CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP019621	Listeria monocytogenes strain 10-092876-1235 LM8 chromosome, complete genome	3 crisprs	DinG,cas3,WYL,casR,DEDDh,RT,csa3,csn2,cas2,cas1,cas9	0	10	7	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP019621_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP019621_1

557909-558263

Orphan

I-A

Consensus_repeat	Method
GTTTTAGTTACTTATTGTGAAATGTAAATT	PILER-CR
GTTTTAGTTACTTATTGTGAAATGTAAAT	CRISPRCasFinder
GTTTTAGTTACTTATTGTGAAATGTAAATT	CRT

5 spacers

The CRISPR arrays of NZ_CP019621_1

>merge|NZ_CP019621|1|557909-558263|PILER-CR,CRISPRCasFinder,CRT
GTTTTAGTTACTTATTGTGAAATGTAAATTTTATTACCCCTAATTATACACGTTGTGACACGCCCCCGTTTTAGTTACTTATTGTGAAATGTAAATATTTCCATCTTTCTGTAACAAACTTGTAACACAAAAAGTTTTAGTTACTTATTGTGAAATGTAAATTCAACTAAATATTTGCCAGCTCCCTGAAAGTCACCGTTTTAGTTACTTATTGTGAAATGTAAATTTCGCCATGACGAAATCTAGCGCTTGTCCTACTAAGTTTTAGTTACTTATTGTGAAATGTAAATTAAACAAGTGCTTCTGGCAATACCAACGTTCCATCATTTTAGTTACTTATTATGAAATGTAAATT

>NZ_CP019621|1|1|557909-558263|PILER-CR
GTTTTAGTTACTTATTGTGAAATGTAAATT	TTATTACCCCTAATTATACACGTTGTGACACGCCCCC
GTTTTAGTTACTTATTGTGAAATGTAAATA	TTTCCATCTTTCTGTAACAAACTTGTAACACAAAAA
GTTTTAGTTACTTATTGTGAAATGTAAATT	CAACTAAATATTTGCCAGCTCCCTGAAAGTCACC
GTTTTAGTTACTTATTGTGAAATGTAAATT	TCGCCATGACGAAATCTAGCGCTTGTCCTACTAA
GTTTTAGTTACTTATTGTGAAATGTAAATT	AAACAAGTGCTTCTGGCAATACCAACGTTCCATC
ATTTTAGTTACTTATTATGAAATGTAAATT

>NZ_CP019621|1|1|557909-558262|CRISPRCasFinder
GTTTTAGTTACTTATTGTGAAATGTAAAT	TTTATTACCCCTAATTATACACGTTGTGACACGCCCCC
GTTTTAGTTACTTATTGTGAAATGTAAAT	ATTTCCATCTTTCTGTAACAAACTTGTAACACAAAAA
GTTTTAGTTACTTATTGTGAAATGTAAAT	TCAACTAAATATTTGCCAGCTCCCTGAAAGTCACC
GTTTTAGTTACTTATTGTGAAATGTAAAT	TTCGCCATGACGAAATCTAGCGCTTGTCCTACTAA
GTTTTAGTTACTTATTGTGAAATGTAAAT	TAAACAAGTGCTTCTGGCAATACCAACGTTCCATC
ATTTTAGTTACTTATTATGAAATGTAAAT

>NZ_CP019621|1|1|557909-558263|CRT
GTTTTAGTTACTTATTGTGAAATGTAAATT	TTATTACCCCTAATTATACACGTTGTGACACGCCCCC
GTTTTAGTTACTTATTGTGAAATGTAAATA	TTTCCATCTTTCTGTAACAAACTTGTAACACAAAAA
GTTTTAGTTACTTATTGTGAAATGTAAATT	CAACTAAATATTTGCCAGCTCCCTGAAAGTCACC
GTTTTAGTTACTTATTGTGAAATGTAAATT	TCGCCATGACGAAATCTAGCGCTTGTCCTACTAA
GTTTTAGTTACTTATTGTGAAATGTAAATT	AAACAAGTGCTTCTGGCAATACCAACGTTCCATC
ATTTTAGTTACTTATTATGAAATGTAAATT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019621.1\|WP_003721290.1\|552899_553298_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019621.1\|WP_003721301.1\|563186_563618_+\|universal-stress-protein	unknown	unknown	gnl\|CDD\|366180
NZ_CP019621.1\|WP_003721299.1\|560410_560869_-\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378956
NZ_CP019621.1\|WP_077286573.1\|563664_565095_-\|CapA-family-protein	unknown	unknown	gnl\|CDD\|225399
NZ_CP019621.1\|WP_077286569.1\|553955_555002_+\|galactitol-1-phosphate-5-dehydrogenase	unknown	unknown	gnl\|CDD\|176198
NZ_CP019621.1\|WP_031644464.1\|548962_549613_+\|transaldolase	unknown	unknown	gnl\|CDD\|223254
NZ_CP019621.1\|WP_003721291.1\|553308_553959_+\|ribulose-phosphate-3-epimerase	unknown	unknown	gnl\|CDD\|223114
NZ_CP019621.1\|WP_003721303.1\|565215_566031_-\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|223483
NZ_CP019621.1\|WP_003733192.1\|551785_552388_+\|SIS-domain-containing-protein	unknown	unknown	gnl\|CDD\|223865
NZ_CP019621.1\|WP_003721294.1\|555325_556597_+\|PTS-galactitol-transporter-subunit-IIC	unknown	unknown	gnl\|CDD\|226298
NZ_CP019621.1\|WP_003721293.1\|555017_555311_+\|PTS-sugar-transporter-subunit-IIB	unknown	unknown	gnl\|CDD\|99908
NZ_CP019621.1\|WP_003733190.1\|556736_557672_+\|ribose-phosphate-pyrophosphokinase	unknown	unknown	gnl\|CDD\|234929
NZ_CP019621.1\|WP_033920546.1\|561250_563086_+\|lmo0514-family-class-1-internalin	unknown	unknown	gnl\|CDD\|380190
NZ_CP019621.1\|WP_077286571.1\|558653_559232_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019621.1\|WP_077286567.1\|549721_551782_+\|BglG-family-transcription-antiterminator	unknown	unknown	gnl\|CDD\|226234
NZ_CP019621.1\|WP_003721297.1\|559339_560020_+\|type-1-glutamine-amidotransferase	unknown	unknown	gnl\|CDD\|153212
NZ_CP019621.1\|WP_003721298.1\|560044_560404_-\|Lin0512-family-protein	unknown	unknown	gnl\|CDD\|131113
NZ_CP019621.1\|WP_031644454.1\|566826_568242_+\|multidrug-efflux-MFS-transporter	unknown	unknown	gnl\|CDD\|129794
NZ_CP019621.1\|WP_014601725.1\|566311_566680_-\|DUF1304-domain-containing-protein	unknown	unknown	gnl\|CDD\|226282
NZ_CP019621.1\|WP_003733191.1\|552415_552883_+\|PTS-sugar-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|238129

Protein	Function_ID	Function_description	E-value
NZ_CP019621.1\|WP_003721301.1\|563186_563618_+\|universal-stress-protein	gnl\|CDD\|366180	pfam00582, Usp, Universal stress protein family. The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, though UspA lacks ATP-binding activity.	4.03126e-27
NZ_CP019621.1\|WP_033920546.1\|561250_563086_+\|lmo0514-family-class-1-internalin	gnl\|CDD\|380190	NF033186, internalin_K, class 1 internalin InlK. Internalins, as found in the intracellular human pathogen Listeria monocytogenes, are paralogous surface-anchored proteins with an N-terminal signal peptide, leucine-rich repeats, and a C-terminal LPXTG processing and cell surface anchoring site. Members of this family are internalin K (InlK), a virulence factor. See articles PMID:17764999. for a general discussion of internalins, and PMID:21829365, PMID:22082958, and PMID:23958637 for more information about internalin K.	6.04732e-120
NZ_CP019621.1\|WP_077286573.1\|563664_565095_-\|CapA-family-protein	gnl\|CDD\|225399	COG2843, PgsA, Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) [Cell envelope biogenesis, outer membrane].	1.31136e-99
NZ_CP019621.1\|WP_077286569.1\|553955_555002_+\|galactitol-1-phosphate-5-dehydrogenase	gnl\|CDD\|176198	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Horse liver alcohol dehydrogenase is a dimeric enzyme and each subunit has two domains. The NAD binding domain is in a Rossmann fold and the catalytic domain contains a zinc ion to which substrates bind. There is a cleft between the domains that closes upon formation of the ternary complex.	0
NZ_CP019621.1\|WP_031644464.1\|548962_549613_+\|transaldolase	gnl\|CDD\|223254	COG0176, MipB, Transaldolase [Carbohydrate transport and metabolism].	2.16719e-63
NZ_CP019621.1\|WP_003721291.1\|553308_553959_+\|ribulose-phosphate-3-epimerase	gnl\|CDD\|223114	COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism].	4.74405e-108
NZ_CP019621.1\|WP_003721303.1\|565215_566031_-\|histidine-phosphatase-family-protein	gnl\|CDD\|223483	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only].	5.01016e-50
NZ_CP019621.1\|WP_003733192.1\|551785_552388_+\|SIS-domain-containing-protein	gnl\|CDD\|223865	COG0794, GutQ, Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane].	1.15952e-75
NZ_CP019621.1\|WP_003721294.1\|555325_556597_+\|PTS-galactitol-transporter-subunit-IIC	gnl\|CDD\|226298	COG3775, GatC, Phosphotransferase system, galactitol-specific IIC component [Carbohydrate transport and metabolism].	7.01085e-178
NZ_CP019621.1\|WP_003721293.1\|555017_555311_+\|PTS-sugar-transporter-subunit-IIB	gnl\|CDD\|99908	cd05566, PTS_IIB_galactitol, PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.	3.06007e-27
NZ_CP019621.1\|WP_003733190.1\|556736_557672_+\|ribose-phosphate-pyrophosphokinase	gnl\|CDD\|234929	PRK01259, PRK01259, ribose-phosphate diphosphokinase.	1.26262e-153
NZ_CP019621.1\|WP_031644454.1\|566826_568242_+\|multidrug-efflux-MFS-transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	4.42897e-80
NZ_CP019621.1\|WP_003721299.1\|560410_560869_-\|MarR-family-transcriptional-regulator	gnl\|CDD\|378956	pfam12802, MarR_2, MarR family. The Mar proteins are involved in the multiple antibiotic resistance, a non-specific resistance system. The expression of the mar operon is controlled by a repressor, MarR. A large number of compounds induce transcription of the mar operon. This is thought to be due to the compound binding to MarR, and the resulting complex stops MarR binding to the DNA. With the MarR repression lost, transcription of the operon proceeds. The structure of MarR is known and shows MarR as a dimer with each subunit containing a winged-helix DNA binding motif.	8.31646e-13
NZ_CP019621.1\|WP_077286567.1\|549721_551782_+\|BglG-family-transcription-antiterminator	gnl\|CDD\|226234	COG3711, BglG, Transcriptional antiterminator [Transcription].	4.1182e-80
NZ_CP019621.1\|WP_003721297.1\|559339_560020_+\|type-1-glutamine-amidotransferase	gnl\|CDD\|153212	cd01741, GATase1_1, Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine amidotransferases, or as domains in a much larger multifunctional synthase protein, such as CPSase.	7.71833e-60
NZ_CP019621.1\|WP_003721298.1\|560044_560404_-\|Lin0512-family-protein	gnl\|CDD\|131113	TIGR02058, lin0512_fam, conserved hypothetical protein. This family consists of few members, broadly distributed. It occurs so far in several Firmicutes (twice in Oceanobacillus), one Cyanobacterium, one alpha Proteobacterium, and (with a long prefix) in plants. The function is unknown. The alignment includes a perfectly conserved motif GxGxDxHG near the N-terminus. [Hypothetical proteins, Conserved].	5.62162e-67
NZ_CP019621.1\|WP_014601725.1\|566311_566680_-\|DUF1304-domain-containing-protein	gnl\|CDD\|226282	COG3759, COG3759, Predicted membrane protein [Function unknown].	2.99459e-41
NZ_CP019621.1\|WP_003733191.1\|552415_552883_+\|PTS-sugar-transporter-subunit-IIA	gnl\|CDD\|238129	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.	2.76446e-37

>NZ_CP019621.1|WP_003733190.1|556736_557672_+|ribose-phosphate-pyrophosphokinase
MAGKMKLFSVTSERPLATKIADYLDIPLCEVELQKFSDGEVKINIEESIRGTNAYVVQSMNSNVNERLMELLIMVDALKRASVHSINIIMPYYGYARQDRKARSREPITAKLMANLIQRAGANRLITVDLHAAQIQGFFNIPIDHLSAIPLIGDYLIENYGEKDVVVVAPDHSGVVRARRIADRLNAPIAILNRKPRPHEDEIMSVIGDVKGKVAIVVDDIIDTGVRATTSADILLEKGAVEVIACATHSVMAGNATERLQNSNIKEVITSDSIDLPEDKQFDKLTTISIGRILGRAIEGVQENRSLHPLF
>NZ_CP019621.1|WP_003721294.1|555325_556597_+|PTS-galactitol-transporter-subunit-IIC
MDIILDFFKYIIGLGVTVMMPIIITILGVIFRKKISVAFKAGLTVGVGFVGLGVITSLMLTTITPVTKALVENYNFKLTATDIGWGVGSSLAWGTEVVPFVFVAIIATNILMIAFKWTKTMDVDIWNYWQPLFIASALYLTTGSMIIAVLSSIINMAIIFKIADWTQKDVEDVLGLEGISLPQIQTTGWALVGYPMNWLLGKIPGVRKINWSTEKVQSRLGIFGEPMLMGLIIGGGLAAIAQMPLSQVLQTGVTIAASLVLIPRMVSLLMDGLTVISEAAHEFMEKRFPGRELFIGLDSAVGIGHPFVLSLGLLMIPITLILAFILPGNKVLPLADLTALPFYMIFAIVPSKGNLFRGIFTGIVIVIITLYLSGAAAPLMTELAGQIGYNIPKDAVEVTSLAVGTQWYTWIVYYGLHWFGGIL
>NZ_CP019621.1|WP_003721293.1|555017_555311_+|PTS-sugar-transporter-subunit-IIB
MKKKRIYVCCGTGIATSTVISKKVRAVLDEKRIPYEISQCTVQEVASKVSTSKPDIIVSSTTVTGDVGDVPVVIGRSFLTGLKKQETIDEILAILQD
>NZ_CP019621.1|WP_077286569.1|553955_555002_+|galactitol-1-phosphate-5-dehydrogenase
MKALKLYGKRDLRYEETDMPTIEEPDDVILKVKTVGICGSDISRYSKLGPYVPGMVWGHEFSGEVIEVGSEVTDIEIGDRAAGCPALYCGECEYCKKGEFARCRKLTVIGARHPGAYAEYIKLPAENVVKIPDELDYEAAALVEPSAVVVHGFYHTKLQAGDDVVVVGSGNIGLLAIQWAKVFGARRVIAIDVDDKKLALAKEVGADVVINSLKEDPLEVVAAHTDGLNADLVVEAAGSPITSAQVFAYAKKGGGVVFLGIPYADVTIERFYFEKIVRSELTVWGSWNAISAPFPGKEWQTTIHFLANKQINIEPMITHRLSLAEGPEVFERIYERNEFFGKVLFFPE
>NZ_CP019621.1|WP_003721291.1|553308_553959_+|ribulose-phosphate-3-epimerase
MAKIVPSVFGADIGRINEQLQVLEKNDIDLLHVDMMDGSFVPNIAFGPDQIKMMKKGTKLQFDVHMMVYEPDRYIPRLVEAGAHMITVHQEATTHLHRTIQLIKSYGVRAGVVLNPGTPPSTLEYVLDDIDCILLMTVNPGLGGQKFFQSSLEKIRKTKAYIGNRPIQIEVDGGVNDELAKECTLAGADLIVVGSYLFEGDIEANLEKLAKGVLTE
>NZ_CP019621.1|WP_003721290.1|552899_553298_+|hypothetical-protein
MGSFFASFVDWLIGSPGRFVVNLIEDNMLIFMVVVMIYATTILYAKWTLAYYLPKKMSQLAEMKTWELDELYAAWQTEKKALPWYILVPSRNEFWVKSARNAPESTKLLHFSQQKLKLSDKEKLQKIIEIQS
>NZ_CP019621.1|WP_003733191.1|552415_552883_+|PTS-sugar-transporter-subunit-IIA
MDVLEYFKEEMVRFSNEQNKEKLLAEMAEQLCEVGAVKPSYKDAVIKREKVFPTGLLTAHAGVAIPHTDSEHVIRPVVAVRILKKPVSFIEMASDNEAIDVRIVFMMALRSADEQLDMLQTLIQLIQDEEVMTTLLKAQETGDVLSAIEHFSKNN
>NZ_CP019621.1|WP_003733192.1|551785_552388_+|SIS-domain-containing-protein
MDKQAILNNIHQTWQEEANAISRLPEVTSEEALVKTVEKIAECTGKIVVAGCGTSGVAAKKLVHSFNCIERPAVFLTPSDAVHGTLGVLQKEDILILISKGGNTGELLNLIPACKTKGSTLIGVTENPDSVIAKEADIFFPVSVSKEPDPFNMLATASTMAVIASFDAVIVCLMTYMNYTKEQFSVIHPGGAVGNKLLNK
>NZ_CP019621.1|WP_077286567.1|549721_551782_+|BglG-family-transcription-antiterminator
MYLDNRSKTLFQEVIKNPNITNKQLEVKYKLSRYQISYSFQKVNEWLKWKNYPEVKRSKNGRFILEPELTALFSEKETRDPSVEYLPSENERANLILLMLLTSKEELSLAHFTTKIQVSKNTILRDLKVAQKLLPKETTVTYSRASGYQLAGNEWELRKVLTQVVSSVKEMFRGEHYFLSYSGIEKVQLMEIRRTLEEAEAMMQIKFTYEQIELLPYLLSVMFLRIRDRRLIDTAFHIDEKSLSDTREYHITDILLEKTGPVPEQERLFITLQLLTTNIFSGEILTEKLTEDLEKVVLTCLDLFEKKALVSLKNKHILIEKLLLHLKPAYYRIKYQMNLEDTLYEKFNQEFEALNFIVKEAFDPLAKFIGREIPAGEIFFISLFIGSDMIPQNDIYHKQKRAIVLCPSGVTFSKIMENILVKLFPEIHFYPTISVREYAFFKAEVDIVFSSIPLKDGENVFVVQPFMNDIEKTQLRQHVLQNLFGMGNQLTSIDKIMEVVERNADIKDPNAIRDGIIDILSANTATDENKRVKKVYLHDLITEDNIMICEDVKNYQEAIRLASQPLLLQQAITANYVKTMIDNHKFHDPYIIIGEDIAIPHAMPNAGVNRLAMSLLVVKNGVYFSETEQVHFVIVIAPVDKEQHIEALYQIVHLAENHQILDDLLENVTKEKIMQTINQLVIREDE
>NZ_CP019621.1|WP_031644464.1|548962_549613_+|transaldolase
MHLDSANLDDVKKIQASSIFKGITTNPTILVKEKCNRQTAINRILELTDKQVFVQTVGFSYEEILADARMLLAMFGKEKIAIKIPAHEAGINVIDTLKKEDKTIQILGTAIYSADQAIAAAMAGADFVAPYVNRMSAANIDPFKEISQMRHFFDKKALKTQIMAASFKHSGQVMQAYESGADTVTIPYEIYSQMTNKVLAVEAIRVFNEDAVLYEK
>NZ_CP019621.1|WP_077286571.1|558653_559232_+|hypothetical-protein
MKKILVSILLLATILASCSSPNEKITKDTKISKTITIRADYKVPKDIKELEDDSANIVKVKFLQNKTIGKDGSTISEIEILTSYKGNLEKGSKVDISEPWYLSDGKYVAVENYIALDKEQEYTIFLGEKDKDTYPLSSLGYGKFGGSLKEDQAVLADFNILGEVQKFDFISENTEEVKNYQLIKEQVAGKYK
>NZ_CP019621.1|WP_003721297.1|559339_560020_+|type-1-glutamine-amidotransferase
MIIDVLQHVPHEGPGLIANWARENQHQLKIHSLFEENAHVPNDSDFLIVLGGPMGINDTAEFPWLKDERKLIKRLSEQHKPVFGVCLGAQQIAATFGSEITVNKEKEVGWFPVKRTSDKLLFFPESLNVFHWHQDTFALPTGSTRLFASEGCLNQAFLYGENIIGLQFHFEMEKAGIETILRIDEAFITPGKYVQSVEVMREKDVPEDNKQMLEAILDYLINPKTI
>NZ_CP019621.1|WP_003721298.1|560044_560404_-|Lin0512-family-protein
MEQILFIQTGFGVDVHGQNITKAAERAVRNAIFTNSMPGIQGLLPDGDLQNMVVNIKLALPCDADQLDEDTIRAIIPYGTVTIEKMAGGMMTTSGIFLEDKEDKNDLMYIVNASVETGY
>NZ_CP019621.1|WP_003721299.1|560410_560869_-|MarR-family-transcriptional-regulator
MNNEQNMNQQIALFYFGYKAFTETADLIIAKHSLKRLHHRILFFTARMPGLTINELLTFLEISKQALHQPLAELKERELLTIEQGRRDKRQRCIFLTSAGKELENELGDAQRKQMSEIFTNSADTDGMHFTEVMEGYAKNRPGAAFIKDFKE
>NZ_CP019621.1|WP_033920546.1|561250_563086_+|lmo0514-family-class-1-internalin
MKKALKLFLATICMFIMIYPSTAAHAEETNIVNIPDANLKTYLNGLLKQASDAPITKTQMNTIQTVTLSGSTYTDLTGLEEAGNLVTLSINNTNIQTLEPIKNQTSLTYLTVGGDNVKDSLFVDLNGLVNLQSLSINGSEVTHNVFKTFNKLPKLTYLYAQNSMKITDISALASLPALTTLFLQFDGIDDFRPLNDFESFKNGNLKALAAFGQNTGRTNPRITLKSGKLDYNETNQTLYLPFSMMPKPLTSFDGTVAPFSKSTSASNTYLGFNDVALPSSRLSITDDGITVSGVTKEEFDNLDEIEYNARYDFPTGSYPTPPSMTSYTISSGTYDQYFDISHTLDLTADESFDYNQYDATSEEQFLKDVHAETDDGTAVKSDFDQVVKLDVPGEYTVTLNAENAAGLKATPVTVKVTVHEKPVITSDSQISYKKETTKSVDEFLKEIHGSVTGNAVLTSDFDKVVDLNTPGEYTVTLNAINDRGQKADPVTVVVTVTTSDSGHVNPVPPTPEVKPTPQEETDQTIIPEPQSETTEDSVKEDQAKDGQAKSEEKADKTSLTTKENKVEKSEKTNQPKTKALPQTGDTNKTALPIAGVMLSLAALLIFRKSKS
>NZ_CP019621.1|WP_003721301.1|563186_563618_+|universal-stress-protein
MEKYHRILVAVDGSEPAKLAFEKGLELALKLDGVLGIASIVDLRAFSPNVSYDGSLEEKAELELKTSVNEYAEKARTAGVKQVETFVAKGNPKILLSTDIPAEFQADLIICGATGMNRVEKLVLGSVSSYIMAHAICDTLIAR
>NZ_CP019621.1|WP_077286573.1|563664_565095_-|CapA-family-protein
MKKLTYVIITGLVLVFIAGAFWITNSTNQSDQKATQTEPIKKISPANVKTISSEAKKTLNSLASSGADKASISDLKQLIKELKSYPTEKNDSGVYLQNLTACLEAVKSYTTGKTDEKTLGKVYPAFLASEQKLSAIEKTNQYDWFYAAAATNQQGLKEKGVVTLTMVGDNSFGTYPETPEHLKFDNVFQKNNGNNTYVYKNCLPWFKSDDYTVINAESAFTNATKAENKKWRIKSDPAHVAFLPASGVDAANLANNHTMDYFQVGYDDTLKAFKENNIPVFNTDAPLETTIKGMKTVLLGYDCRMSQQSPAYLERIVKDVKKYKKEDTLVIVNMHWGVEYRETPTDYQTQFGHAILDAGADIIMGSHPHRLESVEKYKDKYIVYSMGDFAFGADPTLLSRMTSMFQLRFTKEDNKIVLKDISIVPTYENSDGSTTENNYQPLPVFGDDAKKIVDELNRISKPIEGGVTEYTYFDPF
>NZ_CP019621.1|WP_003721303.1|565215_566031_-|histidine-phosphatase-family-protein
MKKNIFKLLMALCAVLLIAGCGNSTSADKKETKETKEDGTVTFYVVRHGKTMLNTTDRVQGWSDAVLTPAGEEVVKSAGKGLKDVDFSAAYSSDSGRAIQTANLILKESDKSADKEVQTDPRFREFNFGSYEGDLNENMWTDIAKSQGKTLEEWQKAGLSPKDFANSVAALDKTRVKEGENWPAEDYATIQARLKEGLTDVAKKESKNGDSNVLLVSHGLSIGALLDTIEPGYKLPAEGIKNASVTKITYKDGKFTIGDVNDLSYVEKGSK
>NZ_CP019621.1|WP_014601725.1|566311_566680_-|DUF1304-domain-containing-protein
MAILAFILTFIVMIEHIYIMILEMFFANTKLAAKTFGVEKELLANKKVQTLFANQGLYNGFLAAGLVWGLFFAGAGFAETVQIFFLSCVVVAALFGGATSSKGILVKQGLPAVLALVVVLLV
>NZ_CP019621.1|WP_031644454.1|566826_568242_+|multidrug-efflux-MFS-transporter
MQQEATGGQKIRPIPIIASFLMAGFIGLFSETALNMALSDLIQVFDISSATVQWLTTGYLLTLGILVPISGLLLQWFTTRGLFFTAVSFSIAGTLIAALSPTFAMLMIGRVVQAVGTALLLPLMFNTILLIFPEHKRGSAMGMIGLVIMFAPAVGPTISGLILENLTWNWIFWISLPFLIIALLFGMKFMQNVSVVTKPKIDILSIILSTLGFGGVVFAFSSAGESGWGSATVLVSIIVGGLALGLFVWRQLTMEKPLMDLKVFKYPMFTLGLILVFISFMMILSTMILLPLYLQNSLALAAFSAGLVLLPGGVLNGLMSPFTGRLFDAYGPRALVIPGFIVAVVALFFLTRIEVGTSALTIIVLHSVLMIGISMVMMPAQTNGLNQLPPKLYPDGTAIMNTLQQVSGAIGTAVAITIMSAGQKAYMETAQGMGPEQMVASLTAGIQNAFVFGLIMACIGLLCSLFIRKAK

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Crispr_ID: NZ_CP019621_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP019621_2

2703308-2703937

TypeII

II-A,II-B

Consensus_repeat	Method
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CRISPRCasFinder
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CRT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	PILER-CR

9 spacers

csn2,cas2,cas1,cas9

The CRISPR arrays of NZ_CP019621_2

>merge|NZ_CP019621|2|2703308-2703937|CRISPRCasFinder,CRT,PILER-CR
TATGTGTTGATATTCAGAATAATGTAGCTCTAAAACCAAGTTAAAGATATCAACTACATTCAGACAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACAATGTAAAGTTACTTTTAAAAAACTATCGGGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACCCGTTCTGACCCTTGATAAAGAATTCGTATGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACTTTCAACGGGAAGAAGGGCGCTTCCCTAAAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACAGATGATGCGTATTTATATTGTCGATTGATGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACCCATCTCGACTATAAACGGCACTTCGTAAAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACATATTAATACCGCAGTAAAATTAAGCAATAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACGGCGAAGTCATCGGTTTAACAACTAAAGATGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACAACTTGCGAGATGCTTCTTCATGCTTCGCTGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC

>NZ_CP019621|2|2|2703308-2703937|CRISPRCasFinder
TATGTGTTGATATTCAGAATAATGTAGCTCTAAAAC	CAAGTTAAAGATATCAACTACATTCAGACA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AATGTAAAGTTACTTTTAAAAAACTATCGG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CCGTTCTGACCCTTGATAAAGAATTCGTAT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TTTCAACGGGAAGAAGGGCGCTTCCCTAAA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AGATGATGCGTATTTATATTGTCGATTGAT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CCATCTCGACTATAAACGGCACTTCGTAAA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	ATATTAATACCGCAGTAAAATTAAGCAATA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GGCGAAGTCATCGGTTTAACAACTAAAGAT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AACTTGCGAGATGCTTCTTCATGCTTCGCT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC

>NZ_CP019621|2|2|2703308-2703937|CRT
TATGTGTTGATATTCAGAATAATGTAGCTCTAAAAC	CAAGTTAAAGATATCAACTACATTCAGACA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AATGTAAAGTTACTTTTAAAAAACTATCGG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CCGTTCTGACCCTTGATAAAGAATTCGTAT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TTTCAACGGGAAGAAGGGCGCTTCCCTAAA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AGATGATGCGTATTTATATTGTCGATTGAT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CCATCTCGACTATAAACGGCACTTCGTAAA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	ATATTAATACCGCAGTAAAATTAAGCAATA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GGCGAAGTCATCGGTTTAACAACTAAAGAT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AACTTGCGAGATGCTTCTTCATGCTTCGCT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC

>NZ_CP019621|2|2|2703506-2703937|PILER-CR
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TTTCAACGGGAAGAAGGGCGCTTCCCTAAA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AGATGATGCGTATTTATATTGTCGATTGAT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CCATCTCGACTATAAACGGCACTTCGTAAA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	ATATTAATACCGCAGTAAAATTAAGCAATA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GGCGAAGTCATCGGTTTAACAACTAAAGAT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AACTTGCGAGATGCTTCTTCATGCTTCGCT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019621.1\|WP_077287015.1\|2685501_2688489_-\|formate-dehydrogenase-subunit-alpha	unknown	unknown	gnl\|CDD\|225918
NZ_CP019621.1\|WP_023548324.1\|2705055_2705922_-\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|187851
NZ_CP019621.1\|WP_023548322.1\|2710436_2710916_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019621.1\|WP_014602250.1\|2713698_2714565_-\|energy-coupling-factor-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|237454
NZ_CP019621.1\|WP_003723285.1\|2685025_2685502_-\|DUF1641-domain-containing-protein	unknown	unknown	gnl\|CDD\|225283
NZ_CP019621.1\|WP_077287021.1\|2705922_2709927_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	COG3513_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226044
NZ_CP019621.1\|WP_023548327.1\|2702419_2702782_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019621.1\|WP_003723652.1\|2711100_2711493_-\|30S-ribosomal-protein-S9	unknown	unknown	gnl\|CDD\|178888
NZ_CP019621.1\|WP_003723642.1\|2698137_2699166_-\|Mrp/NBP35-family-ATP-binding-protein	unknown	unknown	gnl\|CDD\|378455
NZ_CP019621.1\|WP_003723289.1\|2691459_2692347_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP019621.1\|WP_023548321.1\|2712898_2713696_-\|energy-coupling-factor-transporter-transmembrane-protein-EcfT	unknown	unknown	gnl\|CDD\|223692
NZ_CP019621.1\|WP_003733032.1\|2712146_2712893_-\|tRNA-pseudouridine(38-40)-synthase-TruA	unknown	unknown	gnl\|CDD\|234577
NZ_CP019621.1\|WP_023548325.1\|2704065_2704728_-\|type-II-A-CRISPR-associated-protein-Csn2	csn2	cd09758_csn2_CAS-II-A	gnl\|CDD\|213408
NZ_CP019621.1\|WP_003733027.1\|2704717_2705059_-\|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
NZ_CP019621.1\|WP_003727703.1\|2711514_2711952_-\|50S-ribosomal-protein-L13	unknown	unknown	gnl\|CDD\|181703
NZ_CP019621.1\|WP_023548329.1\|2699434_2700961_+\|GW-domain-containing-glycosaminoglycan-binding-protein	unknown	unknown	gnl\|CDD\|224619
NZ_CP019621.1\|WP_009932866.1\|2701875_2702298_-\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133384
NZ_CP019621.1\|WP_009931305.1\|2688987_2689830_+\|S-adenosyl-l-methionine-hydroxide-adenosyltransferase-family-protein	unknown	unknown	gnl\|CDD\|224824
NZ_CP019621.1\|WP_014602247.1\|2701002_2701854_-\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381359
NZ_CP019621.1\|WP_077287018.1\|2689877_2691359_-\|multidrug-efflux-MFS-transporter	unknown	unknown	gnl\|CDD\|129794

Protein	Function_ID	Function_description	E-value
NZ_CP019621.1\|WP_077287015.1\|2685501_2688489_-\|formate-dehydrogenase-subunit-alpha	gnl\|CDD\|225918	COG3383, COG3383, Uncharacterized anaerobic dehydrogenase [General function prediction only].	0
NZ_CP019621.1\|WP_023548324.1\|2705055_2705922_-\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187851	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer intergration. Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	1.40242e-129
NZ_CP019621.1\|WP_003733032.1\|2712146_2712893_-\|tRNA-pseudouridine(38-40)-synthase-TruA	gnl\|CDD\|234577	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA.	2.82266e-128
NZ_CP019621.1\|WP_077287018.1\|2689877_2691359_-\|multidrug-efflux-MFS-transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	1.39683e-108
NZ_CP019621.1\|WP_014602250.1\|2713698_2714565_-\|energy-coupling-factor-ABC-transporter-ATP-binding-protein	gnl\|CDD\|237454	PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional.	0
NZ_CP019621.1\|WP_003723285.1\|2685025_2685502_-\|DUF1641-domain-containing-protein	gnl\|CDD\|225283	COG2427, COG2427, Uncharacterized conserved protein [Function unknown].	1.26483e-27
NZ_CP019621.1\|WP_077287021.1\|2705922_2709927_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	gnl\|CDD\|226044	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms].	0
NZ_CP019621.1\|WP_003723652.1\|2711100_2711493_-\|30S-ribosomal-protein-S9	gnl\|CDD\|178888	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed.	4.44953e-85
NZ_CP019621.1\|WP_003723642.1\|2698137_2699166_-\|Mrp/NBP35-family-ATP-binding-protein	gnl\|CDD\|378455	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase. This family contains ATPases involved in plasmid partitioning. It also contains the cytosolic Fe-S cluster assembling factor NBP35 which is required for biogenesis and export of both ribosomal subunits.	4.13281e-115
NZ_CP019621.1\|WP_003723289.1\|2691459_2692347_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	2.88589e-15
NZ_CP019621.1\|WP_023548321.1\|2712898_2713696_-\|energy-coupling-factor-transporter-transmembrane-protein-EcfT	gnl\|CDD\|223692	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism].	4.09391e-53
NZ_CP019621.1\|WP_023548325.1\|2704065_2704728_-\|type-II-A-CRISPR-associated-protein-Csn2	gnl\|CDD\|213408	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2. Csn2 is a Nmeni subtype-specific Cas protein, which may function in the adaptation process which mediates the incorporation of foreign nucleic acids into the microbial host genome. Csn 2 may interact directly with double-stranded DNA. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA. Csn2 has been predicted to be a functional analog of Cas4 based on anti-correlated phyletic patterns; also known as SPy1049 family.	1.58789e-114
NZ_CP019621.1\|WP_003727703.1\|2711514_2711952_-\|50S-ribosomal-protein-L13	gnl\|CDD\|181703	PRK09216, rplM, 50S ribosomal protein L13; Reviewed.	2.08607e-102
NZ_CP019621.1\|WP_023548329.1\|2699434_2700961_+\|GW-domain-containing-glycosaminoglycan-binding-protein	gnl\|CDD\|224619	COG1705, FlgJ, Muramidase (flagellum-specific) [Cell motility and secretion / Intracellular trafficking and secretion].	3.89328e-69
NZ_CP019621.1\|WP_009932866.1\|2701875_2702298_-\|MerR-family-transcriptional-regulator	gnl\|CDD\|133384	cd01109, HTH_YyaN, Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.	1.95207e-42
NZ_CP019621.1\|WP_009931305.1\|2688987_2689830_+\|S-adenosyl-l-methionine-hydroxide-adenosyltransferase-family-protein	gnl\|CDD\|224824	COG1912, COG1912, Uncharacterized conserved protein [Function unknown].	4.67495e-126
NZ_CP019621.1\|WP_014602247.1\|2701002_2701854_-\|aldo/keto-reductase	gnl\|CDD\|381359	cd19133, AKR_AKR5F1, the AKR5F family of aldo-keto reductase (AKR). Klebsiella sp. 2,5-diketo-D-gluconic acid reductase (2,5-DKG reductase) is a founding member of aldo-keto reductase family 5 member F1 (AKR5F1). It catalyzes the reduction of 2,5-diketo-D-gluconic acid (25DKG) to 2-keto-L-gulonic acid (2KLG).	1.21419e-171
NZ_CP019621.1\|WP_003733027.1\|2704717_2705059_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	1.15214e-45

>NZ_CP019621.1|WP_023548327.1|2702419_2702782_-|hypothetical-protein
MKKTSIIFTFCALLLTACSTTTKEIPRQTTEATGTIEQVETESILIKNFKIKNDNNTPELSVRFHISEKYHDETGNKIKRTELNKNDNIKIILTKDFQIQETSPAQIDPKYVQKIILLNK
>NZ_CP019621.1|WP_009932866.1|2701875_2702298_-|MerR-family-transcriptional-regulator
MNIKQAADMFGLTVDTLRYYERVGVIPPVHRNESGYRDYKTSDLNWVYLVKNLRNAGLSVESLIEFATLAQLRETQNVEAAQKQVLVDQLKELDEKLAEMKQVRDLLVYKIDSYDSHIAQFKAGELNADNVEKLWERDKF
>NZ_CP019621.1|WP_014602247.1|2701002_2701854_-|aldo/keto-reductase
MKTVKLNNGVEVPILGFGTYQITDAAEAEQAVKDAIKAGYRHIDTAQSYMNEEAVGRGIAASGVDRKELFITTKIWVENVSYKGVMSSFDRSLKRLGLDYVDLLLIHQPFNDVYGAWIAMEELQASGKIRAIGVSNFSPDRVIDLAAFNEVTPQVNQIEVNPFQQQTANLAILRKEGVAIEAWAPFAEGKNDIFNNPVLTKIGAKYGKSAAQVILRWLVEQDIIVLAKSVKPERMAQNLAIFDFELTEADKEEIAGLNQGESQFFSHADPEMVKWMASRKLNV
>NZ_CP019621.1|WP_023548329.1|2699434_2700961_+|GW-domain-containing-glycosaminoglycan-binding-protein
MDRKFIKPGIILLIVAFLVVSINVGAETGGSRTAQVNLTTSQQAFIDEILPAAQDGYRDGKLLTSVTLAQAILESNWGESGLSQNSNNLFGIKGTYKGKSVSMGTMEASGSTTANFRVYPSWKESIEDHTALITENARYQDAVGETNYRKALQAIKDGGYATDPDYVSKLVAIIERYNLDKYDVIYDKIDSNQSLAAIGTVAENKKQEVIWSAPYNTEDANKIGTLENYSGRNLEISWEAKTEKGLWYFIRENNKDIGWVNSNALKINYHQKEDENVHLTKYVDDLSAHVYRLPSPEKQFDNGTIAKYDRKALQVDKKITRGGYAWFRISEGEKVIGWVRADKLNDRLYDRITEQTSYDGYALVSKSATDNVWTAPFNTKNAEKLAPLADYNNEKLEIVTRAKAGNTLWYQFKVDGKLVGWASEKDLNVFYTPAKEEPVKQVAYVKDPTVKLYNKPVESTSTNPKAVGFYYGKLLAVDKTATILGEDWLHLKDSQNSLGWIKAIDINS
>NZ_CP019621.1|WP_003723642.1|2698137_2699166_-|Mrp/NBP35-family-ATP-binding-protein
MLNEQQITRLLYRLQDPVLEASLEETEGVLEVQVLEETANIKIALADPAVETDHFVHNIEELLTQFGVNEINIELEYLPAAVIDRIFQARDNILSEASETKFLAIASGKGGVGKSTVSANLAIALAQQGKKVGLLDADIYGFSIPVLLGTTESPHKENGQIIPVETHGIQMISMDFFVEQGEPVIWRGPMLGKMIKMFLEEVRWGKLDYLLIDLPPGTGDVALDIHTLIPKCNELIVTTPHYAAASVASRAGYMAAKNNHKIIGVIENMSYLTLADGQVLKVFGQGGGEKVAADLETQLLIQLPIEQPEPNGNGYVSALFNSSSTSGKAYKTLAEKIIPCLS
>NZ_CP019621.1|WP_003723289.1|2691459_2692347_-|TetR/AcrR-family-transcriptional-regulator
MKEKKQRIIKSAKEVFQKQGYLKTSVQDMVDAAGISKGTFYNYFTSKEELAIVIFKQEYSVLHQRLEYTMAQDGAKKDNFTECLKIIIHFYTENGEILNITFSQTMIDDDFNAFLQNVRLKNMEWVKYQLLEVYGEETKPYINDITMLLSGMAAMYVFASGSKNVNTGLIERAIPYVVRRLDALVKDILESGEIVFTEADTENLVPDQTMIRKKRLAKLREALEELNVGIENADIADSDKWQYKESMNALVGEINNNEAPRDFMVQGTLLYLKQHVPASLTKEVNKLEACVNGLL
>NZ_CP019621.1|WP_077287018.1|2689877_2691359_-|multidrug-efflux-MFS-transporter
MNSTAVERPVDVNGKSYSRSLLVVTMIIGAFVAILNQTLLATALPMIMDDLHITAATGQWLTTAFLLTNGIMIPITALLIEKISSKTLFITAMTVFTIGTIIASVAGSFPILLTGRIVQAAGAGIMMPLLQTIFLLIFPREKRGAAMGLMGLVIAFAPAIGPTLSGWIVDSYDWRVLFLILIPIAVIDIILAFFGMKKVVKLTDTKIDFLSIVMSSIGFGALLYGFSSAGNDGWGDTTVITMLIVGVVVIALFVWRQLVIDNPMLELHVFKYPVFSLSVILGSIVTMAMIGAEIVLPLYIQTIRGESALQSGLLLLPGAIIMGIMSPITGIIFDKIGAKWLTITGVTILSIGTIPFMFLTMDTPLWYIVVFYAVRFFGISMAMMPVSTAGMNALPNHLINHGSAVNNTIRQIAGSIGTAVLITVLTNVTKDNMPGKALMATDPASFAQKAQDASLDGMRAAFMVAAIFAAIGMILSLFLKTKKQEPIVKEYTK
>NZ_CP019621.1|WP_009931305.1|2688987_2689830_+|S-adenosyl-l-methionine-hydroxide-adenosyltransferase-family-protein
MTKQLLVLQSDFGISDGAVSAMYGVINSVSIDLQIYDLTHQIPQFNIWEASYRLLQTVTYWPEDTIFVSIVDPGVGSKRRSVAVLTEDGHYIITPDNGTLTHIAHYGTIKAVRLIDEEKNRLPKSGASHTFHGRDIFAYTAARLAAGVINFEDIGPAANPDSIVSLSLSDSYLEGDQAFGTIDIIDRPFGNLWTNIRRTDFFELGANYGDSIEVLIKHHDRIVYKNFVTYSRSFADLRIGEALIYVNSLDNLGLGINQGSFVDAYSVGTGTSWKVTLKKV
>NZ_CP019621.1|WP_077287015.1|2685501_2688489_-|formate-dehydrogenase-subunit-alpha
MGAKVSVQINGVARDVVEGTRMLDYLNAEGIQHPHICYSEQIGPIQSCDTCMCEVDGELMRACSTNLTDGMEIKTNSELAKDAQLEAMDRILENHLLYCTVCDNNNGNCKVHNTTELLGVEKQERPYREKGYLNDFSHPFYRYDPDQCILCGRCVEACQQVQVNETLSIDWERSQPRVIWDDDRPANLSSCVSCGLCATVCPCNALMEKSMLGQAGFMTGLDEDMLEPMIDMVKKVEPNYQTVFAVSEMEAAMRETRTKKTKTVCTFCGVGCTFEVWTKDRKILKVEPTGEGPVNKFATCVKGKFGWDFVNSEKRITTPLIREGNEFVPASWEDAIHLVATKLREIQAKYGNDSLGFISSSKTTNEENYLMQKLARQVFETNNIDNCSRYCQAPASDGLTRTVGISADSGTVEDIESAGLVIIVGASPADGHPVLASRIKRAQKTRGQKLIVSDLRKHEMAERSDLFIHPKQGTDFVWLTAVAKYMIDQGWHDEVFMENRISNVADYLAFLEPFTLEYAEKETGLSVETLKKVAQMVYEADGTAVCWGMGVTQNIAGSHTSSAIANLLLVTGNFGRHGAGAYPLRGHNNVQGACDMGSLPNVLPGIQPLGNDEVRARFEEAYGVSISPEPGLKNNEMLDAIEAGALHSMYVIGEEMAWVDSNSNHVQEILASLDFFVVQDVFLSKTAQFADVVFPAAPSLEKEGTFTNTERRVQRLYEVLEPLGDSKPDWWIIQEVARACGRTDWNYDHPSEIMDEIASLAPFFAGVRYDRMQGFNSLVWPVSADGKDMPLLYEERFNFPDGKAQFSTLPYIAPITFPEEYNLTLNNGRLLEQFHEGNLTDKSKGLDYKLPEVFVEVSHELAKERDLESGSLVRLSSPYGRIKLRAVVTDRMKGNEVYVPMHSVSSETAVNLLTSSAGDVRTKTPAYKQTKVNLTVLEKTGKNPLPDHNPRNRKRFPQNGAEVARKWSREDYQPISKVNCACGGNCGCGGKGRNH
>NZ_CP019621.1|WP_003723285.1|2685025_2685502_-|DUF1641-domain-containing-protein
MAEPISTIRDTKKTPEELEKERLEQMKADIAEQDSGFIEILETVKLLQESGALEALNSAIKARGDITKTFLNEWRKEPMTNAINNMMISSKLLTDTKPEQTEEMIANLKNAAKKAEESAKNDEIMGMLAMMKALKDPDINRALRYGVTFLKEVGQTLK
>NZ_CP019621.1|WP_023548325.1|2704065_2704728_-|type-II-A-CRISPR-associated-protein-Csn2
MNFNFKLLDEPITIEDSTIFVIEDVRVFANVAKLFYQYDETEELKVFNTKQHPLKSSELMLVTDILGHDINSAATLKLIYTDLEQQLNEKPEVKSMIDKLTATISELIGYELLEHELDLEEDEITVIELFKALGIKIETKSDTVFEKLIEIVQVYKYLSKKKLLVLINVCSYLTEEELLELRRYISLYQVKVLFIEPRKIKGSPQVTLDSDYFLHVENSI
>NZ_CP019621.1|WP_003733027.1|2704717_2705059_-|CRISPR-associated-endonuclease-Cas2
MSYRYMRMLLMFDMPTDTAKERKAYRQFRRFILSEGFIMHQYSVYSKILLNGTASKAMLARLKQQNPKKGLITLLTVTEKQFARMVYLSGEQNKSVGNSDARLIFLGDAIDEF
>NZ_CP019621.1|WP_023548324.1|2705055_2705922_-|type-II-CRISPR-associated-endonuclease-Cas1
MGWRTVVVNSHSKLSYKNQHLVFKSAYQHEMIHLSEIDVLILETTDITLTTMLINCLVSENILILFCDDKRLPIGKVLPFYGRHDSSLQLSKQLGWDSELKSEVWTEIISQKILNQSTFLSMLDYDEKADSLIKLHETLEMFDPTNREGHAARIYFNQLFGNDFTREQENDINSGLNYGYTLLLSIFARELVKSGCMTQFGLKHSNQFNDFNFASDIMEPFRPLVDQIVYEKRAEDFQVIKRSLFELFNKQFDYNDQHMFLTNIASDYTKKVVKVLNEEREGVPEFRI
>NZ_CP019621.1|WP_077287021.1|2705922_2709927_-|type-II-CRISPR-RNA-guided-endonuclease-Cas9
MKNPYTIGLDIGTNSVGWAVLTNQYDLVKRKMKVAGNSDKKQIKKNFWGVRLFDDGQTAVDRRMNRTARRRIERRRNRISYLQEIFAVEMANIDANFFCRLNDSFYVDSEKRNSRHPFFATIEEEVAYHKNYRTIYHLREELVNSSEKADLRLVYLALAHIIKYRGNFLIEGALDTKNTSVDGVYEQFIQTYNQVFMSNIEEGTLAKVEENIEVANILAGKFTRREKFERILQLYPGEKSTGMFAQFISLIVGSKGNFQKVFDLIEKTDIECAKDSYEEDLETLLAIIGDEYAELFVAAKNTYNAVVLSSIITVTDTETNAKLSASMIERFDAHEKDLVELKAFIKLNLPKQYEEIFSNAAIDGYAGYIDGKTKQVDFYKYLKTTLENVEGADYFITKIEEENFLRKQRTFDNGVIPHQLHLEELEAILHQQAKYYPFLREDYEKIKSLVTFRIPYFVGPLAKGQSEFAWLTRKADGEIRPWNIEEKVDFGKSAVDFIEKMTNKDTYLPKENVLPKHSLCYQKYMVYNELTKIRYIDDQGKTNYFSGQEKQQIFNDLFKQKRKVKKKDLELFLRNINHVESPTIEGLEDSFNASYATYHDLMKVGIKQEILDNPLNTEMLEDIVKILTVFEDKRMIKEQLQQFSDVLDGTVLKKLERRHYTGWGRLSAKLLVGIRDKQSHLTILDYLMNDDGLNRNLMQLINDSNLSFKSIIEKEQVSTADKDLQSIVADLAGSPAIKKGILQSLKVVEELVSVMGYPPQTIVVEMARENQTTNKGKNNSKPRYKSLEKAIKEFGSQILKEHPTDNQELKNNRLYLYYLQNGKDMYTGQELDIHNLSNYDIDHIVPQSFITDNSIDNLVLTSSAGNREKGDNVPPLEIVQKRKIFWEKLYQGNLMSKRKFDYLTKAERGGLTEADKARFIHRQLVETRQITKNVANILHQRFNYKTDDNEDTMEPVRIVTLKSALVSQFRKQFQLYKVREVNDYHHAHDAYLNGVVANTLLKVYPQLEPEFVYGEYHQFDWFKANKATAKKQFYTNIMLFFAQKERIIDENGEILWDKKYLETIKKVLNYRQMNIVKKTEIQKGEFSNQNPKPRGDSSKLIPKKTNLNPIKYGGFEGSNMAYAIIIEHEKRKKKVTIEKKLIQINIMERKAFEKDEKVFLEGKGYHQPKVLTKLPKYALYECENGRRRMLGSANEVHKGNQMLLPNHLMTLLYHAEKREAIDGESLAYIEAHKAVFGELLAHISEFARKYTLANDKLDEINMLYERNKDGDVKSIAESFVSLKKFNAFGVHKDFNFFGTTIKRKRDRKLKELLNSTIIYQSITGLYESRKRLDS
>NZ_CP019621.1|WP_023548322.1|2710436_2710916_-|hypothetical-protein
MKSLIIHKMHSSYFTNMSEVFNLLPEGELNCMWLVSSYECNIYPSEQIPFDKDYVWLKGTKLKEILNQKEIMFIWGNFTSYSSDTELKDVLKYLIPFADGNKDLWGKNVQLSNPLSNTELISWDSSIFLALSKNTSIIELLKANYPDSEDLSMYNSDID
>NZ_CP019621.1|WP_003723652.1|2711100_2711493_-|30S-ribosomal-protein-S9
MAQVQYYGTGRRKSSVARVRLVPGDGKIVINNRDWEDYIPFAALREVIKQPLVATETLGNYDVLVNVHGGGYTGQAGAIRHGVARALLQVAPEYRPALKSAGLLTRDSRMKERKKPGLKGARRAPQFSKR
>NZ_CP019621.1|WP_003727703.1|2711514_2711952_-|50S-ribosomal-protein-L13
MRTTYMAKPGEVERKWYVIDATGVSLGRLSSEVASILRGKNKPQFTPHIDTGDFVIIINAGKIGLTGKKATDKIYYRHSQYPGGLKSRTAGEMRTNNPEKLLELSIKGMLPKNSLGRQLFKKLHVYGGSEHEHAAQQPEVYELRG
>NZ_CP019621.1|WP_003733032.1|2712146_2712893_-|tRNA-pseudouridine(38-40)-synthase-TruA
MTRYKAIISYDGSGFYGYQVQPNTRTVQAEIEKALTKMHKGKTVRVTASGRTDTGVHAKGQVIHFDSELDITAEKFQKALQVMTPFDISFLTVEEVPDDFHARFGTVGKEYRYVVKRTKIFDPFSRNFALHYPYELDISKMKLASKRLIGEHDFTSFCSARTERDSKVRTLYSIDFYEEDDETLVIAFQGNGFLYNMVRILTGTLLDAGQGRISPDDISEALLARDRQKLISKTAPPQGLYLWRVDYE
>NZ_CP019621.1|WP_023548321.1|2712898_2713696_-|energy-coupling-factor-transporter-transmembrane-protein-EcfT
MMDKMILGRYIPGNSWLHRIDPRAKITAVMAFIAIVFLANNWLTYALMFAYVLYLVLTSKVPFLFFIKGLQPIFWLILITLLLQVFFTKGGTVLVDLGLLQITTLGLANGAMMFCRFVLIIFMTTLLTLTTSPIELTDGLEKILAPFRLVHLPVHELALMLSISLRFIPTLMDETEKILKAQKARGVEFTSGKWSDRIKAIIPLLVPLFISAFKRAEDLAIAMEARGYRGGKGRTRFRLLRWRFADTFLLISLAVLSGLLFWLRS
>NZ_CP019621.1|WP_014602250.1|2713698_2714565_-|energy-coupling-factor-ABC-transporter-ATP-binding-protein
MEIKLEQLGYCYQKNSPFEKRALLDVNVSFDSGSYSAIIGHTGSGKSTLLQHLNALLMPTEGKITVGDREIVAGVKQKKLRDLRKKVGIVFQFPEAQLFEETVEKDICFGPMNFGVSEEDAKLRAKKVIYEVGLTEEILSRSPFELSGGQMRRVAIAGVLAMDPEVLVLDEPTAGLDPHGREEIMEMFYNLHKEKGLTTVLVTHSMEDAARYAEKIVLMKAGTVLQIGTPREIFAKPDELVDLGLSVPDVVRFQGLFERKFDVKLTKTCLTIDELTSEMAPYLAKGGA

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Crispr_ID: NZ_CP019621_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP019621_3

2805914-2806022

Orphan

Consensus_repeat	Method
AGAACTTTCAAAATGTACTTTATTTTGATTTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP019621_3

>merge|NZ_CP019621|3|2805914-2806022|CRISPRCasFinder
AGAACTTTCAAAATGTACTTTATTTTGATTTAGTTCTTCAATATAAATCTGAGCGCAGCGATGATTTAATCCTTCCCAGAACTTTCAAAATGTACTTTATTTTGATTTA

>NZ_CP019621|3|3|2805914-2806022|CRISPRCasFinder
AGAACTTTCAAAATGTACTTTATTTTGATTTA	GTTCTTCAATATAAATCTGAGCGCAGCGATGATTTAATCCTTCCC
AGAACTTTCAAAATGTACTTTATTTTGATTTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019621.1\|WP_003732087.1\|2810503_2812018_-\|gluconokinase	unknown	unknown	gnl\|CDD\|212659
NZ_CP019621.1\|WP_003722067.1\|2806813_2807035_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019621.1\|WP_003732084.1\|2804116_2805856_-\|DNA-polymerase-III-subunit-gamma/tau	unknown	unknown	gnl\|CDD\|235505
NZ_CP019621.1\|WP_003722065.1\|2806146_2806611_-\|DUF3284-domain-containing-protein	unknown	unknown	gnl\|CDD\|378692
NZ_CP019621.1\|WP_003732088.1\|2812133_2813072_-\|GW-domain-containing-glycosaminoglycan-binding-protein	unknown	unknown	gnl\|CDD\|226309
NZ_CP019621.1\|WP_003722070.1\|2809164_2809806_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019621.1\|WP_003722063.1\|2803769_2804087_-\|YbaB/EbfC-family-nucleoid-associated-protein	unknown	unknown	gnl\|CDD\|234669
NZ_CP019621.1\|WP_003732079.1\|2797895_2798885_+\|dihydroxyacetone-kinase-subunit-DhaK	unknown	unknown	gnl\|CDD\|237724
NZ_CP019621.1\|WP_077287056.1\|2800956_2801796_+\|Cof-type-HAD-IIB-family-hydrolase	unknown	unknown	gnl\|CDD\|319818
NZ_CP019621.1\|WP_003722074.1\|2813114_2814062_-\|LPXTG-cell-wall-anchor-domain-containing-protein	unknown	unknown	gnl\|CDD\|273478
NZ_CP019621.1\|WP_003722058.1\|2799986_2800838_+\|MurR/RpiR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224651
NZ_CP019621.1\|WP_009913205.1\|2799506_2799881_+\|PTS-dependent-dihydroxyacetone-kinase-phosphotransferase-subunit-DhaM	unknown	unknown	gnl\|CDD\|184702
NZ_CP019621.1\|WP_012951102.1\|2798906_2799503_+\|dihydroxyacetone-kinase-subunit-L	unknown	unknown	gnl\|CDD\|274099
NZ_CP019621.1\|WP_003722075.1\|2814202_2815942_-\|thiol-reductant-ABC-exporter-subunit-CydC	unknown	unknown	gnl\|CDD\|227320
NZ_CP019621.1\|WP_009931159.1\|2801916_2802759_+\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|223729
NZ_CP019621.1\|WP_003722069.1\|2808976_2809132_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019621.1\|WP_003722062.1\|2803064_2803661_-\|recombination-protein-RecR	unknown	unknown	gnl\|CDD\|234616
NZ_CP019621.1\|WP_003722061.1\|2802804_2803050_-\|YaaL-family-protein	unknown	unknown	gnl\|CDD\|378478
NZ_CP019621.1\|WP_003722068.1\|2807169_2808534_-\|PTS-sugar-transporter-subunit-IIC	unknown	unknown	gnl\|CDD\|224372
NZ_CP019621.1\|WP_003727657.1\|2806628_2806811_-\|DUF3188-domain-containing-protein	unknown	unknown	gnl\|CDD\|371501

Protein	Function_ID	Function_description	E-value
NZ_CP019621.1\|WP_003732087.1\|2810503_2812018_-\|gluconokinase	gnl\|CDD\|212659	cd07770, FGGY_GntK, Gluconate kinases; a subfamily of the FGGY family of carbohydrate kinases. This subfamily is composed of a group of gluconate kinases (GntK, also known as gluconokinase; EC 2.7.1.12) encoded by the gntK gene, which catalyzes the ATP-dependent phosphorylation of D-gluconate and produce 6-phospho-D-gluconate and ADP. The presence of Mg2+ might be required for catalytic activity. The prototypical member of this subfamily is GntK from Lactobacillus acidophilus. Unlike Escherichia coli GntK, which belongs to the superfamily of P-loop containing nucleoside triphosphate hydrolases, members in this subfamily are homologous to glycerol kinase, xylulose kinase, and rhamnulokinase from Escherichia coli. They have been classified as members of the FGGY family of carbohydrate kinases, which contain two large domains separated by a deep cleft that forms the active site. This model spans both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Some uncharacterized homologous sequences are also included in this subfamily. The Lactobacillus gnt operon contains a single gntK gene. The gnt operons of some bacteria, such as Corynebacterium glutamicum, have two gntK genes. For example, the C. glutamicum gnt operon has both a gluconate kinase gntV gene (also known as gntK) and a second hypothetical gntK gene (also known as gntK2). Both gluconate kinases encoded by these genes belong to this family, however the protein encoded by C. glutamicum gntV is not included in this model as it is truncated in the C-terminal domain.	0
NZ_CP019621.1\|WP_003732088.1\|2812133_2813072_-\|GW-domain-containing-glycosaminoglycan-binding-protein	gnl\|CDD\|226309	COG3786, COG3786, Uncharacterized protein conserved in bacteria [Function unknown].	3.04876e-98
NZ_CP019621.1\|WP_003732084.1\|2804116_2805856_-\|DNA-polymerase-III-subunit-gamma/tau	gnl\|CDD\|235505	PRK05563, PRK05563, DNA polymerase III subunits gamma and tau; Validated.	0
NZ_CP019621.1\|WP_003722065.1\|2806146_2806611_-\|DUF3284-domain-containing-protein	gnl\|CDD\|378692	pfam11687, DUF3284, Domain of unknown function (DUF3284). This family of proteins with unknown function appears to be restricted to Firmicutes.	5.35099e-31
NZ_CP019621.1\|WP_003722075.1\|2814202_2815942_-\|thiol-reductant-ABC-exporter-subunit-CydC	gnl\|CDD\|227320	COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones].	0
NZ_CP019621.1\|WP_003722063.1\|2803769_2804087_-\|YbaB/EbfC-family-nucleoid-associated-protein	gnl\|CDD\|234669	PRK00153, PRK00153, YbaB/EbfC family nucleoid-associated protein.	3.53269e-41
NZ_CP019621.1\|WP_003732079.1\|2797895_2798885_+\|dihydroxyacetone-kinase-subunit-DhaK	gnl\|CDD\|237724	PRK14481, PRK14481, dihydroxyacetone kinase subunit DhaK; Provisional.	0
NZ_CP019621.1\|WP_077287056.1\|2800956_2801796_+\|Cof-type-HAD-IIB-family-hydrolase	gnl\|CDD\|319818	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily. Escherichia coli Cof is involved in the hydrolysis of HMP-PP (4-amino-2-methyl-5-hydroxymethylpyrimidine pyrophosphate, an intermediate in thiamin biosynthesis), Cof also has phosphatase activity against the coenzymes pyridoxal phosphate (PLP) and FMN. Thermotoga maritima TM0651 acts as a phosphatase with a phosphorylated carbohydrate molecule as a possible substrate. Escherichia coli YbhA is also a member of this family and catalyzes the dephosphorylation of PLP, YbhA can also hydrolyze erythrose-4-phosphate and fructose-1,6-bis-phosphate. Members of this family belong to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	1.02151e-84
NZ_CP019621.1\|WP_003722074.1\|2813114_2814062_-\|LPXTG-cell-wall-anchor-domain-containing-protein	gnl\|CDD\|273478	TIGR01167, Zinc_metalloprotease_ZmpB, LPXTG-motif cell wall anchor domain. This model describes the LPXTG motif-containing region found at the C-terminus of many surface proteins of Streptococcus and Streptomyces species. Cleavage between the Thr and Gly by sortase or a related enzyme leads to covalent anchoring at the new C-terminal Thr to the cell wall. Hits that do not lie at the C-terminus or are not found in Gram-positive bacteria are probably false-positive. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region. [Cell envelope, Other].	1.13667e-05
NZ_CP019621.1\|WP_003722058.1\|2799986_2800838_+\|MurR/RpiR-family-transcriptional-regulator	gnl\|CDD\|224651	COG1737, RpiR, Transcriptional regulators [Transcription].	1.27215e-62
NZ_CP019621.1\|WP_009913205.1\|2799506_2799881_+\|PTS-dependent-dihydroxyacetone-kinase-phosphotransferase-subunit-DhaM	gnl\|CDD\|184702	PRK14484, PRK14484, phosphotransferase mannnose-specific family component IIA; Provisional.	2.28713e-49
NZ_CP019621.1\|WP_012951102.1\|2798906_2799503_+\|dihydroxyacetone-kinase-subunit-L	gnl\|CDD\|274099	TIGR02365, dha_L_ycgS, dihydroxyacetone kinase, phosphoprotein-dependent, L subunit. Two types of dihydroxyacetone kinase (glycerone kinase) are described. In yeast and a few bacteria, e.g. Citrobacter freundii, the enzyme is a single chain that uses ATP as phosphoryl donor and is designated EC 2.7.1.29. By contract, E. coli and many other bacterial species have a multisubunit form (EC 2.7.1.-) with a phosphoprotein donor related to PTS transport proteins. This family represents the subunit homologous to the E. coli YcgS subunit.	1.69543e-82
NZ_CP019621.1\|WP_009931159.1\|2801916_2802759_+\|aldo/keto-reductase	gnl\|CDD\|223729	COG0656, ARA1, Aldo/keto reductases, related to diketogulonate reductase [General function prediction only].	6.97706e-130
NZ_CP019621.1\|WP_003722062.1\|2803064_2803661_-\|recombination-protein-RecR	gnl\|CDD\|234616	PRK00076, recR, recombination protein RecR; Reviewed.	7.77001e-132
NZ_CP019621.1\|WP_003722061.1\|2802804_2803050_-\|YaaL-family-protein	gnl\|CDD\|378478	pfam10704, DUF2508, Protein of unknown function (DUF2508). This family is conserved in Firmicutes. Several members are annotated as being the protein YaaL. The function is not known.	2.68189e-15
NZ_CP019621.1\|WP_003722068.1\|2807169_2808534_-\|PTS-sugar-transporter-subunit-IIC	gnl\|CDD\|224372	COG1455, CelB, Phosphotransferase system cellobiose-specific component IIC [Carbohydrate transport and metabolism].	2.23295e-162
NZ_CP019621.1\|WP_003727657.1\|2806628_2806811_-\|DUF3188-domain-containing-protein	gnl\|CDD\|371501	pfam11384, DUF3188, Protein of unknown function (DUF3188). This bacterial family of proteins has no known function.	1.21027e-11

>NZ_CP019621.1|WP_003732084.1|2804116_2805856_-|DNA-polymerase-III-subunit-gamma/tau
MAYQALYRVFRPQSFQDVVGQEHVTKTLKNAIVQNKTSHAYLFSGPRGTGKTSAAKIFAKAINCEHGHDGEPCNECEICKGTTDGSIPDVLEIDAASNNGVEEIRDIREKVKYAPTVAKYKVYIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISRVQRFDFKRITTQDIIGRLKFILEEEKIPYDEKALMIVARAAEGGMRDALSLLDQVISYGSEEVTVEDALEITGSVAQNLLTKLVSAAFDGDAAEAISTLTALLAEGKDPVRLVEDLLVFFRDVLLYQKAPNLEETMERALIDDDFVALAKRADSLKVYEFVKILNTAQQQMRFSNHPGIYVEVALVQLTQAGQSVAGGGNVPADAASGSDVSDLKRQMEQMHQEIQTLKKQIASGAGAAPADKPTQNRGGSKKAINNGKQFKAPIGKINHVLGEAKKENLQLIRGCWGELLSMLMASQAALLNDAEPVAASQDTFVLKFKHEIHCQMAMDNPNFVETITSSIARLTQVNYTFIGIPEDQWADVRENFLHSHGSDADAEDGANPEAKKPAEDPFVAEAAKLVGEDLLEIKD
>NZ_CP019621.1|WP_003722063.1|2803769_2804087_-|YbaB/EbfC-family-nucleoid-associated-protein
MRGMGNMQGMMKQMQKMQKEMAKAQADLEAQEFTGTAGGGMVTVKATGKRVITDVVINEEVVDPEDIEMLQDLVLAATNDVLKQIEDTTSQTMGKFTQGLNIPGM
>NZ_CP019621.1|WP_003722062.1|2803064_2803661_-|recombination-protein-RecR
MHYPEPITKLIDSFMKLPGIGPKSAARLAFYVLDMKEDDVLDFAKALVDAKRNLSFCSVCGHITDKDPCYICADTSRDRSVICVVQESKDVIAMEKMRDFHGLYHVLHGTISPMDGIGPEDINIPDLLKRLQDDTIEEVILATNPNVEGEATAMYISRLLKPSGIKVTRIAHGLPVGGDLEYADEVTLSKAMEGRREV
>NZ_CP019621.1|WP_003722061.1|2802804_2803050_-|YaaL-family-protein
MESRSNKFGRKKNKKIGKLHKSYDAYLMELIEVTQENWHKQKVLMRKSFEYDPNLEYEEKKAEARYFYLFKEARTRQLKNK
>NZ_CP019621.1|WP_009931159.1|2801916_2802759_+|aldo/keto-reductase
MTLSFSDTYRLNNGIEMPRHGFGVYKLTDEARMRTALETAVDVGYRLFDTASFYHNEKELGDFFASSGLKRDEFFVTTKMWNTEQGYDETLRAFEKSQKKLQLDQIDLYLVHWPKQDTFFDTWRAVEKLYDEGLVRAIGVSNFEAHHLDRLRTSANVLPVVDQLETHPHFPNHLLHRYLEELHIVHQAWSPLGRGGVLQEQILIDLAEKHGKSPAQIVLRWHLQNNISIIPKSETPSRIRENAAIYDFELSEADMRQVERLNTGERVSHAPDVMYVRSEI
>NZ_CP019621.1|WP_077287056.1|2800956_2801796_+|Cof-type-HAD-IIB-family-hydrolase
MTTQAIILDIDGTLLNDDKKISPETKKALITAQQNGVKLILASGRPTTGMHVYAEQLEMEKHHGLLVSYNGAKVVDCATSEELFNQALTVEEGKAVLEHMKQFEVKVMIDKEDYMYTNDVYDCYVPYRGEVINIVQYESRGGNFKLCEKDDLAAFLDYRLSKILTAGDPAYMQKNYQAMMAPFKDTLNCVFTADFYFEFTAQGIDKAKALDTVLTPMGIHAENIIAFGDGHNDITMVEYAGTGIAMQNAVVELKAAASSVTLSNNEDGIAHVLNSLIPS
>NZ_CP019621.1|WP_003722058.1|2799986_2800838_+|MurR/RpiR-family-transcriptional-regulator
MNILIKIRELTNLTNSEKELANYILANPKKTLQFKPKELAAAAFVSAATIYRLINKLGLNGIGELKIEIASSLRETNAEKDINYDYPILESDTPYQIMTNLNQIYKGTIDETLNNADPEELVKIGEKLINAKTIDVYAASANLFFAQNFKFQMQEIGVLVNVPEEDYIQSLSAANSDENHIAIVVSYGGRSRTLQRVVKILSENNVDIILITSMQDNPLVEFATHKIYMASAENHYNKVSSFSTRQSLLSIFDTLYSIYFNQNYEKNIQYKTTNYQKMNTELE
>NZ_CP019621.1|WP_009913205.1|2799506_2799881_+|PTS-dependent-dihydroxyacetone-kinase-phosphotransferase-subunit-DhaM
MTKPYGVVIISHSKDVAKGVHDIIKEIAPDVSITHAGGTEDGRIGTSFDAVNEAIESNEADKVYTFYDLGSAKMNIETVEEISEKEIILFNAPILEGAYATAAQVQMDEKPEVIAANLKTIEIK
>NZ_CP019621.1|WP_012951102.1|2798906_2799503_+|dihydroxyacetone-kinase-subunit-L
MTYDKDWALRWLNDFGERVQENKQLLSDLDQAIGDGDHGINMARGLSELKKVFTEKEPADLKDVFKTAGMTMVSKVGGASGPLYGTAFLNMSKAVDADTIDAVGLTKVIEAGLEGIEKRGKSHAGEKTMIDVWEPVVHALHQEDLTDDVVDAALQKTKDLKATKGRASYLGERSIGHLDPGAYSSALLFHAMLQTEVS
>NZ_CP019621.1|WP_003732079.1|2797895_2798885_+|dihydroxyacetone-kinase-subunit-DhaK
MKKILNGTDQVVEQMVEGLVKSHADVVHRVEGTRVIARNDKRPGKVGLVSGGGSGHEPAHAGYVGRGMLSAAVCGDVFTSPTPDQIYEGIKAADQGAGVLLIVKNYTGDVMNFEMAADLADADDIKVEQIVVDDDIAVEDSTFTTGRRGVAGTVLVHKIIGAAAEAGASLDELKALGEKVIASVKTLGVALSPCTVPEVGHPGFELGDDEIELGIGIHGEPGFTREKIMPSASLAKQLYERISNESKLLAGDKVVVLVNGMGATPLMEQYVFANDVHELLKNAGVQVAKTLVGDYMTSLEMAGLSLTILKLEDEKWVDMLKLPVDTIAW
>NZ_CP019621.1|WP_003722065.1|2806146_2806611_-|DUF3284-domain-containing-protein
MNVTQKLYISQKECFDTLVSSAIYDVKNATGKTLQVRKLEGYKYQRTMSNGALATTKIVKVQPNELYQFETSSRVNTHTTTYTIKSTSETTCEVTYNELIETEKALNKMNNIIVGFMFGFFRKKRVKNLLKSIELSVINESKQKQEKLAAKSEQ
>NZ_CP019621.1|WP_003727657.1|2806628_2806811_-|DUF3188-domain-containing-protein
MKIVNALFLISIGLIIIMFSPSYGKDGMASVPLLVTGLAVVLIGCVFIVLKIRKDKKEKN
>NZ_CP019621.1|WP_003722067.1|2806813_2807035_-|hypothetical-protein
MIILNCPMKRDYITELLETYDKDGVTFKKIDEKGMKLTFETNIEDEEKAAKIAKETIKATEIGSVLYFQVSVG
>NZ_CP019621.1|WP_003722068.1|2807169_2808534_-|PTS-sugar-transporter-subunit-IIC
MNGLTAFLEKYFVPVAAKIGSQKHLVALRDAFISTMPITMAGSIAVLLNAFFRDFPTDWGWTGFVEAMQPLIDINGYVYNGTLAIVSIIFAFSLGYNLSKAYEVDRLAGGLVSLAAFVMNLTVTVSLDAVKAAIAASNANFDVATLPKEFAGIYGFFSLSQVNGTGLFTAMIFGFISTIIYAKLMRRNIIIKMPDSVPPAVSKAFAAIIPALVALYVVGIIDWAFFKITNMDVITWISKTIQEPLLSLSQGYGAVLLVTFLVQLLWFFGIHGPNVLAPVLESLWGTAQLQNISAAQEGAKLPFEWVRGSFDAYVWMGGSGGTLVLIIALLMFSKRADARTVAKLSLAPGIFNINEPIMFGLPIVLNTIYLIPFLIAPMVMVTIAYFATTLGIVGPVKIAVVWVMPPLLNSFLATGGDWMAPVISLINMVVAFLIWVPFVITANRVGVPEEEMKA
>NZ_CP019621.1|WP_003722069.1|2808976_2809132_+|hypothetical-protein
MAVKRDMPEESKNSKVVKKEHFSIVFPDDIKEPKNASEQKKQDVEKKTDDN
>NZ_CP019621.1|WP_003722070.1|2809164_2809806_-|hypothetical-protein
MQQLKSKKKWLPALIVAVFVGIIVILAIMFGFFQRQEVFDKYEVAYEIDGKLYEVFPISATDIGVDKKSKDKNLYFRVNSYYNIDYLFRLAYKQYEINEPSTNKYYSGLIDYSVADNAYVTQKDVYITNNESYATYDFFDKNGKKIYSYNPEETSNDDYIVRIKPTILQGYEKSDIGSYDDYLNITALFKDKLGMDVNVRIDEDKEMVIFSIK
>NZ_CP019621.1|WP_003732087.1|2810503_2812018_-|gluconokinase
MTSKPYIMGVDIGTSSTKAVLFNQRGEVIFRQATHYELITDETGKAEESPTEIFDAVLTSIQAVMKNINTEELAGISFSSAMHSLIMVGSNGELLTECITWADGRSSETLEKVKRDNYLFQLYEATGTPIHPMSPFAKICWLKEEKPTLFKRTEKFVDIKSYILYRLFGVWVMDESLASGTGLYNIMEHDWEFEAMEIVKLTPDFLPKVVPETYQLAGVKKEYAELMGIPENLPFIIGGSDGALANIGIQATGQNDVTITVGTSGAVRKLTDQFQIDSRGRTFCYGAGDGYFIAGGAVNNGGKVVEWGLQQFGSEAEISRRDFASFIAKIEEVPPGAAGLLFQPYLLGERAPFWTNDIRGGFVGLTINHTKAHFIRAILEGVAFNLAEVYEAVSAPDDIIYVTGGISAHDAWCKLLADILNREIRVPHTIEGSSLGAAIIGMRSLGILKDLNLKHTLPIKAVYHPSENVLKYAELRLIFKQVTTQLMSSYSQLNSWQKKFDINS
>NZ_CP019621.1|WP_003732088.1|2812133_2813072_-|GW-domain-containing-glycosaminoglycan-binding-protein
MKKLLSGLIVVLMVSLLGHSFNAEAASYEKIIYDKAVNLKGVVNQSKRNDGINSKMYKTSSSVKYLGSAKKYDKKTLIITREGKTARAKWYYCKLGNTTIGWIDSRAFTNIGKPTIADAVPALWNSKKAIITTKPKSTTATTYFFQKNSAGNWYEVRHFTSHIGKWGFDPKFSEKSSGTPVGVYRTGIAFGQKGNPGTKLTFRAITNRSYWISNSNDKAYNTWQERNSSSSADEKMKIPQYKYGMEVKYNAKRVKGKGSAVFYHVDSPKYNYTLGCVAQSEANTKEVLKFADKNTLIVLGEESRIKTFYGIN
>NZ_CP019621.1|WP_003722074.1|2813114_2814062_-|LPXTG-cell-wall-anchor-domain-containing-protein
MKKFHGLILTALVTCLIIPFSLAASAETNENGNNSTPTEEKTTDTTENIITEEKTEPAEPTKDTTVTPPQKSKVQTTIDITDSQEVYSYEQNSKIDLKDFTATLTDYTDTKLTNYRLAANSKLSTAQTGIQEVTLLGDNEDGKTTAVKLNYLVKEKTAQLTITDMNFDLETKIFTGKTKPFASVYMSSPADENFGEGTTTADKDGYFYAEWATTPKQITAYAFDESGNYSEEVTYQVPAKKQNEAVVTAPDKVKKIETKNAVKSATTKPTDVTKVTKDDKTDLPSTGDKGTEWIFVVAGVIVILVAVLLLRKRKK
>NZ_CP019621.1|WP_003722075.1|2814202_2815942_-|thiol-reductant-ABC-exporter-subunit-CydC
MRKSSWIIPYIKENRGLFLLVIFLGTLTFASAGALMFTSGHLISKSSLMPESIMAVYISTVGVRAFGIMRSVSRYVERLSSHSLVLRILEKMRVRLYRLLEPQALLLKSRYKTGDILGLLAGDIEHLQNFYLTTMLPAIVSLVLYAGVVIALGAFSIPFAALFVLLIGLLVLVLPWVSLLYARGKNAYLKQGRNSLYQKFTDAVFGISDWKFSGREKTFISNYEKDEADMLRTENKQFHFVNWRDFFSQLVVGFMVIVMVYWSTAESRDGAFSGTMIAAFVLAIMALAEAFVPVSSAISDKSLYQDSLARLDKIEDPALPTFEEETKETERINTENVVLKAENLTFAYDEKSPEILNGFDFTLQQGEKVAIIGRSGTGKSTFLKLVQGALLPTAGKVTMNDVEVEKLRPQIPELTSMLNQKAHLFSTTVLNNIRLGNQDASDEEVYEAAKKVQLHDFIMSMPDGYHTQMSEMGERFSGGERGRIALARILLQNTPIVILDEPTVGLDPITERDLLATIFETLADKSLIWVTHHLVGAEKMDRVLFLEEGKTLMEGPHAELMAEEPRYKRLYQLDRPIEL

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP019621_1	1.4\|558136\|34\|NZ_CP019621\|PILER-CR,CRT	558136-558169	34	MT500540	Listeria phage LP-HM00113468, complete genome	26210-26243	0	1.0
NZ_CP019621_1	1.9\|558135\|35\|NZ_CP019621\|CRISPRCasFinder	558135-558169	35	MT500540	Listeria phage LP-HM00113468, complete genome	26209-26243	0	1.0
NZ_CP019621_1	1.2\|558006\|36\|NZ_CP019621\|PILER-CR,CRT	558006-558041	36	JX442241	Listeria phage P70, complete genome	49815-49850	1	0.972
NZ_CP019621_1	1.4\|558136\|34\|NZ_CP019621\|PILER-CR,CRT	558136-558169	34	NC_003216	Listeria phage A118, complete genome	20259-20292	1	0.971
NZ_CP019621_1	1.4\|558136\|34\|NZ_CP019621\|PILER-CR,CRT	558136-558169	34	AJ242593	Bacteriophage A118 complete genome	20259-20292	1	0.971
NZ_CP019621_1	1.4\|558136\|34\|NZ_CP019621\|PILER-CR,CRT	558136-558169	34	X85008	Bacteriophage A118 hol118 and ply118 genes	507-540	1	0.971
NZ_CP019621_1	1.7\|558005\|37\|NZ_CP019621\|CRISPRCasFinder	558005-558041	37	JX442241	Listeria phage P70, complete genome	49814-49850	1	0.973
NZ_CP019621_1	1.9\|558135\|35\|NZ_CP019621\|CRISPRCasFinder	558135-558169	35	NC_003216	Listeria phage A118, complete genome	20259-20293	1	0.971
NZ_CP019621_1	1.9\|558135\|35\|NZ_CP019621\|CRISPRCasFinder	558135-558169	35	AJ242593	Bacteriophage A118 complete genome	20259-20293	1	0.971
NZ_CP019621_1	1.9\|558135\|35\|NZ_CP019621\|CRISPRCasFinder	558135-558169	35	X85008	Bacteriophage A118 hol118 and ply118 genes	507-541	1	0.971
NZ_CP019621_2	2.1\|2703344\|30\|NZ_CP019621\|CRISPRCasFinder,CRT	2703344-2703373	30	DQ003637	Listeria phage A500, complete genome	37232-37261	2	0.933
NZ_CP019621_2	2.1\|2703344\|30\|NZ_CP019621\|CRISPRCasFinder,CRT	2703344-2703373	30	KJ094022	Listeria phage LP-030-3, complete genome	6787-6816	2	0.933
NZ_CP019621_2	2.3\|2703476\|30\|NZ_CP019621\|CRISPRCasFinder,CRT	2703476-2703505	30	KJ094028	Listeria phage LP-083-1 contig 2, partial genome	16035-16064	2	0.933
NZ_CP019621_2	2.3\|2703476\|30\|NZ_CP019621\|CRISPRCasFinder,CRT	2703476-2703505	30	DQ003641	Listeria phage P35, complete genome	31970-31999	2	0.933
NZ_CP019621_1	1.1\|557939\|37\|NZ_CP019621\|PILER-CR,CRT	557939-557975	37	JB137888	Sequence 7 from Patent WO2012159774	397-433	3	0.919
NZ_CP019621_1	1.6\|557938\|38\|NZ_CP019621\|CRISPRCasFinder	557938-557975	38	JB137888	Sequence 7 from Patent WO2012159774	396-433	4	0.895
NZ_CP019621_2	2.2\|2703410\|30\|NZ_CP019621\|CRISPRCasFinder,CRT	2703410-2703439	30	NC_007056	Staphylococcus phage EW, complete genome	21067-21096	6	0.8
NZ_CP019621_2	2.2\|2703410\|30\|NZ_CP019621\|CRISPRCasFinder,CRT	2703410-2703439	30	AY954959	Bacteriophage EW, complete genome	21067-21096	6	0.8
NZ_CP019621_2	2.1\|2703344\|30\|NZ_CP019621\|CRISPRCasFinder,CRT	2703344-2703373	30	KT878766	Staphylococcus phage P1105, complete genome	32141-32170	7	0.767
NZ_CP019621_2	2.1\|2703344\|30\|NZ_CP019621\|CRISPRCasFinder,CRT	2703344-2703373	30	NC_025460	Staphylococcus phage phiSa119, complete genome	7352-7381	7	0.767
NZ_CP019621_2	2.1\|2703344\|30\|NZ_CP019621\|CRISPRCasFinder,CRT	2703344-2703373	30	JN638751	Bacillus phage G, complete genome	221970-221999	8	0.733
NZ_CP019621_2	2.2\|2703410\|30\|NZ_CP019621\|CRISPRCasFinder,CRT	2703410-2703439	30	NZ_LR214939	Mycoplasma salivarium strain NCTC10113 plasmid 2	244510-244539	8	0.733
NZ_CP019621_2	2.2\|2703410\|30\|NZ_CP019621\|CRISPRCasFinder,CRT	2703410-2703439	30	NZ_CP034685	Bacillus sp. BD59S plasmid pBTBD59S2, complete sequence	136145-136174	8	0.733
NZ_CP019621_2	2.2\|2703410\|30\|NZ_CP019621\|CRISPRCasFinder,CRT	2703410-2703439	30	NZ_CP016589	Bacillus thuringiensis strain KNU-07 plasmid pBTKNU07-01, complete sequence	472828-472857	8	0.733
NZ_CP019621_2	2.2\|2703410\|30\|NZ_CP019621\|CRISPRCasFinder,CRT	2703410-2703439	30	MN693930	Marine virus AFVG_250M489, complete genome	21579-21608	8	0.733
NZ_CP019621_2	2.2\|2703410\|30\|NZ_CP019621\|CRISPRCasFinder,CRT	2703410-2703439	30	NZ_CP053657	Bacillus cereus strain CTMA_1571 plasmid p.1, complete sequence	227089-227118	9	0.7
NZ_CP019621_2	2.4\|2703542\|30\|NZ_CP019621\|CRISPRCasFinder,CRT,PILER-CR	2703542-2703571	30	MT952853	Arthrobacter phage Orcanus, complete genome	5749-5778	9	0.7

1. spacer 1.4|558136|34|NZ_CP019621|PILER-CR,CRT matches to MT500540 (Listeria phage LP-HM00113468, complete genome) position: , mismatch: 0, identity: 1.0

tcgccatgacgaaatctagcgcttgtcctactaa	CRISPR spacer
tcgccatgacgaaatctagcgcttgtcctactaa	Protospacer
**********************************

2. spacer 1.9|558135|35|NZ_CP019621|CRISPRCasFinder matches to MT500540 (Listeria phage LP-HM00113468, complete genome) position: , mismatch: 0, identity: 1.0

ttcgccatgacgaaatctagcgcttgtcctactaa	CRISPR spacer
ttcgccatgacgaaatctagcgcttgtcctactaa	Protospacer
***********************************

3. spacer 1.2|558006|36|NZ_CP019621|PILER-CR,CRT matches to JX442241 (Listeria phage P70, complete genome) position: , mismatch: 1, identity: 0.972

tttccatctttctgtaacaaacttgtaacacaaaaa	CRISPR spacer
tttccctctttctgtaacaaacttgtaacacaaaaa	Protospacer
***** ******************************

4. spacer 1.4|558136|34|NZ_CP019621|PILER-CR,CRT matches to NC_003216 (Listeria phage A118, complete genome) position: , mismatch: 1, identity: 0.971

tcgccatgacgaaatctagcgcttgtcctactaa	CRISPR spacer
tcgccatgacgaaatctagcgcttgtcctaccaa	Protospacer
*******************************.**

5. spacer 1.4|558136|34|NZ_CP019621|PILER-CR,CRT matches to AJ242593 (Bacteriophage A118 complete genome) position: , mismatch: 1, identity: 0.971

tcgccatgacgaaatctagcgcttgtcctactaa	CRISPR spacer
tcgccatgacgaaatctagcgcttgtcctaccaa	Protospacer
*******************************.**

6. spacer 1.4|558136|34|NZ_CP019621|PILER-CR,CRT matches to X85008 (Bacteriophage A118 hol118 and ply118 genes) position: , mismatch: 1, identity: 0.971

tcgccatgacgaaatctagcgcttgtcctactaa	CRISPR spacer
tcgccatgacgaaatctagcgcttgtcctaccaa	Protospacer
*******************************.**

7. spacer 1.7|558005|37|NZ_CP019621|CRISPRCasFinder matches to JX442241 (Listeria phage P70, complete genome) position: , mismatch: 1, identity: 0.973

atttccatctttctgtaacaaacttgtaacacaaaaa	CRISPR spacer
atttccctctttctgtaacaaacttgtaacacaaaaa	Protospacer
****** ******************************

8. spacer 1.9|558135|35|NZ_CP019621|CRISPRCasFinder matches to NC_003216 (Listeria phage A118, complete genome) position: , mismatch: 1, identity: 0.971

ttcgccatgacgaaatctagcgcttgtcctactaa	CRISPR spacer
ttcgccatgacgaaatctagcgcttgtcctaccaa	Protospacer
********************************.**

9. spacer 1.9|558135|35|NZ_CP019621|CRISPRCasFinder matches to AJ242593 (Bacteriophage A118 complete genome) position: , mismatch: 1, identity: 0.971

ttcgccatgacgaaatctagcgcttgtcctactaa	CRISPR spacer
ttcgccatgacgaaatctagcgcttgtcctaccaa	Protospacer
********************************.**

10. spacer 1.9|558135|35|NZ_CP019621|CRISPRCasFinder matches to X85008 (Bacteriophage A118 hol118 and ply118 genes) position: , mismatch: 1, identity: 0.971

ttcgccatgacgaaatctagcgcttgtcctactaa	CRISPR spacer
ttcgccatgacgaaatctagcgcttgtcctaccaa	Protospacer
********************************.**

11. spacer 2.1|2703344|30|NZ_CP019621|CRISPRCasFinder,CRT matches to DQ003637 (Listeria phage A500, complete genome) position: , mismatch: 2, identity: 0.933

caagttaaagatatcaactacattcagaca	CRISPR spacer
caagttgaagatattaactacattcagaca	Protospacer
******.*******.***************

12. spacer 2.1|2703344|30|NZ_CP019621|CRISPRCasFinder,CRT matches to KJ094022 (Listeria phage LP-030-3, complete genome) position: , mismatch: 2, identity: 0.933

caagttaaagatatcaactacattcagaca	CRISPR spacer
caagttgaagatattaactacattcagaca	Protospacer
******.*******.***************

13. spacer 2.3|2703476|30|NZ_CP019621|CRISPRCasFinder,CRT matches to KJ094028 (Listeria phage LP-083-1 contig 2, partial genome) position: , mismatch: 2, identity: 0.933

ccgttctgacccttgataaagaattcgtat	CRISPR spacer
ccatcctgacccttgataaagaattcgtat	Protospacer
**.*.*************************

14. spacer 2.3|2703476|30|NZ_CP019621|CRISPRCasFinder,CRT matches to DQ003641 (Listeria phage P35, complete genome) position: , mismatch: 2, identity: 0.933

ccgttctgacccttgataaagaattcgtat	CRISPR spacer
ccatcctgacccttgataaagaattcgtat	Protospacer
**.*.*************************

15. spacer 1.1|557939|37|NZ_CP019621|PILER-CR,CRT matches to JB137888 (Sequence 7 from Patent WO2012159774) position: , mismatch: 3, identity: 0.919

ttattacccctaattatacacgttgtgacacgccccc	CRISPR spacer
atattacccgtaattatacacgttgtgacacgtcccc	Protospacer
 ******** **********************.****

16. spacer 1.6|557938|38|NZ_CP019621|CRISPRCasFinder matches to JB137888 (Sequence 7 from Patent WO2012159774) position: , mismatch: 4, identity: 0.895

tttattacccctaattatacacgttgtgacacgccccc	CRISPR spacer
gatattacccgtaattatacacgttgtgacacgtcccc	Protospacer
  ******** **********************.****

17. spacer 2.2|2703410|30|NZ_CP019621|CRISPRCasFinder,CRT matches to NC_007056 (Staphylococcus phage EW, complete genome) position: , mismatch: 6, identity: 0.8

aatgtaa----agttacttttaaaaaactatcgg	CRISPR spacer
----taacattagttacttttataaaagtatcgg	Protospacer
    ***    *********** **** ******

18. spacer 2.2|2703410|30|NZ_CP019621|CRISPRCasFinder,CRT matches to AY954959 (Bacteriophage EW, complete genome) position: , mismatch: 6, identity: 0.8

aatgtaa----agttacttttaaaaaactatcgg	CRISPR spacer
----taacattagttacttttataaaagtatcgg	Protospacer
    ***    *********** **** ******

19. spacer 2.1|2703344|30|NZ_CP019621|CRISPRCasFinder,CRT matches to KT878766 (Staphylococcus phage P1105, complete genome) position: , mismatch: 7, identity: 0.767

caagttaaagatatcaactacattcagaca	CRISPR spacer
caagttaaagatatgaacaacataccaatt	Protospacer
************** *** **** * .*.

20. spacer 2.1|2703344|30|NZ_CP019621|CRISPRCasFinder,CRT matches to NC_025460 (Staphylococcus phage phiSa119, complete genome) position: , mismatch: 7, identity: 0.767

caagttaaagatatcaactacattcagaca	CRISPR spacer
caagttaaagatatgaacaacataccaatt	Protospacer
************** *** **** * .*.

21. spacer 2.1|2703344|30|NZ_CP019621|CRISPRCasFinder,CRT matches to JN638751 (Bacillus phage G, complete genome) position: , mismatch: 8, identity: 0.733

caagttaaagatatcaactacattcagaca	CRISPR spacer
aaagttaaaggtatcaactacaaggattta	Protospacer
 *********.***********   *  .*

22. spacer 2.2|2703410|30|NZ_CP019621|CRISPRCasFinder,CRT matches to NZ_LR214939 (Mycoplasma salivarium strain NCTC10113 plasmid 2) position: , mismatch: 8, identity: 0.733

aatgtaaagttacttttaaaaaactatcgg	CRISPR spacer
aatctaaagttactgttaaaaaagctttac	Protospacer
*** ********** ******** . *..

23. spacer 2.2|2703410|30|NZ_CP019621|CRISPRCasFinder,CRT matches to NZ_CP034685 (Bacillus sp. BD59S plasmid pBTBD59S2, complete sequence) position: , mismatch: 8, identity: 0.733

aatgtaaagttacttttaaaaaactatcgg	CRISPR spacer
aaagtaatgttacttttaaaaaatgaagtt	Protospacer
** **** ***************. *

24. spacer 2.2|2703410|30|NZ_CP019621|CRISPRCasFinder,CRT matches to NZ_CP016589 (Bacillus thuringiensis strain KNU-07 plasmid pBTKNU07-01, complete sequence) position: , mismatch: 8, identity: 0.733

aatgtaaagttacttttaaaaaactatcgg	CRISPR spacer
aatgtaaattttcttttaaaaaaattcgaa	Protospacer
******** ** *********** * . ..

25. spacer 2.2|2703410|30|NZ_CP019621|CRISPRCasFinder,CRT matches to MN693930 (Marine virus AFVG_250M489, complete genome) position: , mismatch: 8, identity: 0.733

aatgtaaagttacttttaaaaaactatcgg	CRISPR spacer
taccaaaagtaacatttaaaaaactatcat	Protospacer
 *.  ***** ** **************.

26. spacer 2.2|2703410|30|NZ_CP019621|CRISPRCasFinder,CRT matches to NZ_CP053657 (Bacillus cereus strain CTMA_1571 plasmid p.1, complete sequence) position: , mismatch: 9, identity: 0.7

aatgtaaagttacttttaaaaaactatcgg	CRISPR spacer
gaactaaaattacttttaaaaaactcattc	Protospacer
.*  ****.****************  .

27. spacer 2.4|2703542|30|NZ_CP019621|CRISPRCasFinder,CRT,PILER-CR matches to MT952853 (Arthrobacter phage Orcanus, complete genome) position: , mismatch: 9, identity: 0.7

tttcaacgggaagaagggcgcttccctaaa	CRISPR spacer
cctcgacgggcagaagggcgcttccggctc	Protospacer
..**.***** **************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

126599 : 133124

Listeria_phage(33.33%)

tail

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003721739.1\|126599_127052_-	ImmA/IrrE family metallo-endopeptidase	A0A059T7S0	Listeria_phage	4.0e-31	47.9
WP_003721740.1\|127057_127393_-	helix-turn-helix transcriptional regulator	A0A2H4JAR9	uncultured_Caudovirales_phage	4.0e-20	52.5
WP_003732219.1\|127609_128038_+	hypothetical protein	NA	NA	NA	NA
WP_014931069.1\|128049_128466_+	hypothetical protein	A8ASQ1	Listeria_phage	7.7e-21	39.3
WP_012952083.1\|128743_129133_+	DUF5072 family protein	NA	NA	NA	NA
WP_003721744.1\|129145_129658_+\|tail	phage major tail protein, TP901-1 family	A0A097PBF4	Streptococcus_pyogenes_phage	1.2e-47	62.7
WP_003721745.1\|129705_130008_+	hypothetical protein	NA	NA	NA	NA
WP_077286423.1\|130049_130454_+	phenylalanine racemase	NA	NA	NA	NA
WP_061668391.1\|130440_132309_+	hypothetical protein	A0A097PAU2	Streptococcus_pyogenes_phage	3.5e-20	45.8
WP_061394756.1\|132305_133124_+\|tail	phage tail family protein	A0A060AFE1	Staphylococcus_phage	4.2e-39	35.0

DBSCAN-SWA_2

1134451 : 1141873

Hokovirus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003721506.1\|1134451_1134835_+	glycerol-3-phosphate cytidylyltransferase	A0A1V0SGE7	Hokovirus	1.4e-16	40.7
WP_077286682.1\|1134856_1135840_+	glycosyltransferase family 2 protein	A0A1V0SAH6	Catovirus	4.1e-12	34.6
WP_010989660.1\|1135854_1136868_+	glycosyltransferase	A0A1V0SAH6	Catovirus	7.9e-11	32.0
WP_003721509.1\|1137076_1138567_+	nicotinate phosphoribosyltransferase	G3MA18	Bacillus_virus	9.5e-114	49.7
WP_033918355.1\|1138578_1139403_+	ammonia-dependent NAD(+) synthetase	G3MA24	Bacillus_virus	9.7e-68	52.9
WP_039384194.1\|1139415_1139724_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_003730540.1\|1139783_1140188_+	PTS sugar transporter subunit IIB	NA	NA	NA	NA
WP_077286684.1\|1140316_1141873_+	glutamine-hydrolyzing GMP synthase	A0A1V0SH76	Hokovirus	2.3e-17	28.1

DBSCAN-SWA_3

1276743 : 1335458

Bacillus_virus(16.67%)

protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003723562.1\|1276743_1277883_-\|protease	PrsW family intramembrane metalloprotease	NA	NA	NA	NA
WP_003723563.1\|1277963_1278359_-	helix-turn-helix transcriptional regulator	A9D9J6	Lactobacillus_prophage	1.3e-14	57.4
WP_003727524.1\|1278509_1278725_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_010989719.1\|1278843_1279377_+\|protease	matrixin family metalloprotease	NA	NA	NA	NA
WP_003732795.1\|1279394_1280060_+	hypothetical protein	NA	NA	NA	NA
WP_003732796.1\|1280321_1281260_+	hypothetical protein	NA	NA	NA	NA
WP_003723884.1\|1281374_1282658_+	trigger factor	NA	NA	NA	NA
WP_003723886.1\|1282842_1284102_+\|protease	ATP-dependent protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	1.4e-145	63.2
WP_003723887.1\|1284220_1284787_+	type I signal peptidase SipX	NA	NA	NA	NA
WP_003723888.1\|1284821_1285391_+	type I signal peptidase SipY	NA	NA	NA	NA
WP_003723889.1\|1285492_1286035_+	type I signal peptidase SipZ	NA	NA	NA	NA
WP_003723890.1\|1286044_1286908_+	ribosome biogenesis GTPase YlqF	NA	NA	NA	NA
WP_077286724.1\|1286904_1287690_+	ribonuclease HII	G4YAY0	Emiliania_huxleyi_virus	2.3e-26	39.2
WP_003723892.1\|1287823_1288684_+	DNA-protecting protein DprA	NA	NA	NA	NA
WP_009924617.1\|1288954_1291033_+	type I DNA topoisomerase	A0A1V0SB35	Catovirus	1.4e-107	37.7
WP_010989721.1\|1291095_1292400_+\|tRNA	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	NA	NA	NA	NA
WP_077286726.1\|1292682_1293585_+	tyrosine recombinase XerC	A0A2H4PCY2	Mycobacterium_phage	1.2e-13	28.4
WP_003724001.1\|1293605_1294145_+\|protease	ATP-dependent protease subunit HslV	NA	NA	NA	NA
WP_010989722.1\|1294158_1295568_+\|protease	ATP-dependent protease ATPase subunit HslU	W6AS21	Erwinia_phage	4.9e-43	27.7
WP_003726695.1\|1295588_1296368_+	GTP-sensing pleiotropic transcriptional regulator CodY	NA	NA	NA	NA
WP_003724129.1\|1296470_1296890_+	acyl-CoA thioesterase	NA	NA	NA	NA
WP_003724130.1\|1296912_1297224_+	hypothetical protein	NA	NA	NA	NA
WP_009932949.1\|1297226_1298099_+	aldose 1-epimerase family protein	NA	NA	NA	NA
WP_003724132.1\|1298140_1298737_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA
WP_003732802.1\|1298894_1299302_+	CoA-binding protein	NA	NA	NA	NA
WP_003723731.1\|1299482_1301450_+	DNA topoisomerase IV subunit B	G3M9Z3	Bacillus_virus	6.7e-123	42.5
WP_010989723.1\|1301446_1303906_+	DNA topoisomerase IV subunit A	G3M9Z5	Bacillus_virus	4.7e-102	31.6
WP_003723733.1\|1303988_1304456_+	S-ribosylhomocysteine lyase	NA	NA	NA	NA
WP_003732805.1\|1304785_1306579_+	lmo1289 family class 1 internalin	NA	NA	NA	NA
WP_077286728.1\|1306910_1308707_+	class 1 internalin InlK	NA	NA	NA	NA
WP_014601964.1\|1308739_1310608_-	peptidoglycan O-acetyltransferase OatA	B5WZU0	Pseudomonas_phage	6.5e-43	31.9
WP_009925395.1\|1310820_1311519_+	glycerophosphodiester phosphodiesterase	A0A0S2MYI4	Enterococcus_phage	9.9e-13	32.4
WP_003723738.1\|1311751_1313428_+	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA
WP_012951578.1\|1313553_1314471_+\|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	NA	NA	NA	NA
WP_003719566.1\|1314593_1314827_+	RNA chaperone Hfq	NA	NA	NA	NA
WP_072219379.1\|1314937_1316161_+	GTPase HflX	NA	NA	NA	NA
WP_054314292.1\|1316153_1317380_+	methionine gamma-lyase family protein	NA	NA	NA	NA
WP_003719570.1\|1317583_1317952_+	MerR family transcriptional regulator	NA	NA	NA	NA
WP_003723435.1\|1318022_1319357_+	type I glutamate--ammonia ligase	A0A1V0SJ53	Klosneuvirus	2.0e-06	26.4
WP_003723436.1\|1319500_1320796_+	arsenical efflux pump membrane protein ArsB	A0A2H4PQU3	Staphylococcus_phage	1.8e-145	61.6
WP_003723437.1\|1320839_1321361_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_003723438.1\|1321390_1322005_-	transcriptional repressor LexA	A0A1B2APZ1	Phage_Wrath	9.3e-15	62.1
WP_003723439.1\|1322161_1322491_+	cell division suppressor protein YneA	NA	NA	NA	NA
WP_014601966.1\|1322582_1322810_+	DUF896 domain-containing protein	NA	NA	NA	NA
WP_077286730.1\|1322947_1324165_+	hypothetical protein	NA	NA	NA	NA
WP_003723442.1\|1324385_1324625_+	YneF family protein	NA	NA	NA	NA
WP_003723443.1\|1324675_1325518_-	DUF2785 domain-containing protein	NA	NA	NA	NA
WP_003723444.1\|1325536_1326268_-	methyltransferase domain-containing protein	A0A1X9I6N4	Streptococcus_phage	1.2e-80	59.1
WP_003723445.1\|1326289_1326796_-	ParB-like nuclease domain-containing protein	A0A220GKT8	Streptococcus_phage	4.0e-56	66.7
WP_003723446.1\|1326805_1328110_-	DUF3440 domain-containing protein	A0A220GKF8	Streptococcus_phage	9.5e-134	52.1
WP_010989732.1\|1328099_1329305_-	helicase SNF2	L0P6E9	Lactobacillus_phage	4.9e-92	47.1
WP_003723448.1\|1329282_1329657_-	hypothetical protein	NA	NA	NA	NA
WP_003723449.1\|1329949_1330678_+	UMP kinase	NA	NA	NA	NA
WP_003723450.1\|1330677_1331235_+	ribosome recycling factor	NA	NA	NA	NA
WP_003732812.1\|1331464_1332223_+	isoprenyl transferase	R9W0U9	Flavobacterium_phage	4.4e-22	42.1
WP_003727496.1\|1332236_1333025_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA
WP_014601969.1\|1333039_1334182_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA
WP_003723454.1\|1334195_1335458_+\|protease	RIP metalloprotease RseP	NA	NA	NA	NA

DBSCAN-SWA_4

1820735 : 1829021

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003722243.1\|1820735_1821302_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	7.0e-25	35.9
WP_061395484.1\|1821298_1822348_-	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	1.2e-62	44.1
WP_003722245.1\|1822366_1823794_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	1.1e-53	34.6
WP_014602076.1\|1823778_1825998_-	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	1.3e-159	41.2
WP_003733240.1\|1825990_1826674_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_003722248.1\|1826677_1826923_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_014931516.1\|1826934_1827648_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A0E3F9V5	Synechococcus_phage	8.8e-41	37.8
WP_003729814.1\|1827728_1829021_-	adenylosuccinate lyase	A0A1B3B081	Gordonia_phage	2.5e-17	33.0

DBSCAN-SWA_5

2094719 : 2107433

Streptococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_077286838.1\|2094719_2095034_+	YdcP family protein	A0A1S5SF38	Streptococcus_phage	3.8e-41	75.7
WP_061112777.1\|2095045_2095411_+	YdcP family protein	A0A1S5SF96	Streptococcus_phage	1.0e-45	76.4
WP_061112778.1\|2095423_2096206_+	hypothetical protein	NA	NA	NA	NA
WP_061112779.1\|2096251_2097616_+	DUF87 domain-containing protein	A0A1S5SFB5	Streptococcus_phage	5.0e-178	67.8
WP_077286840.1\|2097808_2098993_+	replication initiation factor domain-containing protein	A0A1S5SEX3	Streptococcus_phage	2.0e-151	65.3
WP_061112781.1\|2098989_2099277_+	hypothetical protein	NA	NA	NA	NA
WP_002376827.1\|2099279_2099501_+	hypothetical protein	A0A1S5SEY0	Streptococcus_phage	3.4e-28	87.7
WP_061112782.1\|2099497_2099968_-	hypothetical protein	NA	NA	NA	NA
WP_061112783.1\|2099989_2100262_-	hypothetical protein	NA	NA	NA	NA
WP_061112784.1\|2100398_2100899_+	antirestriction protein ArdA	A0A1S5SF25	Streptococcus_phage	4.7e-57	65.4
WP_061112785.1\|2100950_2101493_+	hypothetical protein	NA	NA	NA	NA
WP_061112786.1\|2101566_2101959_+	conjugal transfer protein	A0A1S5SEX7	Streptococcus_phage	6.1e-44	66.2
WP_061112787.1\|2101942_2104393_+	ATP-binding protein	A0A1S5SF64	Streptococcus_phage	0.0e+00	82.8
WP_061112788.1\|2104392_2106426_+	hypothetical protein	A0A1S5SF30	Streptococcus_phage	1.3e-193	63.9
WP_061112789.1\|2106422_2107433_+	bifunctional lysozyme/C40 family peptidase	A0A1S5SEZ8	Streptococcus_phage	6.0e-128	68.1

DBSCAN-SWA_6

2387070 : 2426752

Listeria_phage(96.15%)

terminase,tail,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_077286891.1\|2387070_2387304_-	hypothetical protein	A8ATC5	Listeria_phage	1.3e-33	92.2
WP_003763882.1\|2387744_2387930_+	hypothetical protein	A0A059T7Z0	Listeria_phage	3.5e-18	87.9
WP_026749929.1\|2388325_2388835_-	hypothetical protein	NA	NA	NA	NA
WP_031645777.1\|2389453_2389993_-	GNAT family N-acetyltransferase	A0A0B5CYP1	Listeria_phage	1.5e-77	79.2
WP_031645776.1\|2389992_2390172_-	hypothetical protein	A0A0B5CU31	Listeria_phage	3.5e-23	96.6
WP_077286893.1\|2390410_2391262_-	M15 family metallopeptidase	A0A059T7Y8	Listeria_phage	5.6e-143	91.2
WP_014929558.1\|2391261_2391543_-\|holin	phage holin	A8ATW3	Listeria_phage	6.7e-45	98.9
WP_003733957.1\|2391542_2391848_-	hypothetical protein	A0A059T5E6	Listeria_phage	1.8e-43	100.0
WP_077286895.1\|2391898_2394064_-\|tail	phage tail protein	A8ATW1	Listeria_phage	0.0e+00	95.7
WP_069027960.1\|2394076_2395645_-\|tail	phage tail family protein	A8ATW0	Listeria_phage	2.8e-305	99.8
WP_077286897.1\|2395641_2400441_-\|tail	phage tail tape measure protein	A8ATV9	Listeria_phage	0.0e+00	88.0
WP_077286899.1\|2400445_2400757_-	hypothetical protein	A0A0B5D116	Listeria_phage	3.4e-42	97.8
WP_003733698.1\|2400753_2401185_-	hypothetical protein	A8ATV7	Listeria_phage	4.0e-73	97.9
WP_047934339.1\|2401240_2401930_-	Ig domain-containing protein	A8ATV6	Listeria_phage	8.1e-100	85.2
WP_003725064.1\|2401934_2402306_-	hypothetical protein	A8ATV5	Listeria_phage	8.5e-64	100.0
WP_003733696.1\|2402302_2402620_-	HK97 gp10 family phage protein	A8ATV4	Listeria_phage	4.6e-50	96.2
WP_003733695.1\|2402609_2402975_-	hypothetical protein	A8ATV3	Listeria_phage	9.9e-65	99.2
WP_012951937.1\|2402974_2403328_-	hypothetical protein	A8ATV2	Listeria_phage	7.6e-62	100.0
WP_173677881.1\|2403328_2403496_-	hypothetical protein	A8ATV1	Listeria_phage	1.7e-11	100.0
WP_031659979.1\|2403515_2404388_-	hypothetical protein	A8ATV0	Listeria_phage	3.6e-161	99.3
WP_031672306.1\|2404410_2404965_-	hypothetical protein	A8ATU9	Listeria_phage	1.5e-85	97.3
WP_046670972.1\|2405060_2406104_-	hypothetical protein	A0A0B5D111	Listeria_phage	2.6e-198	98.6
WP_069015704.1\|2406108_2407665_-	hypothetical protein	A8ATU7	Listeria_phage	5.0e-299	99.0
WP_077286901.1\|2407679_2408999_-\|terminase	PBSX family phage terminase large subunit	A8ATU6	Listeria_phage	2.4e-233	88.5
WP_003723792.1\|2408937_2409723_-	hypothetical protein	A0A0B5CTX0	Listeria_phage	3.0e-127	95.1
WP_003723793.1\|2409762_2409990_-	hypothetical protein	A0A0B5CTV3	Listeria_phage	6.8e-32	94.7
WP_077286903.1\|2410283_2410718_-	hypothetical protein	A8AU03	Listeria_phage	2.4e-73	95.8
WP_060567761.1\|2410857_2411241_-	DUF2481 family protein	A0A0B5CU14	Listeria_phage	1.2e-60	91.3
WP_074046942.1\|2411244_2411649_-	DUF1064 domain-containing protein	A8ASP7	Listeria_phage	4.0e-59	88.1
WP_074046943.1\|2411593_2411776_-	hypothetical protein	A8ASP6	Listeria_phage	3.4e-18	81.0
WP_077286906.1\|2411794_2412277_-	single-stranded DNA-binding protein	A8ATZ7	Listeria_phage	8.2e-75	89.4
WP_077286909.1\|2412273_2412774_-	hypothetical protein	NA	NA	NA	NA
WP_179298335.1\|2412821_2412959_-	hypothetical protein	NA	NA	NA	NA
WP_031648699.1\|2412974_2413169_-	hypothetical protein	A0A059T7V7	Listeria_phage	4.1e-25	89.1
WP_026747228.1\|2413354_2413564_-	hypothetical protein	A0A059T6C7	Listeria_phage	2.9e-13	60.6
WP_031645762.1\|2413560_2413776_-	hypothetical protein	NA	NA	NA	NA
WP_077286915.1\|2413879_2414308_-	pentapeptide repeat-containing protein	A0A060AFJ6	Listeria_phage	8.1e-42	85.9
WP_077286918.1\|2414366_2414966_-	DUF1642 domain-containing protein	Q8W5X2	Listeria_phage	8.4e-53	54.8
WP_188317551.1\|2414982_2415135_-	hypothetical protein	NA	NA	NA	NA
WP_077286921.1\|2415291_2415756_-	class I SAM-dependent methyltransferase	A8ATY8	Listeria_phage	9.9e-86	94.2
WP_077286923.1\|2415752_2416724_-	phage replisome organizer N-terminal domain-containing protein	A8ASN4	Listeria_phage	1.5e-163	92.3
WP_012951956.1\|2416740_2417400_-	ERF family protein	A8ASN3	Listeria_phage	5.3e-93	94.1
WP_003734952.1\|2417405_2417882_-	siphovirus Gp157 family protein	A8ASN2	Listeria_phage	1.3e-56	94.3
WP_003737363.1\|2417878_2418073_-	hypothetical protein	A0A059T6E8	Listeria_phage	2.7e-29	98.4
WP_003722564.1\|2418377_2418566_-	hypothetical protein	Q9T175	Listeria_phage	1.8e-22	82.3
WP_023548459.1\|2418674_2418890_-	hypothetical protein	Q9T176	Listeria_phage	9.7e-28	93.0
WP_068996337.1\|2418886_2419420_-	hypothetical protein	A0A059T5F0	Listeria_phage	2.3e-78	88.4
WP_077286926.1\|2419543_2420332_-	phage antirepressor KilAC domain-containing protein	Q9T178	Listeria_phage	2.6e-134	92.7
WP_003731223.1\|2420395_2420938_+	hypothetical protein	A8ATX9	Listeria_phage	2.8e-95	100.0
WP_077286929.1\|2420915_2421278_-	hypothetical protein	A8ATX7	Listeria_phage	2.2e-32	95.8
WP_031670099.1\|2421342_2421702_+	DUF2513 domain-containing protein	A0A2H4J4K9	uncultured_Caudovirales_phage	6.0e-06	25.4
WP_003733687.1\|2421660_2421855_-	hypothetical protein	A0A059T6E5	Listeria_phage	1.4e-25	95.3
WP_023548450.1\|2421919_2422186_+	hypothetical protein	NA	NA	NA	NA
WP_023548448.1\|2422208_2422382_-	hypothetical protein	NA	NA	NA	NA
WP_023548446.1\|2422385_2422613_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_060595921.1\|2422784_2423078_+	helix-turn-helix transcriptional regulator	A8ATX5	Listeria_phage	1.6e-25	62.9
WP_012951966.1\|2423108_2423600_+	hypothetical protein	A8ATX4	Listeria_phage	2.9e-91	99.4
WP_023548442.1\|2423622_2423841_+	zinc-ribbon domain-containing protein	A0A059T6E3	Listeria_phage	4.6e-33	97.2
WP_023548440.1\|2423855_2424461_+	hypothetical protein	NA	NA	NA	NA
WP_077286932.1\|2424524_2425883_+	recombinase family protein	Q8LTD8	Listeria_phage	1.0e-255	99.1
WP_031645473.1\|2425873_2426350_+	competence protein ComK	NA	NA	NA	NA
WP_003739618.1\|2426404_2426752_-	helix-turn-helix transcriptional regulator	A0A0A7RTK4	Clostridium_phage	9.9e-06	40.7

DBSCAN-SWA_7

2568727 : 2576571

Streptococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003722604.1\|2568727_2569699_-	DNA-binding protein WhiA	Q7AWZ3	Streptococcus_phage	5.2e-52	39.4
WP_046336559.1\|2569706_2570675_-	YvcK family protein	A1IMD5	Streptococcus_phage	1.1e-67	43.3
WP_010990001.1\|2570676_2571552_-	RNase adapter RapZ	A0A0R8VB27	Thermobifida_phage	3.2e-08	29.7
WP_026750233.1\|2571659_2573390_-	phospho-sugar mutase	A0A1X9I671	Streptococcus_phage	1.9e-174	53.5
WP_077286972.1\|2573431_2574493_-	galactose mutarotase	NA	NA	NA	NA
WP_077286975.1\|2574509_2575493_-	UDP-glucose 4-epimerase GalE	A0A2K9L1R4	Tupanvirus	3.4e-51	37.2
WP_003722610.1\|2575611_2576571_-	thioredoxin-disulfide reductase	G3MA85	Bacillus_virus	2.0e-88	53.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP019621

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection