CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
NZ_CP019673	Burkholderia cenocepacia strain VC12308 chromosome 3, complete sequence	0 crisprs	cas14j,RT	0
NZ_CP019674	Burkholderia cenocepacia strain VC12308 chromosome 1, complete sequence	0 crisprs	csa3,cas3,DEDDh,DinG	4
NZ_CP019672	Burkholderia cenocepacia strain VC12308 chromosome 2, complete sequence	0 crisprs	cas3,csa3,Cas14u_CAS-V,DinG,c2c9_V-U4	0
NZ_CP019671	Burkholderia cenocepacia strain VC12308 plasmid unnamed, complete sequence	0 crisprs	NA	0

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

70437 : 142737

Burkholderia_phage(68.75%)

plate,holin,tail,integrase

attL 70339:70369|attR 93042:93072

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
70339:70369	attL	NA	NA	NA	NA
WP_006484045.1\|70437_71514_-\|integrase	site-specific integrase	A0A1S5NNJ1	Burkholderia_phage	7.2e-164	81.7
WP_034178513.1\|71516_71789_+	hypothetical protein	NA	NA	NA	NA
WP_006496273.1\|71840_72212_-	hypothetical protein	NA	NA	NA	NA
WP_034201137.1\|72208_75001_-	hypothetical protein	E5E3N5	Burkholderia_phage	0.0e+00	91.0
WP_006496271.1\|75006_75264_-	hypothetical protein	A4JWQ9	Burkholderia_virus	1.2e-13	57.1
WP_077190291.1\|75391_75640_-	ogr/Delta-like zinc finger family protein	K4PAZ0	Burkholderia_phage	6.5e-36	90.2
WP_006485450.1\|75821_76037_-	hypothetical protein	E5E3U1	Burkholderia_phage	4.4e-20	80.0
WP_077190290.1\|76163_76619_+	helix-turn-helix transcriptional regulator	E5E3U2	Burkholderia_phage	5.4e-44	62.9
WP_006485449.1\|76935_77232_+	hypothetical protein	E5E3U3	Burkholderia_phage	1.6e-12	50.5
WP_077190289.1\|77419_78478_-	phage late control D family protein	K4PAY4	Burkholderia_phage	9.1e-135	69.7
WP_077190287.1\|78474_78906_-\|tail	phage tail protein	K4NXK5	Burkholderia_phage	1.1e-41	67.4
WP_077190286.1\|78928_81499_-	hypothetical protein	E5E3U6	Burkholderia_phage	2.4e-133	46.3
WP_006484104.1\|81514_81628_-\|tail	GpE family phage tail protein	A0A089FGX3	Burkholderia_phage	1.1e-09	85.7
WP_034201131.1\|81636_82008_-\|tail	phage tail assembly protein	K4NXA3	Burkholderia_phage	3.4e-28	66.4
WP_077175722.1\|82084_82588_-\|tail	phage major tail tube protein	E5E3U9	Burkholderia_phage	2.2e-70	74.3
WP_060213076.1\|82622_83795_-\|tail	phage tail sheath protein	A4JWS7	Burkholderia_virus	6.6e-187	81.5
WP_077190284.1\|83849_84602_-\|tail	tail assembly chaperone	E5E3V1	Burkholderia_phage	1.4e-89	84.2
WP_077190283.1\|84617_86945_-\|tail	phage tail protein	E5E3V2	Burkholderia_phage	6.2e-261	61.7
WP_006484097.1\|86951_87494_-\|tail	phage tail protein I	E5FFH2	Burkholderia_phage	5.2e-70	70.9
WP_006484106.1\|87486_88401_-\|plate	baseplate assembly protein	E5FFH3	Burkholderia_phage	1.5e-117	72.6
WP_034201129.1\|88397_88760_-\|plate	baseplate assembly protein	K4PAX6	Burkholderia_phage	3.4e-41	69.2
WP_006496264.1\|88756_89443_-\|plate	phage baseplate assembly protein V	K4NXJ5	Burkholderia_phage	4.4e-82	68.7
WP_077190281.1\|89951_90401_-\|tail	phage tail protein	E5E3V9	Burkholderia_phage	1.5e-30	54.2
WP_034201128.1\|90517_90958_-	protein lysB	K4NXJ2	Burkholderia_phage	8.4e-18	44.8
WP_077190279.1\|90954_91812_-	DUF3380 domain-containing protein	A4JWZ0	Burkholderia_virus	3.8e-91	65.4
WP_006484102.1\|91808_92075_-\|holin	phage holin family protein	E5E3W3	Burkholderia_phage	6.2e-24	65.5
WP_006484093.1\|92076_92421_-	membrane protein	A4JWU2	Burkholderia_virus	5.7e-38	77.9
WP_006484103.1\|92437_92644_-\|tail	tail protein	E5E3W5	Burkholderia_phage	5.1e-18	64.7
WP_077190278.1\|93205_94825_+	TIGR04222 domain-containing membrane protein	NA	NA	NA	NA
93042:93072	attR	NA	NA	NA	NA
WP_034201126.1\|97124_97817_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_077190276.1\|98128_99406_-	ATP-grasp domain-containing protein	NA	NA	NA	NA
WP_034201124.1\|99461_100424_-	hypothetical protein	NA	NA	NA	NA
WP_034201123.1\|100420_101119_-	WbqC family protein	NA	NA	NA	NA
WP_034201122.1\|101120_102266_-	DegT/DnrJ/EryC1/StrS family aminotransferase	A0A2D2W2B8	Stenotrophomonas_phage	2.3e-11	31.1
WP_062911073.1\|102294_104640_-	glycosyltransferase family 41 protein	NA	NA	NA	NA
WP_059721094.1\|104897_105197_-	flagellar protein FliT	NA	NA	NA	NA
WP_006484094.1\|105222_106731_-	flagellar filament capping protein FliD	NA	NA	NA	NA
WP_034201118.1\|106863_108018_-	flagellin	NA	NA	NA	NA
WP_006401410.1\|108548_108761_+	30S ribosomal protein S21	NA	NA	NA	NA
WP_060213053.1\|108927_111051_-	TonB-dependent receptor	NA	NA	NA	NA
WP_077190273.1\|111280_112516_+	PepSY domain-containing protein	NA	NA	NA	NA
WP_034201116.1\|112600_113203_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA
WP_077190272.1\|113344_114226_+	ATPase	NA	NA	NA	NA
WP_077190270.1\|114387_115212_+	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA
WP_006489324.1\|115342_116086_-	aquaporin Z	A0A1B1ISL4	uncultured_Mediterranean_phage	8.1e-05	50.8
WP_006489320.1\|116385_116682_+	H-NS histone family protein	F8TUP5	EBPR_podovirus	1.9e-10	41.1
WP_006489318.1\|116785_117850_-	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_006477348.1\|118481_118835_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA
WP_006493184.1\|118927_119482_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA
WP_006482649.1\|119662_120523_+	flagellar motor stator protein MotA	NA	NA	NA	NA
WP_006482647.1\|120536_121556_+	flagellar motor protein MotB	NA	NA	NA	NA
WP_006482646.1\|121580_121958_+	response regulator	NA	NA	NA	NA
WP_077190268.1\|121991_124244_+	chemotaxis protein CheA	NA	NA	NA	NA
WP_006486165.1\|124291_124807_+	chemotaxis protein CheW	NA	NA	NA	NA
WP_077019861.1\|124844_126803_+	HAMP domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	1.5e-10	45.0
WP_006497455.1\|126806_127799_+	chemotaxis protein CheR	NA	NA	NA	NA
WP_006497454.1\|127795_128554_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA
WP_012492268.1\|128550_129642_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA
WP_006485893.1\|129709_130105_+	chemotaxis protein CheY	Q56AR1	Bacillus_thuringiensis_phage	6.0e-07	31.9
WP_006497453.1\|130107_130839_+	protein phosphatase CheZ	NA	NA	NA	NA
WP_012492269.1\|131098_131602_+	DUF2844 domain-containing protein	NA	NA	NA	NA
WP_006497451.1\|131618_132857_+	DUF3443 family protein	NA	NA	NA	NA
WP_006485888.1\|133021_133519_+	VOC family protein	NA	NA	NA	NA
WP_006485884.1\|133948_135148_+	flagellar type III secretion system protein FlhB	NA	NA	NA	NA
WP_006485892.1\|135144_137247_+	flagellar biosynthesis protein FlhA	NA	NA	NA	NA
WP_077190266.1\|137243_139043_+	flagellar biosynthesis protein FlhF	NA	NA	NA	NA
WP_006491878.1\|139035_139854_+	flagellar biosynthesis protein FlhG	NA	NA	NA	NA
WP_006484033.1\|139876_140611_+	RNA polymerase sigma factor FliA	NA	NA	NA	NA
WP_006484031.1\|140862_142281_+	adenosylhomocysteinase	S4VPF6	Pandoravirus	9.9e-44	30.1
WP_006477367.1\|142383_142737_+\|holin	phage holin family protein	NA	NA	NA	NA

DBSCAN-SWA_2

315071 : 355129

Pseudomonas_phage(20.0%)

plate,protease,integrase

attL 308582:308600|attR 368321:368339

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
308582:308600	attL	NA	NA	NA	NA
WP_059723936.1\|315071_315587_+\|protease	ClpXP protease specificity-enhancing factor	A0A1S5R3H3	Pseudomonas_phage	9.5e-21	52.0
WP_077188931.1\|315855_317073_+\|integrase	tyrosine-type recombinase/integrase	Q7M297	Enterobacteria_phage	1.7e-89	43.6
WP_077188932.1\|317287_318505_-	hypothetical protein	NA	NA	NA	NA
WP_102898885.1\|319278_322155_-	DUF927 domain-containing protein	A0A1B0VP75	Pseudomonas_phage	6.6e-71	35.6
WP_077188934.1\|322267_322594_-	hypothetical protein	NA	NA	NA	NA
WP_004522579.1\|322603_322951_-	hypothetical protein	NA	NA	NA	NA
WP_077188935.1\|322943_323156_-	hypothetical protein	NA	NA	NA	NA
WP_077188936.1\|323148_323451_-	hypothetical protein	NA	NA	NA	NA
WP_012329039.1\|323443_323620_-	hypothetical protein	NA	NA	NA	NA
WP_077188937.1\|323950_324475_-	hypothetical protein	NA	NA	NA	NA
WP_042967671.1\|324471_324663_-	AlpA family phage regulatory protein	A0A2L0V109	Agrobacterium_phage	2.4e-06	47.2
WP_125345935.1\|325246_325990_+	hypothetical protein	NA	NA	NA	NA
WP_125345937.1\|326263_327649_-	hypothetical protein	NA	NA	NA	NA
WP_077188939.1\|328041_328617_+	recombinase family protein	A0A219Y9V9	Aeromonas_phage	8.7e-23	39.6
WP_077188940.1\|329574_330873_-	hypothetical protein	NA	NA	NA	NA
WP_077188941.1\|331179_332112_+	hypothetical protein	NA	NA	NA	NA
WP_077188942.1\|332191_333307_-	DUF3396 domain-containing protein	E5E3X7	Burkholderia_phage	1.7e-208	96.0
WP_077188943.1\|333316_334045_-	VRR-NUC domain-containing protein	A4JWV4	Burkholderia_virus	6.8e-49	48.3
WP_077188944.1\|334041_334569_-	hypothetical protein	A4JWV5	Burkholderia_virus	4.5e-58	64.6
WP_125345941.1\|335058_335355_-	hypothetical protein	NA	NA	NA	NA
WP_077188945.1\|335743_338494_+	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	2.4e-78	30.9
WP_077188960.1\|338615_340838_+	hypothetical protein	A0A077K801	Ralstonia_phage	9.7e-38	32.2
WP_077188961.1\|340846_342310_+	virulence factor	NA	NA	NA	NA
WP_059723932.1\|342324_342582_+	PAAR domain-containing protein	NA	NA	NA	NA
WP_059723931.1\|342921_343125_+	hypothetical protein	NA	NA	NA	NA
WP_060373216.1\|343187_343988_-	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_006485338.1\|344269_344587_+	hypothetical protein	NA	NA	NA	NA
WP_062884146.1\|344668_345004_+	hypothetical protein	NA	NA	NA	NA
WP_006491869.1\|345118_345901_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_006477098.1\|345897_347244_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_034178609.1\|347349_347961_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_043204524.1\|348336_348963_+	hypothetical protein	NA	NA	NA	NA
WP_006484395.1\|349009_349525_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_006484397.1\|349540_351031_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_006477093.1\|351101_351605_+	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_006477092.1\|351667_352153_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_006494422.1\|352229_354065_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_058901209.1\|354028_355129_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
368321:368339	attR	NA	NA	NA	NA

DBSCAN-SWA_3

658064 : 667084

Hokovirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_006484920.1\|658064_660017_+	molecular chaperone DnaK	A0A1V0SH73	Hokovirus	2.5e-146	50.3
WP_006476837.1\|660270_661407_+	molecular chaperone DnaJ	A0A1V0SBY2	Catovirus	5.0e-22	26.9
WP_077189442.1\|661410_663333_+	bifunctional anthranilate synthase component I family protein/class IV aminotransferase	S4VT78	Pandoravirus	2.0e-55	36.5
WP_006485002.1\|663407_664223_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	A0A0N7HVJ8	Ostreococcus_lucimarinus_virus	1.8e-37	34.2
WP_006484932.1\|664266_664953_-	deoxynucleoside kinase	A0A0M3UL55	Enterococcus_phage	7.2e-08	26.4
WP_006476832.1\|664949_665492_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA
WP_006497490.1\|665527_667084_-	polynucleotide adenylyltransferase PcnB	H7BUW3	unidentified_phage	1.6e-23	30.8

DBSCAN-SWA_4

795536 : 802112

Enterobacteria_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_077190968.1\|795536_796598_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.6e-86	47.4
WP_006496667.1\|796609_797503_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	1.3e-97	58.8
WP_059721600.1\|797487_798039_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	8.5e-52	55.2
WP_077190967.1\|798053_798980_+	dTDP-4-dehydrorhamnose reductase	I7HXC9	Enterobacteria_phage	1.6e-26	34.6
WP_006496664.1\|799063_800479_+	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	A0A1V0SH58	Hokovirus	1.9e-58	30.8
WP_006496663.1\|800482_801301_+	ABC transporter permease	NA	NA	NA	NA
WP_006496662.1\|801305_802112_+	ABC transporter ATP-binding protein	Q66093	Chlorella_virus	9.4e-07	25.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage