAPSPVVRVGEFVLDEQAASISWFGQPLNLTRYEFLLLKTLLHAPGRVFSRQQLMELVWSDAWESLDRTVDTHIKTLRAKLRAVNPEVTPINTHRGMGYSLGRG
>NZ_CP017289.1|WP_049153333.1|758956_760381_+|two-component-system-sensor-histidine-kinase-CreC
MRIGMRLLLGYFLIVAIAAWFVLSIFVQEVKPGVRGATEGTLNDTATLLAALAREDLLAANPQQGRLAQAFQQLNQQPINAHIGGIKKVRNEYRVYLTDARGKVVFDSSGQATGQDYSRWNDVWLTLRGQYGARSTRSDPHDETSSVMYIAAPVMDKGRIIGVLSVGKPNLAMTPVIKRSERRILWAGGALLGIALLIGVGVVWWINFSIGKLVRYADSVTAERPLPLPEVGSSELRKLAQALESMRVKLEGKNAIENYVYDLTHELKSPLAAIRGAAEILREGPPPEVAARFTDNILAQNTRMQLLVERLLQQARLESRLEIKPQPVSIDALYQRLTEERDIALAAKAITLRWRESGMLVNGDGELLAQALGNLLDNAIDFTPQGGEIALAAEKRNEEVQLSVIDNGCGIPDYALERIFERFYSLPREDGHKSSGLGLAFVREVARLHHGDINLHNRPEGGVVATLRLHRPFT
>NZ_CP017289.1|WP_049153336.1|760441_761800_+|cell-envelope-integrity-protein-CreD
MLKSPLFWKITTLIGCVVLLSLPLMMVRELINERADYRSEVVDAIEQSTSGSQKLAGPLIAIPITETLTRMENQKEVNYQRSWEYYWLPESLAVTGKQTVESRRVGIYSGQVWHNALQIKASFDPLRLAALRKTNIVLGPPRLVVSVGDARGIGAIHAPEVNGNVLSVEPGLGISGDGAGIHMPMPALAEDNKPLEIAFSLELNGTGEFSLVPIGRNSELQLTSNWPHPGFLGSFLPTQREVSAAGYRAHWQSSWFANDMGSYFKDDMEIPWSRLPAFSADVMTLADQYQLTDRATKYAILLIGLTFMAFFVFESLTHRPLHPMQYLLVGLSLVLFYLVLLALSEHVGFTAAWLAASLSGAVMNGVYLQAVLRGWRNSLLFVAALLLLDGVMWFLLHSEDSALLLGTGVLVLALSVLMFLTRRVDWYALSLPKGSAPPPPAADDDKLRLWKE

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Crispr_ID: NZ_CP017289_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017289_2

1485063-1485169

Orphan

Consensus_repeat	Method
TGCTCCCTCTCCCTGTGGGAGAGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP017289_2

>merge|NZ_CP017289|2|1485063-1485169|CRISPRCasFinder
TGCTCCCTCTCCCTGTGGGAGAGGGTTGGGGTGAGGGCAAGGTAAACGCAAAAAGGCAATGACAATGGCCTTTTTTAGGGTGTGCTCCCTCTCCCTATGGGAGAGGG

>NZ_CP017289|2|2|1485063-1485169|CRISPRCasFinder
TGCTCCCTCTCCCTGTGGGAGAGGG	TTGGGGTGAGGGCAAGGTAAACGCAAAAAGGCAATGACAATGGCCTTTTTTAGGGTG
TGCTCCCTCTCCCTATGGGAGAGGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017289.1\|WP_008805596.1\|1482489_1483554_+\|sugar-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|380528
NZ_CP017289.1\|WP_012968719.1\|1483656_1484898_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227601
NZ_CP017289.1\|WP_047666085.1\|1494843_1496106_-\|cytosine-permease	unknown	unknown	gnl\|CDD\|236821
NZ_CP017289.1\|WP_023339773.1\|1479971_1481474_+\|sugar-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224053
NZ_CP017289.1\|WP_064160465.1\|1490349_1491159_-\|inositol-monophosphatase	unknown	unknown	gnl\|CDD\|223559
NZ_CP017289.1\|WP_008805591.1\|1477053_1477458_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NZ_CP017289.1\|WP_012968720.1\|1481470_1482469_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224093
NZ_CP017289.1\|WP_032734954.1\|1478719_1479808_-\|oxidoreductase	unknown	unknown	gnl\|CDD\|182570
NZ_CP017289.1\|WP_008805598.1\|1485195_1486395_-\|S-methyl-5-thioribose-kinase	unknown	unknown	gnl\|CDD\|236561
NZ_CP017289.1\|WP_012968723.1\|1477918_1478662_-\|3-oxoacyl-ACP-reductase-FabG	unknown	unknown	gnl\|CDD\|235500
NZ_CP017289.1\|WP_008805600.1\|1487585_1488854_-\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|366031
NZ_CP017289.1\|WP_002893903.1\|1476859_1477057_+\|YbdD/YjiX-family-protein	unknown	unknown	gnl\|CDD\|225434
NZ_CP017289.1\|WP_008805607.1\|1496557_1497166_+\|methylthioribulose-1-phosphate-dehydratase	unknown	unknown	gnl\|CDD\|236415
NZ_CP017289.1\|WP_064144041.1\|1486496_1487525_+\|S-methyl-5-thioribose-1-phosphate-isomerase	unknown	unknown	gnl\|CDD\|273112
NZ_CP017289.1\|WP_008805590.1\|1474661_1476767_+\|carbon-starvation-protein-CstA	unknown	unknown	gnl\|CDD\|184976
NZ_CP017289.1\|WP_022065145.1\|1477432_1477735_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|224937
NZ_CP017289.1\|WP_162494476.1\|1491280_1492231_-\|substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|380501
NZ_CP017289.1\|WP_012968715.1\|1488880_1490239_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340870
NZ_CP017289.1\|WP_077139079.1\|1492376_1493615_-\|cytosine-deaminase	unknown	unknown	gnl\|CDD\|181713
NZ_CP017289.1\|WP_012542475.1\|1493611_1494847_-\|PucR-family-transcriptional-regulator-ligand-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|377939

Protein	Function_ID	Function_description	E-value
NZ_CP017289.1\|WP_008805596.1\|1482489_1483554_+\|sugar-ABC-transporter-substrate-binding-protein	gnl\|CDD\|380528	cd06305, PBP1_methylthioribose_binding-like, similar to methylthioribose-binding protein of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein (PBP1) superfamily. Proteins similar to methylthioribose-binding protein of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.	4.03307e-122
NZ_CP017289.1\|WP_012968719.1\|1483656_1484898_+\|hypothetical-protein	gnl\|CDD\|227601	COG5276, COG5276, Uncharacterized conserved protein [Function unknown].	2.26518e-148
NZ_CP017289.1\|WP_047666085.1\|1494843_1496106_-\|cytosine-permease	gnl\|CDD\|236821	PRK11017, codB, cytosine permease; Provisional.	0
NZ_CP017289.1\|WP_023339773.1\|1479971_1481474_+\|sugar-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224053	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism].	0
NZ_CP017289.1\|WP_064160465.1\|1490349_1491159_-\|inositol-monophosphatase	gnl\|CDD\|223559	COG0483, SuhB, Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family [Carbohydrate transport and metabolism].	1.79317e-72
NZ_CP017289.1\|WP_008805591.1\|1477053_1477458_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	4.5247e-10
NZ_CP017289.1\|WP_012968720.1\|1481470_1482469_+\|ABC-transporter-permease	gnl\|CDD\|224093	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism].	3.65981e-69
NZ_CP017289.1\|WP_032734954.1\|1478719_1479808_-\|oxidoreductase	gnl\|CDD\|182570	PRK10586, PRK10586, putative oxidoreductase; Provisional.	0
NZ_CP017289.1\|WP_008805598.1\|1485195_1486395_-\|S-methyl-5-thioribose-kinase	gnl\|CDD\|236561	PRK09550, mtnK, methylthioribose kinase; Reviewed.	0
NZ_CP017289.1\|WP_012968723.1\|1477918_1478662_-\|3-oxoacyl-ACP-reductase-FabG	gnl\|CDD\|235500	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated.	1.08671e-86
NZ_CP017289.1\|WP_008805600.1\|1487585_1488854_-\|histidine-phosphatase-family-protein	gnl\|CDD\|366031	pfam00328, His_Phos_2, Histidine phosphatase superfamily (branch 2). The histidine phosphatase superfamily is so named because catalysis centers on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches.The smaller branch 2 contains predominantly eukaryotic proteins. The catalytic functions in members include phytase, glucose-1-phosphatase and multiple inositol polyphosphate phosphatase. The in vivo roles of the mammalian acid phosphatases in branch 2 are not fully understood, although activity against lysophosphatidic acid and tyrosine-phosphorylated proteins has been demonstrated.	3.61435e-59
NZ_CP017289.1\|WP_002893903.1\|1476859_1477057_+\|YbdD/YjiX-family-protein	gnl\|CDD\|225434	COG2879, COG2879, Uncharacterized small protein [Function unknown].	1.33159e-37
NZ_CP017289.1\|WP_008805607.1\|1496557_1497166_+\|methylthioribulose-1-phosphate-dehydratase	gnl\|CDD\|236415	PRK09220, PRK09220, methylthioribulose 1-phosphate dehydratase.	1.57474e-138
NZ_CP017289.1\|WP_064144041.1\|1486496_1487525_+\|S-methyl-5-thioribose-1-phosphate-isomerase	gnl\|CDD\|273112	TIGR00512, methylthioribose-1-phosphate_isomerase_predicted, S-methyl-5-thioribose-1-phosphate isomerase. The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA. [Amino acid biosynthesis, Aspartate family].	1.18822e-149
NZ_CP017289.1\|WP_008805590.1\|1474661_1476767_+\|carbon-starvation-protein-CstA	gnl\|CDD\|184976	PRK15015, PRK15015, carbon starvation protein CstA.	0
NZ_CP017289.1\|WP_022065145.1\|1477432_1477735_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|224937	COG2026, RelE, Cytotoxic translational repressor of toxin-antitoxin stability system [Translation, ribosomal structure and biogenesis / Cell division and chromosome partitioning].	9.18558e-09
NZ_CP017289.1\|WP_162494476.1\|1491280_1492231_-\|substrate-binding-domain-containing-protein	gnl\|CDD\|380501	cd06278, PBP1_LacI-like, ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type 1 periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.	1.87085e-94
NZ_CP017289.1\|WP_012968715.1\|1488880_1490239_-\|MFS-transporter	gnl\|CDD\|340870	cd17312, MFS_OPA_SLC37, Organophosphate:Pi antiporter/Solute Carrier family 37 of the Major Facilitator Superfamily of transporters. Organophosphate:Pi antiporters (OPA) are integral membrane proteins responsible for the transport of specific organophosphates or sugar phosphates across biological membranes with the simultaneous translocation of inorganic phosphate into the opposite direction. The OPA family is also called solute carrier family 37 (SLC37) in vertebrates. Members include glucose-6-phosphate (Glc6P) transporter (also called translocase or exchanger), glycerol-3-phosphate permease, 2-phosphonopropionate transporter, phosphoglycerate transporter, as well as membrane sensor protein UhpC from Escherichia coli. UhpC is both a sensor and a transport protein; it recognizes external Glc6P and induces transport by UhpT, and it can also transport Glc6P. Vertebrates contain four SLC37 or sugar-phosphate exchange (SPX) proteins: SLC37A1 (SPX1), SLC37A2 (SPX2), SLC37A3 (SPX3), and SLC37AA4 (SPX4). The OPA/SLC37 family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	4.96428e-128
NZ_CP017289.1\|WP_077139079.1\|1492376_1493615_-\|cytosine-deaminase	gnl\|CDD\|181713	PRK09230, PRK09230, cytosine deaminase; Provisional.	0
NZ_CP017289.1\|WP_012542475.1\|1493611_1494847_-\|PucR-family-transcriptional-regulator-ligand-binding-domain-containing-protein	gnl\|CDD\|377939	pfam07905, PucR, Purine catabolism regulatory protein-like family. The bacterial proteins found in this family are similar to the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR). PucR is thought to be a transcriptional activator involved in the induction of the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression. The other members of this family are also annotated as being putative regulatory proteins.	1.78324e-33

>NZ_CP017289.1|WP_012968719.1|1483656_1484898_+|hypothetical-protein
MSALPSPEYSRNMRLIGHSDQGGRPDGVQLMVHRGFAYIGHMVSQGFSVVDVRDPTRPTTVNYIAAPPGTWNVHLQAHDDLLLVINARDLFADARFADEKVYYTRSVGDTVSDVQDKGWSAGLRIFDISTPAQPREISFLSLNGIGIHRIWYVGGRWAYVSALIDGFTDYIFLTIDLADPRKPEVAGRWWLPGMHQAGGETPDWPQGKRYALHHAIIAGDTAYGSWRDGGLTLLDVKDRTQPTLISHRNWSPPFGGGTHTALPLPDRDLLVVLDEAVLDNQEDGEKLIWLFDIREPSNPVSIATFPPPDEIDYVAKGAHFGPHNLHENRPGSFVSSTLIFATYQNAGVRAYDISNPYRPLETGALVPAAPKTMMDTRPGRPQVIQSCDVFVDAQGIIYSTDYNGGLSVIEYLG
>NZ_CP017289.1|WP_008805596.1|1482489_1483554_+|sugar-ABC-transporter-substrate-binding-protein
MKKIALSLMTLGLLQSTAALATAPTPVPAAIAEHSGPIRIAVIRNLGSDDNTTQFVSGALQEGKKLGFKISTFLSNGDDAKFQDFVNQAISQKYDGIILSQGRDPYSTALVKKAVDAGIKVAVFDTAVSGEIPGVTVSQQDDASLTELSFGQLVKDFNGKANIVKLWVAGFPPMERRQAAYQTLLKQNPGIKELESIGAVSSDVQGDTANKVGAILAKYPKGKIDAIWGTWDAFSQGAYKALKENGRTEIKLYSIDISNQDLQLMREAGSPWKVSVAVDPKLIGATNVRLIANKIAGEPTPATYDFKAAAIPQALLAAQPGAVNVASLGKIIPGWGQTEDFIAPWFATLEAKNK
>NZ_CP017289.1|WP_012968720.1|1481470_1482469_+|ABC-transporter-permease
MSKALAVNATVSGRQRFFDFLYKWGMLLTVVLLVAVFGLASDNFLDPFNIINILRSIAIVTVIAIGVSISLTIGGFDLSVGSTASLANALVISLFVWHGLGTTEAILITLALCTLVGLFNAFLIVVLRIPDMLATLASLFVIQGVAMTYSYGGSITENMVLPSGEMAEGTIPAGFGALGQVPTIVIIMLVVTLVAQLALSFTTHGRRMYAIGGNPEAARLSGLRITRYKVAAYVIASLLAGLGGILLASRIGSSQVNAGGGYLMDAVAAAWIGFSLAGSGKPNALGTLVGAVILGVLSNGLVMLSVPYYAMDIIKGLVLAGALALTYFQRRT
>NZ_CP017289.1|WP_023339773.1|1479971_1481474_+|sugar-ABC-transporter-ATP-binding-protein
MSANRLEMHNISLAFSGFQALNKVDFTLHGGSVHALTGANGAGKSTLMAVLCGTHAHYEGEVTINNQPVIIRSPRDAKQLGIHLVQQEVDVALVPGLSIAENIMLDRLAEPGMAFRWSRVRQLAREALAQLDVALDVRRSIDSCTLAEKQQILLARALSHHCRFLILDEPTAPLDQHESERLFAVVRRLQQQGIGVVFISHRIHELKAICDTLTVLRDGRLIESGPMAPLSGEQIVEKMLGHELSDIFPPPRPPHGEEVLLQIDGLHDEALLQDISLRLRKGEILGIAGLAGAGKTELCKALFGASKSRVQRGELNGQPWRPRDPADSVGRGLALVPEERRKEGIFIEEPIAMNLAVSADNSFSRWSLFGHRQAWRWAEEVIARLGVRATGPGQMLRRLSGGNQQKVAIGKWLRSHANVLIFDEPTKGVDVKAKTDLFMLIDGLAREGKGVIYASGEFAELVGLCDRICVLWDGRIVAEIPGAEAREETLLYYSTGGAAA
>NZ_CP017289.1|WP_032734954.1|1478719_1479808_-|oxidoreductase
MSNSDIRVVPGPANYFSHPGSLERLSDFFSADQLSRAVWVYGERALAGAEPFLPAAFYLPEAKKIRFPGHCSERDVAALVQASGDDRAVVIGVGGGALLDSAKVLARRLGVPLVAIPTIAATCAAWTPLSVWYSDAGQALNFEIFDDANFLVLVEPRIILNAPAEYLLAGIGDTLAKWYEAVVLAPQPEALPLTVRLGINGALAIRDVLLASSETALADQSRGDLTQAFRDVVEAIIAGGGMVGGLGERYTRVAAAHAVHNGLTVLPQTDKFLHGTKVAYGILVQSALLAQDDVLAQLVQAYQRFNLPTTLAALEVDINNRTELDRVIAHTLRPGESIHYLPVTLTPEVLRAAFEKVEYFSR
>NZ_CP017289.1|WP_012968723.1|1477918_1478662_-|3-oxoacyl-ACP-reductase-FabG
MQIDLTGKKALVTGASRGLGRAIALSLARAGADVVITYEKSADKAQAVADEIKALGRHGEAVQADSASAQAIQDAVTHAARSLGGLDILVNNAGIARGGPLESMTLADIDALINVNIRGVVIATQEALVHMADGGRIINIGSCLANRVAMPGIAVYAMTKSALNALTRGLARDLGPRGITVNLVHPGPTNSDMNPEDGEQAEAQRQMIAVGHYGQPEDIAAAVTFLASPAAGQISGTGLDVDGGLNA
>NZ_CP017289.1|WP_022065145.1|1477432_1477735_-|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MKIVWSKTADKPFSKIDNRYKSRIKSRLEKMDDKASPISDIKKLSSPENHYRLRLGDYRVIYTFGDPPGDTCYVVAVKRRTTTTYLHEEDTEYDYSVHQG
>NZ_CP017289.1|WP_008805591.1|1477053_1477458_-|helix-turn-helix-transcriptional-regulator
MTIQYIKDEEGKDQYVVIPYSDYFRMRLALLEYDDEDESDWEDIPYESDIYDNVMLPGEVCDVMHKENVSLQAAWRILRGLSQQEVAAKLGISQSAVSQLEALDSRPQKRTREKLAAIYGCTQEQISLYLPKEG
>NZ_CP017289.1|WP_002893903.1|1476859_1477057_+|YbdD/YjiX-family-protein
MFDTLSKAGKYLGQAAKMMIGVPDYDNYVEHMRITHPDQTPMTYEEFFRERQDARYGGKGGAKCC
>NZ_CP017289.1|WP_008805590.1|1474661_1476767_+|carbon-starvation-protein-CstA
MNNSGKYLIWTLLSVIGAFALGYIALNRGEQINALWIVVAAVCVYLIAYRFYGLYIAKTVLGVDPTRMTPAVRHNDGLDYVPTDKKVLFGHHFAAIAGAGPLVGPVLAAQMGYLPGMIWILAGVVLAGAVQDFMVLFVSTRRDGRSLGELVKEEMGPTAGVLALVACFMIMVIILAVLAMIVVKALTHSPWGTYTVAFTIPLAIFMGIYIRYLRPGRIGEVSVIGLVMLVFAIISGGWVAESPTWAPWFDYTGVQLTWILVGYGFVAAVLPVWLLLAPRDYLSTFLKIGTIVGLAIGILIMRPTLTMPALTKFVDGTGPVWSGNLFPFLFITIACGAVSGFHALISSGTTPKMLANEGQACFIGYGGMLMESFVAIMALVAACIIDPGVYFAMNSPMAVLAPAGTTDVVASAAQVVSGWGFSITPDTLHQIASEVGEQSIISRAGGAPTLAVGMAYILHGSLGGLMDVSFWYHFAILFEALFILTAVDAGTRAARFMLQDLLGVISPGLKKTSSLPANLLATALCVLAWGYFLHQGVVDPLGGINTLWPLFGIANQMLAGMALMLCAVVLFKMKRQRYAWVALLPTSWLLICTLTAGWQKSFSPDTKVGFLAIANKFQAMIDSGNIPPQYTESQLAQLVFNNRLDAGLTIFFMIVVVVLALFSIKTALAALKEDKPTAKETPYQAMPADAQTITAQAKRAH
>NZ_CP017289.1|WP_008805598.1|1485195_1486395_-|S-methyl-5-thioribose-kinase
MSQYHTFTAHDAVAYAQQFAGIDNPSELVSAQEVGDGNLNLVFKVFDRQGVSRAIVKQALPYVRCVGESWPLTLDRARLEAQTLVAHYQHSPQHTVKIHHFDPELAVMVMEDLSDHRIWRGELIANVYYPQAARQLGDYLAQVLFHTSDFYLHPHEKKAQVAQFSNPAMCEITEDLFFNDPYQIHERNNYPAELEADVAALRDDAQLKLAVAALKHRFFAHAEALLHGDIHSGSIFVAEGSLKAIDAEFGYFGPIGFDIGTAIGNLLLNYCGLPGQLGIRDAAAAREQRLNDIHQLWTTFAERFQALAAEKTRDAALAYPGYASAFLKKVWADAVGFCGSELIRRSVGLSHVADIDTIQDDAMRHECLRHAITLGKALIVLAERIDSVDELLARVRQYS
>NZ_CP017289.1|WP_064144041.1|1486496_1487525_+|S-methyl-5-thioribose-1-phosphate-isomerase
MQTLQTTSLRVSENQLFILDQQALPQEKRWLAADNVALLVDHIHALRVRGAPLIGLSSSLLLALLAQRGLNRDALQQALETLRAARPTAVNLMNNLDRMKQALAREDYPQALEAEALRLVEEDKQLCDRIAEAGSALVKPGSRLLTHCNTGGLATAGVGTALGVIALAHRQGKVASVWVDETRPLLQGGRLTAWELGELGVPYQLITDSMAASLMAQGQVDAVWVGADRIAANGDVANKIGTYSLAVLAHYHQIPFYVAAPQTTLDRYCPNGAAIPIEQRAAAEVTGVAGSFGAVQWAPTGAAVYNPAFDVTPAGLVSGWVLDSGVVTPAQVAAGAFAPDNG
>NZ_CP017289.1|WP_008805600.1|1487585_1488854_-|histidine-phosphatase-family-protein
MMPARHQGLLRLFIACALPLLALQSAAAADWQLEKVVELSRHGIRPPTAGNREAIEAATGRPWTEWTTHDGELTGHGYAAVVNKGREEGQHYRQLGLLQAGCPTAESIYVRASPLQRTRATAQALVDGAFPGCGVAIHYVSGDADPLFQTDKFAATQTDPARQLAAVKEKAGDLAQRRQALAPAIQLLQQAVCQADKPCPIFDTPWQVEQSKSGKTTISGLSVMANMVETLRLGWSENLPLSQLAWGKITQARQITALLPLLTENYDLSNDVLYTAQKRGSVLLNAMLDGVKPEANPNVRWLLLVAHDTNIAMVRTLMNFSWQLPGYSRGNIPPGSSLVLERWRNAKSGERYLRVYFQAQGLDDLRRLQTPDAQHPMLRQEWRQPGCRQTDVGTLCPFQAAITALGQRIDRSSAPAVAMVLP
>NZ_CP017289.1|WP_012968715.1|1488880_1490239_-|MFS-transporter
MSGIIAFFRASPPKAGAAFDEQRFRRVRWQTFIAMTLAYVTFYVCRLSFTVAKSALVELGITPTELGMIGSTLFFSYAIGKLVNGFIADHANVVRYMSLGLLLSAGMNLMMGMTTNALLLAIFWGINGWAQSMGVGPCAVSLARWYGVKERGTFYGIWSTAHNIGEAVTYMVIAAVIAGFGWQMGYLSTAALGAAGVVLLVLFMHDSPQSSGFPSINVIRDEPQEEAEARGSVFKNQLLALRNPALWTLALASAFMYIDRYAVNSWGIFFLEQDKAYSTLEASGIIGVNAIAGIAGTIIAGMLSDRFFPRNRSVMAGFISLLNTAGFALMLWSPHNYYTDILAMIIFGATIGALTCFLGGLIAVDISSRKAAGAALGTIGIASYAGAGLGEFLTGIIIDKTAILENGKTLYDFSTLALFWVGTGLGSALLCFTTAAIVARRHAVERQTSFSS
>NZ_CP017289.1|WP_064160465.1|1490349_1491159_-|inositol-monophosphatase
MQSQESEALQARYRLACELAKAGAELAFEYYQQREALTVDHKGNDLQDVVSVADKRVEAFVKQRIQSAFPQDGFLGEESGTRLPDARVLWVVDPIDGTSCFLNGLHTWCLSLAIVADGEPVIGVVYDPNHRELFHALRGHGAWLNDAPIRPHPATTVKEGVMGVGTSHRVTPTDFLPFLQALLSDGGMFIRNGSGALMSAWAAAGRLIGYYEPHMNPWDALPGLVLMREAGGASNDFLAQEGIQRGNPLLLASQTLYPQLKKMIPQPLH
>NZ_CP017289.1|WP_162494476.1|1491280_1492231_-|substrate-binding-domain-containing-protein
MARLAGVSRSAVSRTFTPGASVSEKTRQKVLSAAEALGYQVNIIARTMITGSSNFIGIVTAGFDNPFRSKLLAPLVHQLALNGFMPLLMNADDPQQLAPSLKQLLSYHVAGVIITSGAPPLSLAEEYLARKIPVTLINRHADLAGCDRVCSDNAQGAKLVADLFSRRGWQQVGFIGENRENFSTRQRYEAFIARTSGMAVSSRFCDGGGYQAGYQAARELVAENPGVQALFCATDMLALGALDGLRDAPAPLPAIVGFDDIPQADWQPYQLTTVQQNTALLAHHAVDLLMTRIARFSLPSRHREVPVKLIIRHSAK
>NZ_CP017289.1|WP_077139079.1|1492376_1493615_-|cytosine-deaminase
MKIINARLRRQEALFTLDLQDGMIHRISAQAAMQSADAGDIDAQGRLAIPPFVEPHIHLDATLTAGEPEWNRSGTLFEGITRWSQRKASITPEDTRQRALKTIGMLRDFGVQHARTHVDVTDPSLAALKALLAVKQEAADLIDLQIVAFPQEGIESYPDGRGLMTRAIEMGADVVGGIPHYENTRDKGVSSVMFLMDLAQRYGRLVDVHCDEIDDPQSRFLEVLAEEARVRGMGAQVTASHTCAMGSYDNAYCSKLFRLLKASGINFISCPTESIHLQGRFDSWPKRRGVTRVAELDRAGINVCFAQDSIQDPWYPLGNGNILRILDAGLHICHMLGYDDLQRCLDFVTDNSARALCLGDNYGLAEGRPANLLILDAENDYEAVRRQARVLTSIRHGKVILQREVEHIRYPA
>NZ_CP017289.1|WP_012542475.1|1493611_1494847_-|PucR-family-transcriptional-regulator-ligand-binding-domain-containing-protein
MSLTVSELLALEGLSALRLRAGKQGLQRAVRWYYVAENEHIAEWIMGGELVFITGINHPRDEANLIQLLMEGKQRGIAGMVILTGEAYIHAIPATLIALADELGIPLIEQPYLLKMVIVTERIGTALVRSENALQSQRDILMQLVTGDYPDLQMLHQRALHQQLDFTRPLRLAALRLEGLSRLFRQFPPEQAEAWLLQAHRSVRQQLQQQLNQQGNPFPLLERSNMFLFLLPDEEGEGFQQKKWLQQWLQALADGEEGLSLLCGLSAPVRQLQGYPRALSQARQALDLCDTLRPTQRISDYQQLGFIKLLSAVSDPALLNDFMHDTLGCLIEPGRKAPWLLLETLETLLQENGNVVRAADRLGLHRNTLHQRIQRIEKLTGYPVSHPQFHLNASVALVIWRLSQNHLQDPP
>NZ_CP017289.1|WP_047666085.1|1494843_1496106_-|cytosine-permease
MSNSNDFPLVEAPAAGRKGVFSIAMVLFSFTFFTGTMFAGGKLGVSFSIVNLLWIAVIGNALLALYAASLGWIAARSGLNTVLMGRFCFGEIGSKLADFILGFAELGWYAWGTATVAISLVKILALPEALTQPLMVLFGILFCVTALVGYKGLDALSRLSVPLMFVLLMVSMYLALHHAGGWQAMTHIAPSDTMTWSAAITMVFGTFASGATQATNWTRLANSSRTAILASMGSFLIGNGLMIVAGAWCAIVYQQADIVEVLILQGLSVAAVIMLCLNLLTIQGPTIYNVSAAACHLLRSERRRTLTIAAAGVGIVLAIGGMYEMLIPFLVLLGSIIPPIGGVILADYWFARGGRYPLLQNARLPRFNWLGLGAYAAGAVVAYLSPWIAPLVGITVSALVYIVLCLLSKRQPAAVAEQEP
>NZ_CP017289.1|WP_008805607.1|1496557_1497166_+|methylthioribulose-1-phosphate-dehydratase
MWQERLAQLVTTCHWIGAKGWAPATGGNMSVRQDDTWCWLSESGRDKGSLTTEDFLQVEIATNQAPSGRKPSAETGLHTLVYRLFPEANVVLHVHTVNATVLSRIEKSDTLALQGYEMQKTLSGQHSHLDTVPVAIFDNDQDIDALAARIADYAQTRPLRYGFLLRGHGLTCWGKDIQEARRQLEGLEFLFECELMRRRYEP

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Crispr_ID: NZ_CP017289_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017289_3

4932629-4932718

Orphan

Consensus_repeat	Method
TGGGAGAGGGAACCGTTCGGCAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP017289_3

>merge|NZ_CP017289|3|4932629-4932718|CRISPRCasFinder
TGGGAGAGGGAACCGTTCGGCACAGGCCTTGAATACCGATGCCGATCCGCCTTTCCCTCTCGCCCTTTGGGTGAGGGAACCGTTCGGCAC

>NZ_CP017289|3|3|4932629-4932718|CRISPRCasFinder
TGGGAGAGGGAACCGTTCGGCAC	AGGCCTTGAATACCGATGCCGATCCGCCTTTCCCTCTCGCCCTT
TGGGTGAGGGAACCGTTCGGCAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017289.1\|WP_060619852.1\|4926273_4927278_-\|autoinducer-2-import-system-permease-LsrD	unknown	unknown	gnl\|CDD\|184998
NZ_CP017289.1\|WP_047667003.1\|4935039_4936170_-\|23S-rRNA-(guanine(1835)-N(2))-methyltransferase-RlmG	unknown	unknown	gnl\|CDD\|184963
NZ_CP017289.1\|WP_012967192.1\|4938691_4940335_+\|glycoside-hydrolase-family-43-protein	unknown	unknown	gnl\|CDD\|350114
NZ_CP017289.1\|WP_012540508.1\|4930015_4930987_+\|transcriptional-regulator-LsrR	unknown	unknown	gnl\|CDD\|237962
NZ_CP017289.1\|WP_012540503.1\|4937695_4938562_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225117
NZ_CP017289.1\|WP_008806572.1\|4936246_4937587_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|236610
NZ_CP017289.1\|WP_008806579.1\|4944714_4945269_-\|YgjV-family-protein	unknown	unknown	gnl\|CDD\|378474
NZ_CP017289.1\|WP_012540512.1\|4922644_4924024_+\|putrescine-aminotransferase	unknown	unknown	gnl\|CDD\|183175
NZ_CP017289.1\|WP_008806577.1\|4942248_4943220_+\|TerC-family-protein	unknown	unknown	gnl\|CDD\|274743
NZ_CP017289.1\|WP_047667001.1\|4932908_4934930_+\|NADPH-dependent-2,4-dienoyl-CoA-reductase	unknown	unknown	gnl\|CDD\|239240
NZ_CP017289.1\|WP_008806578.1\|4943451_4944699_+\|serine/threonine-transporter-SstT	unknown	unknown	gnl\|CDD\|184190
NZ_CP017289.1\|WP_064144314.1\|4925263_4926277_-\|autoinducer-2-ABC-transporter-substrate-binding-protein-LsrB	unknown	unknown	gnl\|CDD\|237961
NZ_CP017289.1\|WP_012540501.1\|4940413_4940914_+\|M48-family-metallopeptidase	unknown	unknown	gnl\|CDD\|224368
NZ_CP017289.1\|WP_002917723.1\|4924071_4924368_-\|(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione-isomerase	unknown	unknown	gnl\|CDD\|182494
NZ_CP017289.1\|WP_012967199.1\|4924364_4925252_-\|3-hydroxy-5-phosphonooxypentane-2,4-dione-thiolase	unknown	unknown	gnl\|CDD\|181306
NZ_CP017289.1\|WP_004181384.1\|4921832_4922387_+\|PadR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224609
NZ_CP017289.1\|WP_012967197.1\|4927278_4928313_-\|autoinducer-2-ABC-transporter-permease-LsrC	unknown	unknown	gnl\|CDD\|185330
NZ_CP017289.1\|WP_022066317.1\|4931024_4932617_+\|autoinducer-2-kinase	unknown	unknown	gnl\|CDD\|182853
NZ_CP017289.1\|WP_012967191.1\|4940987_4941977_+\|Gfo/Idh/MocA-family-oxidoreductase	unknown	unknown	gnl\|CDD\|223745
NZ_CP017289.1\|WP_064144313.1\|4928309_4929797_-\|autoinducer-2-ABC-transporter-ATP-binding-protein-LsrA	unknown	unknown	gnl\|CDD\|185336

Protein	Function_ID	Function_description	E-value
NZ_CP017289.1\|WP_060619852.1\|4926273_4927278_-\|autoinducer-2-import-system-permease-LsrD	gnl\|CDD\|184998	PRK15038, PRK15038, autoinducer 2 ABC transporter permease LsrD.	2.41148e-145
NZ_CP017289.1\|WP_047667003.1\|4935039_4936170_-\|23S-rRNA-(guanine(1835)-N(2))-methyltransferase-RlmG	gnl\|CDD\|184963	PRK15001, PRK15001, 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG.	0
NZ_CP017289.1\|WP_012967192.1\|4938691_4940335_+\|glycoside-hydrolase-family-43-protein	gnl\|CDD\|350114	cd09000, GH43_SXA-like, Glycosyl hydrolase family 43, such as Selenomonas ruminantium beta-D-xylosidase SXA. This glycosyl hydrolase family 43 (GH43) includes enzymes that have been characterized to mainly have beta-1,4-xylosidase (beta-D-xylosidase;xylan 1,4-beta-xylosidase; EC 3.2.1.37) activity, including Selenomonas ruminantium (Xsa;Sxa;SXA), Bifidobacterium adolescentis ATCC 15703 (XylC;XynB;BAD_0428) and Bacillus sp. KK-1 XylB. They are part of an array of hemicellulases that are involved in the final breakdown of plant cell-wall whereby they degrade xylan. They hydrolyze beta-1,4 glycosidic bonds between two xylose units in short xylooligosaccharides. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. These enzymes possess an additional C-terminal beta-sandwich domain that restricts access for substrates to a portion of the active site to form a pocket. The active-site pockets comprise of two subsites, with binding capacity for two monosaccharide moieties and a single route of access for small molecules such as substrate. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller.	1.04956e-176
NZ_CP017289.1\|WP_012540508.1\|4930015_4930987_+\|transcriptional-regulator-LsrR	gnl\|CDD\|237962	PRK15418, PRK15418, transcriptional regulator LsrR; Provisional.	0
NZ_CP017289.1\|WP_012540503.1\|4937695_4938562_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	1.41737e-18
NZ_CP017289.1\|WP_008806572.1\|4936246_4937587_-\|MFS-transporter	gnl\|CDD\|236610	PRK09669, PRK09669, putative symporter YagG; Provisional.	0
NZ_CP017289.1\|WP_008806579.1\|4944714_4945269_-\|YgjV-family-protein	gnl\|CDD\|378474	pfam10688, Imp-YgjV, Bacterial inner membrane protein. This is a family of inner membrane proteins. Many of the members are YgjV protein.	1.25182e-58
NZ_CP017289.1\|WP_012540512.1\|4922644_4924024_+\|putrescine-aminotransferase	gnl\|CDD\|183175	PRK11522, PRK11522, putrescine--2-oxoglutarate aminotransferase; Provisional.	0
NZ_CP017289.1\|WP_008806577.1\|4942248_4943220_+\|TerC-family-protein	gnl\|CDD\|274743	TIGR03718, R_switched_Alx, integral membrane protein, TerC family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains TerC itself from Alcaligenes sp. plasmid IncHI2 pMER610 and from Proteus mirabilis. It also contains the alkaline-inducible E. coli protein Alx, which unlike the two TerC examples is preceded by a yybP-ykoY leader.	7.26052e-143
NZ_CP017289.1\|WP_047667001.1\|4932908_4934930_+\|NADPH-dependent-2,4-dienoyl-CoA-reductase	gnl\|CDD\|239240	cd02930, DCR_FMN, 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provides a hydrid ion to the C5 atom of substrate, and Tyr and His are proposed to form a catalytic dyad that protonates the C4 atom of the substrate and completes the reaction.	0
NZ_CP017289.1\|WP_008806578.1\|4943451_4944699_+\|serine/threonine-transporter-SstT	gnl\|CDD\|184190	PRK13628, PRK13628, serine/threonine transporter SstT; Provisional.	0
NZ_CP017289.1\|WP_064144314.1\|4925263_4926277_-\|autoinducer-2-ABC-transporter-substrate-binding-protein-LsrB	gnl\|CDD\|237961	PRK15408, PRK15408, autoinducer 2 ABC transporter substrate-binding protein LsrB.	0
NZ_CP017289.1\|WP_012540501.1\|4940413_4940914_+\|M48-family-metallopeptidase	gnl\|CDD\|224368	COG1451, COG1451, Predicted metal-dependent hydrolase [General function prediction only].	2.79808e-36
NZ_CP017289.1\|WP_002917723.1\|4924071_4924368_-\|(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione-isomerase	gnl\|CDD\|182494	PRK10486, PRK10486, (4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase.	6.90108e-61
NZ_CP017289.1\|WP_012967199.1\|4924364_4925252_-\|3-hydroxy-5-phosphonooxypentane-2,4-dione-thiolase	gnl\|CDD\|181306	PRK08227, PRK08227, 3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase.	0
NZ_CP017289.1\|WP_004181384.1\|4921832_4922387_+\|PadR-family-transcriptional-regulator	gnl\|CDD\|224609	COG1695, COG1695, Predicted transcriptional regulators [Transcription].	2.55733e-22
NZ_CP017289.1\|WP_012967197.1\|4927278_4928313_-\|autoinducer-2-ABC-transporter-permease-LsrC	gnl\|CDD\|185330	PRK15432, PRK15432, autoinducer 2 ABC transporter permease LsrC; Provisional.	0
NZ_CP017289.1\|WP_022066317.1\|4931024_4932617_+\|autoinducer-2-kinase	gnl\|CDD\|182853	PRK10939, PRK10939, autoinducer-2 (AI-2) kinase; Provisional.	0
NZ_CP017289.1\|WP_012967191.1\|4940987_4941977_+\|Gfo/Idh/MocA-family-oxidoreductase	gnl\|CDD\|223745	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only].	7.93516e-67
NZ_CP017289.1\|WP_064144313.1\|4928309_4929797_-\|autoinducer-2-ABC-transporter-ATP-binding-protein-LsrA	gnl\|CDD\|185336	PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional.	0

>NZ_CP017289.1|WP_022066317.1|4931024_4932617_+|autoinducer-2-kinase
MSYLLALDAGTGSIRAVIFDLNGRQLAVGQAEWKHLSVDNVPGSMEFDLTTNWQLACQCIRQALNAAGLSAADIQSVACCSMREGIVLYDRDGEAIWACANVDARASREVAELKEIHDYRFESEVYEVSGQTLALSAMPRLLWLAHHRPDIYRKAATITMISDWLAAKLSGELAVDPSNAGTTGMLDLFSRDWRPALLDMAGLRADMLSPVKETGTLLGAVTEAAAHESGLRAGTPVVMGGGDVQLGCLGLGVVRAGQTAVLGGTFWQQVVNLPQVRTDPQMNIRVNPHVIPGMAQAESISFFTGLTMRWFRDAFCAEEKLIAERLGVDAYSLLEEMASRVPAGSHGVMPIFSDAMHFKQWYHAAPSFINLSIDPEKCNKATLFRALEENAAIVSACNLAQISQFSGVTFESLVFAGGGSKGALWSQILSDVTGLPVRVPVVREATALGCAIAAGTGAGLYGDMASTGERLVSWHREFTPNPQHRELYQEMMSKWQTVYADQLGLVDSGLTTSMWQAPGLERRQRVAPSP
>NZ_CP017289.1|WP_012540508.1|4930015_4930987_+|transcriptional-regulator-LsrR
MSEKRITEENRYAGLALAEEELVARVAWCYYHDGLTQNDIGERLGLPRLKISRLLEKGRQSGVIRVQINSRYEGCLALESELQQRFGLKIARVLPALNTPPMNTRLGIGAAQSLMGILQPGQLLAVGFGEATMSCLQHLSGFIGSQQVRLVTLSGGVGPYMTGIGQLDAACSVSIIPAPLRVSSAEVAEILRRESSVRDVILAATAADAAVVGIGAIDQRRDATILRSGYISEGEQLMYARKGAVGDILGYFLQADGRPVEGLEIHRELLGVTLDELAQLPTIVGVAGGEEKAQAIYAALTGKRINGLVTEETTARAVLALAS
>NZ_CP017289.1|WP_064144313.1|4928309_4929797_-|autoinducer-2-ABC-transporter-ATP-binding-protein-LsrA
MKPLLEARQICKQFSGVAVLKGIDFTLGAGQVHALMGGNGAGKSTLMKIIAGVETPDSGELTIGDRAFARLSPALAHQLGIYLVPQEPMLFPNLSVRENILFRLPKRADTVARLQDKLRQLNCQINLDASASTLEVADQQMVEILRGLMREARILILDEPTASLTPGETERLFSQIRALQALDVGIVFISHKLPEIRQLASHISVMRDGAVVLSGETAAYRDEQLINAMTPVSRDHALSVTQKLWLSLPGNRRTQPQDFPVLRVEDLTGEGFIDLNLEIRAGEIVGLAGLVGSGRTEFAETLYGLRPPRAGRIWLENRDISRDSTRARLASGLVYLPEDRQVSGLFLDAPVRWNTVMFNQPSWWQQGKREAAVVERYHRALGIKLADGDQPVRTLSGGNQQKVLLARCLEANPLLLIVDEPTRGVDVSARADIYQLLKSVAAQNVAVLMISSDLDEFVGLADRVLVMHQGRYSGELARQAVTVDRMMTLAFGGQA
>NZ_CP017289.1|WP_012967197.1|4927278_4928313_-|autoinducer-2-ABC-transporter-permease-LsrC
MKTLLKNRELSAFFAIVALFVVLVALNPAYFSLQTLAMIFASSQILCLLALGATLVMLTRNIDVSVGSTVGLCAIAVGVALNNGYGLATAIAFALAIGALAGAFNGLLVVGLRIPAIVATLGTLGLYRGVMLLWTGGKWIEGLPDSLKSLSEPAFIGVSPLGWLVLALLLAGGWLLSRTAFGRDFYAVGDNLAAARQLGVAVNRTRMLAFTLNGMLAACAGIVFAAQIGFVPNQTGSGLEMKAIAACVLGGISLLGGTGTLLGAFLGAFFLTQIDTVLVLFRLPAWWNDFIAGLVLLGVLVLDGRLRQALARHQRALKYSRFQPGNKGSKQVARFPERKSKEVA
>NZ_CP017289.1|WP_060619852.1|4926273_4927278_-|autoinducer-2-import-system-permease-LsrD
MKLKLNWESALLALLIAEILLFGALNPRMLDLNMLLFSTSDFICIGIVALPLTLVIISGGIDISLGSTIGLCAIALGVMTQAAWPLWLAVSLTLLLGLLCGLFNAALIHYTGISPLVITLGTLYLYGGGALLLSGMAGATGYEGIGGFPDSFTAIANLTLAGLPLPLVLFAIITFFFWLLAHRGRFGRHLFLLGQNPRAARYAALSVNGIPYVLYGLVGVASAVAALVMVSYFGSARSDLGRDLLMPALTAAVLGGANIYGGSGSILGTALAALLVGYLQQGLQMVGIPNQVSSALSGALLVVVVMGRSLSLHREWVRATWRRLFSHRTIGAQQ
>NZ_CP017289.1|WP_064144314.1|4925263_4926277_-|autoinducer-2-ABC-transporter-substrate-binding-protein-LsrB
MKTKRILQVSALALAMSVVTAQAADRIAFIPKLVGVGFFTSGGNGAKEAGKALGVDVTYDGPTEPSVSGQVQLINNFVNQGYNAIIVSAVSPDGLCPALKRAMQRGVKVLTWDSDTKPECRSIYINQGTPQQLGGLLVEMAEKQVSKPAAKVALFYSSPTVTDQNQWVKEAKAKIEKEHPQWQIVTTQFGYNDATKSLQTAEGILKAYPDLDAIIAPDANALPAAAQAAENLKRQGVAIVGFSTPNVMRPYVERGTVKAFGLWDVVQQGKIAVNVADRLLKKGDLNVGDSVEVKDIGSLKVEPNSVQGYQYEAKGNGIVLLPERVVFSKENINNYDF
>NZ_CP017289.1|WP_012967199.1|4924364_4925252_-|3-hydroxy-5-phosphonooxypentane-2,4-dione-thiolase
MADLDDIKEGKDFGIDRPQQNTLYTLKGCGSLDWGMQSRMARIFNPHSNRTVMLAFDHGYFQGPTTGLERIDLSIAPLFADTDVLMCTRGVLRSQVPAATNKPVVLRASGGNSILSELSNECVAVAMEDALRLNVCAVAAQVYIGSEYEHQSINNIIKLVDAGNRYGMPVLAVTGVGKEMTRDARYFSLASRIAAEMGAQFVKTYFVEEGFEKVTASCPVPIVIAGGKKLPEHEALEMCWRAIDQGASGVDMGRNIFQSSAPRAMLKAVKKVVHENLNAREAYQFWQEEKQGELK
>NZ_CP017289.1|WP_002917723.1|4924071_4924368_-|(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione-isomerase
MNVTLVEINIKPERVDEFLEVFRANHEGALQEPGNLRFDVLQDPEVKTRFFIYEAYKDDEAVLAHKKTPHYLACVEKLEEMMSQPRQKRSFIGLLPQV
>NZ_CP017289.1|WP_012540512.1|4922644_4924024_+|putrescine-aminotransferase
MNRLPSSASALACSAHALNLIEKRTLDHEEMKALNQEVREYFKEHVNPGFLEYRKSVTAGGDYGAVEWQAGGLNTLVDTQGQEFIDCLGGFGIFNVGHRNPVVVSAVENQLAKQPLHSQELLDPLRAMLAKTLAALTPGKLKYSFFCNSGTESVEAAIKLAKAYQSPRGKFTFIATSGAFHGKSLGALSATAKSTFRKPFMPLLPGFRHVPFGDINAMRTMLSECKKTGDDVAAVILEPIQGEGGVILPPQGYLPAVRKLCDEFGALLILDEVQTGMGRTGKMFACEHENVQPDILCLAKALGGGVMPIGATVATEEVFSVLFDNPFLHTTTFGGNPLACAAALATINVLLTQNLPAQAAQKGDMLLDGFRLLAQEYPDLVNEVRGKGMLMAIEFVDNEIGYDFASEMFRQRVLVAGTLNNAKTIRVEPPLTLTLEQCEQVLKAARKALAALRVSVEEA
>NZ_CP017289.1|WP_004181384.1|4921832_4922387_+|PadR-family-transcriptional-regulator
MRHHHEEGRGPRGRHGDPSEHGDHGRRGGGRRQRFFGHGELRLIILDILSRSASHGYELIKEIETLTQGNYSPSPGVIYPTLDLLQDQGLISVEDDNGRKKIVISEEGKQLHAENQEHLAHIQERLQARMVGCELRRDPQMKRALENFKAVLDLKVNQQASSAAQLKQIIGIIDRAAMEISQLD
>NZ_CP017289.1|WP_047667001.1|4932908_4934930_+|NADPH-dependent-2,4-dienoyl-CoA-reductase
MSRYPSLFAPLELGFTTLKNRVLMGSMHTGLEELPDGAQRLAAFYAERARHGVALIVTGGIAPAPSGVTMAGGAVLNDASHLAHHRHITDAVHQEGGKIALQILHTGRYSYQPALVAPSALQAPINRFTPHELSHDEILMLIDDFAHCAQLAREAGYDGVEVMGSEGYLINEFLAARTNQRDDQWGGDYARRMRFAIEVVKAVRQRAGHDFIIIYRLSMLDLVNDGSTLAEVTELAKAIEAAGATIINTGIGWHEARIPTIATPVPRGAFSWVTRKLKDAVSIPLITTNRINDPQVAEDILARGDADMVSMARPFLADAEFMSKAQRDRAGEINTCIGCNQACLDRIFVGKVTSCLVNPRACHETLMPVLPANAPKRLAVVGAGPAGLAFAVNAAARGHHVTLFDALPEIGGQFNIAKQIPGKEEFHETLRYYRTMLDLHGVDLRLNTRVTADDLLTFDETILATGIAPRLPAIDGIDHPKVLSYLDVLRDKAPVGAKVAIIGCGGIGFDTAMYLSQSGVATSQDIGEFCREWGIDTSLQTAGGLHPEGPQLSKSPRQIVMLQRKASKPGEGLGKTTGWIHRATLLARGVKMIPAVSYEKIDDEGLHVTIGGERQLLAVDQVVICAGQEPRRELADPLRAAGKTVHLIGGCDVAAELDARRAIAQGTKLALAI
>NZ_CP017289.1|WP_047667003.1|4935039_4936170_-|23S-rRNA-(guanine(1835)-N(2))-methyltransferase-RlmG
MSQAELNGELFTLERFPPNAEEEALQAWEAADEYLLQQVNDVDGLTLIFNDGFGALACALAARNPVSINDSFISELATRHNLRMNGIDEESVRFQDSLSPLPAAPALVLIKVPKQLALLEQQLRALREVVTPETRIIAAAKARDVHNSTLALFEKILGTTTTSLAWKKARLIHCVFTAPKLADAPQTYSWKLDGTPWTIHNHANVFARSGLDIGARFFLQHLPSDLEGEIADLGCGNGVIGLQALAQNPNASVMFTDESHMAVASSRLNVERNLPDDIARCEFMVNNSLSGIEPDRFTAILCNPPFHQQHAITDHIAWQMFNDARRSLKYGGELYVVGNRHLDYFRKLKRAFGNCTTIATNNKFVILKATKVREQR
>NZ_CP017289.1|WP_008806572.1|4936246_4937587_-|MFS-transporter
MNTARISIKEKFSYGLGDTGCNLVWQTVMLFMAWFYTDVFGLSPAHMGTMFLAVRVLDAVTDVLMGAVADRTRTKYGQFRPYILWFAIPFGVLCCLTFYTPDLGYSGKLIYAYVSYTLLSLVYTAINVPYCAMINNISNDSRERVSLQSWRFALSTLGGLIVSLTALPLVAWLGKGNLQNGYFYTMMVMGALSIVLFFICFGLTKERYSTDITANNQSSILDDLKTLLANKDWRILFTLNVVNLIAVLFKGGTTLYYVNNIMGRADLGSLLLTTTLASGVVGAMLSPFIFKNIDKVKGFKLSMALEAVLLIAMYFVPAGNVAAIFTLVIIINIIQLAATPLQWSMLSDIIDAEEKRSGKKLSGIVFSTNLFAIKLGIAIGGALVGYLLAWGDYVGGAAQQSASALQMIKLLFTLFPGVLVALLIVIMNRYSLDDKRLSHMAQESGR
>NZ_CP017289.1|WP_012540503.1|4937695_4938562_+|helix-turn-helix-transcriptional-regulator
MSDESPVFEKIPVGAGELFTLRADNINDFNGINVVPHFHMMDELMWFRESGGSYSIGDEKFTIKNNTLVYVPALLIHEMTLPPAASHKRYLMQFEKEWLEGYDLSLPAAHCGAVVYLSGEEAERLELLLSWCSEFSDFSDSLFRSLMQSVLLHAFNRLKDSVPVTERTHHRYLSELIELLQVINANENFEMTTEEAARRCQWSKSWFSRTFKSAFGISFKKFMLLRKLNIAVNLLTNTDLKISDISQSAGFTDSAYFCLKFKEMMNDTPQSFRHKIRSTDAVGSRAEK
>NZ_CP017289.1|WP_012967192.1|4938691_4940335_+|glycoside-hydrolase-family-43-protein
MIQNPVFRGFNPDPCICRRGDDYYVAVSSFEWFPGLPVYHSRDLKHWQLLTHVLTDDNNPDLKKLPSAKGIWAPSLTWCEEEKLFYVIYGVMNSMNSRYFDVDNYLITAEEITGPWSAPVYLHSAGFDASILHDHDGRKWIVSLEWETREGYEKPGAICLVEYSPQTHSVIGYPQRIWHGGTDRGCIEAPHLTRRGDYYYLMVAEGGTGYGHSVTMARATEVAGPYQGDPLNPIVTSWPENFNERKDTGHLKPHYFNPETYLQKAGHGSYVETPTGEVWLTHLCSRPFRQELRCPLGRETAIQRMEWSEDGWLRLAAGGHLAQHQVEGSRLPPHPFPPKADLDDFDEPRVDNAFYAPRIHFQRFTCLTRKAGYLALRGQESLSSLNKVSLLAKKLTSVYANISTKMDFNPEIYQHSAGLVLYYDNMNYLFLHKTWDETSGAAQLAIIYMDNGERHDDPQKIRLAEGEIYLAIAINGREVQCSWSVDGEHYHPIGAVYDTSHFSDEYSRYGEFTGAFVGMACVDSMLHRKEALFDFFCYRADEDAIIE
>NZ_CP017289.1|WP_012540501.1|4940413_4940914_+|M48-family-metallopeptidase
MSTLPYLHGYPESLLSQVTALIEQDRLGEVLQKRYPQGHDVNSDKALYQYTQDLKARFLRGAAPINKVMYDSKIHVLNNALGLHTAISRVQGGKLKAKAEIRVATVFRDAPEAFLRMIVVHELAHLKEKDHNKAFYQLCCHMEPQYHQLEFDTRLWLTHLSLNRSA
>NZ_CP017289.1|WP_012967191.1|4940987_4941977_+|Gfo/Idh/MocA-family-oxidoreductase
MIRFAVVGTNWITKQFVDAAHETGKYKLTAIYSRSLEQAQAFANDYPVEHLFTSLDELAQSPDVDAVYIASPNSLHFPQTRLFLSHKKHVICEKPLASNLQEVEAAIALAKENNVVLFEAFKTASLPNFLLLKETLPKAGKLRKAFINYCQYSSRYQRYLDGENPNTFNPAFSNGSIMDIGFYCLASAVALWGEPRAVLATASLLDSGVDAQGTVVLSYGDFDVTLHHSKVSDSAIPSEIQGEDGTLVIEKISECQKLAFVPRGGKAQDLTQPQHINTMLYEAETFARLVETQDVNHPGLTVSRITAKLSSEIRRQTGVIFPADTQPLA
>NZ_CP017289.1|WP_008806577.1|4942248_4943220_+|TerC-family-protein
MNTVGTPLLWGGFAVVVAIMLAIDLLLQGRRGSHSMTMKQAAGWSILWVTLSLLFNAAFWWYLVQTQGRAVADPQALAFLTGYLIEKALAVDNVFVWLMLFSYFAVPPALQRRVLVYGVLGAIVLRTIMIFAGSWLISQFDWLLYVFGAFLLFTGVKMALAKEDDSGIGDKPLVRWIRSHLRMTDKIESERFFTRKNGVLFATPLLLVLILVELSDVIFAVDSIPAIFAVTTDPFIVLTSNLFAILGLRAMYFLLAGVAERFSMLKYGLSVILVFIGVKMLIVDFYHIPVAISLGVVGGILAVTLLINAWVNKQHDKQRKLPE
>NZ_CP017289.1|WP_008806578.1|4943451_4944699_+|serine/threonine-transporter-SstT
MTTRTPPSGWISRLAQGSLVKQILIGLVLGVLLALVSKPTAIAVGLLGTLFVGALKAVAPVLVLMLVMASIANHQHGQKTSIRPILFLYLLGTFSAALTAVLFSFVFPSTLHLTTAADSITPPSGIVEVLRGLLMSMVSNPIDALLNANYIGILVWAVGLGFALRHGNDTTKNLINDVSHAVTFIVKVVIRFAPLGIFGLVSSTLATTGFETLWGYAQLLLVLVGCMLLVALVINPLLVFWKIRRNPYPLVLTCLRESGVYAFFTRSSAANIPVNMALCEKLNLDRDTYSVSIPLGATINMAGAAITITVLTLAAVHTLNIPVDLPTALLLSVVASLCACGASGVAGGSLLLIPLACNMFGIPNDVAMQVVAVGFIIGVLQDSCETALNSSTDALFTAAACIAEDDQLAKNALRS
>NZ_CP017289.1|WP_008806579.1|4944714_4945269_-|YgjV-family-protein
MTAYWLAQGVGVIAFLIGITTFINRDERRFRLQLAVYSAIIGVHFFLMGAGSAGMSAGLNALRTVISLRTRSLWVMTVFILLTLILGLGKLQHAMELLPIIGTVASTWALFRCKGLTVRCVMWCSTACWVTHNLWLGSIGGTLIEGSFLIVNGLNIIRFRRMQKRGIDPFKVENAVQEESPSAR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP017289_1	1.1\|751107\|52\|NZ_CP017289\|CRISPRCasFinder	751107-751158	52	NZ_CP026279	Klebsiella oxytoca strain KONIH2 plasmid pKOR-b08d, complete sequence	30985-31036	9	0.827
NZ_CP017289_1	1.1\|751107\|52\|NZ_CP017289\|CRISPRCasFinder	751107-751158	52	NZ_CP026274	Klebsiella oxytoca strain KONIH4 plasmid pKPC-4b66, complete sequence	192406-192457	9	0.827
NZ_CP017289_1	1.1\|751107\|52\|NZ_CP017289\|CRISPRCasFinder	751107-751158	52	NZ_CP029112	Escherichia coli strain AR436 plasmid unnamed3, complete sequence	24637-24688	9	0.827
NZ_CP017289_1	1.1\|751107\|52\|NZ_CP017289\|CRISPRCasFinder	751107-751158	52	NZ_CP026205	Escherichia coli strain ECONIH5 plasmid pKPC-e3ee, complete sequence	30615-30666	9	0.827
NZ_CP017289_1	1.1\|751107\|52\|NZ_CP017289\|CRISPRCasFinder	751107-751158	52	NZ_CP019841	Enterobacter roggenkampii strain R11 plasmid pASM2, complete sequence	37764-37815	9	0.827
NZ_CP017289_1	1.1\|751107\|52\|NZ_CP017289\|CRISPRCasFinder	751107-751158	52	NZ_CP026172	Klebsiella pneumoniae strain KPNIH50 plasmid pKPN-bbef, complete sequence	137703-137754	9	0.827
NZ_CP017289_1	1.1\|751107\|52\|NZ_CP017289\|CRISPRCasFinder	751107-751158	52	NZ_CP010365	Enterobacter hormaechei subsp. oharae strain 34978 plasmid p34978-70.092kb, complete sequence	39729-39780	9	0.827
NZ_CP017289_1	1.1\|751107\|52\|NZ_CP017289\|CRISPRCasFinder	751107-751158	52	NZ_CP026398	Klebsiella pneumoniae strain KPNIH48 plasmid pKPN-edaa, complete sequence	236141-236192	9	0.827
NZ_CP017289_1	1.1\|751107\|52\|NZ_CP017289\|CRISPRCasFinder	751107-751158	52	NZ_CP008843	Klebsiella michiganensis strain M1 plasmid pKOXM1B, complete sequence	143038-143089	9	0.827
NZ_CP017289_1	1.1\|751107\|52\|NZ_CP017289\|CRISPRCasFinder	751107-751158	52	NZ_CP017452	Klebsiella sp. LTGPAF-6F plasmid unnamed2, complete sequence	83048-83099	9	0.827
NZ_CP017289_1	1.1\|751107\|52\|NZ_CP017289\|CRISPRCasFinder	751107-751158	52	NZ_CP026232	Citrobacter freundii complex sp. CFNIH4 plasmid pKPC-c9fd, complete sequence	24032-24083	9	0.827
NZ_CP017289_1	1.1\|751107\|52\|NZ_CP017289\|CRISPRCasFinder	751107-751158	52	NZ_CP010382	Enterobacter hormaechei subsp. steigerwaltii strain 34998 plasmid p34998-53.129kb, complete sequence	31846-31897	9	0.827
NZ_CP017289_1	1.1\|751107\|52\|NZ_CP017289\|CRISPRCasFinder	751107-751158	52	NZ_CP050068	Klebsiella aerogenes strain 035 plasmid p35, complete sequence	336759-336810	9	0.827
NZ_CP017289_1	1.1\|751107\|52\|NZ_CP017289\|CRISPRCasFinder	751107-751158	52	NZ_KT935446	Klebsiella pneumoniae strain Kp2964 plasmid 2964TF, complete sequence	111742-111793	9	0.827
NZ_CP017289_1	1.1\|751107\|52\|NZ_CP017289\|CRISPRCasFinder	751107-751158	52	NZ_CP035215	Klebsiella michiganensis strain M82255 plasmid pKOCBH-A, complete sequence	173224-173275	9	0.827
NZ_CP017289_1	1.1\|751107\|52\|NZ_CP017289\|CRISPRCasFinder	751107-751158	52	NZ_CP027617	Klebsiella pneumoniae subsp. ozaenae strain AR_0096 plasmid unnamed5, complete sequence	44019-44070	9	0.827
NZ_CP017289_1	1.1\|751107\|52\|NZ_CP017289\|CRISPRCasFinder	751107-751158	52	NZ_CP026184	Klebsiella pneumoniae strain KPNIH49 plasmid pKPN-af73, complete sequence	6345-6396	9	0.827
NZ_CP017289_1	1.1\|751107\|52\|NZ_CP017289\|CRISPRCasFinder	751107-751158	52	NZ_CP042547	Klebsiella michiganensis strain C52 plasmid pC52_002, complete sequence	89370-89421	9	0.827
NZ_CP017289_1	1.1\|751107\|52\|NZ_CP017289\|CRISPRCasFinder	751107-751158	52	NZ_CP032208	Klebsiella pneumoniae strain AR_0109 plasmid unnamed2, complete sequence	234939-234990	9	0.827
NZ_CP017289_1	1.1\|751107\|52\|NZ_CP017289\|CRISPRCasFinder	751107-751158	52	NZ_CP011646	Klebsiella pneumoniae strain CAV1596 plasmid pKPC_CAV1596-97, complete sequence	66852-66903	9	0.827
NZ_CP017289_1	1.1\|751107\|52\|NZ_CP017289\|CRISPRCasFinder	751107-751158	52	NZ_CP027125	Escherichia coli strain AR_0374 plasmid unnamed3	30761-30812	9	0.827

1. spacer 1.1|751107|52|NZ_CP017289|CRISPRCasFinder matches to NZ_CP026279 (Klebsiella oxytoca strain KONIH2 plasmid pKOR-b08d, complete sequence) position: , mismatch: 9, identity: 0.827

---atttaccttgccctcaccccaaccctctcccaatgggagagggagcaaacaa	CRISPR spacer
cgggctga---tgccctcaccccaaccctctcccacagggagagggagcaaacat	Protospacer
   ..* *   ************************  *****************

2. spacer 1.1|751107|52|NZ_CP017289|CRISPRCasFinder matches to NZ_CP026274 (Klebsiella oxytoca strain KONIH4 plasmid pKPC-4b66, complete sequence) position: , mismatch: 9, identity: 0.827

---atttaccttgccctcaccccaaccctctcccaatgggagagggagcaaacaa	CRISPR spacer
cgggctga---tgccctcaccccaaccctctcccacagggagagggagcaaacat	Protospacer
   ..* *   ************************  *****************

3. spacer 1.1|751107|52|NZ_CP017289|CRISPRCasFinder matches to NZ_CP029112 (Escherichia coli strain AR436 plasmid unnamed3, complete sequence) position: , mismatch: 9, identity: 0.827

---atttaccttgccctcaccccaaccctctcccaatgggagagggagcaaacaa	CRISPR spacer
cgggctga---tgccctcaccccaaccctctcccacagggagagggagcaaacat	Protospacer
   ..* *   ************************  *****************

4. spacer 1.1|751107|52|NZ_CP017289|CRISPRCasFinder matches to NZ_CP026205 (Escherichia coli strain ECONIH5 plasmid pKPC-e3ee, complete sequence) position: , mismatch: 9, identity: 0.827

---atttaccttgccctcaccccaaccctctcccaatgggagagggagcaaacaa	CRISPR spacer
cgggctga---tgccctcaccccaaccctctcccacagggagagggagcaaacat	Protospacer
   ..* *   ************************  *****************

5. spacer 1.1|751107|52|NZ_CP017289|CRISPRCasFinder matches to NZ_CP019841 (Enterobacter roggenkampii strain R11 plasmid pASM2, complete sequence) position: , mismatch: 9, identity: 0.827

---atttaccttgccctcaccccaaccctctcccaatgggagagggagcaaacaa	CRISPR spacer
cgggctga---tgccctcaccccaaccctctcccacagggagagggagcaaacat	Protospacer
   ..* *   ************************  *****************

6. spacer 1.1|751107|52|NZ_CP017289|CRISPRCasFinder matches to NZ_CP026172 (Klebsiella pneumoniae strain KPNIH50 plasmid pKPN-bbef, complete sequence) position: , mismatch: 9, identity: 0.827

---atttaccttgccctcaccccaaccctctcccaatgggagagggagcaaacaa	CRISPR spacer
cgggctga---tgccctcaccccaaccctctcccacagggagagggagcaaacat	Protospacer
   ..* *   ************************  *****************

7. spacer 1.1|751107|52|NZ_CP017289|CRISPRCasFinder matches to NZ_CP010365 (Enterobacter hormaechei subsp. oharae strain 34978 plasmid p34978-70.092kb, complete sequence) position: , mismatch: 9, identity: 0.827

---atttaccttgccctcaccccaaccctctcccaatgggagagggagcaaacaa	CRISPR spacer
cgggctga---tgccctcaccccaaccctctcccacagggagagggagcaaacat	Protospacer
   ..* *   ************************  *****************

8. spacer 1.1|751107|52|NZ_CP017289|CRISPRCasFinder matches to NZ_CP026398 (Klebsiella pneumoniae strain KPNIH48 plasmid pKPN-edaa, complete sequence) position: , mismatch: 9, identity: 0.827

---atttaccttgccctcaccccaaccctctcccaatgggagagggagcaaacaa	CRISPR spacer
cgggctga---tgccctcaccccaaccctctcccacagggagagggagcaaacat	Protospacer
   ..* *   ************************  *****************

9. spacer 1.1|751107|52|NZ_CP017289|CRISPRCasFinder matches to NZ_CP008843 (Klebsiella michiganensis strain M1 plasmid pKOXM1B, complete sequence) position: , mismatch: 9, identity: 0.827

---atttaccttgccctcaccccaaccctctcccaatgggagagggagcaaacaa	CRISPR spacer
cgggctga---tgccctcaccccaaccctctcccacagggagagggagcaaacat	Protospacer
   ..* *   ************************  *****************

10. spacer 1.1|751107|52|NZ_CP017289|CRISPRCasFinder matches to NZ_CP017452 (Klebsiella sp. LTGPAF-6F plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.827

---atttaccttgccctcaccccaaccctctcccaatgggagagggagcaaacaa	CRISPR spacer
cgggctga---tgccctcaccccaaccctctcccacagggagagggagcaaacat	Protospacer
   ..* *   ************************  *****************

11. spacer 1.1|751107|52|NZ_CP017289|CRISPRCasFinder matches to NZ_CP026232 (Citrobacter freundii complex sp. CFNIH4 plasmid pKPC-c9fd, complete sequence) position: , mismatch: 9, identity: 0.827

---atttaccttgccctcaccccaaccctctcccaatgggagagggagcaaacaa	CRISPR spacer
cgggctga---tgccctcaccccaaccctctcccacagggagagggagcaaacat	Protospacer
   ..* *   ************************  *****************

12. spacer 1.1|751107|52|NZ_CP017289|CRISPRCasFinder matches to NZ_CP010382 (Enterobacter hormaechei subsp. steigerwaltii strain 34998 plasmid p34998-53.129kb, complete sequence) position: , mismatch: 9, identity: 0.827

---atttaccttgccctcaccccaaccctctcccaatgggagagggagcaaacaa	CRISPR spacer
cgggctga---tgccctcaccccaaccctctcccacagggagagggagcaaacat	Protospacer
   ..* *   ************************  *****************

13. spacer 1.1|751107|52|NZ_CP017289|CRISPRCasFinder matches to NZ_CP050068 (Klebsiella aerogenes strain 035 plasmid p35, complete sequence) position: , mismatch: 9, identity: 0.827

---atttaccttgccctcaccccaaccctctcccaatgggagagggagcaaacaa	CRISPR spacer
cgggctga---tgccctcaccccaaccctctcccacagggagagggagcaaacat	Protospacer
   ..* *   ************************  *****************

14. spacer 1.1|751107|52|NZ_CP017289|CRISPRCasFinder matches to NZ_KT935446 (Klebsiella pneumoniae strain Kp2964 plasmid 2964TF, complete sequence) position: , mismatch: 9, identity: 0.827

---atttaccttgccctcaccccaaccctctcccaatgggagagggagcaaacaa	CRISPR spacer
cgggctga---tgccctcaccccaaccctctcccacagggagagggagcaaacat	Protospacer
   ..* *   ************************  *****************

15. spacer 1.1|751107|52|NZ_CP017289|CRISPRCasFinder matches to NZ_CP035215 (Klebsiella michiganensis strain M82255 plasmid pKOCBH-A, complete sequence) position: , mismatch: 9, identity: 0.827

---atttaccttgccctcaccccaaccctctcccaatgggagagggagcaaacaa	CRISPR spacer
cgggctga---tgccctcaccccaaccctctcccacagggagagggagcaaacat	Protospacer
   ..* *   ************************  *****************

16. spacer 1.1|751107|52|NZ_CP017289|CRISPRCasFinder matches to NZ_CP027617 (Klebsiella pneumoniae subsp. ozaenae strain AR_0096 plasmid unnamed5, complete sequence) position: , mismatch: 9, identity: 0.827

---atttaccttgccctcaccccaaccctctcccaatgggagagggagcaaacaa	CRISPR spacer
cgggctga---tgccctcaccccaaccctctcccacagggagagggagcaaacat	Protospacer
   ..* *   ************************  *****************

17. spacer 1.1|751107|52|NZ_CP017289|CRISPRCasFinder matches to NZ_CP026184 (Klebsiella pneumoniae strain KPNIH49 plasmid pKPN-af73, complete sequence) position: , mismatch: 9, identity: 0.827

---atttaccttgccctcaccccaaccctctcccaatgggagagggagcaaacaa	CRISPR spacer
cgggctga---tgccctcaccccaaccctctcccacagggagagggagcaaacat	Protospacer
   ..* *   ************************  *****************

18. spacer 1.1|751107|52|NZ_CP017289|CRISPRCasFinder matches to NZ_CP042547 (Klebsiella michiganensis strain C52 plasmid pC52_002, complete sequence) position: , mismatch: 9, identity: 0.827

---atttaccttgccctcaccccaaccctctcccaatgggagagggagcaaacaa	CRISPR spacer
cgggctga---tgccctcaccccaaccctctcccacagggagagggagcaaacat	Protospacer
   ..* *   ************************  *****************

19. spacer 1.1|751107|52|NZ_CP017289|CRISPRCasFinder matches to NZ_CP032208 (Klebsiella pneumoniae strain AR_0109 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.827

---atttaccttgccctcaccccaaccctctcccaatgggagagggagcaaacaa	CRISPR spacer
cgggctga---tgccctcaccccaaccctctcccacagggagagggagcaaacat	Protospacer
   ..* *   ************************  *****************

20. spacer 1.1|751107|52|NZ_CP017289|CRISPRCasFinder matches to NZ_CP011646 (Klebsiella pneumoniae strain CAV1596 plasmid pKPC_CAV1596-97, complete sequence) position: , mismatch: 9, identity: 0.827

---atttaccttgccctcaccccaaccctctcccaatgggagagggagcaaacaa	CRISPR spacer
cgggctga---tgccctcaccccaaccctctcccacagggagagggagcaaacat	Protospacer
   ..* *   ************************  *****************

21. spacer 1.1|751107|52|NZ_CP017289|CRISPRCasFinder matches to NZ_CP027125 (Escherichia coli strain AR_0374 plasmid unnamed3) position: , mismatch: 9, identity: 0.827

---atttaccttgccctcaccccaaccctctcccaatgggagagggagcaaacaa	CRISPR spacer
cgggctga---tgccctcaccccaaccctctcccacagggagagggagcaaacat	Protospacer
   ..* *   ************************  *****************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1788294 : 1797741

Dickeya_phage(16.67%)

protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_023297315.1\|1788294_1789410_+	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	1.3e-06	52.7
WP_023297316.1\|1789406_1791347_+	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	5.0e-38	40.5
WP_002896516.1\|1791413_1791635_-	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	1.3e-16	61.2
WP_002896520.1\|1791960_1792278_+\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	2.0e-13	45.7
WP_012542332.1\|1792308_1794588_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	3.7e-165	42.0
WP_001040187.1\|1794706_1794925_-	translation initiation factor IF-1	NA	NA	NA	NA
WP_047666244.1\|1795275_1795980_-\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_022065908.1\|1796019_1797741_-	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	A0A2R8FG22	Brazilian_cedratvirus	1.5e-14	32.8

DBSCAN-SWA_2

1894057 : 1972394

Enterobacteria_phage(43.24%)

integrase,tail,head,portal,terminase,protease,capsid,plate

attL 1935679:1935701|attR 1970877:1970899

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002898458.1\|1894057_1894717_-\|protease	FtsH protease modulator YccA	A0A2H4JFM9	uncultured_Caudovirales_phage	3.2e-37	46.6
WP_012968604.1\|1894985_1896611_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_023297339.1\|1897148_1899575_+	glycogen/starch/alpha-glucan phosphorylase	Q8B3H5	Iris_mild_mosaic_virus	5.5e-10	41.4
WP_023297340.1\|1899639_1899978_+	STAS domain-containing protein	NA	NA	NA	NA
WP_023297341.1\|1900016_1901552_-	cyclic diguanylate phosphodiesterase	NA	NA	NA	NA
WP_004179245.1\|1901954_1902971_+	iron ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_008805909.1\|1902992_1904567_+	iron ABC transporter permease	NA	NA	NA	NA
WP_023297343.1\|1904568_1905597_+	ABC transporter ATP-binding protein	Q6GZ03	Mycoplasma_phage	1.9e-12	30.1
WP_008805910.1\|1905840_1906761_+	GGDEF domain-containing protein	A0A127AWB9	Bacillus_phage	5.3e-14	30.6
WP_004183598.1\|1906757_1907591_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_004183607.1\|1907852_1908620_+	phytanoyl-CoA dioxygenase family protein	NA	NA	NA	NA
WP_008805913.1\|1908633_1908975_-	PTS fructose-like transporter subunit IIB	NA	NA	NA	NA
WP_008805914.1\|1908990_1909866_-	[formate-C-acetyltransferase]-activating enzyme	NA	NA	NA	NA
WP_077139098.1\|1909831_1912129_-	formate C-acetyltransferase	A0A1S6UAD4	Serratia_phage	1.0e-05	46.2
WP_004179264.1\|1912178_1912499_-	PTS fructose-like transporter subunit IIB	NA	NA	NA	NA
WP_032735166.1\|1912519_1913596_-	PTS fructose transporter subunit EIIC	NA	NA	NA	NA
WP_023297345.1\|1913905_1916407_+	phosphoenolpyruvate--protein phosphotransferase	A0A1V0SGR7	Hokovirus	3.9e-11	26.4
WP_008805919.1\|1916444_1917410_-	oxidoreductase	NA	NA	NA	NA
WP_077139099.1\|1917466_1918915_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_008805921.1\|1918933_1920058_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA
WP_032753974.1\|1920094_1921702_-	BCCT family transporter	NA	NA	NA	NA
WP_022065457.1\|1922234_1923320_-	tartrate dehydrogenase	NA	NA	NA	NA
WP_008805923.1\|1923402_1924365_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_008805924.1\|1924361_1925642_-	FAD-binding oxidoreductase	NA	NA	NA	NA
WP_023297349.1\|1925644_1927132_-	aldehyde dehydrogenase PuuC	NA	NA	NA	NA
WP_002898590.1\|1927452_1928010_-	HTH-type transcriptional regulator PuuR	NA	NA	NA	NA
WP_162494428.1\|1928035_1928788_-	gamma-glutamyl-gamma-aminobutyrate hydrolase	NA	NA	NA	NA
WP_008805927.1\|1929013_1930435_+	glutamine synthetase	NA	NA	NA	NA
WP_008805929.1\|1930788_1932180_+	APC family permease	NA	NA	NA	NA
WP_002898600.1\|1932299_1932422_-	small membrane protein	NA	NA	NA	NA
WP_023297351.1\|1932678_1932900_+	hypothetical protein	NA	NA	NA	NA
WP_008805931.1\|1932920_1933709_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_012542276.1\|1933824_1934274_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_023297352.1\|1934426_1935674_+	bifunctional glucose-1-phosphatase/inositol phosphatase	NA	NA	NA	NA
1935679:1935701	attL	NA	NA	NA	NA
WP_044784190.1\|1935770_1936778_-\|integrase	tyrosine-type recombinase/integrase	A0A0M4RTQ0	Salmonella_phage	1.7e-98	51.8
WP_040150881.1\|1936865_1937168_-	helix-turn-helix transcriptional regulator	Q1JS61	Enterobacteria_phage	1.9e-21	51.0
WP_004201487.1\|1937262_1937595_+	hypothetical protein	NA	NA	NA	NA
WP_087638608.1\|1937804_1937984_+	hypothetical protein	NA	NA	NA	NA
WP_004201494.1\|1937995_1938235_+	DUF4754 family protein	NA	NA	NA	NA
WP_077139494.1\|1938237_1938510_+	hypothetical protein	NA	NA	NA	NA
WP_023279602.1\|1938578_1938803_+	hypothetical protein	NA	NA	NA	NA
WP_077139100.1\|1938799_1939378_+	3'-5' exoribonuclease	A0A1Q1PW66	Pseudoalteromonas_phage	4.5e-27	38.0
WP_077139101.1\|1939386_1939614_+	hypothetical protein	A0A286S1P6	Klebsiella_phage	5.5e-05	40.6
WP_077139102.1\|1939610_1939805_+	hypothetical protein	NA	NA	NA	NA
WP_077139103.1\|1939797_1940751_+	Dam family site-specific DNA-(adenine-N6)-methyltransferase	A0A0M4QWR0	Salmonella_phage	2.1e-82	55.0
WP_158520298.1\|1940925_1941087_+	hypothetical protein	NA	NA	NA	NA
WP_077139104.1\|1941063_1941441_-	hypothetical protein	NA	NA	NA	NA
WP_077139105.1\|1941439_1944067_+	replication endonuclease	A0A0M4RTM8	Salmonella_phage	2.3e-195	52.4
WP_077139106.1\|1944063_1944297_+	hypothetical protein	NA	NA	NA	NA
WP_077139107.1\|1944964_1945696_+	hypothetical protein	NA	NA	NA	NA
WP_077139108.1\|1946151_1947198_-\|portal	phage portal protein	A0A0A7NPT9	Enterobacteria_phage	1.3e-141	69.1
WP_077139109.1\|1947197_1948919_-	helix-turn-helix domain-containing protein	A0A0A7NV54	Enterobacteria_phage	7.1e-222	64.9
WP_077139110.1\|1949078_1949912_+\|capsid	GPO family capsid scaffolding protein	A0A0A7NRY7	Enterobacteria_phage	3.2e-95	64.1
WP_077139111.1\|1949936_1950986_+\|capsid	phage major capsid protein, P2 family	A0A0M3ULA3	Salmonella_phage	7.4e-105	54.8
WP_077139112.1\|1951033_1951948_+\|terminase	terminase	B9A7B6	Serratia_phage	1.5e-85	74.5
WP_077139113.1\|1952050_1952548_+\|head	head completion/stabilization protein	B9A7B7	Serratia_phage	6.5e-59	68.5
WP_077139114.1\|1952547_1952748_+\|tail	tail protein X	A0A0A7NV57	Enterobacteria_phage	2.3e-15	66.2
WP_044784790.1\|1952738_1953020_+	hypothetical protein	B9A7B8	Serratia_phage	1.4e-18	57.1
WP_077139115.1\|1953016_1953568_+	lysozyme	Q1I0Z1	Pasteurella_virus	1.6e-29	40.8
WP_145952626.1\|1953564_1953954_+	DUF2570 domain-containing protein	NA	NA	NA	NA
WP_077139117.1\|1954098_1954557_+\|tail	phage tail protein	A0A0A7NPU6	Enterobacteria_phage	5.6e-33	48.4
WP_077139118.1\|1954553_1955195_+	phage virion morphogenesis protein	A0A0A7NV60	Enterobacteria_phage	4.5e-44	47.3
WP_077139119.1\|1955194_1955779_+\|plate	phage baseplate assembly protein V	A0A0A7NRZ3	Enterobacteria_phage	5.1e-63	63.5
WP_077139120.1\|1955775_1956141_+	GPW/gp25 family protein	A0A0A7NQ90	Enterobacteria_phage	1.0e-29	59.1
WP_077139121.1\|1956127_1957027_+\|plate	baseplate J/gp47 family protein	A0A0A7NPY5	Enterobacteria_phage	4.4e-90	60.2
WP_077139122.1\|1957019_1957616_+\|tail	phage tail protein I	A0A0A7NPV1	Enterobacteria_phage	2.1e-40	47.9
WP_158520299.1\|1957620_1959990_+	hypothetical protein	A0A1U9WR19	Escherichia_phage	2.9e-08	47.1
WP_077139124.1\|1959992_1960256_+	hypothetical protein	NA	NA	NA	NA
WP_145952627.1\|1960248_1960437_+	hypothetical protein	NA	NA	NA	NA
WP_077139125.1\|1960442_1961630_+\|tail	phage tail protein	S4TP62	Salmonella_phage	2.3e-46	52.2
WP_077139126.1\|1961729_1962584_-	hypothetical protein	NA	NA	NA	NA
WP_077139127.1\|1962858_1963347_-\|tail	phage tail protein	A0A0A7NV65	Enterobacteria_phage	4.4e-52	60.5
WP_077139128.1\|1963356_1966302_-\|tail	phage tail tape measure protein	A0A0A7NRZ9	Enterobacteria_phage	3.6e-205	43.8
WP_077139129.1\|1966282_1966423_-\|tail	GpE family phage tail protein	O80316	Escherichia_phage	2.0e-10	74.4
WP_032421199.1\|1966455_1966755_-\|tail	phage tail assembly protein	B9A7B2	Serratia_phage	7.7e-31	71.9
WP_023328126.1\|1966808_1967324_-\|tail	phage major tail tube protein	A0A0A7NPV8	Enterobacteria_phage	3.1e-64	68.8
WP_077139130.1\|1967323_1968505_-\|tail	phage tail sheath subtilisin-like domain-containing protein	A0A0A7NV69	Enterobacteria_phage	8.0e-156	69.3
WP_077139131.1\|1968658_1969813_+	phage late control D family protein	B9A7A9	Serratia_phage	9.5e-178	80.4
WP_077139132.1\|1969857_1970106_+	ogr/Delta-like zinc finger family protein	NA	NA	NA	NA
WP_077139133.1\|1970121_1970343_+	hypothetical protein	NA	NA	NA	NA
WP_077139134.1\|1970382_1970769_-	hypothetical protein	NA	NA	NA	NA
WP_008805934.1\|1970939_1971167_-	hypothetical protein	NA	NA	NA	NA
1970877:1970899	attR	NA	NA	NA	NA
WP_008805935.1\|1971187_1971784_-	NAD(P)H:quinone oxidoreductase	NA	NA	NA	NA
WP_071822048.1\|1972220_1972394_+	general stress protein	Q9KX95	Enterobacteria_phage	1.4e-05	92.6

DBSCAN-SWA_3

2091103 : 2149593

Klebsiella_phage(46.34%)

integrase,tail,tRNA,head,portal,holin,terminase,capsid

attL 2085457:2085472|attR 2139925:2139940

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2085457:2085472	attL	NA	NA	NA	NA
WP_012542211.1\|2091103_2092210_-\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
WP_008806030.1\|2092266_2092725_-	NUDIX hydrolase	NA	NA	NA	NA
WP_032729972.1\|2092741_2093392_-	23S rRNA pseudouridine(2457) synthase RluE	NA	NA	NA	NA
WP_008806032.1\|2093632_2094883_+	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	1.1e-19	92.6
WP_077139140.1\|2095001_2096129_-\|integrase	phage integrase Arm DNA-binding domain-containing protein	O21925	Phage_21	2.6e-119	58.4
WP_012542206.1\|2096109_2096355_-	excisionase	NA	NA	NA	NA
WP_077139141.1\|2096407_2098546_-	exonuclease	S4TNL0	Salmonella_phage	2.5e-99	42.7
WP_014228879.1\|2098687_2099032_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA
WP_077139142.1\|2099074_2099269_-	DUF1482 family protein	NA	NA	NA	NA
WP_040234937.1\|2099659_2099974_+	hypothetical protein	NA	NA	NA	NA
WP_014228883.1\|2100303_2100687_-	helix-turn-helix domain-containing protein	K7PH19	Enterobacteria_phage	5.1e-19	63.5
WP_023328112.1\|2100788_2101013_+	helix-turn-helix transcriptional regulator	A0A077K9X2	Edwardsiella_phage	3.0e-11	55.2
WP_048270562.1\|2101015_2101570_+	hypothetical protein	NA	NA	NA	NA
WP_012542197.1\|2101621_2102605_+	hypothetical protein	A0A0U2RT81	Escherichia_phage	3.6e-45	56.4
WP_012542196.1\|2102597_2103062_+	replication protein	A0A0U2JGJ0	Escherichia_phage	1.7e-61	70.2
WP_032754004.1\|2103075_2103516_+	PerC family transcriptional regulator	NA	NA	NA	NA
WP_032754005.1\|2103828_2105592_+	EAL domain-containing protein	NA	NA	NA	NA
WP_021462586.1\|2106038_2106266_-	DUF1737 domain-containing protein	NA	NA	NA	NA
WP_021462587.1\|2106584_2107331_-	SDR family oxidoreductase	W8CYX9	Bacillus_phage	3.0e-07	29.8
WP_021462588.1\|2107401_2108091_-	YafY family transcriptional regulator	A0A1B0RXM1	Streptococcus_phage	5.4e-11	29.8
WP_032754006.1\|2108529_2108763_+	DinI family protein	K7PM44	Enterobacteria_phage	1.3e-22	67.1
WP_077274161.1\|2109105_2109498_+	DNA-binding protein	K7PHB4	Enterobacterial_phage	6.1e-12	36.6
WP_077139143.1\|2109697_2110729_+	DUF968 domain-containing protein	S5MW46	Escherichia_phage	6.6e-98	50.1
WP_077139144.1\|2110741_2111089_+	antitermination protein	A0A0P0ZCW0	Stx2-converting_phage	4.7e-56	88.5
WP_069134952.1\|2111112_2112291_-	hypothetical protein	A0A291AUQ1	Sinorhizobium_phage	1.5e-45	29.9
WP_040234927.1\|2112280_2113312_-	nucleoid-associated protein	NA	NA	NA	NA
WP_017880269.1\|2114209_2114425_+\|holin	class II holin family protein	A5LH82	Enterobacteria_phage	7.9e-30	87.3
WP_077139145.1\|2114424_2114922_+	lysozyme	A0A1V0E5Q7	Salmonella_phage	1.5e-79	87.0
WP_012542173.1\|2114918_2115269_+	hypothetical protein	A0A0K2FIW3	Enterobacter_phage	3.5e-11	36.8
WP_145952629.1\|2116217_2116637_+	hypothetical protein	NA	NA	NA	NA
WP_032749552.1\|2116692_2116917_-	hypothetical protein	NA	NA	NA	NA
WP_162838183.1\|2117095_2117260_+	hypothetical protein	NA	NA	NA	NA
WP_032428746.1\|2117243_2117606_+	HNH endonuclease	Q6UAS2	Klebsiella_phage	1.2e-57	83.3
WP_077139147.1\|2117557_2117881_+	hypothetical protein	NA	NA	NA	NA
WP_014907818.1\|2117877_2118309_+	hypothetical protein	Q6UAS0	Klebsiella_phage	1.8e-41	61.6
WP_012542168.1\|2118557_2118992_+\|terminase	phage terminase small subunit P27 family	A0A1J0GV10	Halomonas_phage	9.4e-30	61.9
WP_014228904.1\|2118991_2120713_+\|terminase	terminase large subunit	Q7Y413	Yersinia_phage	7.2e-190	57.2
WP_020318187.1\|2120706_2120886_+	hypothetical protein	Q6UAX9	Klebsiella_phage	6.8e-11	57.9
WP_047666384.1\|2120885_2122145_+\|portal	phage portal protein	Q6UAX8	Klebsiella_phage	5.2e-222	89.3
WP_032754009.1\|2122181_2123102_+	S49 family peptidase	Q6UAX7	Klebsiella_phage	2.8e-148	87.9
WP_014228907.1\|2123179_2124466_+\|capsid	phage major capsid protein	Q6UAX6	Klebsiella_phage	4.4e-216	89.3
WP_032754010.1\|2124524_2124785_+	hypothetical protein	Q6UAX5	Klebsiella_phage	3.3e-22	63.9
WP_020317538.1\|2124765_2125083_+\|head,tail	phage gp6-like head-tail connector protein	Q6UAX4	Klebsiella_phage	1.5e-45	89.8
WP_032754011.1\|2125079_2125418_+\|head,tail	head-tail adaptor protein	Q6UAX3	Klebsiella_phage	3.1e-52	88.4
WP_032754012.1\|2125398_2125788_+	hypothetical protein	Q6UAX2	Klebsiella_phage	1.2e-55	83.7
WP_171972701.1\|2125793_2126186_+	HK97 gp10 family phage protein	Q6UAX1	Klebsiella_phage	1.0e-59	93.1
WP_014228913.1\|2126217_2126679_+\|tail	major tail shaft subunit	Q6UAX0	Klebsiella_phage	7.8e-67	83.7
WP_014228914.1\|2126736_2127102_+\|tail	phage tail protein	Q6UAW8	Klebsiella_phage	1.6e-51	89.3
WP_032754014.1\|2127334_2130691_+\|tail	phage tail tape measure protein	Q6UAW7	Klebsiella_phage	0.0e+00	87.3
WP_017880254.1\|2130690_2131029_+\|tail	phage tail protein	Q6UAW6	Klebsiella_phage	6.4e-58	89.3
WP_023289191.1\|2131025_2131781_+\|tail	phage minor tail protein L	Q6UAW5	Klebsiella_phage	2.7e-125	80.9
WP_032754016.1\|2131782_2132493_+	C40 family peptidase	Q6UAW4	Klebsiella_phage	1.4e-134	89.8
WP_077274162.1\|2132539_2133367_+	hypothetical protein	A0A0S2SY43	Pseudomonas_phage	1.8e-05	45.9
WP_032754018.1\|2133382_2133973_+\|tail	tail assembly protein	K7PHE5	Enterobacteria_phage	5.7e-78	75.4
WP_077139148.1\|2134035_2146626_+	carbohydrate binding domain-containing protein	Q6UAW1	Klebsiella_phage	0.0e+00	48.1
2139925:2139940	attR	NA	NA	NA	NA
WP_032754023.1\|2146687_2148112_+\|tail	tail fiber domain-containing protein	A0A0P0IDN1	Klebsiella_phage	2.4e-98	49.2
WP_032754025.1\|2148534_2149593_+	sensor domain-containing diguanylate cyclase	A0A127AWB9	Bacillus_phage	8.0e-14	32.2

DBSCAN-SWA_4

2339292 : 2354466

Klebsiella_phage(40.0%)

integrase

attL 2337824:2337837|attR 2350108:2350121

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2337824:2337837	attL	NA	NA	NA	NA
WP_022065867.1\|2339292_2340792_+	histidine ammonia-lyase	A0A1V0S940	Catovirus	2.3e-59	33.6
WP_004140269.1\|2340820_2341630_-	peptide ABC transporter ATP-binding protein SapF	A0A2H4PQG7	Staphylococcus_phage	2.1e-14	28.9
WP_008807804.1\|2341631_2342624_-	peptide ABC transporter ATP-binding protein SapD	NA	NA	NA	NA
WP_008807805.1\|2342623_2343514_-	peptide ABC transporter permease SapC	NA	NA	NA	NA
WP_162494433.1\|2343660_2344878_+\|integrase	site-specific integrase	K7PGY1	Enterobacteria_phage	2.5e-120	51.6
WP_040975856.1\|2345448_2345748_-	hypothetical protein	A0A1V0E5P0	Salmonella_phage	1.5e-13	55.9
WP_077139161.1\|2345855_2346323_-	hypothetical protein	NA	NA	NA	NA
WP_040975858.1\|2346356_2346770_-	helix-turn-helix domain-containing protein	A0A0M4R5D1	Salmonella_phage	9.5e-48	79.0
WP_077139162.1\|2347174_2347510_+	hypothetical protein	NA	NA	NA	NA
WP_043875398.1\|2347824_2348289_+	hypothetical protein	A0A286S298	Klebsiella_phage	1.4e-52	59.2
WP_043875397.1\|2348285_2348768_+	DUF1833 family protein	A0A286S2B1	Klebsiella_phage	1.9e-79	90.6
WP_077139163.1\|2348778_2349159_+	nitrite transporter	A0A286S2A6	Klebsiella_phage	3.8e-67	92.1
WP_077139164.1\|2349155_2352227_+	kinase	A0A286S259	Klebsiella_phage	0.0e+00	92.2
2350108:2350121	attR	NA	NA	NA	NA
WP_077139165.1\|2352282_2354466_+	hypothetical protein	J7HXC9	Pseudomonas_phage	1.8e-15	29.6

DBSCAN-SWA_5

2421457 : 2448466

Cronobacter_phage(25.0%)

plate,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_162494436.1\|2421457_2422801_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_046621187.1\|2422797_2423487_+	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_046621190.1\|2423483_2425187_+	OmpA family protein	NA	NA	NA	NA
WP_023340018.1\|2425191_2425683_+	Hcp family type VI secretion system effector	NA	NA	NA	NA
WP_077139171.1\|2425948_2428603_+	type VI secretion system ATPase TssH	K4FB40	Cronobacter_phage	1.2e-98	33.4
WP_162494480.1\|2428604_2431295_+	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	2.1e-18	31.8
WP_049152609.1\|2431291_2431708_+	DUF4431 domain-containing protein	NA	NA	NA	NA
WP_023157869.1\|2433645_2434167_+	hypothetical protein	NA	NA	NA	NA
WP_015874726.1\|2434335_2434440_+\|transposase	transposase	NA	NA	NA	NA
WP_015874727.1\|2434411_2434603_+\|transposase	transposase	NA	NA	NA	NA
WP_077274163.1\|2434653_2435448_+\|transposase	IS3 family transposase	A0A0N9SIX5	Staphylococcus_phage	2.4e-07	30.4
WP_023157866.1\|2435434_2436505_+	TIGR02594 family protein	A0A222YWL8	Escherichia_phage	3.3e-07	35.0
WP_049152832.1\|2437774_2438983_+	hypothetical protein	NA	NA	NA	NA
WP_077258941.1\|2438979_2442435_+	type VI secretion protein VasK	NA	NA	NA	NA
WP_015874732.1\|2442434_2444033_+	type VI secretion system protein TssA	NA	NA	NA	NA
WP_049152830.1\|2444063_2445119_+	PAAR domain-containing protein	NA	NA	NA	NA
WP_032739739.1\|2445115_2445586_+	hypothetical protein	NA	NA	NA	NA
WP_032739741.1\|2445662_2447417_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_032739743.1\|2447380_2448466_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA

DBSCAN-SWA_6

2678302 : 2689181

Escherichia_phage(87.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012541792.1\|2678302_2678923_-	aldolase	A0A077SK32	Escherichia_phage	5.7e-113	98.1
WP_077139200.1\|2678915_2680181_-	four-carbon acid sugar kinase family protein	A0A077SLJ7	Escherichia_phage	3.4e-229	97.4
WP_008804983.1\|2680192_2681095_-	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	1.1e-157	98.7
WP_008804982.1\|2681355_2682117_+	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	2.1e-133	99.2
WP_012968280.1\|2682134_2682995_-	class A beta-lactamase LEN-13	A0A077SL40	Escherichia_phage	3.9e-144	90.2
WP_008804980.1\|2683289_2683550_+	hypothetical protein	A0A077SK33	Escherichia_phage	3.0e-39	95.3
WP_077139201.1\|2683636_2684725_+	AAA family ATPase	A0A077SLJ9	Escherichia_phage	7.7e-206	97.8
WP_008804978.1\|2684753_2686019_-	MFS transporter	NA	NA	NA	NA
WP_077139202.1\|2686073_2689181_-	beta-galactosidase	L0N6M2	Herpes_simplex_virus	0.0e+00	59.4

DBSCAN-SWA_7

3793472 : 3808654

Bacillus_phage(18.18%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_077139363.1\|3793472_3794789_-	O9 family phosphomannomutase RfbK1	A0A127AWJ1	Bacillus_phage	2.6e-30	26.1
WP_012967599.1\|3794812_3796228_-	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	A0A1V0SH58	Hokovirus	3.1e-53	30.8
WP_008804104.1\|3797305_3798310_+	NAD-dependent epimerase	E3T4Y8	Cafeteria_roenbergensis_virus	1.2e-30	29.2
WP_004144151.1\|3798709_3798832_+	small membrane protein	NA	NA	NA	NA
WP_000704907.1\|3799254_3800421_-	UDP-glucose 6-dehydrogenase	M1I798	Paramecium_bursaria_Chlorella_virus	7.0e-112	54.7
WP_023297948.1\|3800601_3801156_-	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A291LA62	Escherichia_phage	5.0e-52	58.2
WP_044650166.1\|3801170_3802061_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	5.3e-27	32.9
WP_000676431.1\|3802092_3802962_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	9.8e-111	66.3
WP_044650165.1\|3802988_3804053_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	2.0e-105	55.0
WP_077139364.1\|3804211_3805582_-	O9 family phosphomannomutase RfbK1	A0A127AWJ1	Bacillus_phage	8.4e-32	26.0
WP_012967599.1\|3805605_3807021_-	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	A0A1V0SH58	Hokovirus	3.1e-53	30.8
WP_064160974.1\|3807247_3808654_-	NADP-dependent phosphogluconate dehydrogenase	M4QQM4	Ostreococcus_lucimarinus_virus	1.8e-37	28.5

DBSCAN-SWA_8

3850796 : 3857724

Bacillus_phage(33.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_008804077.1\|3850796_3852299_+	two-component system sensor histidine kinase BaeS	W8CYF6	Bacillus_phage	8.6e-30	28.3
WP_004201558.1\|3852295_3853018_+	two-component system response regulator BaeR	W8CYM9	Bacillus_phage	8.3e-31	33.2
WP_008804076.1\|3853336_3854698_+\|tRNA	tRNA 5-hydroxyuridine modification protein YegQ	Q6DW11	Phage_TP	1.0e-207	94.8
WP_162494462.1\|3854940_3855837_+	lipid kinase YegS	A0A1V0SBJ0	Catovirus	2.1e-15	29.8
WP_016161506.1\|3856076_3856850_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.0e-26	37.2
WP_032736203.1\|3856860_3857724_-	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	2.0e-07	22.5

DBSCAN-SWA_9

4872186 : 4890163

uncultured_Caudovirales_phage(66.67%)

capsid,tail,tRNA,portal,terminase,protease,head

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_008806537.1\|4872186_4873200_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	3.7e-109	59.5
WP_001144069.1\|4873437_4873653_+	30S ribosomal protein S21	NA	NA	NA	NA
WP_008806538.1\|4873764_4875510_+	DNA primase	A0A0K1LMQ9	Caulobacter_phage	1.2e-75	38.2
WP_008806539.1\|4875728_4877570_+	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	8.3e-35	33.7
WP_008806540.1\|4877669_4878176_-	G/U mismatch-specific DNA glycosylase	NA	NA	NA	NA
WP_071959634.1\|4878514_4879270_+	abortive infection family protein	NA	NA	NA	NA
WP_057201115.1\|4879314_4880202_-	DUF3800 domain-containing protein	NA	NA	NA	NA
WP_077139444.1\|4880417_4882079_-\|terminase	terminase large subunit	A0A2H4JB64	uncultured_Caudovirales_phage	0.0e+00	95.7
WP_004174262.1\|4882062_4882419_-\|terminase	phage terminase small subunit P27 family	A0A2H4JHS3	uncultured_Caudovirales_phage	1.6e-59	98.3
WP_032455328.1\|4882683_4883127_-	HNH endonuclease	A0A2H4JAS8	uncultured_Caudovirales_phage	7.1e-49	62.6
WP_023323295.1\|4883126_4883420_-\|head,tail	phage gp6-like head-tail connector protein	A0A2H4JD08	uncultured_Caudovirales_phage	4.2e-42	82.5
WP_004174258.1\|4883412_4883751_-\|head	phage head closure protein	A0A2H4JHK5	uncultured_Caudovirales_phage	7.3e-22	47.7
WP_004174256.1\|4883747_4884983_-\|portal	phage portal protein	A0A2H4JFJ9	uncultured_Caudovirales_phage	1.0e-233	95.9
WP_077139445.1\|4884984_4885545_-\|head,protease	HK97 family phage prohead protease	A0A2H4JB68	uncultured_Caudovirales_phage	5.0e-100	97.8
WP_004174253.1\|4885596_4886757_-\|capsid	phage major capsid protein	A0A2H4JED2	uncultured_Caudovirales_phage	6.3e-206	95.6
WP_070544411.1\|4887012_4887786_+	hypothetical protein	NA	NA	NA	NA
WP_004174250.1\|4887838_4888084_-	hypothetical protein	NA	NA	NA	NA
WP_004174245.1\|4888363_4890163_-	DNA primase	Q7M2A8	Enterobacteria_phage	5.1e-130	49.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

4. NZ_CP017285

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

15 : 38234

Burkholderia_phage(14.29%)

transposase,integrase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000845039.1\|15_1029_+\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
WP_001067855.1\|1303_2008_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_000018329.1\|2158_2974_+	aminoglycoside O-phosphotransferase APH(3')-Ia	A0A193DTG4	Autographa_californica_nuclear_polyhedrosis_virus	6.1e-163	100.0
WP_040217779.1\|3374_4643_-\|transposase	ISL3 family transposase	Q6V7R1	Burkholderia_virus	1.5e-59	34.4
WP_046499093.1\|4647_7905_-	type I restriction endonuclease subunit R	NA	NA	NA	NA
WP_046499086.1\|7908_9198_-	restriction endonuclease subunit S	NA	NA	NA	NA
WP_077138923.1\|9194_11222_-	SAM-dependent DNA methyltransferase	A0A220A2U5	Liberibacter_phage	2.1e-26	26.6
WP_077138924.1\|11364_11688_-	theronine dehydrogenase	I3UM57	Rhodobacter_phage	1.0e-12	37.2
WP_077138925.1\|11684_12413_-	plasmid SOS inhibition protein A	NA	NA	NA	NA
WP_077138926.1\|12409_12841_-	conjugation system SOS inhibitor PsiB	NA	NA	NA	NA
WP_077138927.1\|12890_14900_-	ParB/RepB/Spo0J family partition protein	G8DH78	Emiliania_huxleyi_virus	3.5e-26	30.2
WP_077138928.1\|14970_15189_-	DUF905 domain-containing protein	NA	NA	NA	NA
WP_016247540.1\|15814_16132_-	hypothetical protein	NA	NA	NA	NA
WP_008324193.1\|16166_16421_-	DNA polymerase III subunit theta	H9C187	Pectobacterium_phage	2.1e-13	50.0
WP_015493073.1\|16613_16805_-	hypothetical protein	NA	NA	NA	NA
WP_044789508.1\|16847_17354_-	antirestriction protein ArdA	A0A1I9S7Y0	Rhodococcus_phage	4.8e-09	31.8
WP_077138929.1\|17752_18532_-	hypothetical protein	NA	NA	NA	NA
WP_008455408.1\|18585_19005_-	DUF1380 domain-containing protein	NA	NA	NA	NA
WP_008455410.1\|19015_19237_-	hypothetical protein	NA	NA	NA	NA
WP_008455412.1\|19236_19914_-	DNA methylase	A0A2K9VH43	Faecalibacterium_phage	9.5e-29	37.0
WP_077138930.1\|20273_20945_+	SOS response-associated peptidase family protein	A0A2H4J5W2	uncultured_Caudovirales_phage	9.0e-80	60.4
WP_015493080.1\|21124_21547_+	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	3.1e-30	51.5
WP_077138931.1\|21546_22821_+	Y-family DNA polymerase	F1C5A5	Cronobacter_phage	4.3e-155	63.8
WP_077138932.1\|22869_24243_-	RES family NAD+ phosphorylase	NA	NA	NA	NA
WP_000143877.1\|24292_24616_-	hypothetical protein	NA	NA	NA	NA
WP_000843283.1\|24612_25050_-	hypothetical protein	NA	NA	NA	NA
WP_077138933.1\|25049_26081_-	ParB/RepB/Spo0J family partition protein	S5WII0	Leptospira_phage	2.2e-08	26.1
WP_040118447.1\|26080_26947_-	ParA family protein	NA	NA	NA	NA
WP_042005150.1\|27440_28073_+	recombinase family protein	A0A1V0E035	Clostridioides_phage	9.6e-07	31.2
WP_045358108.1\|28126_28327_+	hypothetical protein	NA	NA	NA	NA
WP_040113343.1\|28472_29402_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	Q2A0A7	Sodalis_phage	1.4e-75	53.1
WP_072094655.1\|30627_32031_+	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	9.0e-106	50.6
WP_004098817.1\|32064_33279_-	type II site-specific deoxyribonuclease	E5E3X4	Burkholderia_phage	1.2e-34	42.5
WP_001749988.1\|33518_34088_+	recombinase family protein	E5FFF9	Burkholderia_phage	5.2e-36	43.2
WP_001067855.1\|34390_35095_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_077138935.1\|35100_35340_+	hypothetical protein	NA	NA	NA	NA
WP_001553819.1\|35336_38234_-\|transposase	Tn3-like element Tn5403 family transposase	A0A1B0V7H9	Salmonella_phage	4.2e-182	37.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP017286

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP017287

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_CP017289

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

4. NZ_CP017285

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection