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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP019588 Bacillus anthracis strain SPV842_15 chromosome, complete genome 5 crisprs cas3,csa3,WYL,c2c9_V-U4,cas14k,DinG,DEDDh,cas14j 0 1 10 0
NZ_CP019589 Bacillus anthracis strain SPV842_15 plasmid pX01, complete sequence 0 crisprs RT,c2c4_V-U1,csa3 0 0 12 0

Results visualization

1. NZ_CP019588
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP019588_1 1064106-1064199 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP019588_2 1176611-1176719 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP019588_3 2720376-2720573 Orphan NA
3 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP019588_4 3098899-3099033 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP019588_5 3267257-3267359 Orphan NA
1 spacers
csa3

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP019588_4 4.1|3098926|27|NZ_CP019588|CRISPRCasFinder 3098926-3098952 27 KJ094023 Listeria phage LP-101, complete genome 3876-3902 4 0.852
NZ_CP019588_4 4.1|3098926|27|NZ_CP019588|CRISPRCasFinder 3098926-3098952 27 NC_022766 Bacillus phage Glittering, complete genome 9024-9050 5 0.815
NZ_CP019588_4 4.1|3098926|27|NZ_CP019588|CRISPRCasFinder 3098926-3098952 27 NC_003037 Sinorhizobium meliloti 1021 plasmid pSymA, complete sequence 1229260-1229286 6 0.778
NZ_CP019588_4 4.1|3098926|27|NZ_CP019588|CRISPRCasFinder 3098926-3098952 27 NZ_CP021794 Sinorhizobium meliloti strain USDA1157 plasmid psymA, complete sequence 438058-438084 6 0.778
NZ_CP019588_4 4.1|3098926|27|NZ_CP019588|CRISPRCasFinder 3098926-3098952 27 NZ_CP021809 Sinorhizobium meliloti strain Rm41 plasmid psymA, complete sequence 127169-127195 6 0.778
NZ_CP019588_4 4.1|3098926|27|NZ_CP019588|CRISPRCasFinder 3098926-3098952 27 NC_020527 Sinorhizobium meliloti 2011 plasmid pSymA, complete sequence 1227597-1227623 6 0.778
NZ_CP019588_4 4.1|3098926|27|NZ_CP019588|CRISPRCasFinder 3098926-3098952 27 NZ_CP021798 Sinorhizobium meliloti strain USDA1106 plasmid psymA, complete sequence 850854-850880 6 0.778
NZ_CP019588_4 4.1|3098926|27|NZ_CP019588|CRISPRCasFinder 3098926-3098952 27 NC_017324 Sinorhizobium meliloti BL225C plasmid pSINMEB01, complete sequence 513839-513865 6 0.778
NZ_CP019588_4 4.1|3098926|27|NZ_CP019588|CRISPRCasFinder 3098926-3098952 27 NC_018683 Sinorhizobium meliloti Rm41 plasmid pSYMA, complete sequence 498252-498278 6 0.778

1. spacer 4.1|3098926|27|NZ_CP019588|CRISPRCasFinder matches to KJ094023 (Listeria phage LP-101, complete genome) position: , mismatch: 4, identity: 0.852

cgtctttggctcttctggtttctcttc	CRISPR spacer
catttctggctcttctggtttcttttc	Protospacer
*.*.*.*****************.***

2. spacer 4.1|3098926|27|NZ_CP019588|CRISPRCasFinder matches to NC_022766 (Bacillus phage Glittering, complete genome) position: , mismatch: 5, identity: 0.815

cgtctttggctcttctggtttctcttc	CRISPR spacer
gttcaatggctcttctggtttctcatc	Protospacer
  **  ****************** **

3. spacer 4.1|3098926|27|NZ_CP019588|CRISPRCasFinder matches to NC_003037 (Sinorhizobium meliloti 1021 plasmid pSymA, complete sequence) position: , mismatch: 6, identity: 0.778

cgtctttggctcttctggtttctcttc	CRISPR spacer
cagggttggctcttctggtttctctat	Protospacer
*.   ******************** .

4. spacer 4.1|3098926|27|NZ_CP019588|CRISPRCasFinder matches to NZ_CP021794 (Sinorhizobium meliloti strain USDA1157 plasmid psymA, complete sequence) position: , mismatch: 6, identity: 0.778

cgtctttggctcttctggtttctcttc	CRISPR spacer
cagggttggctcttctggtttctctat	Protospacer
*.   ******************** .

5. spacer 4.1|3098926|27|NZ_CP019588|CRISPRCasFinder matches to NZ_CP021809 (Sinorhizobium meliloti strain Rm41 plasmid psymA, complete sequence) position: , mismatch: 6, identity: 0.778

cgtctttggctcttctggtttctcttc	CRISPR spacer
cagggttggctcttctggtttctctgt	Protospacer
*.   ******************** .

6. spacer 4.1|3098926|27|NZ_CP019588|CRISPRCasFinder matches to NC_020527 (Sinorhizobium meliloti 2011 plasmid pSymA, complete sequence) position: , mismatch: 6, identity: 0.778

cgtctttggctcttctggtttctcttc	CRISPR spacer
cagggttggctcttctggtttctctat	Protospacer
*.   ******************** .

7. spacer 4.1|3098926|27|NZ_CP019588|CRISPRCasFinder matches to NZ_CP021798 (Sinorhizobium meliloti strain USDA1106 plasmid psymA, complete sequence) position: , mismatch: 6, identity: 0.778

cgtctttggctcttctggtttctcttc	CRISPR spacer
cagggttggctcttctggtttctctat	Protospacer
*.   ******************** .

8. spacer 4.1|3098926|27|NZ_CP019588|CRISPRCasFinder matches to NC_017324 (Sinorhizobium meliloti BL225C plasmid pSINMEB01, complete sequence) position: , mismatch: 6, identity: 0.778

cgtctttggctcttctggtttctcttc	CRISPR spacer
cagggttggctcttctggtttctctat	Protospacer
*.   ******************** .

9. spacer 4.1|3098926|27|NZ_CP019588|CRISPRCasFinder matches to NC_018683 (Sinorhizobium meliloti Rm41 plasmid pSYMA, complete sequence) position: , mismatch: 6, identity: 0.778

cgtctttggctcttctggtttctcttc	CRISPR spacer
cagggttggctcttctggtttctctgt	Protospacer
*.   ******************** .

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 258555 : 266504 6 uncultured_virus(33.33%) NA NA
DBSCAN-SWA_2 297184 : 305561 8 Synechococcus_phage(33.33%) NA NA
DBSCAN-SWA_3 445989 : 476659 46 Bacillus_phage(67.5%) integrase,terminase,head,capsid,protease,tail attL 450331:450346|attR 464995:465010
DBSCAN-SWA_4 480547 : 484415 6 Bacillus_phage(66.67%) NA NA
DBSCAN-SWA_5 1838278 : 1847011 8 Bacillus_phage(66.67%) NA NA
DBSCAN-SWA_6 2156147 : 2163274 9 Bacillus_phage(71.43%) NA NA
DBSCAN-SWA_7 3446814 : 3483689 39 Bacillus_phage(31.03%) terminase,head,capsid,transposase,protease,tail,portal,holin NA
DBSCAN-SWA_8 3496027 : 3507581 21 Bacillus_phage(66.67%) integrase attL 3490120:3490136|attR 3513916:3513932
DBSCAN-SWA_9 3713988 : 3790177 90 Bacillus_phage(92.45%) integrase,head,terminase,capsid,protease,tail,portal,tRNA,holin attL 3747386:3747402|attR 3791968:3791984
DBSCAN-SWA_10 4818788 : 4861022 48 Staphylococcus_phage(26.67%) terminase,head,integrase,capsid,protease,portal,tRNA,holin attL 4809165:4809180|attR 4863473:4863488
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_CP019589
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 8486 8 Pseudomonas_phage(100.0%) NA NA
DBSCAN-SWA_2 25257 : 33056 5 Bacillus_phage(33.33%) integrase attL 21008:21024|attR 41181:41197
DBSCAN-SWA_3 99275 : 99563 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_4 112566 : 114812 2 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_5 125296 : 125629 1 Klosneuvirus(100.0%) NA NA
DBSCAN-SWA_6 133123 : 136824 2 Salmonella_phage(50.0%) transposase NA
DBSCAN-SWA_7 143778 : 146073 1 Clostridioides_phage(100.0%) NA NA
DBSCAN-SWA_8 155262 : 156306 1 Bacillus_phage(100.0%) integrase attL 147601:147615|attR 158214:158228
DBSCAN-SWA_9 160283 : 161516 1 uncultured_Caudovirales_phage(100.0%) NA NA
DBSCAN-SWA_10 167997 : 169083 1 Brevibacillus_phage(100.0%) NA NA
DBSCAN-SWA_11 172314 : 173409 1 uncultured_Caudovirales_phage(100.0%) NA NA
DBSCAN-SWA_12 176765 : 179429 1 Klosneuvirus(100.0%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage