CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP019622	Listeria monocytogenes strain 10-092876-0145 LM9 chromosome, complete genome	2 crisprs	DinG,cas3,WYL,casR,RT,DEDDh,csa3	0	0	8	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP019622_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP019622_1

503320-503904

Orphan

Consensus_repeat	Method
GATGTAAGTAATTTTGATACNAGTTCAGTAACTNATATG	CRT

7 spacers

The CRISPR arrays of NZ_CP019622_1

>merge|NZ_CP019622|1|503320-503904|CRT
GATTTGAGTGGTCTTGATACTAGTGCGGTAACTACTATGTGGGATATGTTTAACAGCTGTAGGGCACTTGAGGAACTGGATGTAAGTAATTTTGATACGAGTTCAGTAACTAATATGTCTTACATGTTTTATGATAATAGAAACCTTGAGGTGCTGGATGTAAGCAACCTTGATACCGGTTCAGTAACTAATATGTATGCCATGTTTGAAGATTGTACTAGTCTTGAAGAGCTGGATGTAAGTAATTTTGATACGAGTTCAGTAACTGATATGTATAGAGTGTTTAATGGCTGTGAAAAACTGAAGAAACTAGATGTAAGTAATTTCGATACCAGTTCCGCTACTGCAATGGTTCAAATGTTTAGAAATTGTAGCGCCCTTGAGAAGTTGGATGTAAGTAATTTTAATACGAGCTTAGTAACTGATATGCGTGCCATGTTTGCTGGTTGTACTAGTCTTGAAGCGTTAGATGTAAGTAATTTTGATACGAGTTCAGTAACTAATATGGCTGCCATGTTTTCTGATAATGAAAAACTGGAGAAGCTTGATTTAAGTACCTTTGATACCAGTTCAGTGACTAACATG

>NZ_CP019622|1|1|503320-503904|CRT
GATTTGAGTGGTCTTGATACTAGTGCGGTAACTACTATG	TGGGATATGTTTAACAGCTGTAGGGCACTTGAGGAACTG
GATGTAAGTAATTTTGATACGAGTTCAGTAACTAATATG	TCTTACATGTTTTATGATAATAGAAACCTTGAGGTGCTG
GATGTAAGCAACCTTGATACCGGTTCAGTAACTAATATG	TATGCCATGTTTGAAGATTGTACTAGTCTTGAAGAGCTG
GATGTAAGTAATTTTGATACGAGTTCAGTAACTGATATG	TATAGAGTGTTTAATGGCTGTGAAAAACTGAAGAAACTA
GATGTAAGTAATTTCGATACCAGTTCCGCTACTGCAATG	GTTCAAATGTTTAGAAATTGTAGCGCCCTTGAGAAGTTG
GATGTAAGTAATTTTAATACGAGCTTAGTAACTGATATG	CGTGCCATGTTTGCTGGTTGTACTAGTCTTGAAGCGTTA
GATGTAAGTAATTTTGATACGAGTTCAGTAACTAATATG	GCTGCCATGTTTTCTGATAATGAAAAACTGGAGAAGCTT
GATTTAAGTACCTTTGATACCAGTTCAGTGACTAACATG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019622.1\|WP_003725209.1\|513170_513650_+\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|226231
NZ_CP019622.1\|WP_003725189.1\|494082_495366_+\|cytosine-permease	unknown	unknown	gnl\|CDD\|271377
NZ_CP019622.1\|WP_003728986.1\|510126_511827_+\|oleate-hydratase	unknown	unknown	gnl\|CDD\|227060
NZ_CP019622.1\|WP_003740428.1\|492352_493948_+\|PucR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225306
NZ_CP019622.1\|WP_003727318.1\|507696_508002_+\|LPXTG-cell-wall-anchor-domain-containing-protein	unknown	unknown	gnl\|CDD\|273478
NZ_CP019622.1\|WP_003733207.1\|509456_510017_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|379534
NZ_CP019622.1\|WP_023550311.1\|498643_500182_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|368260
NZ_CP019622.1\|WP_003721271.1\|513807_514173_+\|heme-oxygenase-IsdG	unknown	unknown	gnl\|CDD\|183970
NZ_CP019622.1\|WP_003734632.1\|487068_487824_-\|DUF4866-family-protein	unknown	unknown	gnl\|CDD\|379782
NZ_CP019622.1\|WP_003731249.1\|514446_516210_+\|RNA-directed-DNA-polymerase	RT	pfam00078_RT_CAS-I:CAS-III	gnl\|CDD\|238824
NZ_CP019622.1\|WP_070755989.1\|511977_513081_+\|23S-rRNA-(adenine(2503)-C(2))-methyltransferase-RlmN	unknown	unknown	gnl\|CDD\|237717
NZ_CP019622.1\|WP_003721253.1\|507183_507669_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019622.1\|WP_023550313.1\|500445_502527_+\|BspA-family-leucine-rich-repeat-surface-protein	unknown	unknown	gnl\|CDD\|308794
NZ_CP019622.1\|WP_003725199.1\|508077_508344_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019622.1\|WP_003721242.1\|491249_492197_-\|MoxR-family-ATPase	unknown	unknown	gnl\|CDD\|223786
NZ_CP019622.1\|WP_003728093.1\|495366_496467_+\|DUF917-domain-containing-protein	unknown	unknown	gnl\|CDD\|226065
NZ_CP019622.1\|WP_003725186.1\|487940_490100_-\|transglutaminase	unknown	unknown	gnl\|CDD\|376628
NZ_CP019622.1\|WP_003728092.1\|496459_498010_+\|hydantoinase/oxoprolinase-family-protein	unknown	unknown	gnl\|CDD\|223223
NZ_CP019622.1\|WP_003721252.1\|506690_507164_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019622.1\|WP_009929138.1\|490096_491245_-\|DUF58-domain-containing-protein	unknown	unknown	gnl\|CDD\|224635

Protein	Function_ID	Function_description	E-value
NZ_CP019622.1\|WP_003725189.1\|494082_495366_+\|cytosine-permease	gnl\|CDD\|271377	cd11484, SLC-NCS1sbd_CobB-like, nucleobase-cation-symport-1 (NCS1) transporter CobB-like; solute-binding domain. This NCS1 subfamily includes Escherichia coli CodB (cytosine permease), and the Saccharomyces cerevisiae transporters: Fcy21p (Purine-cytosine permease), and vitamin B6 transporter Tpn1. NCS1s are essential components of salvage pathways for nucleobases and related metabolites; their known substrates include allantoin, uracil, thiamine, and nicotinamide riboside. NCS1s belong to a superfamily which also contains the solute carrier 5 family sodium/glucose transporters (SLC5s), and solute carrier 6 family neurotransmitter transporters (SLC6s).	2.40318e-96
NZ_CP019622.1\|WP_003728986.1\|510126_511827_+\|oleate-hydratase	gnl\|CDD\|227060	COG4716, COG4716, Myosin-crossreactive antigen [Function unknown].	0
NZ_CP019622.1\|WP_003740428.1\|492352_493948_+\|PucR-family-transcriptional-regulator	gnl\|CDD\|225306	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism].	2.42853e-59
NZ_CP019622.1\|WP_003727318.1\|507696_508002_+\|LPXTG-cell-wall-anchor-domain-containing-protein	gnl\|CDD\|273478	TIGR01167, Zinc_metalloprotease_ZmpB, LPXTG-motif cell wall anchor domain. This model describes the LPXTG motif-containing region found at the C-terminus of many surface proteins of Streptococcus and Streptomyces species. Cleavage between the Thr and Gly by sortase or a related enzyme leads to covalent anchoring at the new C-terminal Thr to the cell wall. Hits that do not lie at the C-terminus or are not found in Gram-positive bacteria are probably false-positive. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region. [Cell envelope, Other].	4.34504e-05
NZ_CP019622.1\|WP_003733207.1\|509456_510017_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|379534	pfam14278, TetR_C_8, Transcriptional regulator C-terminal region. This domain is a tetracycline repressor, domain 2, or C-terminus.	2.23521e-25
NZ_CP019622.1\|WP_023550311.1\|498643_500182_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|368260	pfam05043, Mga, Mga helix-turn-helix domain. M regulator protein trans-acting positive regulator (Mga) is a DNA-binding protein that activates the expression of several important virulence genes in group A streptococcus in response to changing environmental conditions. This domain is found in the centre of the Mga proteins. This family also contains a number of bacterial RofA transcriptional regulators that seem to be largely restricted to streptococci. These proteins have been shown to regulate the expression of important bacterial adhesins. This is presumably a DNA-binding domain.	1.01429e-19
NZ_CP019622.1\|WP_003721271.1\|513807_514173_+\|heme-oxygenase-IsdG	gnl\|CDD\|183970	PRK13316, PRK13316, heme oxygenase IsdG.	3.55164e-70
NZ_CP019622.1\|WP_003734632.1\|487068_487824_-\|DUF4866-family-protein	gnl\|CDD\|379782	pfam16160, DUF4866, Domain of unknown function (DUF4866). This family consists of uncharacterized proteins around 250 residues in length and is mainly found in various human gut Firmicute species and abundant in human gut metagenomic datasets. The function of this family is unknown.	2.71521e-121
NZ_CP019622.1\|WP_003731249.1\|514446_516210_+\|RNA-directed-DNA-polymerase	gnl\|CDD\|238824	cd01646, RT_Bac_retron_I, RT_Bac_retron_I: Reverse transcriptases (RTs) in bacterial retrotransposons or retrons. The polymerase reaction of this enzyme leads to the production of a unique RNA-DNA complex called msDNA (multicopy single-stranded (ss)DNA) in which a small ssDNA branches out from a small ssRNA molecule via a 2'-5'phosphodiester linkage. Bacterial retron RTs produce cDNA corresponding to only a small portion of the retron genome.	1.43128e-28
NZ_CP019622.1\|WP_070755989.1\|511977_513081_+\|23S-rRNA-(adenine(2503)-C(2))-methyltransferase-RlmN	gnl\|CDD\|237717	PRK14455, PRK14455, ribosomal RNA large subunit methyltransferase N; Provisional.	0
NZ_CP019622.1\|WP_023550313.1\|500445_502527_+\|BspA-family-leucine-rich-repeat-surface-protein	gnl\|CDD\|308794	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285. This region appears distantly related to leucine rich repeats.	3.76219e-29
NZ_CP019622.1\|WP_003721242.1\|491249_492197_-\|MoxR-family-ATPase	gnl\|CDD\|223786	COG0714, COG0714, MoxR-like ATPases [General function prediction only].	7.47241e-102
NZ_CP019622.1\|WP_003728093.1\|495366_496467_+\|DUF917-domain-containing-protein	gnl\|CDD\|226065	COG3535, COG3535, Uncharacterized conserved protein [Function unknown].	0
NZ_CP019622.1\|WP_003725186.1\|487940_490100_-\|transglutaminase	gnl\|CDD\|376628	pfam01841, Transglut_core, Transglutaminase-like superfamily. This family includes animal transglutaminases and other bacterial proteins of unknown function. Sequence conservation in this superfamily primarily involves three motifs that centre around conserved cysteine, histidine, and aspartate residues that form the catalytic triad in the structurally characterized transglutaminase, the human blood clotting factor XIIIa'. On the basis of the experimentally demonstrated activity of the Methanobacterium phage pseudomurein endoisopeptidase, it is proposed that many, if not all, microbial homologs of the transglutaminases are proteases and that the eukaryotic transglutaminases have evolved from an ancestral protease.	4.40206e-28
NZ_CP019622.1\|WP_003728092.1\|496459_498010_+\|hydantoinase/oxoprolinase-family-protein	gnl\|CDD\|223223	COG0145, HyuA, N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism].	1.15698e-106
NZ_CP019622.1\|WP_003725209.1\|513170_513650_+\|AraC-family-transcriptional-regulator	gnl\|CDD\|226231	COG3708, COG3708, Uncharacterized protein conserved in bacteria [Function unknown].	1.03205e-42
NZ_CP019622.1\|WP_009929138.1\|490096_491245_-\|DUF58-domain-containing-protein	gnl\|CDD\|224635	COG1721, COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only].	1.37557e-52

>NZ_CP019622.1|WP_023550313.1|500445_502527_+|BspA-family-leucine-rich-repeat-surface-protein
MKKFSMRVVLIISVLFIALGNANVSIAQERDTTNKLPEEELGSLDTSNLIAEEVAQEKPAEVENLEEIPTTDELMQNPEVREQPVADSDDPDLTAVSSGDYWTIYYNSANDEYSLRMFGNVPSSKPSAWNSYLKYIKHIEIEEATLTGDFSSYFRSNVFTVLESVRIERSNLSGVTSFARAFEGDSESESPLEKVIIRDNYYQETPSLTNISRMFTLCRKLSELDVSGLNTSSVTKMDTIFSNANSLKELDVSHFDTSSVTDMSSMFAACNSLEELDVSNFDTSSVTNMKYMLSGLHLKKLDVSNFDTSSVTNMYGMFAYCYNLEELDVSNFDTSSVNNMLHMFYVCNNLEELDLSNFDTSSVTNMFAMFAYCTSLKEIDVSNFDTSSVTTMSAMFFECSSLEALDLSNFDTSSVTTMASMFENSTALKSLYLDNFTDAASMTDMFKGTTSLTYLFVSHNLSTFNRLENTSWYDEKNWVQFSNLSQLQTYHRKQSEPTGYRKGAFLSLTMDAMGGEFEDAEEQKVQNKVSGEYWEEIVPVKEDYYFDGWYLDQNFTNKFDFSLPAAVSTTIYAKWVENYTVIIPASISLNEATELKVEGINRGSKALSVGLNRLATSVSESNELTLANTADTTVQCSAPLSWDGSENNPEKAILTLAPGSEITEGDAVMAIEAPENIQAGKYTGNLVFSINYE
>NZ_CP019622.1|WP_023550311.1|498643_500182_+|helix-turn-helix-domain-containing-protein
MREYLDSKSQKKVALLEKIFYAENHTSTQEELLNDLNITYPTLISTIKTINFDIERFGYKAFSIVHSAPNLSYTLKISDNCSIQLIINAYIRESPKFQILETLLLASFPNLQALAKKVHVSYSGIKKEIKELNEELRERNLSISTGNQVEITGDEFSLRIFYAFLFLVAYSGDRWPFSFVQYDEITDILESCPKEIYRANSIDKAMMIHYYVAMHLLRDRMNCQIDTTRQFKVALYKACTEESKKSESAFIKKVAKQLPNRNYKEMTYTTQIILSTIVAFGSYSSIEKMPSFFYMDEQLEEMGFMKLVDFASEQVNDNLSIPFSEKEMELLRYSFASINYRYFLLDNLINKFNNIVPGYTNLDRNIRKIHKVNHLEPLISQLVNLKEMDPLKPFEERLASDYLIILDKRIDFSIHTLPIKVTILSTISNETAVFDFMRYFSSYYNLEIINQVDPVVDLYISDFSVSPEVLTSLRINQPIIYVNTRWLESDYVKINDNLAKIARKKFIANKKN
>NZ_CP019622.1|WP_003728092.1|496459_498010_+|hydantoinase/oxoprolinase-family-protein
MYKIGIDVGGTNTDAVILDENQQLIHSVKMPTSEDIETGITESLHRVLSETGIDRSKVTHAMLGTTQCTNAIVERKKLAKVGVLRLGYPATASVLPYTAWPEDMVGFLSGKYKLTGGGYEYDGQVLSEINEAEIRETLASWKGEVESVAVVGVFSSLKNDQELAVQKIIEEELGADIPVSISSSVGSVGLIERENATILNAALFKVIAATSDGFEKALEQEGIAHAEIYLCQNDGTLMSLNYARQFPILTIACGPTNSIRGASYLAGLKDAMVLDVGGTTSDIGVLTDGFPRESSLAVDVGGVRTNFRMPDIISIGLGGGSIVREKDGDITIGPDSVGYRISEEALVFGGKTMTTTDIAVRLGRAEIGNPELVAHIPTDFAEKAYKKIAEMTEDAIDKMKTSSGSVSLVLVGGGSVIIPDEISGVAQIFRDKNGPVANAIGASISQISGQYEQIYIYSQIEREEALQDAEQKAREQATLAGAVTDSIEVVEVEEIPLAYHPGNATRLRVKVVGNLV
>NZ_CP019622.1|WP_003728093.1|495366_496467_+|DUF917-domain-containing-protein
MRYLDEQAIENIAIGAAFLGTGGGGDPYIGKMMALTAIKKHGPIKLLSPEEIADDDYFIPAAMMGAPSVLIEKFPKGDEFVRVFEKLGRYVGKEVKGTFPMEAGGVNSMIPIVVAAQLGLPMVDCDGMGRAFPELQMVTFHLDGISATPMAITDEKGNIGIMETIDNKWTERLARVTTVEMGASSLVSLYPCNGAQIKQSSIKNIVTLSEEIGKVIRETSMDEAEKLQKLLDVTHGYHLFEGKITDVVRETRAGFNFGRVKIDGLNKDTGSEVIVHFQNENLVAEKNGEPIAITPDLICMVDLETLMPVTTEALKYGKRVRVMALPADDAWRTDKGIETVGPRYFGYDVDFEPLEELVKKEERRHV
>NZ_CP019622.1|WP_003725189.1|494082_495366_+|cytosine-permease
MTEKKSVEQTQSWQSLAFVWTGAMICVPSLLVGGTLISGMPLWEAILIALLGYGVIVLFMIYQGMQSSDLGIPAVSVASQVFGEQGSKKIISILLAIACLGWFGIQANVCGAAFSQFLGIYGINLPVPVSSLIWGVIMLLSAIYGIRILSILNYIAVPVLLFVCIYGLVVSLNDGGLAIVENYKPAGSMSFMTGLAITIGSFALGAVIAGDYSQYTKSRKDVVKAAIVGILPSGVLMITVGAVLALTAGTADISVVFTNLGLPVLGIIGLILAAWTTNAVNAFSGGIAIINVFNISEKYHKVAVAVAGGLGTILAVIGILNHFVPIMSVLSAMVPPVAGVMIASYWIVQKGDKSKWAPVPGVNWLGVSSWLVGAVIAGIPVILTFFPELPQLPNQPLIGIILSLAVYLIGAKVLSGKTNNVENLEGK
>NZ_CP019622.1|WP_003740428.1|492352_493948_+|PucR-family-transcriptional-regulator
MSVKLADLMKLPSLKEAKVVSGKSGLSKLVSSISVLEYTEVALLEDDLFDNDEFYGSEIVVSAFVNIRDDVEAQCRTIERLHKVGEVALILYYVGIFVPKMDQKLIDFANELDFTIIVMPENEMSLRYSEVIYEVVEAIVKQEMTDTNFVTESLEQISSVRPPQRNIDTTLKILSDRTHTSLVLTDNSFQVINSITWPRTRHWDFERIIEASKQIGEHELVQLTLDERDFYTARKPIFQDGMQAMHLFMMKEKGVLTADVVMQITEVVQVFMNLWGRNYVEISTAELMKAILNDESVKMRRLGKILNVDVSSIKWMWLVKTEEIRDNEQVLAELKSFVASHFQVSLIDLFEDNIVVLLDNSVAQRDRTHTANEFAMMMKEHGIDLKITVCQGMEQTSDVQSAYSLVNEYKNAANAIYANKSIYSLQEIDFAAKCVEIVDRGELAIAEQMRPLKPLEDNDELIETLSVFLLEGESNYNQAAELLFLHKNTIKYRIQRINELLQYPATKIPESYNLYLAVAIRRILGGNNNNK
>NZ_CP019622.1|WP_003721242.1|491249_492197_-|MoxR-family-ATPase
MSIEPSIKIEEIINEVEKVIVGKRHVVKLSLTALLAGGHVLLEDVPGVGKTMMVRTLSKTIGVSFKRIQFTPDLLPADVTGVSIFNPETRDFEFRPGPVMGNIVLADEINRTAPRTQAALLEGMAENSVTVDGITRKLANPFFVMATQNPIEYEGTYALPEAQLDRFLLKINIGYPTVEEEMQLLTLKQYQDPLDQTQQVVTLSELLDLKNKAKQVFIDDVLKNYIIRLVDATRKHPSVALGISPRGSLAFMQAAQAFALIEGRDYVIPDDIQYLAPYIFTHRLILKSEAYYNEETAESIIASILKNTSVPVEKR
>NZ_CP019622.1|WP_009929138.1|490096_491245_-|DUF58-domain-containing-protein
MLKKRLLLAFRWIIMLIIYAGLWTYTLFQGDTASWFLTYFFSFILLLLFLSSIYPLKAWKVNRRFVKNTYHDGDLIDMQVSFTRKSRYPVGYLLFQQKIPASFGNVSARQQVVYPLFKKHFTVTLAGFVGVRGIHSFPPVDVETSDAFGLLERSRQLSSEKSLTIYPTYFPDVLEKISEASPENERNAAYWTLKKNSNLHSLREFSSGDRISLIDWKSSAKSDQLMTREFENSATSRLSVIFYGASHPNFELSLRAAYSFIRKISEDNGEIRVTLLGDQTSKFAPAKGTSRLQDISTAFAEIAPVDSLTLQESLDSNLHSGEKILLFTPCIDTMLMQKVTRLTDNKQLQIITFQSEHSKAMDAPAIFLEPASLLSRWEREAK
>NZ_CP019622.1|WP_003725186.1|487940_490100_-|transglutaminase
MKRYLTLVMLFILSVLLISEWIYPFAELTELSTANWIILFITLSLGSFFLRLKYYWTIPLHIVMIIFVSGIYYAKGGILAGNWFVSFFQITFNGFRDMVQFRSSDISMDFILIVFLIALWLLSYITTYSILRKQRVMSVLVLTVAYLAVINTFTDYNSNWAIVRTVLEGFLLLHLALASRIAAPNRISADSLKRNGLFYHIFVILLLAVFVFSSLMLPKKAPIFPDPVPTIKNALGINTTRTVGYSEDDTTLGGALKKDNATVFTARAEKGHYWRVESKTVYTGTGWANANSADVISFSSGDNFPIQLTEQTTGATNTAEISFASSNDYMPYPYGTQTVNGAVDSFSANLTIERVGPVDTIKNYTVQLKTPVYNIEKMQNADFSTLSNAFVSQYTQTPKDLPDRVTKLANKVTKDADSIYDKTKAIERYLSASGTFTYSTEDAKETPRGADYVDQFLFETQIGYCDNFSTSMVVMLRSLGIPARWAKGYTPGEGEKKENDAKTTYTITNNNAHSWPEVFFPGTGWVPFEPTATFSNPENFQEPTTETANKPETPNDSTSTPETPNTADKTPEQDNGSSSTGETPKKEEPKTETAASNFEIPSWVWWIPAGLVVTLLALAIIFRRRIRRYLLLRSLRNSPEFGKTYHRLMKLLASYGYVRESSETLRHFSTRVDAELTTTEFSRLTKMYEAQIYSNNLTEKVITAEETQLVQQVIARLTK
>NZ_CP019622.1|WP_003734632.1|487068_487824_-|DUF4866-family-protein
MTTIFPKEQNVAPLFEQILANPTACRRFKDVFLDNLESYQETRGFEKDDTLFAKIILSAYRQSDVSALLLGVCGRTLFELLRQAFLIPKKLTVDNPFFLTDKEGNFIAKKDDISNREQEKFQEIYQSDLHHSETTIFLVDDDDIIHSYEPDFSISTKRINKKRGILVLYSLPDTLKLGMTESEVYAFIWKTFLHIQEIIPSSRIFYGQETSENADELGVFLPIHHFEKKMLQNIEQVNELVDALREQMVNK
>NZ_CP019622.1|WP_003721252.1|506690_507164_+|hypothetical-protein
MKKKRVVIISLLLLLVSVIGISSYFLFKDKINLLDVDHSAVDWNGKKQKDTSGEENTIAIPGFEKVTLYANETKQAVNFHNPEINDCYFKISLIHPDGSVLWISDLIEPGKGMYSIELEKTLAVGEYENAVLKYECFSLNDQSPLNGSEINLKLVVV
>NZ_CP019622.1|WP_003721253.1|507183_507669_+|hypothetical-protein
MNKLVLSTLSVAAMGMVFFSGGTAYAADKEGNTVVEYSVEGDYTLVVPEKVNLSNDNATEMSVKTINRNLEPGKEVEVTLSSGLSADGEIELQRVGAISDVITSSFKSNNSVVPMANPVIGSFSGYAMEETEVSKIQIGNPQGDKKAGAYQTTLTFTAAFK
>NZ_CP019622.1|WP_003727318.1|507696_508002_+|LPXTG-cell-wall-anchor-domain-containing-protein
MKRKLVLAMVLISFCGMFFLSPDRVQASQTVVEVLISEDDLDVSEENIQEIPKKELAASSDKDNKQPILPKAGDTVTNYTLLGLVLVLIWLIMQRKRKKKE
>NZ_CP019622.1|WP_003725199.1|508077_508344_+|hypothetical-protein
MARIEYGEEIQKSLLVLYSRGSTIDSICKEYGIPRYEFHKWMKLHDADKLETKEVKTFLQIRELKQQKNKLEEEILFLNEAINLLESP
>NZ_CP019622.1|WP_003733207.1|509456_510017_+|TetR/AcrR-family-transcriptional-regulator
MAESLITKKAIAGGLMELCQHKRFEKISIADITNICGLNRQTFYYHFTDKYDLLTWTYENDFFHCLADGITLGNWDKHVLKMLESIKENADFYKNTVSADASILSFCFSKLTNSLFMDLFEKIDTNGAVNEADRVFYAEFFSYGCSGVLIKWITRGFKEAPETIANQLFRLAKDTEFLANSMYREN
>NZ_CP019622.1|WP_003728986.1|510126_511827_+|oleate-hydratase
MKNKKRTLVALTGAAIGTGIAAKKISEQKAAEKERAVDEAIKARYYGDKQVYFVGGGIASLAGAVYLIRDANFDGKNIHIIEGMHILGGSNDGAGSVEHGFVCRGGRMLNEETYENFWDLFSSIPSLDMPNFSVTEEILNFDHLHPTHAQARLVDKDRNILDAHSMGFNNNDRMLMTKLLATPEEKLDNLTIRDWFDEHFFETNFWYMWQTTFAFQKWSSLFEFRRYMNRMMLEFSRIDTLEGVTRTPLNQYESLILPLKTFLDKHHVDFTINQTVEDIDFKDAPGITATALHLSDGSTIELGPDDDVIMTNACMTDSATLGDMNTPAPKPEEKPISGELWYKVAQKKPNLGNPEPFFGHEEETNWQSFTVTCHGDKLLKRIERFTGNIPGSGALMTFKDSNWLMSTVVAAQPHFKAQDANTTIFWGYGLYPDRVGDFVKKPMKECTGEEILYELMCHLNWQDDFEEIKADIINVIPCYMPYIDAQFEPRAMSDRPAVVPEGSTNFAMISQFVEIPKDMVFTEEYSVRAARIAVYTLLDIDKKICPVTPHNRDPKVLAKATQTMFR
>NZ_CP019622.1|WP_070755989.1|511977_513081_+|23S-rRNA-(adenine(2503)-C(2))-methyltransferase-RlmN
MEKSSIYGLTWTKLTEWLEAHGQKKFRATQVWDWLYRNRVKTFEEMSNVPKETIELLTANFVMNTLEEQVVQESTDGTTKYLFKLSDGNLIETVMMKQEYGLSVCVTTQVGCNIGCTFCASGLLKKSRDLTAGEIVEQIMNVQHYLDGRNLEERVSHVVVMGIGEPFDNYDNVMDFLRVINHDKGLAIGARHITVSTSGLAPRIIDFANEDFQVNLAISLHAPNNELRTSIMRINKTYSIEKLMEAIHYYVNKTNRRITFEYIMLKGVNDHKKEALELAALLGEHRHLAYVNLIPYNPVDEHIDYERSTKEDVLAFYDTLKKNGINCVIRREHGTDIDAACGQLRSKQIKRVGVRERMKQKQAAAEE
>NZ_CP019622.1|WP_003725209.1|513170_513650_+|AraC-family-transcriptional-regulator
MEVEIVERNAFTAVGKKRTFSVENDAQKEKISQFWQEANTNGDAERINELAEFATIDGILGVCKMNGDKMDYYIAIESELTPPADMEKLIIPASKWAIFKSVGPLPSAIQKVWEYIYGEWFQTSNYAHGNAPELEVYTEGDTTAADYYSEVWIPVVEKE
>NZ_CP019622.1|WP_003721271.1|513807_514173_+|heme-oxygenase-IsdG
MIIVTNTIKVEKGAAEHVIRQFTGANGDGHPTKDIAEVEGFLGFELWHSKPEDKDYEEVVVTSKWESEEAQRNWVKSDSFKKAHGRTKDTREQREDRKGIVGNAIARFEVVHVQNPVIVEK
>NZ_CP019622.1|WP_003731249.1|514446_516210_+|RNA-directed-DNA-polymerase
MRKKVDVLSMDNEKAREFFMKPSSYFSQNLPKYFNLGYLLESAESKLGKKQLKKEMYFENKVYSNFPNVNFLIQTNKTISTYRPITLLHPYIYVDYVNFLTEIKIWEELKERFQNLQEEVKEKIICSSLPFDIETSKEDDSKKEMALNFWKSIEQETIKYSLGYNYLLKLDISNFYGSIYTHTLCWAFHGENYSKEAKNSKNLQNLTGDKCDRKFQWMNYGETVGIPQGNVISDLMSELLLAYIDSELVKKIDDEIDYKIIRYRDDYRIFTKRLEDSTLVKRELVVLLQRFKLNLGESKTSQTTDIISGSLKEDKMYWIEHDPVTKLTSDKFYRSPKILMKKSLEEHKNKKYKTRVFNEFFKKHFHNRTYQATLQKHLLIIKVFSDLYPNSGQLIAALHEFEGRLLDLNYKDFRNIGTEVEVLIAILVDIIKKNPKITEIGVKLLSTLLKKINFEEFEMKYLESNNSNEVQSDFEVKLAYINSVNHKLSNSNYNDYLEIWMQRLVVKNLKESTTLSDLYIEQSKNELVKFCNSIIRGKEMIQIFNEDWLKDEHKIELSKFINLNEIDKLTDIISDDEIYLAEYNQMT

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Crispr_ID: NZ_CP019622_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP019622_2

505540-505797

Orphan

Consensus_repeat	Method
GATACCAGTTCCGTTACTAATATG	CRISPRCasFinder

3 spacers

The CRISPR arrays of NZ_CP019622_2

>merge|NZ_CP019622|2|505540-505797|CRISPRCasFinder
GATACGAGTGCTATAACTAATATATATGGCATGTTTCAATTTTGCTCTGGTCTTGAAGAGTTAGATTTAAGTCATTTTGATACCAGTTCCGTTACTAATATGTATTCCATGTTTTCGGGTTGTGGATCACTGGAGATTTTGGATGTAAGCAATTGGGATACGAGTTCCGTTACTAATATGAATAGAATGTTTCAAAATTGTACTAGTCTTGAAGAGCTAGATTTAAGTACCTTTGATACCAGTTCAATGACTGACATG

>NZ_CP019622|2|1|505540-505797|CRISPRCasFinder
GATACGAGTGCTATAACTAATATA	TATGGCATGTTTCAATTTTGCTCTGGTCTTGAAGAGTTAGATTTAAGTCATTTT
GATACCAGTTCCGTTACTAATATG	TATTCCATGTTTTCGGGTTGTGGATCACTGGAGATTTTGGATGTAAGCAATTGG
GATACGAGTTCCGTTACTAATATG	AATAGAATGTTTCAAAATTGTACTAGTCTTGAAGAGCTAGATTTAAGTACCTTT
GATACCAGTTCAATGACTGACATG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019622.1\|WP_003725209.1\|513170_513650_+\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|226231
NZ_CP019622.1\|WP_003725189.1\|494082_495366_+\|cytosine-permease	unknown	unknown	gnl\|CDD\|271377
NZ_CP019622.1\|WP_023550315.1\|502662_504732_+\|BspA-family-leucine-rich-repeat-surface-protein	unknown	unknown	gnl\|CDD\|308794
NZ_CP019622.1\|WP_003740428.1\|492352_493948_+\|PucR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225306
NZ_CP019622.1\|WP_003727318.1\|507696_508002_+\|LPXTG-cell-wall-anchor-domain-containing-protein	unknown	unknown	gnl\|CDD\|273478
NZ_CP019622.1\|WP_003733207.1\|509456_510017_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|379534
NZ_CP019622.1\|WP_023550311.1\|498643_500182_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|368260
NZ_CP019622.1\|WP_003728986.1\|510126_511827_+\|oleate-hydratase	unknown	unknown	gnl\|CDD\|227060
NZ_CP019622.1\|WP_003721271.1\|513807_514173_+\|heme-oxygenase-IsdG	unknown	unknown	gnl\|CDD\|183970
NZ_CP019622.1\|WP_003731249.1\|514446_516210_+\|RNA-directed-DNA-polymerase	RT	pfam00078_RT_CAS-I:CAS-III	gnl\|CDD\|238824
NZ_CP019622.1\|WP_070755989.1\|511977_513081_+\|23S-rRNA-(adenine(2503)-C(2))-methyltransferase-RlmN	unknown	unknown	gnl\|CDD\|237717
NZ_CP019622.1\|WP_003721253.1\|507183_507669_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019622.1\|WP_023550313.1\|500445_502527_+\|BspA-family-leucine-rich-repeat-surface-protein	unknown	unknown	gnl\|CDD\|308794
NZ_CP019622.1\|WP_003725199.1\|508077_508344_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019622.1\|WP_003721242.1\|491249_492197_-\|MoxR-family-ATPase	unknown	unknown	gnl\|CDD\|223786
NZ_CP019622.1\|WP_003728093.1\|495366_496467_+\|DUF917-domain-containing-protein	unknown	unknown	gnl\|CDD\|226065
NZ_CP019622.1\|WP_003725186.1\|487940_490100_-\|transglutaminase	unknown	unknown	gnl\|CDD\|376628
NZ_CP019622.1\|WP_003728092.1\|496459_498010_+\|hydantoinase/oxoprolinase-family-protein	unknown	unknown	gnl\|CDD\|223223
NZ_CP019622.1\|WP_003721252.1\|506690_507164_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019622.1\|WP_009929138.1\|490096_491245_-\|DUF58-domain-containing-protein	unknown	unknown	gnl\|CDD\|224635

Protein	Function_ID	Function_description	E-value
NZ_CP019622.1\|WP_003725189.1\|494082_495366_+\|cytosine-permease	gnl\|CDD\|271377	cd11484, SLC-NCS1sbd_CobB-like, nucleobase-cation-symport-1 (NCS1) transporter CobB-like; solute-binding domain. This NCS1 subfamily includes Escherichia coli CodB (cytosine permease), and the Saccharomyces cerevisiae transporters: Fcy21p (Purine-cytosine permease), and vitamin B6 transporter Tpn1. NCS1s are essential components of salvage pathways for nucleobases and related metabolites; their known substrates include allantoin, uracil, thiamine, and nicotinamide riboside. NCS1s belong to a superfamily which also contains the solute carrier 5 family sodium/glucose transporters (SLC5s), and solute carrier 6 family neurotransmitter transporters (SLC6s).	2.40318e-96
NZ_CP019622.1\|WP_023550315.1\|502662_504732_+\|BspA-family-leucine-rich-repeat-surface-protein	gnl\|CDD\|308794	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285. This region appears distantly related to leucine rich repeats.	8.34812e-31
NZ_CP019622.1\|WP_003740428.1\|492352_493948_+\|PucR-family-transcriptional-regulator	gnl\|CDD\|225306	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism].	2.42853e-59
NZ_CP019622.1\|WP_003727318.1\|507696_508002_+\|LPXTG-cell-wall-anchor-domain-containing-protein	gnl\|CDD\|273478	TIGR01167, Zinc_metalloprotease_ZmpB, LPXTG-motif cell wall anchor domain. This model describes the LPXTG motif-containing region found at the C-terminus of many surface proteins of Streptococcus and Streptomyces species. Cleavage between the Thr and Gly by sortase or a related enzyme leads to covalent anchoring at the new C-terminal Thr to the cell wall. Hits that do not lie at the C-terminus or are not found in Gram-positive bacteria are probably false-positive. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region. [Cell envelope, Other].	4.34504e-05
NZ_CP019622.1\|WP_003733207.1\|509456_510017_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|379534	pfam14278, TetR_C_8, Transcriptional regulator C-terminal region. This domain is a tetracycline repressor, domain 2, or C-terminus.	2.23521e-25
NZ_CP019622.1\|WP_023550311.1\|498643_500182_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|368260	pfam05043, Mga, Mga helix-turn-helix domain. M regulator protein trans-acting positive regulator (Mga) is a DNA-binding protein that activates the expression of several important virulence genes in group A streptococcus in response to changing environmental conditions. This domain is found in the centre of the Mga proteins. This family also contains a number of bacterial RofA transcriptional regulators that seem to be largely restricted to streptococci. These proteins have been shown to regulate the expression of important bacterial adhesins. This is presumably a DNA-binding domain.	1.01429e-19
NZ_CP019622.1\|WP_003728986.1\|510126_511827_+\|oleate-hydratase	gnl\|CDD\|227060	COG4716, COG4716, Myosin-crossreactive antigen [Function unknown].	0
NZ_CP019622.1\|WP_003721271.1\|513807_514173_+\|heme-oxygenase-IsdG	gnl\|CDD\|183970	PRK13316, PRK13316, heme oxygenase IsdG.	3.55164e-70
NZ_CP019622.1\|WP_003731249.1\|514446_516210_+\|RNA-directed-DNA-polymerase	gnl\|CDD\|238824	cd01646, RT_Bac_retron_I, RT_Bac_retron_I: Reverse transcriptases (RTs) in bacterial retrotransposons or retrons. The polymerase reaction of this enzyme leads to the production of a unique RNA-DNA complex called msDNA (multicopy single-stranded (ss)DNA) in which a small ssDNA branches out from a small ssRNA molecule via a 2'-5'phosphodiester linkage. Bacterial retron RTs produce cDNA corresponding to only a small portion of the retron genome.	1.43128e-28
NZ_CP019622.1\|WP_070755989.1\|511977_513081_+\|23S-rRNA-(adenine(2503)-C(2))-methyltransferase-RlmN	gnl\|CDD\|237717	PRK14455, PRK14455, ribosomal RNA large subunit methyltransferase N; Provisional.	0
NZ_CP019622.1\|WP_023550313.1\|500445_502527_+\|BspA-family-leucine-rich-repeat-surface-protein	gnl\|CDD\|308794	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285. This region appears distantly related to leucine rich repeats.	3.76219e-29
NZ_CP019622.1\|WP_003721242.1\|491249_492197_-\|MoxR-family-ATPase	gnl\|CDD\|223786	COG0714, COG0714, MoxR-like ATPases [General function prediction only].	7.47241e-102
NZ_CP019622.1\|WP_003728093.1\|495366_496467_+\|DUF917-domain-containing-protein	gnl\|CDD\|226065	COG3535, COG3535, Uncharacterized conserved protein [Function unknown].	0
NZ_CP019622.1\|WP_003725186.1\|487940_490100_-\|transglutaminase	gnl\|CDD\|376628	pfam01841, Transglut_core, Transglutaminase-like superfamily. This family includes animal transglutaminases and other bacterial proteins of unknown function. Sequence conservation in this superfamily primarily involves three motifs that centre around conserved cysteine, histidine, and aspartate residues that form the catalytic triad in the structurally characterized transglutaminase, the human blood clotting factor XIIIa'. On the basis of the experimentally demonstrated activity of the Methanobacterium phage pseudomurein endoisopeptidase, it is proposed that many, if not all, microbial homologs of the transglutaminases are proteases and that the eukaryotic transglutaminases have evolved from an ancestral protease.	4.40206e-28
NZ_CP019622.1\|WP_003728092.1\|496459_498010_+\|hydantoinase/oxoprolinase-family-protein	gnl\|CDD\|223223	COG0145, HyuA, N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism].	1.15698e-106
NZ_CP019622.1\|WP_003725209.1\|513170_513650_+\|AraC-family-transcriptional-regulator	gnl\|CDD\|226231	COG3708, COG3708, Uncharacterized protein conserved in bacteria [Function unknown].	1.03205e-42
NZ_CP019622.1\|WP_009929138.1\|490096_491245_-\|DUF58-domain-containing-protein	gnl\|CDD\|224635	COG1721, COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only].	1.37557e-52

>NZ_CP019622.1|WP_023550315.1|502662_504732_+|BspA-family-leucine-rich-repeat-surface-protein
MKKLSIRVILIVTIIFIACGSANVSIAQERDIINKLPEVELGSLYTSNLITEEVAQDKPAEVENLEQAPTTDDLVQNPDVLEQPIADSDDSDLTVVNSGDFWTIYRNTVNGEYSLHMFGNVPSSKPTAWNSYLNRIKHIEIEEATLTGNFSSYFRNNVFTVLESVRIERSNLSRVTSFALAFYGSGIEKVIIRDNNYPTAPSLLTTEGMFKNCSNLMEVDLSGLDTSAVTTMWDMFNSCRALEELDVSNFDTSSVTNMSYMFYDNRNLEVLDVSNLDTGSVTNMYAMFEDCTSLEELDVSNFDTSSVTDMYRVFNGCEKLKKLDVSNFDTSSATAMVQMFRNCSALEKLDVSNFNTSLVTDMRAMFAGCTSLEALDVSNFDTSSVTNMAAMFSDNEKLEKLDLSTFDTSSVTNMGTMFKNCTALKSLFLDNFTHAASSTDMFTGTTSLSYLFVSHNVSNFNGLENTNWYDEKNWLQFSNLSQLQTYHRKQSEPTGYRKGEFLSLTMDAMGGQFEDAEEQKVQSKISGEYWEEVIPVKEGHYFDGWYLDQNFTNKFDFSLPATVSATLYAKWVENYTVVIPASISLNEATELKVEGINRGSKTLSVGLNYEETTISESNKLTLSNTADTTVQCLAPLSWDGSETNPKNAILTLAPGSEITEGDAVMEIESPENIQAGTYTGNLVFSINYE
>NZ_CP019622.1|WP_023550313.1|500445_502527_+|BspA-family-leucine-rich-repeat-surface-protein
MKKFSMRVVLIISVLFIALGNANVSIAQERDTTNKLPEEELGSLDTSNLIAEEVAQEKPAEVENLEEIPTTDELMQNPEVREQPVADSDDPDLTAVSSGDYWTIYYNSANDEYSLRMFGNVPSSKPSAWNSYLKYIKHIEIEEATLTGDFSSYFRSNVFTVLESVRIERSNLSGVTSFARAFEGDSESESPLEKVIIRDNYYQETPSLTNISRMFTLCRKLSELDVSGLNTSSVTKMDTIFSNANSLKELDVSHFDTSSVTDMSSMFAACNSLEELDVSNFDTSSVTNMKYMLSGLHLKKLDVSNFDTSSVTNMYGMFAYCYNLEELDVSNFDTSSVNNMLHMFYVCNNLEELDLSNFDTSSVTNMFAMFAYCTSLKEIDVSNFDTSSVTTMSAMFFECSSLEALDLSNFDTSSVTTMASMFENSTALKSLYLDNFTDAASMTDMFKGTTSLTYLFVSHNLSTFNRLENTSWYDEKNWVQFSNLSQLQTYHRKQSEPTGYRKGAFLSLTMDAMGGEFEDAEEQKVQNKVSGEYWEEIVPVKEDYYFDGWYLDQNFTNKFDFSLPAAVSTTIYAKWVENYTVIIPASISLNEATELKVEGINRGSKALSVGLNRLATSVSESNELTLANTADTTVQCSAPLSWDGSENNPEKAILTLAPGSEITEGDAVMAIEAPENIQAGKYTGNLVFSINYE
>NZ_CP019622.1|WP_023550311.1|498643_500182_+|helix-turn-helix-domain-containing-protein
MREYLDSKSQKKVALLEKIFYAENHTSTQEELLNDLNITYPTLISTIKTINFDIERFGYKAFSIVHSAPNLSYTLKISDNCSIQLIINAYIRESPKFQILETLLLASFPNLQALAKKVHVSYSGIKKEIKELNEELRERNLSISTGNQVEITGDEFSLRIFYAFLFLVAYSGDRWPFSFVQYDEITDILESCPKEIYRANSIDKAMMIHYYVAMHLLRDRMNCQIDTTRQFKVALYKACTEESKKSESAFIKKVAKQLPNRNYKEMTYTTQIILSTIVAFGSYSSIEKMPSFFYMDEQLEEMGFMKLVDFASEQVNDNLSIPFSEKEMELLRYSFASINYRYFLLDNLINKFNNIVPGYTNLDRNIRKIHKVNHLEPLISQLVNLKEMDPLKPFEERLASDYLIILDKRIDFSIHTLPIKVTILSTISNETAVFDFMRYFSSYYNLEIINQVDPVVDLYISDFSVSPEVLTSLRINQPIIYVNTRWLESDYVKINDNLAKIARKKFIANKKN
>NZ_CP019622.1|WP_003728092.1|496459_498010_+|hydantoinase/oxoprolinase-family-protein
MYKIGIDVGGTNTDAVILDENQQLIHSVKMPTSEDIETGITESLHRVLSETGIDRSKVTHAMLGTTQCTNAIVERKKLAKVGVLRLGYPATASVLPYTAWPEDMVGFLSGKYKLTGGGYEYDGQVLSEINEAEIRETLASWKGEVESVAVVGVFSSLKNDQELAVQKIIEEELGADIPVSISSSVGSVGLIERENATILNAALFKVIAATSDGFEKALEQEGIAHAEIYLCQNDGTLMSLNYARQFPILTIACGPTNSIRGASYLAGLKDAMVLDVGGTTSDIGVLTDGFPRESSLAVDVGGVRTNFRMPDIISIGLGGGSIVREKDGDITIGPDSVGYRISEEALVFGGKTMTTTDIAVRLGRAEIGNPELVAHIPTDFAEKAYKKIAEMTEDAIDKMKTSSGSVSLVLVGGGSVIIPDEISGVAQIFRDKNGPVANAIGASISQISGQYEQIYIYSQIEREEALQDAEQKAREQATLAGAVTDSIEVVEVEEIPLAYHPGNATRLRVKVVGNLV
>NZ_CP019622.1|WP_003728093.1|495366_496467_+|DUF917-domain-containing-protein
MRYLDEQAIENIAIGAAFLGTGGGGDPYIGKMMALTAIKKHGPIKLLSPEEIADDDYFIPAAMMGAPSVLIEKFPKGDEFVRVFEKLGRYVGKEVKGTFPMEAGGVNSMIPIVVAAQLGLPMVDCDGMGRAFPELQMVTFHLDGISATPMAITDEKGNIGIMETIDNKWTERLARVTTVEMGASSLVSLYPCNGAQIKQSSIKNIVTLSEEIGKVIRETSMDEAEKLQKLLDVTHGYHLFEGKITDVVRETRAGFNFGRVKIDGLNKDTGSEVIVHFQNENLVAEKNGEPIAITPDLICMVDLETLMPVTTEALKYGKRVRVMALPADDAWRTDKGIETVGPRYFGYDVDFEPLEELVKKEERRHV
>NZ_CP019622.1|WP_003725189.1|494082_495366_+|cytosine-permease
MTEKKSVEQTQSWQSLAFVWTGAMICVPSLLVGGTLISGMPLWEAILIALLGYGVIVLFMIYQGMQSSDLGIPAVSVASQVFGEQGSKKIISILLAIACLGWFGIQANVCGAAFSQFLGIYGINLPVPVSSLIWGVIMLLSAIYGIRILSILNYIAVPVLLFVCIYGLVVSLNDGGLAIVENYKPAGSMSFMTGLAITIGSFALGAVIAGDYSQYTKSRKDVVKAAIVGILPSGVLMITVGAVLALTAGTADISVVFTNLGLPVLGIIGLILAAWTTNAVNAFSGGIAIINVFNISEKYHKVAVAVAGGLGTILAVIGILNHFVPIMSVLSAMVPPVAGVMIASYWIVQKGDKSKWAPVPGVNWLGVSSWLVGAVIAGIPVILTFFPELPQLPNQPLIGIILSLAVYLIGAKVLSGKTNNVENLEGK
>NZ_CP019622.1|WP_003740428.1|492352_493948_+|PucR-family-transcriptional-regulator
MSVKLADLMKLPSLKEAKVVSGKSGLSKLVSSISVLEYTEVALLEDDLFDNDEFYGSEIVVSAFVNIRDDVEAQCRTIERLHKVGEVALILYYVGIFVPKMDQKLIDFANELDFTIIVMPENEMSLRYSEVIYEVVEAIVKQEMTDTNFVTESLEQISSVRPPQRNIDTTLKILSDRTHTSLVLTDNSFQVINSITWPRTRHWDFERIIEASKQIGEHELVQLTLDERDFYTARKPIFQDGMQAMHLFMMKEKGVLTADVVMQITEVVQVFMNLWGRNYVEISTAELMKAILNDESVKMRRLGKILNVDVSSIKWMWLVKTEEIRDNEQVLAELKSFVASHFQVSLIDLFEDNIVVLLDNSVAQRDRTHTANEFAMMMKEHGIDLKITVCQGMEQTSDVQSAYSLVNEYKNAANAIYANKSIYSLQEIDFAAKCVEIVDRGELAIAEQMRPLKPLEDNDELIETLSVFLLEGESNYNQAAELLFLHKNTIKYRIQRINELLQYPATKIPESYNLYLAVAIRRILGGNNNNK
>NZ_CP019622.1|WP_003721242.1|491249_492197_-|MoxR-family-ATPase
MSIEPSIKIEEIINEVEKVIVGKRHVVKLSLTALLAGGHVLLEDVPGVGKTMMVRTLSKTIGVSFKRIQFTPDLLPADVTGVSIFNPETRDFEFRPGPVMGNIVLADEINRTAPRTQAALLEGMAENSVTVDGITRKLANPFFVMATQNPIEYEGTYALPEAQLDRFLLKINIGYPTVEEEMQLLTLKQYQDPLDQTQQVVTLSELLDLKNKAKQVFIDDVLKNYIIRLVDATRKHPSVALGISPRGSLAFMQAAQAFALIEGRDYVIPDDIQYLAPYIFTHRLILKSEAYYNEETAESIIASILKNTSVPVEKR
>NZ_CP019622.1|WP_009929138.1|490096_491245_-|DUF58-domain-containing-protein
MLKKRLLLAFRWIIMLIIYAGLWTYTLFQGDTASWFLTYFFSFILLLLFLSSIYPLKAWKVNRRFVKNTYHDGDLIDMQVSFTRKSRYPVGYLLFQQKIPASFGNVSARQQVVYPLFKKHFTVTLAGFVGVRGIHSFPPVDVETSDAFGLLERSRQLSSEKSLTIYPTYFPDVLEKISEASPENERNAAYWTLKKNSNLHSLREFSSGDRISLIDWKSSAKSDQLMTREFENSATSRLSVIFYGASHPNFELSLRAAYSFIRKISEDNGEIRVTLLGDQTSKFAPAKGTSRLQDISTAFAEIAPVDSLTLQESLDSNLHSGEKILLFTPCIDTMLMQKVTRLTDNKQLQIITFQSEHSKAMDAPAIFLEPASLLSRWEREAK
>NZ_CP019622.1|WP_003725186.1|487940_490100_-|transglutaminase
MKRYLTLVMLFILSVLLISEWIYPFAELTELSTANWIILFITLSLGSFFLRLKYYWTIPLHIVMIIFVSGIYYAKGGILAGNWFVSFFQITFNGFRDMVQFRSSDISMDFILIVFLIALWLLSYITTYSILRKQRVMSVLVLTVAYLAVINTFTDYNSNWAIVRTVLEGFLLLHLALASRIAAPNRISADSLKRNGLFYHIFVILLLAVFVFSSLMLPKKAPIFPDPVPTIKNALGINTTRTVGYSEDDTTLGGALKKDNATVFTARAEKGHYWRVESKTVYTGTGWANANSADVISFSSGDNFPIQLTEQTTGATNTAEISFASSNDYMPYPYGTQTVNGAVDSFSANLTIERVGPVDTIKNYTVQLKTPVYNIEKMQNADFSTLSNAFVSQYTQTPKDLPDRVTKLANKVTKDADSIYDKTKAIERYLSASGTFTYSTEDAKETPRGADYVDQFLFETQIGYCDNFSTSMVVMLRSLGIPARWAKGYTPGEGEKKENDAKTTYTITNNNAHSWPEVFFPGTGWVPFEPTATFSNPENFQEPTTETANKPETPNDSTSTPETPNTADKTPEQDNGSSSTGETPKKEEPKTETAASNFEIPSWVWWIPAGLVVTLLALAIIFRRRIRRYLLLRSLRNSPEFGKTYHRLMKLLASYGYVRESSETLRHFSTRVDAELTTTEFSRLTKMYEAQIYSNNLTEKVITAEETQLVQQVIARLTK
>NZ_CP019622.1|WP_003721252.1|506690_507164_+|hypothetical-protein
MKKKRVVIISLLLLLVSVIGISSYFLFKDKINLLDVDHSAVDWNGKKQKDTSGEENTIAIPGFEKVTLYANETKQAVNFHNPEINDCYFKISLIHPDGSVLWISDLIEPGKGMYSIELEKTLAVGEYENAVLKYECFSLNDQSPLNGSEINLKLVVV
>NZ_CP019622.1|WP_003721253.1|507183_507669_+|hypothetical-protein
MNKLVLSTLSVAAMGMVFFSGGTAYAADKEGNTVVEYSVEGDYTLVVPEKVNLSNDNATEMSVKTINRNLEPGKEVEVTLSSGLSADGEIELQRVGAISDVITSSFKSNNSVVPMANPVIGSFSGYAMEETEVSKIQIGNPQGDKKAGAYQTTLTFTAAFK
>NZ_CP019622.1|WP_003727318.1|507696_508002_+|LPXTG-cell-wall-anchor-domain-containing-protein
MKRKLVLAMVLISFCGMFFLSPDRVQASQTVVEVLISEDDLDVSEENIQEIPKKELAASSDKDNKQPILPKAGDTVTNYTLLGLVLVLIWLIMQRKRKKKE
>NZ_CP019622.1|WP_003725199.1|508077_508344_+|hypothetical-protein
MARIEYGEEIQKSLLVLYSRGSTIDSICKEYGIPRYEFHKWMKLHDADKLETKEVKTFLQIRELKQQKNKLEEEILFLNEAINLLESP
>NZ_CP019622.1|WP_003733207.1|509456_510017_+|TetR/AcrR-family-transcriptional-regulator
MAESLITKKAIAGGLMELCQHKRFEKISIADITNICGLNRQTFYYHFTDKYDLLTWTYENDFFHCLADGITLGNWDKHVLKMLESIKENADFYKNTVSADASILSFCFSKLTNSLFMDLFEKIDTNGAVNEADRVFYAEFFSYGCSGVLIKWITRGFKEAPETIANQLFRLAKDTEFLANSMYREN
>NZ_CP019622.1|WP_003728986.1|510126_511827_+|oleate-hydratase
MKNKKRTLVALTGAAIGTGIAAKKISEQKAAEKERAVDEAIKARYYGDKQVYFVGGGIASLAGAVYLIRDANFDGKNIHIIEGMHILGGSNDGAGSVEHGFVCRGGRMLNEETYENFWDLFSSIPSLDMPNFSVTEEILNFDHLHPTHAQARLVDKDRNILDAHSMGFNNNDRMLMTKLLATPEEKLDNLTIRDWFDEHFFETNFWYMWQTTFAFQKWSSLFEFRRYMNRMMLEFSRIDTLEGVTRTPLNQYESLILPLKTFLDKHHVDFTINQTVEDIDFKDAPGITATALHLSDGSTIELGPDDDVIMTNACMTDSATLGDMNTPAPKPEEKPISGELWYKVAQKKPNLGNPEPFFGHEEETNWQSFTVTCHGDKLLKRIERFTGNIPGSGALMTFKDSNWLMSTVVAAQPHFKAQDANTTIFWGYGLYPDRVGDFVKKPMKECTGEEILYELMCHLNWQDDFEEIKADIINVIPCYMPYIDAQFEPRAMSDRPAVVPEGSTNFAMISQFVEIPKDMVFTEEYSVRAARIAVYTLLDIDKKICPVTPHNRDPKVLAKATQTMFR
>NZ_CP019622.1|WP_070755989.1|511977_513081_+|23S-rRNA-(adenine(2503)-C(2))-methyltransferase-RlmN
MEKSSIYGLTWTKLTEWLEAHGQKKFRATQVWDWLYRNRVKTFEEMSNVPKETIELLTANFVMNTLEEQVVQESTDGTTKYLFKLSDGNLIETVMMKQEYGLSVCVTTQVGCNIGCTFCASGLLKKSRDLTAGEIVEQIMNVQHYLDGRNLEERVSHVVVMGIGEPFDNYDNVMDFLRVINHDKGLAIGARHITVSTSGLAPRIIDFANEDFQVNLAISLHAPNNELRTSIMRINKTYSIEKLMEAIHYYVNKTNRRITFEYIMLKGVNDHKKEALELAALLGEHRHLAYVNLIPYNPVDEHIDYERSTKEDVLAFYDTLKKNGINCVIRREHGTDIDAACGQLRSKQIKRVGVRERMKQKQAAAEE
>NZ_CP019622.1|WP_003725209.1|513170_513650_+|AraC-family-transcriptional-regulator
MEVEIVERNAFTAVGKKRTFSVENDAQKEKISQFWQEANTNGDAERINELAEFATIDGILGVCKMNGDKMDYYIAIESELTPPADMEKLIIPASKWAIFKSVGPLPSAIQKVWEYIYGEWFQTSNYAHGNAPELEVYTEGDTTAADYYSEVWIPVVEKE
>NZ_CP019622.1|WP_003721271.1|513807_514173_+|heme-oxygenase-IsdG
MIIVTNTIKVEKGAAEHVIRQFTGANGDGHPTKDIAEVEGFLGFELWHSKPEDKDYEEVVVTSKWESEEAQRNWVKSDSFKKAHGRTKDTREQREDRKGIVGNAIARFEVVHVQNPVIVEK
>NZ_CP019622.1|WP_003731249.1|514446_516210_+|RNA-directed-DNA-polymerase
MRKKVDVLSMDNEKAREFFMKPSSYFSQNLPKYFNLGYLLESAESKLGKKQLKKEMYFENKVYSNFPNVNFLIQTNKTISTYRPITLLHPYIYVDYVNFLTEIKIWEELKERFQNLQEEVKEKIICSSLPFDIETSKEDDSKKEMALNFWKSIEQETIKYSLGYNYLLKLDISNFYGSIYTHTLCWAFHGENYSKEAKNSKNLQNLTGDKCDRKFQWMNYGETVGIPQGNVISDLMSELLLAYIDSELVKKIDDEIDYKIIRYRDDYRIFTKRLEDSTLVKRELVVLLQRFKLNLGESKTSQTTDIISGSLKEDKMYWIEHDPVTKLTSDKFYRSPKILMKKSLEEHKNKKYKTRVFNEFFKKHFHNRTYQATLQKHLLIIKVFSDLYPNSGQLIAALHEFEGRLLDLNYKDFRNIGTEVEVLIAILVDIIKKNPKITEIGVKLLSTLLKKINFEEFEMKYLESNNSNEVQSDFEVKLAYINSVNHKLSNSNYNDYLEIWMQRLVVKNLKESTTLSDLYIEQSKNELVKFCNSIIRGKEMIQIFNEDWLKDEHKIELSKFINLNEIDKLTDIISDDEIYLAEYNQMT

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

121081 : 127608

Listeria_phage(33.33%)

tail

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003728215.1\|121081_121534_-	ImmA/IrrE family metallo-endopeptidase	A0A059T7S0	Listeria_phage	4.0e-31	47.9
WP_003721740.1\|121539_121875_-	helix-turn-helix transcriptional regulator	A0A2H4JAR9	uncultured_Caudovirales_phage	4.0e-20	52.5
WP_009927883.1\|122091_122520_+	hypothetical protein	NA	NA	NA	NA
WP_003731177.1\|122531_122948_+	hypothetical protein	A8ASQ1	Listeria_phage	6.5e-20	37.9
WP_003728212.1\|123227_123617_+	DUF5072 family protein	NA	NA	NA	NA
WP_003721744.1\|123629_124142_+\|tail	phage major tail protein, TP901-1 family	A0A097PBF4	Streptococcus_pyogenes_phage	1.2e-47	62.7
WP_003721745.1\|124189_124492_+	hypothetical protein	NA	NA	NA	NA
WP_003740367.1\|124533_124938_+	hypothetical protein	NA	NA	NA	NA
WP_070756022.1\|124924_126793_+	hypothetical protein	A0A097PAU2	Streptococcus_pyogenes_phage	4.5e-20	45.8
WP_003734720.1\|126789_127608_+\|tail	phage tail family protein	A0A060AFE1	Staphylococcus_phage	7.2e-39	35.0

DBSCAN-SWA_2

1113584 : 1121007

Hokovirus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003730941.1\|1113584_1113968_+	glycerol-3-phosphate cytidylyltransferase	A0A1V0SGE7	Hokovirus	1.4e-16	40.7
WP_003727002.1\|1113989_1114973_+	glycosyltransferase family 2 protein	A0A1V0SAH6	Catovirus	2.0e-11	33.8
WP_023550414.1\|1114987_1116001_+	glycosyltransferase	A0A1V0SAH6	Catovirus	1.8e-10	31.2
WP_003721509.1\|1116209_1117700_+	nicotinate phosphoribosyltransferase	G3MA18	Bacillus_virus	9.5e-114	49.7
WP_023550416.1\|1117711_1118536_+	ammonia-dependent NAD(+) synthetase	G3MA24	Bacillus_virus	1.3e-67	52.2
WP_009929872.1\|1118548_1118857_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_009929871.1\|1118917_1119322_+	PTS lactose transporter subunit IIBC	NA	NA	NA	NA
WP_023550418.1\|1119450_1121007_+	glutamine-hydrolyzing GMP synthase	A0A1V0SH76	Hokovirus	6.0e-18	29.2

DBSCAN-SWA_3

1217119 : 1324507

119

Listeria_phage(73.91%)

tRNA,protease,holin,integrase,terminase,capsid,portal,tail

attL 1241818:1241841|attR 1286893:1286916

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_009927922.1\|1217119_1219528_+\|tRNA	phenylalanine--tRNA ligase subunit beta	NA	NA	NA	NA
WP_003721621.1\|1219688_1220390_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.0e-33	35.8
WP_003724750.1\|1223911_1224364_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_003724752.1\|1227685_1228360_+	uracil-DNA glycosylase	A0A172DS90	Canid_alphaherpesvirus	3.4e-50	47.7
WP_012681263.1\|1228397_1229324_-	ribonuclease HIII	NA	NA	NA	NA
WP_003740576.1\|1229477_1229741_+	cell division protein ZapA	NA	NA	NA	NA
WP_003726937.1\|1229740_1230283_+	CvpA family protein	NA	NA	NA	NA
WP_023550452.1\|1230374_1232087_+	DNA polymerase/3'-5' exonuclease PolX	A0A2H4UV14	Bodo_saltans_virus	1.9e-17	24.5
WP_003734676.1\|1232109_1234467_+	endonuclease MutS2	Q94M10	Lactobacillus_phage	1.0e-21	50.4
WP_003723853.1\|1234547_1234859_+	thioredoxin	A0A1X9I9P5	Staphylococcus_phage	5.4e-19	39.6
WP_003726544.1\|1234934_1236746_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA
WP_003726934.1\|1236926_1238141_+	aspartate kinase	NA	NA	NA	NA
WP_012681265.1\|1238196_1238691_-	YslB family protein	NA	NA	NA	NA
WP_003723856.1\|1238838_1239639_+	glutamate racemase	NA	NA	NA	NA
WP_003730987.1\|1239651_1240398_+	ribonuclease PH	NA	NA	NA	NA
WP_009928777.1\|1240400_1241012_+	XTP/dITP diphosphatase	Q66YC8	Euphorbia_ringspot_virus	8.7e-05	28.0
WP_003726034.1\|1241048_1241573_+	metallophosphoesterase	NA	NA	NA	NA
1241818:1241841	attL	NA	NA	NA	NA
WP_077397279.1\|1241858_1243013_-\|integrase	site-specific integrase	A0A059T688	Listeria_phage	1.9e-210	96.4
WP_039153595.1\|1243148_1243583_-	hypothetical protein	Q8W5Y2	Listeria_phage	6.5e-55	81.2
WP_039153592.1\|1243598_1244168_-	DUF4352 domain-containing protein	R4IBV3	Listeria_phage	9.8e-11	92.3
WP_025283118.1\|1244218_1244671_-	ImmA/IrrE family metallo-endopeptidase	R4IBK9	Listeria_phage	9.7e-78	89.3
WP_026747304.1\|1244691_1245015_-	helix-turn-helix transcriptional regulator	R4IDX0	Listeria_phage	4.1e-38	73.8
WP_025370566.1\|1245858_1246182_+	hypothetical protein	NA	NA	NA	NA
WP_003730994.1\|1246328_1246532_-	hypothetical protein	NA	NA	NA	NA
WP_003730995.1\|1246598_1246790_+	helix-turn-helix transcriptional regulator	A0A059T5F8	Listeria_phage	5.4e-22	87.1
WP_003730996.1\|1246811_1247054_+	hypothetical protein	A8ATD2	Listeria_phage	3.9e-41	93.8
WP_003730997.1\|1247056_1247242_+	hypothetical protein	A8ATD3	Listeria_phage	3.7e-28	98.4
WP_009929542.1\|1247476_1247629_+	hypothetical protein	A8ATD4	Listeria_phage	1.5e-19	100.0
WP_077397280.1\|1247765_1248479_+	SAM-dependent DNA methyltransferase	A8ATD5	Listeria_phage	7.0e-131	98.3
WP_023550460.1\|1248489_1249434_+\|integrase	site-specific integrase	A8ATD6	Listeria_phage	2.1e-175	97.1
WP_031643750.1\|1249446_1250127_+	hypothetical protein	A8ATD7	Listeria_phage	4.8e-121	96.9
WP_031643752.1\|1250123_1250681_+	DUF1642 domain-containing protein	A8ATD8	Listeria_phage	6.4e-55	58.2
WP_165442474.1\|1250677_1250824_+	hypothetical protein	A8ATZ0	Listeria_phage	8.6e-20	95.8
WP_014601510.1\|1250901_1251303_+	hypothetical protein	A8ATD9	Listeria_phage	2.6e-74	100.0
WP_014601509.1\|1251299_1251509_+	hypothetical protein	A8ATE0	Listeria_phage	1.7e-32	100.0
WP_003731704.1\|1251509_1251839_+	hypothetical protein	A8ATE1	Listeria_phage	1.1e-57	100.0
WP_003731705.1\|1251835_1252108_+	hypothetical protein	A8ATE2	Listeria_phage	2.0e-46	100.0
WP_014601398.1\|1252104_1252566_+	hypothetical protein	D9J0I6	Brochothrix_phage	5.5e-12	29.9
WP_003731672.1\|1252562_1252796_+	hypothetical protein	NA	NA	NA	NA
WP_003731671.1\|1252792_1253023_+	hypothetical protein	NA	NA	NA	NA
WP_003731670.1\|1253012_1253279_+	hypothetical protein	NA	NA	NA	NA
WP_009933642.1\|1253612_1253786_+	hypothetical protein	A0A059T5G3	Listeria_phage	5.2e-24	100.0
WP_031643758.1\|1253782_1254166_+	hypothetical protein	Q8W5W2	Listeria_phage	5.9e-60	90.6
WP_031643760.1\|1254167_1254647_+	siphovirus Gp157 family protein	Q8W5W1	Listeria_phage	2.1e-78	99.4
WP_077397281.1\|1254659_1255349_+	AAA family ATPase	A0A059T7T3	Listeria_phage	1.8e-128	97.4
WP_072217948.1\|1255427_1256669_+	DEAD/DEAH box helicase	A8ATF1	Listeria_phage	3.5e-210	93.4
WP_077397282.1\|1256694_1257180_+	DUF669 domain-containing protein	R4ICE5	Listeria_phage	8.5e-88	99.4
WP_077397283.1\|1257202_1259476_+	DNA primase	R4IBW2	Listeria_phage	0.0e+00	94.3
WP_014929539.1\|1259803_1260124_+	VRR-NUC domain-containing protein	Q8W5V6	Listeria_phage	1.2e-53	98.1
WP_039389924.1\|1260120_1260390_+	hypothetical protein	W0GBM0	Listeria_phage	5.3e-15	73.6
WP_077397329.1\|1260500_1261031_+	DUF3310 domain-containing protein	A0A059T7T5	Listeria_phage	9.0e-75	76.6
WP_069001231.1\|1261030_1261258_+	hypothetical protein	NA	NA	NA	NA
WP_009917712.1\|1261270_1261696_+	DUF722 domain-containing protein	A0A059T6H4	Listeria_phage	8.0e-74	100.0
WP_009917711.1\|1261793_1262537_+	DUF559 domain-containing protein	NA	NA	NA	NA
WP_009928009.1\|1262991_1263306_+	HNH endonuclease	A8ATF8	Listeria_phage	3.8e-57	99.0
WP_012951543.1\|1263354_1263711_+\|terminase	P27 family phage terminase small subunit	A0A059T7Y1	Listeria_phage	2.0e-46	98.0
WP_023550468.1\|1263707_1265351_+\|terminase	terminase large subunit	A0A059T7Q8	Listeria_phage	0.0e+00	98.0
WP_009928006.1\|1265360_1265750_-	DUF2513 domain-containing protein	A0A1Q1PVT8	Staphylococcus_phage	4.8e-17	39.8
WP_009928005.1\|1265800_1266931_+\|portal	phage portal protein	A0A059T6F0	Listeria_phage	4.6e-209	95.5
WP_009928004.1\|1266927_1267644_+\|protease	Clp protease ClpP	A0A1S5SFF8	Streptococcus_phage	5.5e-67	57.4
WP_023550470.1\|1267670_1268822_+\|capsid	phage major capsid protein	A0A059T678	Listeria_phage	6.3e-214	99.7
WP_023550473.1\|1268828_1268999_+	hypothetical protein	A0A059T7Y2	Listeria_phage	1.8e-21	98.2
WP_014930914.1\|1269008_1269308_+	hypothetical protein	A0A059T7R0	Listeria_phage	5.3e-48	100.0
WP_009929554.1\|1269291_1269657_+	hypothetical protein	A0A059T6F2	Listeria_phage	7.1e-63	98.3
WP_070771661.1\|1269653_1270055_+	hypothetical protein	A8ATA2	Listeria_phage	3.1e-67	97.7
WP_039388444.1\|1270051_1270435_+	hypothetical protein	A0A059T681	Listeria_phage	1.4e-64	95.3
WP_031659502.1\|1270455_1271043_+\|tail	phage tail protein	A8ATA4	Listeria_phage	1.9e-105	97.4
WP_009917698.1\|1271113_1271446_+	hypothetical protein	A8ATA5	Listeria_phage	1.8e-52	99.1
WP_167797583.1\|1271496_1271658_+	hypothetical protein	A8ATA6	Listeria_phage	1.9e-20	100.0
WP_077397284.1\|1271661_1276581_+\|tail	phage tail tape measure protein	A0A059T5F4	Listeria_phage	0.0e+00	89.0
WP_014929555.1\|1276573_1278223_+\|tail	phage tail family protein	A0A059T682	Listeria_phage	0.0e+00	99.6
WP_077397285.1\|1278235_1280530_+\|tail	phage tail protein	A0A059T7Y6	Listeria_phage	0.0e+00	98.7
WP_069280811.1\|1280519_1281614_+	carbohydrate-binding protein CenC	A0A059T7R4	Listeria_phage	3.0e-197	94.5
WP_012951557.1\|1281661_1281964_+	hypothetical protein	A0A059T5E6	Listeria_phage	1.7e-38	93.0
WP_012951558.1\|1281963_1282221_+\|holin	phage holin	A8ATB7	Listeria_phage	3.2e-25	69.0
WP_077397286.1\|1282220_1283066_+	M15 family metallopeptidase	A0A059T7Y8	Listeria_phage	4.9e-131	89.4
WP_012951560.1\|1283168_1284167_+	DUF3644 domain-containing protein	A0A0N9RUA4	Staphylococcus_phage	3.9e-71	44.8
WP_003731795.1\|1284623_1284857_+	hypothetical protein	R4IDW6	Listeria_phage	1.6e-28	78.9
WP_003731794.1\|1284853_1285045_+	hypothetical protein	R4IBI5	Listeria_phage	1.4e-25	90.5
WP_003726037.1\|1285771_1286245_+	hypothetical protein	NA	NA	NA	NA
WP_009928186.1\|1286350_1286713_+	hypothetical protein	NA	NA	NA	NA
WP_077397287.1\|1287381_1290858_+	MucBP domain-containing protein	NA	NA	NA	NA
1286893:1286916	attR	NA	NA	NA	NA
WP_003726042.1\|1290980_1292339_+	DUF1254 domain-containing protein	NA	NA	NA	NA
WP_003726043.1\|1292381_1292975_-	YdeI/OmpD-associated family protein	NA	NA	NA	NA
WP_003726044.1\|1293111_1293519_-	glyoxalase/bleomycin resistance/extradiol dioxygenase family protein	NA	NA	NA	NA
WP_003726045.1\|1293683_1294283_+	histidine phosphatase family protein	A0A1X9IGJ2	Lactococcus_phage	1.3e-29	41.0
WP_009928848.1\|1294314_1294575_-	hypothetical protein	NA	NA	NA	NA
WP_023550481.1\|1294698_1296111_+	ATP-dependent RNA helicase DbpA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	4.9e-51	32.0
WP_003726048.1\|1296135_1296399_+	DUF3116 family protein	NA	NA	NA	NA
WP_003727535.1\|1296566_1297043_+	8-oxo-dGTP diphosphatase	NA	NA	NA	NA
WP_003726050.1\|1297080_1297326_-	hypothetical protein	NA	NA	NA	NA
WP_003726051.1\|1297322_1298528_-	MFS transporter	NA	NA	NA	NA
WP_003726052.1\|1298732_1299392_+	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA
WP_003726053.1\|1299431_1299626_-	hypothetical protein	NA	NA	NA	NA
WP_077396856.1\|1299692_1300481_-	YitT family protein	NA	NA	NA	NA
WP_003726055.1\|1300534_1301248_+	trehalose operon repressor	NA	NA	NA	NA
WP_070756042.1\|1301278_1302925_-	alpha,alpha-phosphotrehalase	NA	NA	NA	NA
WP_003727531.1\|1302943_1304428_-	PTS system trehalose-specific EIIBC component	NA	NA	NA	NA
WP_003726723.1\|1304545_1305007_+	NUDIX hydrolase	NA	NA	NA	NA
WP_003726717.1\|1305045_1305510_-	hypothetical protein	NA	NA	NA	NA
WP_003726718.1\|1305698_1306613_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_023550483.1\|1306638_1307886_-	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	7.2e-107	51.8
WP_003726720.1\|1307869_1308700_-	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	3.6e-46	42.4
WP_003734523.1\|1308846_1309986_-\|protease	PrsW family intramembrane metalloprotease	NA	NA	NA	NA
WP_003723563.1\|1310065_1310461_-	helix-turn-helix transcriptional regulator	A9D9J6	Lactobacillus_prophage	1.3e-14	57.4
WP_003727524.1\|1310611_1310827_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_003727523.1\|1310950_1311484_+\|protease	matrixin family metalloprotease	NA	NA	NA	NA
WP_003731300.1\|1311499_1312165_+	hypothetical protein	NA	NA	NA	NA
WP_003727521.1\|1312426_1313365_+	hypothetical protein	NA	NA	NA	NA
WP_003723884.1\|1313479_1314763_+	trigger factor	NA	NA	NA	NA
WP_003723886.1\|1314947_1316207_+\|protease	ATP-dependent protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	1.4e-145	63.2
WP_003726393.1\|1316325_1316892_+	type I signal peptidase SipX	NA	NA	NA	NA
WP_003726394.1\|1316926_1317496_+	type I signal peptidase SipY	NA	NA	NA	NA
WP_003727520.1\|1317597_1318140_+	type I signal peptidase SipZ	NA	NA	NA	NA
WP_003726396.1\|1318149_1319013_+	ribosome biogenesis GTPase YlqF	NA	NA	NA	NA
WP_003727519.1\|1319009_1319795_+	ribonuclease HII	G4YAY0	Emiliania_huxleyi_virus	6.7e-26	37.6
WP_003727518.1\|1319928_1320789_+	DNA-protecting protein DprA	NA	NA	NA	NA
WP_003727517.1\|1321061_1323140_+	type I DNA topoisomerase	A0A1V0SB35	Catovirus	5.4e-107	37.5
WP_003726401.1\|1323202_1324507_+\|tRNA	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	NA	NA	NA	NA

DBSCAN-SWA_4

1722760 : 1768976

Listeria_phage(97.01%)

plate,holin,integrase,terminase,capsid

attL 1722472:1722491|attR 1769010:1769029

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1722472:1722491	attL	NA	NA	NA	NA
WP_049962098.1\|1722760_1722988_-	hypothetical protein	A8ATC5	Listeria_phage	7.6e-31	85.7
WP_031648625.1\|1723297_1723663_+	hypothetical protein	A8ATJ4	Listeria_phage	3.8e-56	94.2
WP_023559354.1\|1723676_1723880_+	hypothetical protein	A8ATJ3	Listeria_phage	2.6e-30	95.5
WP_003731542.1\|1723907_1724129_+	helix-turn-helix transcriptional regulator	A8ATJ2	Listeria_phage	3.5e-33	95.9
WP_003731541.1\|1724190_1725024_-	N-acetylmuramoyl-L-alanine amidase	A0A1S7FZ94	Listeria_phage	2.5e-47	43.8
WP_031648624.1\|1725026_1725281_-\|holin	phage holin	A8ATJ0	Listeria_phage	9.4e-38	95.2
WP_023559355.1\|1725291_1725507_-	LysM peptidoglycan-binding domain-containing protein	A8ATI9	Listeria_phage	6.3e-27	94.4
WP_003731538.1\|1725526_1725973_-	hypothetical protein	A8ATI8	Listeria_phage	1.7e-63	95.9
WP_003731537.1\|1725948_1726395_-	hypothetical protein	A8ATI7	Listeria_phage	9.3e-73	97.3
WP_003731536.1\|1726582_1726924_-	hypothetical protein	A8ATI5	Listeria_phage	1.5e-43	93.5
WP_003731535.1\|1726929_1727658_-	hypothetical protein	A8ATI4	Listeria_phage	2.7e-130	93.4
WP_077397295.1\|1727679_1728321_-	hypothetical protein	A8ATI3	Listeria_phage	2.2e-112	98.6
WP_046811237.1\|1728310_1729462_-\|plate	baseplate J/gp47 family protein	A8ATI2	Listeria_phage	2.4e-165	77.0
WP_003731532.1\|1729454_1729817_-	DUF2634 domain-containing protein	A8ATI1	Listeria_phage	2.0e-41	70.0
WP_003731531.1\|1729813_1730152_-	hypothetical protein	A8ATI0	Listeria_phage	8.0e-53	92.0
WP_003731530.1\|1730152_1730959_-	hypothetical protein	A8ATH9	Listeria_phage	3.0e-130	85.8
WP_003731529.1\|1730964_1731336_-	hypothetical protein	A8ATH8	Listeria_phage	5.4e-50	77.0
WP_023559357.1\|1731335_1731884_-	LysM peptidoglycan-binding domain-containing protein	A8ATH7	Listeria_phage	5.4e-83	84.5
WP_031642246.1\|1731889_1736926_-	peptidoglycan DD-metalloendopeptidase family protein	A8ATH6	Listeria_phage	0.0e+00	74.7
WP_031642248.1\|1736927_1737140_-	hypothetical protein	A8ATH5	Listeria_phage	1.9e-28	91.4
WP_049961612.1\|1737102_1737459_-	hypothetical protein	A8ATH4	Listeria_phage	2.3e-58	97.5
WP_049961613.1\|1737511_1737910_-	hypothetical protein	A8ATH3	Listeria_phage	4.0e-67	99.2
WP_031648614.1\|1737926_1738922_-	DUF3383 family protein	A8ATH2	Listeria_phage	7.9e-181	99.1
WP_031648613.1\|1738926_1739409_-	hypothetical protein	A8ATH1	Listeria_phage	1.1e-82	96.9
WP_031648612.1\|1739398_1739773_-	hypothetical protein	A8ATH0	Listeria_phage	8.6e-64	96.8
WP_031648611.1\|1739772_1740372_-	hypothetical protein	A8ATG9	Listeria_phage	3.7e-109	98.5
WP_031648610.1\|1740371_1740707_-	DUF4054 domain-containing protein	A8ATG8	Listeria_phage	3.6e-53	99.1
WP_031648609.1\|1740718_1741105_-	hypothetical protein	A8ATG7	Listeria_phage	1.0e-59	92.2
WP_031648608.1\|1741127_1742033_-	encapsulin	A8ATG6	Listeria_phage	8.8e-163	98.0
WP_077397296.1\|1742301_1743672_-\|capsid	minor capsid protein	A8ATG2	Listeria_phage	8.2e-245	96.0
WP_069029546.1\|1743664_1745050_-	DUF1073 domain-containing protein	A8ATG1	Listeria_phage	5.7e-262	98.5
WP_077397297.1\|1745063_1746497_-\|terminase	phage terminase large subunit	A8ATG0	Listeria_phage	8.4e-192	65.5
WP_003731509.1\|1747355_1747643_-	hypothetical protein	A0A0S2MYE7	Enterococcus_phage	9.9e-20	55.4
WP_003731508.1\|1747676_1747907_-	hypothetical protein	A8ATN7	Listeria_phage	3.7e-33	98.7
WP_003731507.1\|1748036_1748234_-	hypothetical protein	A8ATN6	Listeria_phage	5.2e-28	100.0
WP_069029548.1\|1748281_1749619_-	ParB N-terminal domain-containing protein	A8ATN5	Listeria_phage	5.7e-243	94.2
WP_046811224.1\|1749691_1750168_-	hypothetical protein	A0A1P8BMT7	Lactococcus_phage	5.5e-07	30.2
WP_003731502.1\|1751260_1751683_-	hypothetical protein	A8ATM9	Listeria_phage	6.3e-71	100.0
WP_046811221.1\|1751763_1752324_-	phage protein	A8ATM8	Listeria_phage	4.5e-101	95.7
WP_003731500.1\|1752335_1752587_-	DUF3850 domain-containing protein	A8ATM7	Listeria_phage	9.9e-40	95.2
WP_069029549.1\|1752936_1753272_-	hypothetical protein	A8ATZ5	Listeria_phage	4.6e-08	93.1
WP_061092529.1\|1753271_1753460_-	hypothetical protein	NA	NA	NA	NA
WP_069029551.1\|1753665_1753947_-	hypothetical protein	NA	NA	NA	NA
WP_003727764.1\|1753943_1754129_-	hypothetical protein	A0A059T5G1	Listeria_phage	4.1e-27	100.0
WP_069029552.1\|1754269_1754524_-	hypothetical protein	A0A059T6G3	Listeria_phage	9.7e-27	74.4
WP_176716633.1\|1754520_1754658_-	hypothetical protein	NA	NA	NA	NA
WP_069029553.1\|1754674_1756036_-	PcfJ domain-containing protein	A8ATM0	Listeria_phage	1.7e-189	71.7
WP_069029554.1\|1756032_1756455_-	hypothetical protein	A8ATL9	Listeria_phage	5.7e-48	74.3
WP_003731490.1\|1756471_1756648_-	hypothetical protein	A8ATL8	Listeria_phage	2.0e-23	100.0
WP_069029555.1\|1756607_1756988_-	hypothetical protein	A8ATL7	Listeria_phage	4.6e-65	94.4
WP_046811212.1\|1757028_1757649_-	hypothetical protein	A8ATL6	Listeria_phage	6.1e-107	98.1
WP_046811211.1\|1757668_1758106_-	RusA family crossover junction endodeoxyribonuclease	A8ATL5	Listeria_phage	8.5e-71	91.0
WP_046811210.1\|1758086_1758326_-	hypothetical protein	A8ATL4	Listeria_phage	3.6e-31	98.6
WP_046811277.1\|1758282_1758504_-	hypothetical protein	A8ATL3	Listeria_phage	1.2e-28	85.3
WP_031648583.1\|1758687_1759503_-	ATP-binding protein	A8ATL1	Listeria_phage	4.1e-143	99.3
WP_069029556.1\|1759426_1760347_-	DUF4373 domain-containing protein	A8ATL0	Listeria_phage	5.8e-162	95.8
WP_077397299.1\|1760358_1761096_-	MBL fold metallo-hydrolase	A8ATK9	Listeria_phage	1.3e-132	97.1
WP_003731480.1\|1761055_1761841_-	phage recombination protein Bet	A8ATK8	Listeria_phage	7.9e-144	100.0
WP_069029558.1\|1761841_1763785_-	AAA family ATPase	A8ATK7	Listeria_phage	0.0e+00	99.8
WP_003731478.1\|1763771_1764113_-	hypothetical protein	A8ATK6	Listeria_phage	1.2e-56	100.0
WP_003731477.1\|1764130_1764358_-	hypothetical protein	A8ATK5	Listeria_phage	1.8e-32	100.0
WP_003731476.1\|1764535_1764826_-	hypothetical protein	A8ATK4	Listeria_phage	4.6e-49	100.0
WP_049872582.1\|1764975_1765170_-	hypothetical protein	A8ATK3	Listeria_phage	9.4e-22	100.0
WP_003731474.1\|1765144_1765438_-	helix-turn-helix domain-containing protein	A8ATK2	Listeria_phage	2.3e-48	100.0
WP_003731473.1\|1765452_1765977_-	hypothetical protein	A8ATK1	Listeria_phage	5.5e-93	100.0
WP_003731472.1\|1766053_1766239_-	helix-turn-helix transcriptional regulator	A8ATK0	Listeria_phage	1.2e-29	100.0
WP_003731471.1\|1766399_1766828_+	helix-turn-helix transcriptional regulator	A8ATJ9	Listeria_phage	4.0e-73	100.0
WP_003731470.1\|1766844_1767264_+	ImmA/IrrE family metallo-endopeptidase	A8ATJ8	Listeria_phage	4.0e-78	100.0
WP_003731469.1\|1767311_1767704_+	hypothetical protein	A8ATJ7	Listeria_phage	2.3e-59	100.0
WP_003731468.1\|1767800_1768976_+\|integrase	site-specific integrase	A8ATJ6	Listeria_phage	6.2e-225	100.0
1769010:1769029	attR	NA	NA	NA	NA

DBSCAN-SWA_5

1842790 : 1877070

Erysipelothrix_phage(75.0%)

protease,holin,terminase,head,capsid,portal,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_064034125.1\|1842790_1843753_-	N-acetylmuramoyl-L-alanine amidase	A0A1D8ETE4	Propionibacterium_phage	1.0e-31	42.8
WP_064034199.1\|1843742_1844159_-\|holin	phage holin family protein	A0A2K5B2A2	Erysipelothrix_phage	8.1e-39	57.4
WP_064034126.1\|1844207_1844627_-	DUF1617 family protein	A0A1I9KKA6	Lactobacillus_phage	8.3e-07	26.3
WP_171840269.1\|1844613_1844775_-	hypothetical protein	NA	NA	NA	NA
WP_064034127.1\|1844787_1848849_-\|tail	phage tail protein	A0A1B1P770	Bacillus_phage	1.5e-89	40.4
WP_064034128.1\|1848845_1849538_-\|tail	phage tail protein	A0A1L2BYA2	Clostridium_phage	1.6e-18	28.1
WP_064034129.1\|1849599_1849974_-	MerR family transcriptional regulator	NA	NA	NA	NA
WP_064034130.1\|1849976_1850864_-	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	2.6e-42	38.4
WP_064034131.1\|1850989_1853551_-	hypothetical protein	A0A2K5B297	Erysipelothrix_phage	2.3e-83	74.1
WP_064034132.1\|1853657_1854155_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_021722431.1\|1854413_1854797_-	hypothetical protein	A0A2K5B295	Erysipelothrix_phage	2.4e-37	65.0
WP_064034134.1\|1854806_1855397_-\|tail	phage tail protein	A0A2K5B294	Erysipelothrix_phage	4.8e-77	72.7
WP_064034135.1\|1855398_1855740_-	hypothetical protein	A0A2K5B293	Erysipelothrix_phage	1.1e-28	51.3
WP_064034136.1\|1855736_1856168_-	HK97 gp10 family phage protein	A0A2K5B292	Erysipelothrix_phage	5.0e-39	60.7
WP_064034137.1\|1856160_1856499_-\|head,tail	head-tail adaptor protein	A0A2K5B291	Erysipelothrix_phage	6.6e-23	53.8
WP_064034138.1\|1856495_1856807_-\|head,tail	phage gp6-like head-tail connector protein	A0A2K5B290	Erysipelothrix_phage	2.2e-36	75.0
WP_064034139.1\|1856817_1858032_-\|capsid	phage major capsid protein	A0A2I4R671	Erysipelothrix_phage	7.8e-106	50.1
WP_072238045.1\|1858035_1858797_-\|protease	Clp protease ClpP	E4ZFM4	Streptococcus_phage	2.1e-61	56.1
WP_064034140.1\|1858693_1860055_-\|portal	phage portal protein	A0A2K5B287	Erysipelothrix_phage	1.3e-178	74.1
WP_064034141.1\|1860115_1860661_-	DUF1643 domain-containing protein	NA	NA	NA	NA
WP_064034142.1\|1860650_1860902_-	hypothetical protein	NA	NA	NA	NA
WP_171840268.1\|1860974_1862582_-\|terminase	terminase large subunit	A0A2K5B285	Erysipelothrix_phage	1.0e-270	85.1
WP_064034144.1\|1862626_1862851_-	hypothetical protein	A0A2K5B284	Erysipelothrix_phage	4.9e-14	43.2
WP_077346447.1\|1862840_1863038_-	DUF5049 domain-containing protein	NA	NA	NA	NA
WP_064034146.1\|1863012_1863207_-	hypothetical protein	NA	NA	NA	NA
WP_064034147.1\|1863209_1863602_-	DUF4314 domain-containing protein	A0A2K5B281	Erysipelothrix_phage	2.2e-17	55.7
WP_102135822.1\|1863689_1864940_-	site-specific DNA-methyltransferase	A0A2I4R670	Erysipelothrix_phage	1.8e-142	60.9
WP_064034148.1\|1864940_1865723_-	S-adenosylmethionine synthetase	NA	NA	NA	NA
WP_032946741.1\|1865727_1866306_-\|terminase	terminase	A0A2K5B277	Erysipelothrix_phage	8.1e-53	51.8
WP_077346449.1\|1866436_1866796_-	HNH endonuclease	A0A2K5B276	Erysipelothrix_phage	2.4e-31	56.6
WP_064034150.1\|1866973_1867402_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_102135821.1\|1867398_1868622_-	DEAD/DEAH box helicase	A0A2K5B273	Erysipelothrix_phage	2.4e-163	71.3
WP_064034151.1\|1868752_1869040_-	VRR-NUC domain-containing protein	A0A2K5B272	Erysipelothrix_phage	1.9e-26	62.1
WP_064034152.1\|1869036_1869246_-	hypothetical protein	NA	NA	NA	NA
WP_064034153.1\|1869373_1871620_-	primase C-terminal domain-containing protein	A0A1B0RXC5	Streptococcus_phage	2.9e-207	49.0
WP_064034154.1\|1871612_1871957_-	hypothetical protein	A0A2K5B270	Erysipelothrix_phage	2.4e-28	51.4
WP_064034155.1\|1871949_1872162_-	hypothetical protein	A0A2K5B269	Erysipelothrix_phage	1.8e-18	62.1
WP_064034156.1\|1872166_1872835_-	Rha family transcriptional regulator	A0A2K5B268	Erysipelothrix_phage	1.8e-64	54.5
WP_064034157.1\|1872986_1874927_-	DNA polymerase	A0A2K5B2B0	Erysipelothrix_phage	1.8e-274	69.5
WP_064034158.1\|1875078_1875627_-	DUF2815 family protein	A0A2K5B2A9	Erysipelothrix_phage	1.4e-83	84.2
WP_077397300.1\|1875628_1876762_-	DUF2800 domain-containing protein	M1Q218	Streptococcus_phage	3.8e-123	58.9
WP_064034160.1\|1876761_1877070_-	hypothetical protein	A0A2K5B2A7	Erysipelothrix_phage	2.1e-15	52.0

DBSCAN-SWA_6

1957865 : 1966151

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003726209.1\|1957865_1958432_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	8.3e-26	36.4
WP_003726210.1\|1958428_1959478_-	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	3.2e-63	44.4
WP_003722245.1\|1959496_1960924_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	1.1e-53	34.6
WP_009918191.1\|1960908_1963128_-	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	6.5e-159	40.8
WP_003726212.1\|1963120_1963804_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_003722248.1\|1963807_1964053_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_003726214.1\|1964064_1964778_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A0E3F9V5	Synechococcus_phage	2.0e-40	38.3
WP_003729814.1\|1964858_1966151_-	adenylosuccinate lyase	A0A1B3B081	Gordonia_phage	2.5e-17	33.0

DBSCAN-SWA_7

2635634 : 2643476

Streptococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003725407.1\|2635634_2636606_-	DNA-binding protein WhiA	Q7AWZ3	Streptococcus_phage	5.2e-52	39.4
WP_003731212.1\|2636613_2637582_-	YvcK family protein	A1IMD5	Streptococcus_phage	1.8e-68	43.6
WP_003722606.1\|2637583_2638459_-	RNase adapter RapZ	A0A0R8VB27	Thermobifida_phage	1.9e-08	29.7
WP_009927825.1\|2638566_2640297_-	phospho-sugar mutase	A0A1X9I671	Streptococcus_phage	2.1e-173	53.1
WP_009918600.1\|2640338_2641400_-	galactose mutarotase	NA	NA	NA	NA
WP_009918601.1\|2641416_2642400_-	UDP-glucose 4-epimerase GalE	A0A2K9L5H6	Tupanvirus	3.1e-52	38.7
WP_003722610.1\|2642516_2643476_-	thioredoxin-disulfide reductase	G3MA85	Bacillus_virus	2.0e-88	53.7

DBSCAN-SWA_8

2757791 : 2792974

Listeria_phage(95.83%)

tail,integrase,terminase

attL 2757168:2757217|attR 2794216:2794265

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2757168:2757217	attL	NA	NA	NA	NA
WP_012951560.1\|2757791_2758790_-	DUF3644 domain-containing protein	A0A0N9RUA4	Staphylococcus_phage	3.9e-71	44.8
WP_149866930.1\|2759536_2759647_-	hypothetical protein	A0A059T684	Listeria_phage	5.3e-06	86.2
WP_031659993.1\|2759646_2759955_-	hypothetical protein	A0A059T5E6	Listeria_phage	3.9e-38	88.9
WP_031659992.1\|2760006_2762169_-\|tail	phage tail protein	A8ATW1	Listeria_phage	0.0e+00	98.6
WP_026747248.1\|2762181_2763750_-\|tail	phage tail family protein	A8ATW0	Listeria_phage	5.8e-303	99.0
WP_077397314.1\|2763746_2768546_-\|tail	phage tail tape measure protein	A8ATV9	Listeria_phage	0.0e+00	86.6
WP_077397315.1\|2768550_2768862_-	hypothetical protein	A0A0B5D116	Listeria_phage	1.3e-41	96.7
WP_003733698.1\|2768858_2769290_-	hypothetical protein	A8ATV7	Listeria_phage	4.0e-73	97.9
WP_003733697.1\|2769344_2770034_-	Ig domain-containing protein	A8ATV6	Listeria_phage	2.8e-100	85.6
WP_003725064.1\|2770038_2770410_-	hypothetical protein	A8ATV5	Listeria_phage	8.5e-64	100.0
WP_003733696.1\|2770406_2770724_-	HK97 gp10 family phage protein	A8ATV4	Listeria_phage	4.6e-50	96.2
WP_003733695.1\|2770713_2771079_-	hypothetical protein	A8ATV3	Listeria_phage	9.9e-65	99.2
WP_031641279.1\|2771078_2771432_-	hypothetical protein	A8ATV2	Listeria_phage	5.4e-60	98.3
WP_003723786.1\|2771432_2771588_-	hypothetical protein	A0A0B5CYK6	Listeria_phage	1.0e-18	98.0
WP_003723787.1\|2771601_2772474_-	hypothetical protein	A0A0B5CTX8	Listeria_phage	2.3e-152	93.8
WP_031648717.1\|2772496_2773051_-	hypothetical protein	A0A0B5CTR8	Listeria_phage	2.2e-87	98.9
WP_023548506.1\|2773146_2774190_-	hypothetical protein	A0A0B5D111	Listeria_phage	3.7e-197	97.7
WP_023548504.1\|2774194_2775751_-	hypothetical protein	A0A0B5D0A6	Listeria_phage	1.9e-298	98.3
WP_003725072.1\|2775765_2777112_-\|terminase	PBSX family phage terminase large subunit	A0A0B5CYJ6	Listeria_phage	2.7e-253	94.1
WP_070755920.1\|2777077_2777818_-	TerS	A0A0B5CTX0	Listeria_phage	4.5e-133	98.0
WP_003723793.1\|2777857_2778085_-	hypothetical protein	A0A0B5CTV3	Listeria_phage	6.8e-32	94.7
WP_026747232.1\|2778378_2778813_-	hypothetical protein	A8AU03	Listeria_phage	6.2e-66	87.5
WP_031659968.1\|2778955_2779360_-	endodeoxyribonuclease	A8AU00	Listeria_phage	2.2e-65	91.0
WP_115904973.1\|2779325_2779466_-	BH0509 family protein	A8ATZ9	Listeria_phage	9.4e-16	89.1
WP_039379240.1\|2779462_2779768_-	transcriptional regulator	A8ATZ8	Listeria_phage	9.5e-45	97.0
WP_039379243.1\|2779799_2780282_-	single-stranded DNA-binding protein	A8ASP5	Listeria_phage	7.9e-78	92.5
WP_077397316.1\|2780281_2780683_-	hypothetical protein	A8ATZ6	Listeria_phage	3.0e-62	91.7
WP_039379248.1\|2780679_2781039_-	hypothetical protein	A0A059T801	Listeria_phage	2.9e-45	91.0
WP_039379251.1\|2781054_2781402_-	hypothetical protein	A0A059T8V4	Listeria_phage	1.2e-56	87.8
WP_070755922.1\|2781587_2781860_-	hypothetical protein	A0A059T7Z9	Listeria_phage	5.7e-41	91.1
WP_003731704.1\|2781856_2782186_-	hypothetical protein	A8ATE1	Listeria_phage	1.1e-57	100.0
WP_003731703.1\|2782186_2782363_-	hypothetical protein	A0A076G7F4	Listeria_phage	1.9e-21	87.9
WP_003731702.1\|2782466_2783000_-	pentapeptide repeat-containing protein	A0A060AFJ6	Listeria_phage	2.2e-44	85.2
WP_031645726.1\|2782996_2783521_-	hypothetical protein	A8ASP1	Listeria_phage	1.8e-35	53.4
WP_031645727.1\|2783517_2784072_-	DUF1642 domain-containing protein	A8ATY9	Listeria_phage	7.2e-83	79.0
WP_031645728.1\|2784068_2784749_-	hypothetical protein	A8ATD7	Listeria_phage	6.9e-120	96.0
WP_023548469.1\|2784761_2785706_-\|integrase	site-specific integrase	A8ATD6	Listeria_phage	1.7e-177	98.4
WP_077397317.1\|2785716_2786430_-	SAM-dependent DNA methyltransferase	A8ATD5	Listeria_phage	9.4e-128	96.2
WP_070755997.1\|2786426_2787359_-	DnaD domain-containing protein	A8ATY7	Listeria_phage	1.0e-166	99.0
WP_010991173.1\|2787378_2788194_-	recombinase RecT	A8ATY6	Listeria_phage	3.5e-150	98.9
WP_077397318.1\|2788193_2789153_-	YqaJ viral recombinase family protein	A8ATY5	Listeria_phage	3.6e-175	97.5
WP_010989962.1\|2789384_2789573_-	hypothetical protein	Q9T175	Listeria_phage	2.0e-21	79.0
WP_069003310.1\|2789674_2789881_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_047933406.1\|2789870_2790401_-	hypothetical protein	A0A0B5D173	Listeria_phage	3.9e-78	87.9
WP_077397319.1\|2790526_2791300_-	Rha family transcriptional regulator	R9QMT9	Lactococcus_phage	2.1e-40	41.4
WP_064659211.1\|2791301_2791499_-	hypothetical protein	NA	NA	NA	NA
WP_003731220.1\|2791502_2791754_-	helix-turn-helix transcriptional regulator	A8ATX6	Listeria_phage	7.6e-40	100.0
WP_026750223.1\|2791902_2792211_+	helix-turn-helix transcriptional regulator	A8ATX5	Listeria_phage	2.7e-47	99.0
WP_012951966.1\|2792241_2792733_+	hypothetical protein	A8ATX4	Listeria_phage	2.9e-91	99.4
WP_003727739.1\|2792755_2792974_+	zinc-ribbon domain-containing protein	A0A059T6E3	Listeria_phage	5.4e-34	100.0
2794216:2794265	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP019622

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection