Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP019623 Listeria monocytogenes strain 10-092876-1763 LM10 chromosome, complete genome 4 crisprs DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,cas2,DEDDh,csa3 2 22 5 1

Results visualization

1. NZ_CP019623
Click the left colored region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP019623_1 209696-209847 Unclear NA
1 spacers
cas3

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP019623_2 521148-521732 Orphan NA
7 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP019623_3 559575-560059 Unclear I-A
7 spacers
cas6

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP019623_4 576462-578690 Unclear I-A
34 spacers
cas2,cas3,cas5,cas7,cas8b2,cas6

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP019623_4 4.26|578112|34|NZ_CP019623|PILER-CR,CRISPRCasFinder,CRT 578112-578145 34 NZ_CP019623.1 573530-573563 0 1.0
NZ_CP019623_2 2.6|521577|39|NZ_CP019623|CRT 521577-521615 39 NZ_CP019623.1 519372-519410 1 0.974

1. spacer 4.26|578112|34|NZ_CP019623|PILER-CR,CRISPRCasFinder,CRT matches to position: 573530-573563, mismatch: 0, identity: 1.0

ataaattatccgtatgttcttgaattgtttcttc	CRISPR spacer
ataaattatccgtatgttcttgaattgtttcttc	Protospacer
**********************************

2. spacer 2.6|521577|39|NZ_CP019623|CRT matches to position: 519372-519410, mismatch: 1, identity: 0.974

cgtgccatgtttgctggttgtactagtcttgaagcgtta	CRISPR spacer
cgtgccatgtttgctggctgtactagtcttgaagcgtta	Protospacer
*****************.*********************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP019623_3 3.1|559604|35|NZ_CP019623|PILER-CR,CRISPRCasFinder,CRT 559604-559638 35 KJ094023 Listeria phage LP-101, complete genome 6873-6907 0 1.0
NZ_CP019623_3 3.2|559668|34|NZ_CP019623|PILER-CR,CRISPRCasFinder,CRT 559668-559701 34 NZ_CP011399 Listeria monocytogenes strain CFSAN008100 plasmid pCFSAN008100, complete sequence 60292-60325 0 1.0
NZ_CP019623_3 3.2|559668|34|NZ_CP019623|PILER-CR,CRISPRCasFinder,CRT 559668-559701 34 KJ094023 Listeria phage LP-101, complete genome 27168-27201 0 1.0
NZ_CP019623_3 3.4|559798|35|NZ_CP019623|PILER-CR,CRISPRCasFinder,CRT 559798-559832 35 NC_003216 Listeria phage A118, complete genome 34139-34173 0 1.0
NZ_CP019623_3 3.4|559798|35|NZ_CP019623|PILER-CR,CRISPRCasFinder,CRT 559798-559832 35 AJ242593 Bacteriophage A118 complete genome 34139-34173 0 1.0
NZ_CP019623_3 3.4|559798|35|NZ_CP019623|PILER-CR,CRISPRCasFinder,CRT 559798-559832 35 MH341452 Listeria phage PSU-VKH-LP040, complete genome 32598-32632 0 1.0
NZ_CP019623_3 3.4|559798|35|NZ_CP019623|PILER-CR,CRISPRCasFinder,CRT 559798-559832 35 DQ003642 Listeria phage A006, complete genome 31434-31468 0 1.0
NZ_CP019623_4 4.6|576816|36|NZ_CP019623|PILER-CR,CRISPRCasFinder,CRT 576816-576851 36 KJ094023 Listeria phage LP-101, complete genome 18341-18376 0 1.0
NZ_CP019623_4 4.16|577468|36|NZ_CP019623|PILER-CR,CRISPRCasFinder,CRT 577468-577503 36 NC_003216 Listeria phage A118, complete genome 18563-18598 0 1.0
NZ_CP019623_4 4.16|577468|36|NZ_CP019623|PILER-CR,CRISPRCasFinder,CRT 577468-577503 36 AJ242593 Bacteriophage A118 complete genome 18563-18598 0 1.0
NZ_CP019623_4 4.20|577725|34|NZ_CP019623|PILER-CR,CRISPRCasFinder,CRT 577725-577758 34 NC_003216 Listeria phage A118, complete genome 19172-19205 0 1.0
NZ_CP019623_4 4.20|577725|34|NZ_CP019623|PILER-CR,CRISPRCasFinder,CRT 577725-577758 34 AJ242593 Bacteriophage A118 complete genome 19172-19205 0 1.0
NZ_CP019623_3 3.1|559604|35|NZ_CP019623|PILER-CR,CRISPRCasFinder,CRT 559604-559638 35 NZ_LR134403 Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence 216400-216434 1 0.971
NZ_CP019623_3 3.3|559731|38|NZ_CP019623|PILER-CR,CRISPRCasFinder,CRT 559731-559768 38 MH341451 Listeria phage PSU-VKH-LP019, complete genome 10625-10662 1 0.974
NZ_CP019623_4 4.5|576751|36|NZ_CP019623|PILER-CR,CRISPRCasFinder,CRT 576751-576786 36 KJ094023 Listeria phage LP-101, complete genome 17910-17945 1 0.972
NZ_CP019623_4 4.8|576947|35|NZ_CP019623|PILER-CR,CRISPRCasFinder,CRT 576947-576981 35 MH341452 Listeria phage PSU-VKH-LP040, complete genome 377-411 1 0.971
NZ_CP019623_4 4.8|576947|35|NZ_CP019623|PILER-CR,CRISPRCasFinder,CRT 576947-576981 35 KP399678 Listeria phage vB_LmoS_293, complete genome 330-364 1 0.971
NZ_CP019623_4 4.27|578175|35|NZ_CP019623|PILER-CR,CRISPRCasFinder,CRT 578175-578209 35 NC_009813 Listeria phage B054, complete genome 21546-21580 1 0.971
NZ_CP019623_4 4.32|578495|37|NZ_CP019623|PILER-CR,CRISPRCasFinder,CRT 578495-578531 37 KY705255 Streptococcus phage P0095, complete genome 33666-33702 1 0.973
NZ_CP019623_4 4.32|578495|37|NZ_CP019623|PILER-CR,CRISPRCasFinder,CRT 578495-578531 37 KY705251 Streptococcus phage P0091, complete genome 32778-32814 1 0.973
NZ_CP019623_4 4.32|578495|37|NZ_CP019623|PILER-CR,CRISPRCasFinder,CRT 578495-578531 37 KX879643 Streptococcus phage CHPC1151, complete genome 31697-31733 1 0.973
NZ_CP019623_4 4.32|578495|37|NZ_CP019623|PILER-CR,CRISPRCasFinder,CRT 578495-578531 37 MK202161 Streptococcus phage CHPC1282, complete genome 32484-32520 1 0.973
NZ_CP019623_4 4.32|578495|37|NZ_CP019623|PILER-CR,CRISPRCasFinder,CRT 578495-578531 37 KY705252 Streptococcus phage P0092, complete genome 31845-31881 1 0.973
NZ_CP019623_4 4.32|578495|37|NZ_CP019623|PILER-CR,CRISPRCasFinder,CRT 578495-578531 37 MH937506 Streptococcus phage CHPC1148, complete genome 35552-35588 1 0.973
NZ_CP019623_4 4.32|578495|37|NZ_CP019623|PILER-CR,CRISPRCasFinder,CRT 578495-578531 37 KY705253 Streptococcus phage P0093, complete genome 32631-32667 1 0.973
NZ_CP019623_4 4.32|578495|37|NZ_CP019623|PILER-CR,CRISPRCasFinder,CRT 578495-578531 37 KY705254 Streptococcus phage P0094, complete genome 31034-31070 1 0.973
NZ_CP019623_3 3.2|559668|34|NZ_CP019623|PILER-CR,CRISPRCasFinder,CRT 559668-559701 34 NC_021539 Listeria phage LP-030-2, complete genome 23033-23066 2 0.941
NZ_CP019623_3 3.2|559668|34|NZ_CP019623|PILER-CR,CRISPRCasFinder,CRT 559668-559701 34 AJ312240 Bacteriophage PSA complete genome 22756-22789 2 0.941
NZ_CP019623_3 3.3|559731|38|NZ_CP019623|PILER-CR,CRISPRCasFinder,CRT 559731-559768 38 DQ003642 Listeria phage A006, complete genome 10641-10678 2 0.947
NZ_CP019623_4 4.15|577403|36|NZ_CP019623|PILER-CR,CRISPRCasFinder,CRT 577403-577438 36 MH341453 Listeria phage PSU-VKH-LP041, complete genome 26132-26167 2 0.944
NZ_CP019623_4 4.21|577788|36|NZ_CP019623|PILER-CR,CRISPRCasFinder,CRT 577788-577823 36 KJ094022 Listeria phage LP-030-3, complete genome 38302-38337 2 0.944
NZ_CP019623_4 4.28|578239|37|NZ_CP019623|PILER-CR,CRISPRCasFinder,CRT 578239-578275 37 KJ094023 Listeria phage LP-101, complete genome 37501-37537 2 0.946
NZ_CP019623_4 4.32|578495|37|NZ_CP019623|PILER-CR,CRISPRCasFinder,CRT 578495-578531 37 MN689509 Lactococcus phage CHPC1175, complete genome 29544-29580 2 0.946
NZ_CP019623_4 4.32|578495|37|NZ_CP019623|PILER-CR,CRISPRCasFinder,CRT 578495-578531 37 MK448735 Streptococcus phage Javan349, complete genome 11483-11519 2 0.946
NZ_CP019623_4 4.8|576947|35|NZ_CP019623|PILER-CR,CRISPRCasFinder,CRT 576947-576981 35 DQ003637 Listeria phage A500, complete genome 334-368 3 0.914
NZ_CP019623_4 4.8|576947|35|NZ_CP019623|PILER-CR,CRISPRCasFinder,CRT 576947-576981 35 KJ094022 Listeria phage LP-030-3, complete genome 8756-8790 3 0.914
NZ_CP019623_3 3.4|559798|35|NZ_CP019623|PILER-CR,CRISPRCasFinder,CRT 559798-559832 35 KP399677 Listeria phage vB_LmoS_188, complete genome 31932-31966 4 0.886
NZ_CP019623_3 3.4|559798|35|NZ_CP019623|PILER-CR,CRISPRCasFinder,CRT 559798-559832 35 KP399678 Listeria phage vB_LmoS_293, complete genome 33169-33203 4 0.886
NZ_CP019623_4 4.5|576751|36|NZ_CP019623|PILER-CR,CRISPRCasFinder,CRT 576751-576786 36 NZ_LR134403 Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence 227438-227473 4 0.889
NZ_CP019623_4 4.24|577983|36|NZ_CP019623|PILER-CR,CRISPRCasFinder,CRT 577983-578018 36 FW590615 JP 2010534058-A/25: ANTIBIOTIC RESISTANCE FREE LISTERIA STRAINS AND METHODS FOR CONSTRUCTING AND USING SAME 3844-3879 4 0.889
NZ_CP019623_4 4.24|577983|36|NZ_CP019623|PILER-CR,CRISPRCasFinder,CRT 577983-578018 36 HI504184 Sequence 26 from Patent EP2147092 3844-3879 4 0.889
NZ_CP019623_4 4.24|577983|36|NZ_CP019623|PILER-CR,CRISPRCasFinder,CRT 577983-578018 36 AJ417489 bacteriophage U153 int gene for U153 integrase 3844-3879 4 0.889
NZ_CP019623_4 4.18|577596|34|NZ_CP019623|PILER-CR,CRISPRCasFinder,CRT 577596-577629 34 NC_022111 Prevotella sp. oral taxon 299 str. F0039 plasmid, complete sequence 1764851-1764884 6 0.824
NZ_CP019623_4 4.33|578561|35|NZ_CP019623|PILER-CR,CRISPRCasFinder,CRT 578561-578595 35 MN694189 Marine virus AFVG_250M578, complete genome 47879-47913 6 0.829
NZ_CP019623_4 4.12|577208|36|NZ_CP019623|PILER-CR,CRISPRCasFinder,CRT 577208-577243 36 AP013647 Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C72-MedDCM-OCT-S41-C96, *** SEQUENCING IN PROGRESS *** 13305-13340 8 0.778
NZ_CP019623_4 4.24|577983|36|NZ_CP019623|PILER-CR,CRISPRCasFinder,CRT 577983-578018 36 NC_019743 Microcoleus sp. PCC 7113 plasmid pMIC7113.08, complete sequence 4997-5032 8 0.778
NZ_CP019623_4 4.26|578112|34|NZ_CP019623|PILER-CR,CRISPRCasFinder,CRT 578112-578145 34 KT070867 Bacillus phage PBC2, complete genome 75389-75422 8 0.765
NZ_CP019623_4 4.18|577596|34|NZ_CP019623|PILER-CR,CRISPRCasFinder,CRT 577596-577629 34 NZ_CP038863 Campylobacter jejuni strain SCJK2 plasmid unnamed1, complete sequence 39302-39335 9 0.735
NZ_CP019623_4 4.22|577853|35|NZ_CP019623|PILER-CR,CRISPRCasFinder,CRT 577853-577887 35 NC_014533 Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence 491525-491559 9 0.743
NZ_CP019623_4 4.33|578561|35|NZ_CP019623|PILER-CR,CRISPRCasFinder,CRT 578561-578595 35 MK448625 Streptococcus satellite phage Javan738, complete genome 5960-5994 9 0.743
NZ_CP019623_4 4.33|578561|35|NZ_CP019623|PILER-CR,CRISPRCasFinder,CRT 578561-578595 35 MK448449 Streptococcus satellite phage Javan356, complete genome 4490-4524 9 0.743
NZ_CP019623_4 4.33|578561|35|NZ_CP019623|PILER-CR,CRISPRCasFinder,CRT 578561-578595 35 MK448636 Streptococcus satellite phage Javan749, complete genome 6112-6146 9 0.743
NZ_CP019623_4 4.33|578561|35|NZ_CP019623|PILER-CR,CRISPRCasFinder,CRT 578561-578595 35 NZ_CP045037 Lactobacillus mali strain LM596 plasmid unnamed2, complete sequence 34734-34768 9 0.743
NZ_CP019623_4 4.33|578561|35|NZ_CP019623|PILER-CR,CRISPRCasFinder,CRT 578561-578595 35 NZ_CP018177 Lactobacillus hordei strain TMW 1.1822 plasmid pL11822-1, complete sequence 11325-11359 9 0.743
NZ_CP019623_4 4.33|578561|35|NZ_CP019623|PILER-CR,CRISPRCasFinder,CRT 578561-578595 35 NZ_CP018181 Lactobacillus nagelii strain TMW 1.1827 plasmid pL11827-1, complete sequence 63608-63642 9 0.743
NZ_CP019623_4 4.12|577208|36|NZ_CP019623|PILER-CR,CRISPRCasFinder,CRT 577208-577243 36 NZ_AP015030 Pseudomonas putida strain KF715 plasmid pKF715A, complete sequence 410342-410377 11 0.694
NZ_CP019623_4 4.12|577208|36|NZ_CP019623|PILER-CR,CRISPRCasFinder,CRT 577208-577243 36 NZ_CP018048 Pseudomonas aeruginosa strain DN1 plasmid unnamed1, complete sequence 142304-142339 11 0.694
NZ_CP019623_4 4.25|578048|35|NZ_CP019623|PILER-CR,CRISPRCasFinder,CRT 578048-578082 35 AP014250 Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S40-C9, *** SEQUENCING IN PROGRESS *** 20129-20163 11 0.686
NZ_CP019623_4 4.30|578367|34|NZ_CP019623|PILER-CR,CRISPRCasFinder,CRT 578367-578400 34 NZ_CP034816 Paracoccus sp. Arc7-R13 plasmid unnamed6, complete sequence 26153-26186 11 0.676
NZ_CP019623_4 4.26|578112|34|NZ_CP019623|PILER-CR,CRISPRCasFinder,CRT 578112-578145 34 NC_031922 Synechococcus phage S-CAM9 isolate 1109NB16, complete genome 146996-147029 12 0.647
NZ_CP019623_4 4.26|578112|34|NZ_CP019623|PILER-CR,CRISPRCasFinder,CRT 578112-578145 34 KU686204 Synechococcus phage S-CAM9 isolate 0808SB05, complete genome 146978-147011 12 0.647
NZ_CP019623_4 4.26|578112|34|NZ_CP019623|PILER-CR,CRISPRCasFinder,CRT 578112-578145 34 KU686205 Synechococcus phage S-CAM9 isolate 0908SB82, complete genome 146825-146858 12 0.647

1. spacer 3.1|559604|35|NZ_CP019623|PILER-CR,CRISPRCasFinder,CRT matches to KJ094023 (Listeria phage LP-101, complete genome) position: , mismatch: 0, identity: 1.0

ttggatgcaaaaactttaatagcctctgcatcaag	CRISPR spacer
ttggatgcaaaaactttaatagcctctgcatcaag	Protospacer
***********************************

2. spacer 3.2|559668|34|NZ_CP019623|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP011399 (Listeria monocytogenes strain CFSAN008100 plasmid pCFSAN008100, complete sequence) position: , mismatch: 0, identity: 1.0

aaatcaacgggtaaatatttactcacagagcttc	CRISPR spacer
aaatcaacgggtaaatatttactcacagagcttc	Protospacer
**********************************

3. spacer 3.2|559668|34|NZ_CP019623|PILER-CR,CRISPRCasFinder,CRT matches to KJ094023 (Listeria phage LP-101, complete genome) position: , mismatch: 0, identity: 1.0

aaatcaacgggtaaatatttactcacagagcttc	CRISPR spacer
aaatcaacgggtaaatatttactcacagagcttc	Protospacer
**********************************

4. spacer 3.4|559798|35|NZ_CP019623|PILER-CR,CRISPRCasFinder,CRT matches to NC_003216 (Listeria phage A118, complete genome) position: , mismatch: 0, identity: 1.0

gttgaactagaaaaactgcttgcttgggtagatga	CRISPR spacer
gttgaactagaaaaactgcttgcttgggtagatga	Protospacer
***********************************

5. spacer 3.4|559798|35|NZ_CP019623|PILER-CR,CRISPRCasFinder,CRT matches to AJ242593 (Bacteriophage A118 complete genome) position: , mismatch: 0, identity: 1.0

gttgaactagaaaaactgcttgcttgggtagatga	CRISPR spacer
gttgaactagaaaaactgcttgcttgggtagatga	Protospacer
***********************************

6. spacer 3.4|559798|35|NZ_CP019623|PILER-CR,CRISPRCasFinder,CRT matches to MH341452 (Listeria phage PSU-VKH-LP040, complete genome) position: , mismatch: 0, identity: 1.0

gttgaactagaaaaactgcttgcttgggtagatga	CRISPR spacer
gttgaactagaaaaactgcttgcttgggtagatga	Protospacer
***********************************

7. spacer 3.4|559798|35|NZ_CP019623|PILER-CR,CRISPRCasFinder,CRT matches to DQ003642 (Listeria phage A006, complete genome) position: , mismatch: 0, identity: 1.0

gttgaactagaaaaactgcttgcttgggtagatga	CRISPR spacer
gttgaactagaaaaactgcttgcttgggtagatga	Protospacer
***********************************

8. spacer 4.6|576816|36|NZ_CP019623|PILER-CR,CRISPRCasFinder,CRT matches to KJ094023 (Listeria phage LP-101, complete genome) position: , mismatch: 0, identity: 1.0

aagttcaaaacctcccacacccgctatgaataaatt	CRISPR spacer
aagttcaaaacctcccacacccgctatgaataaatt	Protospacer
************************************

9. spacer 4.16|577468|36|NZ_CP019623|PILER-CR,CRISPRCasFinder,CRT matches to NC_003216 (Listeria phage A118, complete genome) position: , mismatch: 0, identity: 1.0

ctggttactcaactggcgacagtaatacacctcaat	CRISPR spacer
ctggttactcaactggcgacagtaatacacctcaat	Protospacer
************************************

10. spacer 4.16|577468|36|NZ_CP019623|PILER-CR,CRISPRCasFinder,CRT matches to AJ242593 (Bacteriophage A118 complete genome) position: , mismatch: 0, identity: 1.0

ctggttactcaactggcgacagtaatacacctcaat	CRISPR spacer
ctggttactcaactggcgacagtaatacacctcaat	Protospacer
************************************

11. spacer 4.20|577725|34|NZ_CP019623|PILER-CR,CRISPRCasFinder,CRT matches to NC_003216 (Listeria phage A118, complete genome) position: , mismatch: 0, identity: 1.0

agaagcgttagcggcattgttcgaaagtaattta	CRISPR spacer
agaagcgttagcggcattgttcgaaagtaattta	Protospacer
**********************************

12. spacer 4.20|577725|34|NZ_CP019623|PILER-CR,CRISPRCasFinder,CRT matches to AJ242593 (Bacteriophage A118 complete genome) position: , mismatch: 0, identity: 1.0

agaagcgttagcggcattgttcgaaagtaattta	CRISPR spacer
agaagcgttagcggcattgttcgaaagtaattta	Protospacer
**********************************

13. spacer 3.1|559604|35|NZ_CP019623|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR134403 (Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence) position: , mismatch: 1, identity: 0.971

ttggatgcaaaaactttaatagcctctgcatcaag	CRISPR spacer
ttggatgcaaaaactttaatagcttctgcatcaag	Protospacer
***********************.***********

14. spacer 3.3|559731|38|NZ_CP019623|PILER-CR,CRISPRCasFinder,CRT matches to MH341451 (Listeria phage PSU-VKH-LP019, complete genome) position: , mismatch: 1, identity: 0.974

ctggtcctgtgctgatgattggcggaaaactagtaaca	CRISPR spacer
ctggtcctgtgctgatgattggcggaaaactagtatca	Protospacer
*********************************** **

15. spacer 4.5|576751|36|NZ_CP019623|PILER-CR,CRISPRCasFinder,CRT matches to KJ094023 (Listeria phage LP-101, complete genome) position: , mismatch: 1, identity: 0.972

cttcctactttttgacataaaaaataagccgagttg	CRISPR spacer
cttcctactttttgacataaaaaataagccgaattg	Protospacer
********************************.***

16. spacer 4.8|576947|35|NZ_CP019623|PILER-CR,CRISPRCasFinder,CRT matches to MH341452 (Listeria phage PSU-VKH-LP040, complete genome) position: , mismatch: 1, identity: 0.971

acgagtatcagcgctaaaagagattgttaagcgcc	CRISPR spacer
acgggtatcagcgctaaaagagattgttaagcgcc	Protospacer
***.*******************************

17. spacer 4.8|576947|35|NZ_CP019623|PILER-CR,CRISPRCasFinder,CRT matches to KP399678 (Listeria phage vB_LmoS_293, complete genome) position: , mismatch: 1, identity: 0.971

acgagtatcagcgctaaaagagattgttaagcgcc	CRISPR spacer
acgggtatcagcgctaaaagagattgttaagcgcc	Protospacer
***.*******************************

18. spacer 4.27|578175|35|NZ_CP019623|PILER-CR,CRISPRCasFinder,CRT matches to NC_009813 (Listeria phage B054, complete genome) position: , mismatch: 1, identity: 0.971

aaattttttgttgataagcatgcaggagcaaacaa	CRISPR spacer
aaattttttgttgataagcatgcaggagcaaacat	Protospacer
********************************** 

19. spacer 4.32|578495|37|NZ_CP019623|PILER-CR,CRISPRCasFinder,CRT matches to KY705255 (Streptococcus phage P0095, complete genome) position: , mismatch: 1, identity: 0.973

caaaacagagaacgcgtgttcattatcggacatctta	CRISPR spacer
caaaacagagaacgagtgttcattatcggacatctta	Protospacer
************** **********************

20. spacer 4.32|578495|37|NZ_CP019623|PILER-CR,CRISPRCasFinder,CRT matches to KY705251 (Streptococcus phage P0091, complete genome) position: , mismatch: 1, identity: 0.973

caaaacagagaacgcgtgttcattatcggacatctta	CRISPR spacer
caaaacagagaacgagtgttcattatcggacatctta	Protospacer
************** **********************

21. spacer 4.32|578495|37|NZ_CP019623|PILER-CR,CRISPRCasFinder,CRT matches to KX879643 (Streptococcus phage CHPC1151, complete genome) position: , mismatch: 1, identity: 0.973

caaaacagagaacgcgtgttcattatcggacatctta	CRISPR spacer
caaaacagagaacgagtgttcattatcggacatctta	Protospacer
************** **********************

22. spacer 4.32|578495|37|NZ_CP019623|PILER-CR,CRISPRCasFinder,CRT matches to MK202161 (Streptococcus phage CHPC1282, complete genome) position: , mismatch: 1, identity: 0.973

caaaacagagaacgcgtgttcattatcggacatctta	CRISPR spacer
caaaacagagaacgagtgttcattatcggacatctta	Protospacer
************** **********************

23. spacer 4.32|578495|37|NZ_CP019623|PILER-CR,CRISPRCasFinder,CRT matches to KY705252 (Streptococcus phage P0092, complete genome) position: , mismatch: 1, identity: 0.973

caaaacagagaacgcgtgttcattatcggacatctta	CRISPR spacer
caaaacagagaacgagtgttcattatcggacatctta	Protospacer
************** **********************

24. spacer 4.32|578495|37|NZ_CP019623|PILER-CR,CRISPRCasFinder,CRT matches to MH937506 (Streptococcus phage CHPC1148, complete genome) position: , mismatch: 1, identity: 0.973

caaaacagagaacgcgtgttcattatcggacatctta	CRISPR spacer
caaaacagagaacgagtgttcattatcggacatctta	Protospacer
************** **********************

25. spacer 4.32|578495|37|NZ_CP019623|PILER-CR,CRISPRCasFinder,CRT matches to KY705253 (Streptococcus phage P0093, complete genome) position: , mismatch: 1, identity: 0.973

caaaacagagaacgcgtgttcattatcggacatctta	CRISPR spacer
caaaacagagaacgagtgttcattatcggacatctta	Protospacer
************** **********************

26. spacer 4.32|578495|37|NZ_CP019623|PILER-CR,CRISPRCasFinder,CRT matches to KY705254 (Streptococcus phage P0094, complete genome) position: , mismatch: 1, identity: 0.973

caaaacagagaacgcgtgttcattatcggacatctta	CRISPR spacer
caaaacagagaacgagtgttcattatcggacatctta	Protospacer
************** **********************

27. spacer 3.2|559668|34|NZ_CP019623|PILER-CR,CRISPRCasFinder,CRT matches to NC_021539 (Listeria phage LP-030-2, complete genome) position: , mismatch: 2, identity: 0.941

aaatcaacgggtaaatatttactcacagagcttc	CRISPR spacer
aaatcaacgggcaaatacttactcacagagcttc	Protospacer
***********.*****.****************

28. spacer 3.2|559668|34|NZ_CP019623|PILER-CR,CRISPRCasFinder,CRT matches to AJ312240 (Bacteriophage PSA complete genome) position: , mismatch: 2, identity: 0.941

aaatcaacgggtaaatatttactcacagagcttc	CRISPR spacer
aaatcaacgggcaaatacttactcacagagcttc	Protospacer
***********.*****.****************

29. spacer 3.3|559731|38|NZ_CP019623|PILER-CR,CRISPRCasFinder,CRT matches to DQ003642 (Listeria phage A006, complete genome) position: , mismatch: 2, identity: 0.947

ctggtcctgtgctgatgattggcggaaaactagtaaca	CRISPR spacer
ctggtcctgtgctaatgattggcggaaaactagtatca	Protospacer
*************.********************* **

30. spacer 4.15|577403|36|NZ_CP019623|PILER-CR,CRISPRCasFinder,CRT matches to MH341453 (Listeria phage PSU-VKH-LP041, complete genome) position: , mismatch: 2, identity: 0.944

gtccacatcgacaataaaaaacacattgtatcactt	CRISPR spacer
gtccacattgacaacaaaaaacacattgtatcactt	Protospacer
********.*****.*********************

31. spacer 4.21|577788|36|NZ_CP019623|PILER-CR,CRISPRCasFinder,CRT matches to KJ094022 (Listeria phage LP-030-3, complete genome) position: , mismatch: 2, identity: 0.944

ttgttcgacggcttagacaaccatcacgcttcttta	CRISPR spacer
cttttcgacggcttagacaaccatcacgcttcttta	Protospacer
.* *********************************

32. spacer 4.28|578239|37|NZ_CP019623|PILER-CR,CRISPRCasFinder,CRT matches to KJ094023 (Listeria phage LP-101, complete genome) position: , mismatch: 2, identity: 0.946

cagtgattatgctaagacctacacaatcgttatcact	CRISPR spacer
cggtgattatgctaagacctacacaatcgttatcatt	Protospacer
*.*********************************.*

33. spacer 4.32|578495|37|NZ_CP019623|PILER-CR,CRISPRCasFinder,CRT matches to MN689509 (Lactococcus phage CHPC1175, complete genome) position: , mismatch: 2, identity: 0.946

caaaacagagaacgcgtgttcattatcggacatctta	CRISPR spacer
caaaaccgagaacgtgtgttcattatcggacatctta	Protospacer
****** *******.**********************

34. spacer 4.32|578495|37|NZ_CP019623|PILER-CR,CRISPRCasFinder,CRT matches to MK448735 (Streptococcus phage Javan349, complete genome) position: , mismatch: 2, identity: 0.946

caaaacagagaacgcgtgttcattatcggacatctta	CRISPR spacer
caaaacagagaacgggtgttcattgtcggacatctta	Protospacer
************** *********.************

35. spacer 4.8|576947|35|NZ_CP019623|PILER-CR,CRISPRCasFinder,CRT matches to DQ003637 (Listeria phage A500, complete genome) position: , mismatch: 3, identity: 0.914

acgagtatcagcgctaaaagagattgttaagcgcc	CRISPR spacer
acgagtatcagcattaaaagagattgttaagcgtc	Protospacer
************..*******************.*

36. spacer 4.8|576947|35|NZ_CP019623|PILER-CR,CRISPRCasFinder,CRT matches to KJ094022 (Listeria phage LP-030-3, complete genome) position: , mismatch: 3, identity: 0.914

acgagtatcagcgctaaaagagattgttaagcgcc	CRISPR spacer
acgagtatcagcattaaaagagattgttaagcgtc	Protospacer
************..*******************.*

37. spacer 3.4|559798|35|NZ_CP019623|PILER-CR,CRISPRCasFinder,CRT matches to KP399677 (Listeria phage vB_LmoS_188, complete genome) position: , mismatch: 4, identity: 0.886

gttgaactagaaaaactgcttgcttgggtagatga	CRISPR spacer
atcgaactcgaaaaactacttgcttgggtagatga	Protospacer
.*.***** ********.*****************

38. spacer 3.4|559798|35|NZ_CP019623|PILER-CR,CRISPRCasFinder,CRT matches to KP399678 (Listeria phage vB_LmoS_293, complete genome) position: , mismatch: 4, identity: 0.886

gttgaactagaaaaactgcttgcttgggtagatga	CRISPR spacer
atcgaactcgaaaaactacttgcttgggtagatga	Protospacer
.*.***** ********.*****************

39. spacer 4.5|576751|36|NZ_CP019623|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR134403 (Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence) position: , mismatch: 4, identity: 0.889

cttcctactttttgacataaaaaataagccgagttg	CRISPR spacer
cttcctactttttgacataaaaaataagccttgctc	Protospacer
******************************  *.* 

40. spacer 4.24|577983|36|NZ_CP019623|PILER-CR,CRISPRCasFinder,CRT matches to FW590615 (JP 2010534058-A/25: ANTIBIOTIC RESISTANCE FREE LISTERIA STRAINS AND METHODS FOR CONSTRUCTING AND USING SAME) position: , mismatch: 4, identity: 0.889

gtgtaattcttaattccgtattgattcgctagtttt	CRISPR spacer
ttataatccttaattccgtattgatttgctagtttt	Protospacer
 *.****.******************.*********

41. spacer 4.24|577983|36|NZ_CP019623|PILER-CR,CRISPRCasFinder,CRT matches to HI504184 (Sequence 26 from Patent EP2147092) position: , mismatch: 4, identity: 0.889

gtgtaattcttaattccgtattgattcgctagtttt	CRISPR spacer
ttataatccttaattccgtattgatttgctagtttt	Protospacer
 *.****.******************.*********

42. spacer 4.24|577983|36|NZ_CP019623|PILER-CR,CRISPRCasFinder,CRT matches to AJ417489 (bacteriophage U153 int gene for U153 integrase) position: , mismatch: 4, identity: 0.889

gtgtaattcttaattccgtattgattcgctagtttt	CRISPR spacer
ttataatccttaattccgtattgatttgctagtttt	Protospacer
 *.****.******************.*********

43. spacer 4.18|577596|34|NZ_CP019623|PILER-CR,CRISPRCasFinder,CRT matches to NC_022111 (Prevotella sp. oral taxon 299 str. F0039 plasmid, complete sequence) position: , mismatch: 6, identity: 0.824

agaaaaaaaacatctttccaatttgttgttttgc	CRISPR spacer
agcaaaaaaacatctttcctatttgttttatcac	Protospacer
** **************** ******* * *..*

44. spacer 4.33|578561|35|NZ_CP019623|PILER-CR,CRISPRCasFinder,CRT matches to MN694189 (Marine virus AFVG_250M578, complete genome) position: , mismatch: 6, identity: 0.829

ttttgaaatatgaggacttagaaaatgaaaaaaat	CRISPR spacer
taataaaaaatgagggcttagaaaatgaaaaaatt	Protospacer
*  *.*** ******.***************** *

45. spacer 4.12|577208|36|NZ_CP019623|PILER-CR,CRISPRCasFinder,CRT matches to AP013647 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C72-MedDCM-OCT-S41-C96, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 8, identity: 0.778

actttagagaaagaaaaacaagaaaaag----taaaactg	CRISPR spacer
tctttagaaaaagaaatacaagaaaaaagatttaaa----	Protospacer
 *******.******* **********.    ****    

46. spacer 4.24|577983|36|NZ_CP019623|PILER-CR,CRISPRCasFinder,CRT matches to NC_019743 (Microcoleus sp. PCC 7113 plasmid pMIC7113.08, complete sequence) position: , mismatch: 8, identity: 0.778

gtgtaattcttaattccgtattgattcgctagtttt---	CRISPR spacer
gtgtaattcttactgccgtattgatt---taactctgaa	Protospacer
************ * ***********   **..*.*   

47. spacer 4.26|578112|34|NZ_CP019623|PILER-CR,CRISPRCasFinder,CRT matches to KT070867 (Bacillus phage PBC2, complete genome) position: , mismatch: 8, identity: 0.765

ataaattatccgtatgttcttgaattgtttcttc	CRISPR spacer
ataatttatccatatgttcttgaatcttgtttat	Protospacer
**** ******.*************. * *.* .

48. spacer 4.18|577596|34|NZ_CP019623|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP038863 (Campylobacter jejuni strain SCJK2 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.735

agaaaaaaaacatctttccaatttgttgttttgc-----	CRISPR spacer
aagaaaaaaacatatttccaatt-----ttttccaaaaa	Protospacer
*..********** *********     **** *     

49. spacer 4.22|577853|35|NZ_CP019623|PILER-CR,CRISPRCasFinder,CRT matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 9, identity: 0.743

gcttttttcaacaattttatcaccagatgtcatta	CRISPR spacer
agttttttcaacaattttatgaacagataattttt	Protospacer
. ****************** * *****. . ** 

50. spacer 4.33|578561|35|NZ_CP019623|PILER-CR,CRISPRCasFinder,CRT matches to MK448625 (Streptococcus satellite phage Javan738, complete genome) position: , mismatch: 9, identity: 0.743

ttttgaaatatgaggacttagaaaatgaaaaaaat	CRISPR spacer
gtatgaactatgaggacttagaaagtgaagacctg	Protospacer
 * **** ****************.****.*    

51. spacer 4.33|578561|35|NZ_CP019623|PILER-CR,CRISPRCasFinder,CRT matches to MK448449 (Streptococcus satellite phage Javan356, complete genome) position: , mismatch: 9, identity: 0.743

ttttgaaatatgaggacttagaaaatgaaaaaaat	CRISPR spacer
gtatgaactatgaggacttagaaagtgaagacctg	Protospacer
 * **** ****************.****.*    

52. spacer 4.33|578561|35|NZ_CP019623|PILER-CR,CRISPRCasFinder,CRT matches to MK448636 (Streptococcus satellite phage Javan749, complete genome) position: , mismatch: 9, identity: 0.743

ttttgaaatatgaggacttagaaaatgaaaaaaat	CRISPR spacer
gtctgaactatgaggacttagaaagtgaagacctg	Protospacer
 *.**** ****************.****.*    

53. spacer 4.33|578561|35|NZ_CP019623|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045037 (Lactobacillus mali strain LM596 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.743

ttttgaaatatgaggacttagaaaatgaaaaaaat	CRISPR spacer
ttaagaaatataaggacttagtaaatgaagttatg	Protospacer
**  *******.********* *******.  *  

54. spacer 4.33|578561|35|NZ_CP019623|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018177 (Lactobacillus hordei strain TMW 1.1822 plasmid pL11822-1, complete sequence) position: , mismatch: 9, identity: 0.743

ttttgaaatatgaggacttagaaaatgaaaaaaat	CRISPR spacer
ttaagaaatataaggacttagtaaatgaagttatg	Protospacer
**  *******.********* *******.  *  

55. spacer 4.33|578561|35|NZ_CP019623|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018181 (Lactobacillus nagelii strain TMW 1.1827 plasmid pL11827-1, complete sequence) position: , mismatch: 9, identity: 0.743

ttttgaaatatgaggacttagaaaatgaaaaaaat	CRISPR spacer
ttaagaaatataaggacttagtaaatgaagttatg	Protospacer
**  *******.********* *******.  *  

56. spacer 4.12|577208|36|NZ_CP019623|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP015030 (Pseudomonas putida strain KF715 plasmid pKF715A, complete sequence) position: , mismatch: 11, identity: 0.694

actttagagaaagaaaaacaagaaaaagtaaaactg	CRISPR spacer
gaaaaagagaaagagaaacaagagaaagtaacaagc	Protospacer
.    *********.********.******* *   

57. spacer 4.12|577208|36|NZ_CP019623|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018048 (Pseudomonas aeruginosa strain DN1 plasmid unnamed1, complete sequence) position: , mismatch: 11, identity: 0.694

actttagagaaagaaaaacaagaaaaagtaaaactg	CRISPR spacer
gaaaaagagaaagagaaacaagagaaagtaacaagc	Protospacer
.    *********.********.******* *   

58. spacer 4.25|578048|35|NZ_CP019623|PILER-CR,CRISPRCasFinder,CRT matches to AP014250 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S40-C9, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 11, identity: 0.686

ttagagataacgttagcatccgtgataacttagtt	CRISPR spacer
caggttctaacgttagtatccttgataacttaaca	Protospacer
. .*   *********.**** **********.. 

59. spacer 4.30|578367|34|NZ_CP019623|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034816 (Paracoccus sp. Arc7-R13 plasmid unnamed6, complete sequence) position: , mismatch: 11, identity: 0.676

caagatatgctagaaatggcgcaaatagcgcgcg	CRISPR spacer
gtccggctgcttgaaatggcgcagatagcgcgtc	Protospacer
    .  **** ***********.********. 

60. spacer 4.26|578112|34|NZ_CP019623|PILER-CR,CRISPRCasFinder,CRT matches to NC_031922 (Synechococcus phage S-CAM9 isolate 1109NB16, complete genome) position: , mismatch: 12, identity: 0.647

ataaattatccgtatgttcttgaattgtttcttc	CRISPR spacer
caggattatccgtatcttcttggattgtagaagg	Protospacer
  ..*********** ******.*****      

61. spacer 4.26|578112|34|NZ_CP019623|PILER-CR,CRISPRCasFinder,CRT matches to KU686204 (Synechococcus phage S-CAM9 isolate 0808SB05, complete genome) position: , mismatch: 12, identity: 0.647

ataaattatccgtatgttcttgaattgtttcttc	CRISPR spacer
caggattatccgtatcttcttggattgtagaagg	Protospacer
  ..*********** ******.*****      

62. spacer 4.26|578112|34|NZ_CP019623|PILER-CR,CRISPRCasFinder,CRT matches to KU686205 (Synechococcus phage S-CAM9 isolate 0908SB82, complete genome) position: , mismatch: 12, identity: 0.647

ataaattatccgtatgttcttgaattgtttcttc	CRISPR spacer
caggattatccgtatcttcttggattgtagaagg	Protospacer
  ..*********** ******.*****      

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 123039 : 129564 10 Listeria_phage(33.33%) tail NA
DBSCAN-SWA_2 1150278 : 1157700 8 Hokovirus(33.33%) NA NA
DBSCAN-SWA_3 1247968 : 1351717 114 Listeria_phage(70.49%) integrase,portal,protease,holin,tail,capsid,tRNA,terminase attL 1273654:1273675|attR 1314527:1314548
DBSCAN-SWA_4 1878071 : 1886357 8 Synechococcus_phage(33.33%) NA NA
DBSCAN-SWA_5 2543270 : 2551114 7 Streptococcus_phage(50.0%) NA NA
Click the colored protein region to show detailed information
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
NZ_CP019623.1|WP_003723290.1|1313251_1313515_-|anti-CRISPR-protein-AcrIIA4 1313251_1313515_- 87 aa aa 14 NA NA 1247968-1351717 NA